RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4572
(345 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 76.7 bits (190), Expect = 6e-17
Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
P+ C C K F L H++ HT EK + C C K F K H +H + +KC
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
+C + LR H + H E C C + F L H G +PY+C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
K F + +L TH +R H Y+C CGKSF+ +
Sbjct: 141 KSFSREDNLHTH--------QRTHTGEKPYKCPECGKSFSRR 174
Score = 62.1 bits (152), Expect = 1e-11
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 56 FENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRI 115
+ EK + C C K F EH +H + +KC +C
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 116 KYLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYS 173
K L H + H K Y C C + F R L H G +PY C C K F
Sbjct: 63 KDLTRHQRTHTGEKPYK--CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 174 LFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
L H +R H Y+C CGKSF+ +
Sbjct: 121 LRAH--------QRTHTGEKPYKCPECGKSFSRE 146
Score = 34.3 bits (80), Expect = 0.027
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F R AL H++ HT +K
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKK 188
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 64.2 bits (157), Expect = 2e-12
Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 12/166 (7%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDS 101
+ C C + L+ H HT EK FPC C K F + H +H +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 102 EFKCDQ--CPYVAKRIKYLRYHMKKHRKE----YSAYCEPCQEGFFSRDKLETHNIAKHG 155
F CD C ++ H + Y + E C + F ++L+ H +
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 156 AQPYQC--ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
PY+C E C K F L H K H + C GK++
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 48.4 bits (116), Expect = 6e-07
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDS 101
+ C E+C K F+ LK H+ +HTQ+ + C C K F ++ + H H
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Query: 102 EFKCDQCPYVAKRIKYLRYHMKKHRKE 128
K D C +V K H+ + ++
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 58.2 bits (141), Expect = 2e-11
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQ---EKTFPCTVCLKMFKTKAQREEHIASHVTDSE 102
+CE C + +L H++ H + FPC C K F+ H +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 103 FKCDQCP 109
+
Sbjct: 67 LAPQESS 73
Score = 52.8 bits (127), Expect = 2e-09
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS---EFKCDQCPYVAKRIKYLRYHMKKH 125
+ C +C + KA H H F C+ C ++ + H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 126 RKEYSAYCEPC 136
+
Sbjct: 62 HPALLLAPQES 72
Score = 52.4 bits (126), Expect = 3e-09
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQT 204
G+ QCE C K SL H +KH L + CE CGK F +
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDS 53
Score = 39.7 bits (93), Expect = 9e-05
Identities = 9/42 (21%), Positives = 11/42 (26%)
Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
RK CE C K FE ++ H
Sbjct: 28 RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 59.4 bits (145), Expect = 2e-11
Identities = 30/162 (18%), Positives = 45/162 (27%), Gaps = 66/162 (40%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+C C K+F ++ LK H + HT EK F C C K + K
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE----------------- 49
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
L H ++ + Q + C C+
Sbjct: 50 -----------NLLEHEARN---------------------CMNR----SEQVFTCSVCQ 73
Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ F + L H H Y+C C + F K
Sbjct: 74 ETFRRRMELRLH--------MVSHTGEMPYKCSSCSQQFMQK 107
Score = 43.3 bits (103), Expect = 1e-05
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
G+ +C TC K FLSKY L H R H ++C CGK + K
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVH--------NRKHTGEKPFECPKCGKCYFRK 48
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 56.4 bits (137), Expect = 1e-10
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
P +C C + F L H + HT EK F C +C + F +R+ H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61
Query: 106 DQCPYVAKRIKYLRYHMKKHR 126
D+ + + +L + + +
Sbjct: 62 DKVEELLSKNYHLENEVARLK 82
Score = 40.2 bits (95), Expect = 7e-05
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
C C F D L TH G +P+ C+ C + F H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH--------RDIQHIL 57
Query: 190 -YQCELCGKSFNNKQTFSLSN 209
+ + + + + L N
Sbjct: 58 PILEDKVEELLS--KNYHLEN 76
Score = 37.5 bits (88), Expect = 5e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
P+QC C + F L TH R H + C++CG+ F
Sbjct: 3 PFQCRICMRNFSRSDHLTTH--------IRTHTGEKPFACDICGRKFA 42
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 57.6 bits (140), Expect = 2e-10
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 46 PHKCEHCEKEFENRRALKRH---EKNHTQEKTFPCTVC-----LKMFKTKAQREEHIASH 97
+ + C +EF+++ L H E H + K F C L+ FK + H+ H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 98 VTDSEFKCD--QCPYVAKRIKYLRYHMKKH--RKEYSAYCE--PCQEGFFSRDKLETHNI 151
+ KC C R++ L+ H++ H K Y CE C + F + H
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM--CEHEGCSKAFSNASDRAKHQN 120
Query: 152 AKH-GAQPYQCET--CRKLFLSKYSLFTHNKKH 181
H +PY C+ C K + SL H K
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 48.4 bits (116), Expect = 3e-07
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 26/148 (17%)
Query: 72 EKTFPCTVCLKMFKTKAQREEHIAS---HVTDSEFKCDQCPYVA-----KRIKYLRYHMK 123
E C + F ++ Q HI S H EF C K L HM+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 124 KH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNK 179
+H K + E C++ + + L+TH + G +PY CE C K F + H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH-- 118
Query: 180 KHLPIEERLH-----YQCEL--CGKSFN 200
+ R H Y C+L C K +
Sbjct: 119 -----QNRTHSNEKPYVCKLPGCTKRYT 141
Score = 36.8 bits (86), Expect = 0.003
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNKQTFS 206
+ + C + F S+ L H E +H + C G S + F
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINS-----EHIHGERKEFVCHWGGCSRELRP-FK 50
Score = 29.5 bits (67), Expect = 1.0
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHT 70
P+ C+ C K + + +L++H K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 55.5 bits (135), Expect = 2e-10
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
PHKCE C K F + LK H + HT K + C C + +H+ H + FKC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 106 DQCPYVAKRIKYLRYHMKKH 125
CPY ++ L H++ H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 47.8 bits (115), Expect = 1e-07
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
CE C + F +DKL+TH G +PY+C+TC SL H R+H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH--------LRIHSDE 62
Query: 190 --YQCELCGKSFNNK 202
++C++C + N
Sbjct: 63 RPFKCQICPYASRNS 77
Score = 41.6 bits (99), Expect = 3e-05
Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 28/113 (24%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
C VC K F K + + H+ H +KC C Y A L H++ H E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+P++C+ C + L H + H
Sbjct: 63 ----------------------------RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ P++CE C K F K L TH R H Y+C+ C + +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTH--------MRCHTGVKPYKCKTCDYAAADS 49
Score = 37.0 bits (87), Expect = 9e-04
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P KC+ C N L H ++HT +
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 55.3 bits (134), Expect = 3e-10
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 47 HKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSE 102
+ C E+C K F+ LK H+ +HTQ+ + C C K F ++ + H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 103 FKCDQCPYVAKRIKYLRYHMKK 124
K D C +V K H+ +
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAE 83
Score = 45.3 bits (108), Expect = 1e-06
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI 94
P++C H C+K F LKRHEK H C + KT +H+
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
Score = 35.7 bits (83), Expect = 0.002
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC--ETCRKLFLSKYSLFTHNKKHLPIEE 186
Y + E C + F ++L+ H + PY+C E C K F L H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 187 RLHYQCELCGKSF 199
+ C GK++
Sbjct: 62 KKDDSCSFVGKTW 74
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 54.6 bits (132), Expect = 2e-09
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 38/161 (23%)
Query: 52 CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYV 111
+ + + + + P C + F T + H+ + + Y
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 112 AKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLF 168
+ C + F ++ KL H I H G +P+ C C K+F
Sbjct: 63 EE-------------------CPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIF 102
Query: 169 LSKYSLFTHNKKHLPIEERLH-----YQCEL--CGKSFNNK 202
+L H R H ++CE C + F N
Sbjct: 103 ARSENLKIHK--------RTHTGEKPFKCEFEGCDRRFANS 135
Score = 48.8 bits (117), Expect = 2e-07
Identities = 28/149 (18%), Positives = 42/149 (28%), Gaps = 41/149 (27%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTF---------PCTVCLKMFKTKAQREEHIAS 96
+ C++ F L H C K FK K + HI
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 97 HVTDSEFKCD--QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH 154
H + F C C + R + L+ H + H T
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTH----------------------T------ 116
Query: 155 GAQPYQCET--CRKLFLSKYSLFTHNKKH 181
G +P++CE C + F + H H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT 78
P KCE C++ F N K+H HT +K+ P +
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.2 bits (126), Expect = 5e-09
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 33 KRSRKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKA 88
+ H C++ C K + LK H + HT EK + CT C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 89 QREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
+ H H F+C C R +L HMK+H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 37.2 bits (87), Expect = 8e-04
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 121 HMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLFLSKYSLFTH 177
+ R+ + C + + L+ H + H G +PY+C E C F L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 178 NKKHL---PIEERLHYQCELCGKSF 199
+KH P +QC +C +SF
Sbjct: 67 YRKHTGAKP------FQCGVCNRSF 85
Score = 34.9 bits (81), Expect = 0.007
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHT 70
S E+ + RK T K P +C C + F L H K H
Sbjct: 60 SDELTRHYRKHTGAK---PFQCGVCNRSFSRSDHLALHMKRHQ 99
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 51.3 bits (124), Expect = 8e-09
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
P+ C E C++ F +L RH + HT +K F C +C++ F HI +H + F
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKE 128
CD C R + H K H ++
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.3 bits (98), Expect = 3e-05
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ Y+ E C F L H G +P+QC C + F L TH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------I 54
Query: 187 RLH-----YQCELCGKSFN 200
R H + C++CG+ F
Sbjct: 55 RTHTGEKPFACDICGRKFA 73
Score = 37.1 bits (87), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P C+ C ++F KRH K H ++K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 51.3 bits (124), Expect = 9e-09
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--F 103
CE C K F + L RH+ +H+ EK + C VC FK K + H+ SH +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 104 KCDQCPYVAKRIKYLRYHMKK 124
C C R +L H+K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 42.9 bits (102), Expect = 8e-06
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
CE C + F L H ++ G +PY C C F K + H + H Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKPYIC 68
Query: 193 ELCGKSFN 200
+ CGK F+
Sbjct: 69 QSCGKGFS 76
Score = 42.1 bits (100), Expect = 2e-05
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 26/112 (23%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
+ C +C K+F+ H SH + + C C KR + YH++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
+PY C++C K F L H K+
Sbjct: 62 --------------------------VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 40.9 bits (97), Expect = 5e-05
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
G+ CE C K+F Y L H + H Y C +CG F
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH--------KLSHSGEKPYSCPVCGLRFK 46
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 49.5 bits (119), Expect = 2e-08
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 46 PHKCEH--CEKEFENRRALKRHEK-NHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTD 100
C+ C + F NR+ L H+K H +K+F C C K F K +EH+ H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 101 SEFKCDQC 108
++ C+
Sbjct: 67 RDYICEFS 74
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
C C K F ++ LK H K H+ + + C
Sbjct: 38 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 42.5 bits (101), Expect = 7e-06
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCE--TCRKLFLSKYSLFTHNKKHLP 183
C F +R L H +H + + C C K F K L H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH------ 59
Query: 184 IEERLH-----YQCELCGKSF 199
+LH Y CE G S
Sbjct: 60 --MKLHSDTRDYICEFSGPSS 78
Score = 32.9 bits (76), Expect = 0.020
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 155 GAQPYQC--ETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE--LCGKSFNNK 202
G+ C C ++F ++ L H K H + C CGKSFN K
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKK-------YQHIHQKSFSCPEPACGKSFNFK 53
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 46 PHKCEHCEKEFENRRALKRHEKN--HTQEKTFPCTVCLKMFKTKAQREEHIASH 97
++C+ C + + + RH K +PC C K F K H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--FKCDQCPYVAKRIKYLRYHMK 123
E E T+ C VC +++ + H + + + C C R + H+K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 124 KHRK 127
K
Sbjct: 62 IIHK 65
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
G Y+C+ C +++ + H ++ Y C C K F K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRK 53
Score = 34.8 bits (81), Expect = 0.003
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 33 KRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQ 71
+ K + C C KEF + + H K +
Sbjct: 30 YVTSHKRNVK---VYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 133 CEPCQEGFFSRDKLETH--NIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
C+ C + H K + Y C C K F K ++ H K
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 26.7 bits (60), Expect = 2.1
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
E Y+C++C + + +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHI 23
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 50.1 bits (121), Expect = 4e-08
Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 72/162 (44%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ C+ C K F ++ RH H + + C VC K FK K H
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK--------HH-------- 52
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
L HMK H T G +PY+C C
Sbjct: 53 ------------LVGHMKIH----------------------T------GIKPYECNICA 72
Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
K F+ + S H + Y+ ++
Sbjct: 73 KRFMWRDSF--H--------RHVTSCTKSYEAAKAEQNTTEA 104
Score = 42.0 bits (100), Expect = 2e-05
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
C+ C + F + + + H G +PY C C K F K+ L H ++H
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH--------MKIHTGI 63
Query: 190 --YQCELCGKSFNNKQTF 205
Y+C +C K F + +F
Sbjct: 64 KPYECNICAKRFMWRDSF 81
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.5 bits (117), Expect = 5e-08
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 33 KRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREE 92
S ++P + ++C C + + HE+ C C F + ++E
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
Query: 93 HIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK 124
H + + C +C K + H +
Sbjct: 61 HESKC-EYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 40.7 bits (94), Expect = 7e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 88 AQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLE 147
+ + ++C C + H + R C C FFS + +
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQ 59
Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
H +K + C C + F S +S++ H +
Sbjct: 60 EHE-SKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 34.5 bits (78), Expect = 0.009
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
C C S + +H A C C F S H K E C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC----EYKKLTC 72
Query: 193 ELCGKSFNNKQ 203
C ++F +
Sbjct: 73 LECMRTFKSSF 83
Score = 32.2 bits (72), Expect = 0.060
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 154 HGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQ 203
+ YQC C S +H + R C C F + +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC-----RNAAVCPYCSLRFFSPE 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 49.8 bits (120), Expect = 5e-08
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 38/144 (26%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDS 101
P C + C K + L+ H + HT EK + C C + F
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRS--------DQ---- 53
Query: 102 EFKCDQCPYVAKRIKYLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPY 159
L+ H ++H K + C+ CQ F D L+TH G +P+
Sbjct: 54 ----------------LKRHQRRHTGVKPFQ--CKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 160 QCET--CRKLFLSKYSLFTHNKKH 181
C C+K F L H+ H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 48.7 bits (117), Expect = 6e-08
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--FKCDQCPYVAKRIKYLR 119
+ H+ EK + C +C F + HI T++ F C C V R L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 120 YHMKKH 125
H++K
Sbjct: 63 VHLRKQ 68
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE--KTFPCTVCLKMFKTKAQREEHI 94
P++C C F +K H E F C C + K+ H+
Sbjct: 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 41.0 bits (97), Expect = 3e-05
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
G +PY+C C F ++ H + E + C C K
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQK-HTENVAKFHCPHCDTVIARK 58
Score = 40.2 bits (95), Expect = 6e-05
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 118 LRYHMKKHRKE--YSAYCEPCQEGFFSRDKLETHNIAKHG--AQPYQCETCRKLFLSKYS 173
+ H E Y C C F ++ H + KH + C C + K
Sbjct: 3 SGSSGRTHSGEKPYE--CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 174 LFTHNKKH 181
L H +K
Sbjct: 61 LGVHLRKQ 68
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA 95
+ P KC C ++ AL+ HE+ H ++ F C C K + +H+
Sbjct: 2 SSGSSGH---PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Query: 96 SH 97
Sbjct: 59 KF 60
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 14/57 (24%)
Query: 152 AKH-GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ P +C C SK +L H ER+H ++C C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH--------ERIHCTDRPFKCNYCSFDTKQP 50
Score = 40.6 bits (96), Expect = 3e-05
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC +C + + L +H K + + P +
Sbjct: 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 28/79 (35%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
KC +C Y LR H + H +P++C
Sbjct: 10 EKCSECSYSCSSKAALRIHERIH----------------------C------TDRPFKCN 41
Query: 163 TCRKLFLSKYSLFTHNKKH 181
C +L H KK
Sbjct: 42 YCSFDTKQPSNLSKHMKKF 60
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 49.0 bits (116), Expect = 9e-08
Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 27/132 (20%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH--IASHVTDSEFKCDQCPYVAKRIKYLR 119
K + T F C C + T + H H D + D
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN----------- 55
Query: 120 YHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK 179
P + + L + + +C C F S L H
Sbjct: 56 --------------NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Query: 180 KHLPIEERLHYQ 191
K ++
Sbjct: 102 KTKHYQKVSGPS 113
Score = 48.2 bits (114), Expect = 2e-07
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 46 PHKCEHCEKEFENRRALKRH-----EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
+C+ C ++ L H +T K E
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHR 126
KC C + + ++ L HM K +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 40.9 bits (95), Expect = 7e-05
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETH-NIAKH----GAQPYQCETCRKLFLSKY 172
+ + C+ C + + +L H N H + R K
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 173 SLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
SL K + +C CG SF + Q S
Sbjct: 67 SLLEMEGKEDAQKV---LKCMYCGHSFESLQDLS 97
Score = 39.0 bits (90), Expect = 3e-04
Identities = 8/64 (12%), Positives = 14/64 (21%)
Query: 34 RSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+R+L E +K C C F++ H
Sbjct: 40 NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Query: 94 IASH 97
+
Sbjct: 100 MIKT 103
Score = 35.5 bits (81), Expect = 0.005
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 142 SRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK--KHLPIEERLHYQCELCGKSF 199
S + + GA ++C+ C + + L H H + S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 200 NNKQTFSLSN 209
K++
Sbjct: 63 PRKRSLLEME 72
Score = 28.2 bits (62), Expect = 1.5
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 20 ENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRH--EKNHTQEK 73
N S + + KC +C FE+ + L H + H Q+
Sbjct: 54 NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 48.3 bits (116), Expect = 1e-07
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEF 103
C K + LK H + HT EK + C C F + H H F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 104 KCDQCPYVAKRIKYLRYHMKKH 125
+C +C R +L HMK+H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 42.1 bits (100), Expect = 1e-05
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
T T C K + TK+ SH L+ H++ H E
Sbjct: 2 RTATHTCDYAGCGKTY-TKS-------SH--------------------LKAHLRTHTGE 33
Query: 129 --YSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLFLSKYSLFTHNKKHL 182
Y + C F D+L H KH G +P+QC+ C + F L H K+H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 41.0 bits (97), Expect = 4e-05
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLFLSKYSLFTHNKK 180
K ++ C + + L+ H + H G +PY C + C F L H +K
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 181 HL---PIEERLHYQCELCGKSF 199
H P +QC+ C ++F
Sbjct: 60 HTGHRP------FQCQKCDRAF 75
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.1 bits (109), Expect = 2e-07
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 32 KKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC 80
R+RK CE C K F + L RH+ +H+ EK +
Sbjct: 6 SGRTRK--------QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.3 bits (68), Expect = 0.099
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
+ K C +C K+F+ H SH + +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.35
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 123 KKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETC 164
+ RK+ + CE C + F L H ++ G +PY
Sbjct: 7 GRTRKQVA--CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.67
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ + CE C K+F Y L H H
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 24.5 bits (53), Expect = 9.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 186 ERLHYQCELCGKSFNNK 202
R CE+CGK F +
Sbjct: 9 TRKQVACEICGKIFRDV 25
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.3 bits (111), Expect = 2e-07
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
CE C + F + LKRH ++HT EK +PC +C + F + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.4 bits (93), Expect = 6e-05
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
+ CE C + F + L H R H Y C LC ++F
Sbjct: 2 SFVCEVCTRAFARQEHLKRH--------YRSHTNEKPYPCGLCNRAFT 41
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 PHKCEHCEKEFENRRALKRHE-KNHTQEK 73
P+ C C + F R L RH K H+
Sbjct: 30 PYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 27.8 bits (63), Expect = 0.76
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
CE C F ++ L+ H + +PY C C + F + L H +K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 46 PHKCEHCEKEFENRRALKRHEKN-HTQEKTFPCTVCLKMFKT 86
P+ C+ C K F L H K HT E+ C V + +
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNN 201
PY C++C K F L H K ++H ++C++ ++
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKCQVWVSGPSS 53
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS-HVTDSEFKCDQC 108
+ + K + C C K F HI H ++ KC
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 133 CEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLF 168
C+ C +GF D L H H +P++C+
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 47.5 bits (114), Expect = 4e-07
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEF 103
H C C K F LKRH+ HT EK F CT C K F H+ H D +
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 104 KC--DQCPYVAKRIKYLRYHMKKHRKE 128
C D C + L+ H+ H K
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 41.0 bits (97), Expect = 7e-05
Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 35/142 (24%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
C H C K F + A+++H H + C C K F ++ + H H + F
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 104 KC--DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC 161
+C + C LR H++ H T G +PY C
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIH----------------------T------GDRPYVC 95
Query: 162 ET--CRKLFLSKYSLFTHNKKH 181
C K F +L +H H
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTH 117
Score = 38.7 bits (91), Expect = 4e-04
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
+ + + C + F + H HG + + C C K F+ L H +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH--------Q 54
Query: 187 RLH-----YQCEL--CGKSFNNKQTFSL 207
+H +QC CGK F+ F+L
Sbjct: 55 LVHTGEKPFQCTFEGCGKRFS--LDFNL 80
Score = 29.8 bits (68), Expect = 0.58
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTF 75
P+ C C K+F LK H H + K
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 46.4 bits (111), Expect = 4e-07
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE----KTFPCTVCLKMFKTKAQREEHIASHVTDS 101
P+ C HC+K F ++ L H K + F C+ C K F + H +
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 102 EFKCDQC 108
+ +
Sbjct: 75 GVEGENS 81
Score = 45.2 bits (108), Expect = 1e-06
Identities = 20/143 (13%), Positives = 31/143 (21%), Gaps = 65/143 (45%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH 121
+ HT EK + C+ C K F+ K L H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQ----------------------------LLDMH 34
Query: 122 MKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
K++ + C C K F + ++ H
Sbjct: 35 FKRYHDP------------------------NFVPAAFVCSKCGKTFTRRNTMARH---- 66
Query: 182 LPIEERLH-----YQCELCGKSF 199
+ E G S
Sbjct: 67 ----ADNCAGPDGVEGENSGPSS 85
Score = 44.8 bits (107), Expect = 1e-06
Identities = 8/39 (20%), Positives = 9/39 (23%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
C C K F R + RH N
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 38.3 bits (90), Expect = 3e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHL-PIEERLHYQCELCGKSFNNKQT 204
G +PY C C K F K L H K++ P + C CGK+F + T
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 46.7 bits (112), Expect = 5e-07
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
C+ C + F L HE+ HT E+ + C +C K F+ + +H H + FKC
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 106 DQC 108
+C
Sbjct: 77 QEC 79
Score = 44.7 bits (107), Expect = 2e-06
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 117 YLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSL 174
+KE+ C+ C F L H +PY C+ C K F + L
Sbjct: 4 GSSGGRLPSKTKKEFI--CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 175 FTHNKKHLPIEERLH-----YQCELCGKSFN 200
H +H ++C+ CGK F
Sbjct: 62 RDH--------RYIHSKEKPFKCQECGKGFC 84
Score = 40.9 bits (97), Expect = 5e-05
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
P+ C+ C K F + L+ H H++EK F C C K F
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
Score = 40.5 bits (96), Expect = 8e-05
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ + C+ C + F Y+L H ER H Y C++C K+F +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIH--------ERTHTDERPYTCDICHKAFRRQ 58
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC+ C K F R L H+ H Q +
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 26.6 bits (60), Expect = 4.4
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 5/27 (18%)
Query: 181 HLPIEERLH-----YQCELCGKSFNNK 202
+ C+ CG+ F
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKS 30
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 45.5 bits (108), Expect = 5e-07
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKM 83
S S+ + H C H C K + LK H + HT EK F C+ C +
Sbjct: 2 SSGSSGPQIDSSRIR---SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
Query: 84 FKTKAQREEHIASH 97
F + H +H
Sbjct: 59 FARSDELSRHRRTH 72
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 45.0 bits (107), Expect = 8e-07
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV 98
P+ C E C++ F L RH + HT +K F C +C++ F R +H+ +H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF----SRSDHLTTHI 69
Score = 40.4 bits (95), Expect = 4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLFLSKYSLFT 176
L ++ + Y+ E C F D+L H I H G +P+QC C + F L T
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 177 HNKKH 181
H + H
Sbjct: 68 HIRTH 72
Score = 35.7 bits (83), Expect = 0.001
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 55 EFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCPYVA 112
E L + + + + C V C + F + HI H F+C C
Sbjct: 2 EPHPMNNLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 113 KRIKYLRYHMKKH 125
R +L H++ H
Sbjct: 60 SRSDHLTTHIRTH 72
Score = 35.0 bits (81), Expect = 0.003
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHT 70
S E+ + R T QK P +C C + F L H + HT
Sbjct: 34 SDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.4 bits (64), Expect = 0.70
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 155 GAQPYQC--ETCRKLFLSKYSLFTHNKKHL---PIEERLHYQCELCGKSF 199
+PY C E+C + F L H + H P +QC +C ++F
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP------FQCRICMRNF 59
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 43.6 bits (104), Expect = 3e-06
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
P+KC+ C+ F + L H+ HT EK + C +C F A + H
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 146 LETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
H+ H +PY+C+ C+ F K +L +H + +H Y+C +CG FN
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASH--------KTVHTGEKPYRCNICGAQFN 56
Query: 201 NK 202
Sbjct: 57 RP 58
Score = 36.7 bits (86), Expect = 8e-04
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 117 YLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFT 176
+ +H + C+ CQ F + L +H G +PY+C C F +L T
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 177 HNKKH 181
H + H
Sbjct: 64 HTRIH 68
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C C +F LK H + H+ EK
Sbjct: 45 PYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/64 (21%), Positives = 23/64 (35%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH 121
H +K + C C F+ K H H + ++C+ C R L+ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 122 MKKH 125
+ H
Sbjct: 65 TRIH 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 43.2 bits (103), Expect = 4e-06
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
P+ C C K F L +H++ HT EK + C C K F + H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 40.1 bits (95), Expect = 5e-05
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
G +PY C C K F L H +R+H Y+C CGK+F+
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQH--------QRVHTGEKPYKCLECGKAFSQN 55
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C K F L H++ HT
Sbjct: 42 PYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 33.2 bits (77), Expect = 0.011
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
H+ EK + C C K F + +H H + +KC +C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 30.9 bits (71), Expect = 0.083
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
C C + F L H G +PY+C C K F L H + H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 42.8 bits (102), Expect = 7e-06
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 48 KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
C+ C K F+ L H H+ + +PC C K F K+ ++H H + KC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 108 CPYVAKRIKYLRYHMKKH 125
C + L H +KH
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
P+ C++C K F + +K+H HT EK C VC K F
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67
Score = 42.0 bits (100), Expect = 1e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
C+ C + F L TH + +PY C+ C K F K + H +H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------TFIHTGE 55
Query: 190 --YQCELCGKSFNNK 202
++C++CGK+F+
Sbjct: 56 KPHKCQVCGKAFSQS 70
Score = 36.2 bits (85), Expect = 0.001
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 159 YQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ C+ C K F +L TH +H Y C+ CGK F+ K
Sbjct: 2 FDCKICGKSFKRSSTLSTH--------LLIHSDTRPYPCQYCGKRFHQK 42
Score = 30.1 bits (69), Expect = 0.22
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHT 70
PHKC+ C K F L H + HT
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHT 81
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.0 bits (98), Expect = 8e-06
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ CE C + LK+H + HT + + CT C FKTK +H+ S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 37.0 bits (85), Expect = 4e-04
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 77 CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
C C K + ++HI +H + C C + K L HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 35.1 bits (80), Expect = 0.002
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 28 SGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK 73
+KK R T + P+ C +C F+ + L +H K+ K
Sbjct: 14 PSMLKKHIRTHTDVR---PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (77), Expect = 0.006
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHG 155
+ C++C K+ L+ H++ H +C C F ++ L H +K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 32.4 bits (73), Expect = 0.017
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
CE C L+ H +PY C C F +K +L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.1 bits (67), Expect = 0.15
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 159 YQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
Y CE C L H + H + Y C C SF K +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP---YHCTYCNFSFKTKGNLT 46
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F L H K H +EK+ +
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 29.0 bits (66), Expect = 0.24
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ + E+ + C C K F + EH+ H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.2 bits (56), Expect = 5.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F L H K+H
Sbjct: 9 GERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 24.8 bits (55), Expect = 7.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 190 YQCELCGKSFNNK 202
Y C CGK+F
Sbjct: 13 YGCNECGKNFGRH 25
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 40.0 bits (94), Expect = 2e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
CE C + F + LKRH ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 73 KTFPCTVCLKMFKTKAQREEHIASHV 98
++F C VC + F R+EH+ H
Sbjct: 1 RSFVCEVCTRAFA----RQEHLKRHY 22
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 40.0 bits (94), Expect = 3e-05
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 36 RKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT 78
T +K P C C F L RH ++H+ K +
Sbjct: 5 SSGTGEK---PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 28.8 bits (65), Expect = 0.24
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 65 HEKNHTQEKTFPCTV--CLKMFKTKAQREE---HIASHVTDSEFKCD 106
+ T EK F CT C F ++ +E H SH
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRF---SRSDELSRHRRSHSGVKPSGPS 46
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
+KC+ C K F + L +H + HT EK + C C K F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 39.3 bits (93), Expect = 9e-05
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
+ Y+C+ C K F L H R H Y+C+ CGK+F +
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKH--------RRTHTGEKPYKCDECGKAFIQR 59
Score = 33.2 bits (77), Expect = 0.013
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC+ C K F R L H + HT
Sbjct: 46 PYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 33.2 bits (77), Expect = 0.015
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC 108
R E + + + C C K F + +H +H + +KCD+C
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 32.0 bits (74), Expect = 0.034
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
+ R+ C+ C + F L H G +PY+C+ C K F+ + L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 178 NKKH 181
++ H
Sbjct: 66 HRVH 69
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 41.1 bits (96), Expect = 3e-05
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 9/71 (12%)
Query: 44 DGPHKCEHCEKEFENRRALKRH-EKNHTQEKTFP--------CTVCLKMFKTKAQREEHI 94
+ C++ F L H H C K FK K + HI
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 95 ASHVTDSEFKC 105
H +
Sbjct: 83 RVHTGEKSGPS 93
Score = 38.8 bits (90), Expect = 3e-04
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 23/96 (23%)
Query: 68 NHTQEKTFPCTVCLKMFKTKAQREEHIAS-HVTDSEFKCDQCPYVAKRIKYLRYHMKKHR 126
+ + P C + F T + H+ HV E C +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------- 64
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC 161
C + F ++ KL H I H G +
Sbjct: 65 ------CPREGKSFKAKYKLVNH-IRVHTGEKSGPS 93
Score = 38.0 bits (88), Expect = 4e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 154 HGAQPYQCETCRKLFLSKYSLFTH-NKKHLPIEERLHYQCE-----LCGKSFNNKQ 203
++C + F + + L TH +H+ E+ ++ C GKSF K
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Score = 37.6 bits (87), Expect = 7e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
C K F+ + L H + HT EK+ P +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 36.5 bits (84), Expect = 0.002
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCR--------KLFLSKYSLF 175
+ S + C F + +L TH +H G C K F +KY L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 176 THNKKH 181
H + H
Sbjct: 80 NHIRVH 85
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.4 bits (94), Expect = 4e-05
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFK 85
GSSG KR + + KC C F ++ KT C C K
Sbjct: 1 GSSGSSGKRQKIHLGDR---SQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSC 50
Query: 86 TKAQREEHIASH 97
+A + +
Sbjct: 51 QEAALNKDEGNE 62
Score = 36.6 bits (84), Expect = 0.001
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 61 ALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRY 120
+ + +K H +++ C+ C +F ++ C++C + + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 121 HMKKHRKE 128
+
Sbjct: 58 DEGNESGK 65
Score = 34.6 bits (79), Expect = 0.004
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTF 75
CE C K+ AL + E N + +KT
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 33.9 bits (77), Expect = 0.007
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
K H + S C C F R L + CE CRK + +L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 178 NKKH 181
Sbjct: 59 EGNE 62
Score = 33.5 bits (76), Expect = 0.011
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 10/65 (15%)
Query: 142 SRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNN 201
S G + +C C +F+ + +L CE C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT----------PMCEKCRKDSCQ 51
Query: 202 KQTFS 206
+ +
Sbjct: 52 EAALN 56
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P +C HC K F + L H++ HT EK+ P +
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T +K F CT C K F+ K H H +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K F +K +L TH + H
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 25.6 bits (57), Expect = 3.6
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 184 IEERLH-----YQCELCGKSFNNK 202
++C CGKSF K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAK 25
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P +C C+K F + L H++ HT EK +
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C+K F +K +L H + H
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.0 bits (66), Expect = 0.22
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTK 87
+ T EK F C+ C K F TK
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTK 25
Score = 25.5 bits (57), Expect = 3.9
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
++C C K+FN K
Sbjct: 5 SSGTGEKPFECSECQKAFNTK 25
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC+ C K F R L RH HT EK +
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD 106
+ T EK F C +C K F +++ H H +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.40
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C+ C K F + L H+ H
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++C++CGKSF +
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGR 25
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC CEK F + L H++ HT+EK +
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY+C C K F K L H + H
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 29.0 bits (66), Expect = 0.23
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ + C+ C K F K + H H +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 40.7 bits (94), Expect = 1e-04
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 42 KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
K C C F + +LK+H + K C VC K F + +H+
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKK 123
Score = 37.2 bits (85), Expect = 0.002
Identities = 28/128 (21%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 55 EFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKR 114
E + K++ NH K V L+ K Q + P +
Sbjct: 3 ESDVDSGSKKYLSNH---KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDE 59
Query: 115 IKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSL 174
YL + + C C F S L+ H ++ C C+K F S S
Sbjct: 60 SSYLYRLLA-SKAISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSA 116
Query: 175 FTH-NKKH 181
H KKH
Sbjct: 117 LDHVCKKH 124
Score = 35.3 bits (80), Expect = 0.008
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 87 KAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKL 146
+ ++++++H KR L K+ + + L
Sbjct: 7 DSGSKKYLSNHKG---IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 147 ETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
+K + + C C F S SL K+H+ E C +C K F + +
Sbjct: 64 YRLLASKAIS-QFVCPLCLMPFSSSVSL----KQHIRYTEH-TKVCPVCKKEFTSTDSA 116
Score = 34.9 bits (79), Expect = 0.012
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 48 KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+E + L +K + ++ + +AS S+F C
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-SQFVCPL 79
Query: 108 CPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHG 155
C L+ H++ C C++ F S D H KH
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHN 125
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C+ C K F L +H++ HT E++
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 28.7 bits (65), Expect = 0.33
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ CRK F+ L H + H
Sbjct: 9 GKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 28.3 bits (64), Expect = 0.44
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ + +K + C C K F +H H +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
H+C C + F + L +H++ HT EK +
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.27
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + K+ C C + F K+ +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.5 bits (62), Expect = 0.68
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ +QC C + F K L H + H
Sbjct: 9 STKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 25.2 bits (56), Expect = 4.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
+QC CG+ F K
Sbjct: 13 HQCHECGRGFTLK 25
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F R L +H+K HT++K +
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F + +L H K H
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 25.9 bits (58), Expect = 2.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F ++ +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ CE C F + + LK H + HT
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 30.9 bits (71), Expect = 0.035
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK +PC +C F+ + H+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY CE C F +L +H + H
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 190 YQCELCGKSFNNKQTF 205
Y CE+CG F + QT
Sbjct: 12 YPCEICGTRFRHLQTL 27
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
KC C+ F +L+ H+ H EK +
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ EKT+ C C F + H HV +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.20
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + ++C C F SL H H
Sbjct: 9 GEKTWKCRECDMCFSQASSLRLHQNVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KCE C K + R L H++ H EKT +
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 28.6 bits (65), Expect = 0.34
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
+PY+CE C K + + +L H + H
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK + C C K + + + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 26.3 bits (59), Expect = 1.9
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+CE CGK +N +
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRR 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 37.4 bits (86), Expect = 2e-04
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C HC+++F + AL+RH + HT EK
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 11/143 (7%)
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV 252
+ C ++ L N+ + S M L + L+ S +
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281
Query: 253 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 312
L+N+ +SL+ + + L + V LS+ L L L + L+L+
Sbjct: 282 HCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIR---CQLKQFPTLDLPFLKSLTLT 336
Query: 313 N------MYVLSLSNMYVLSLSN 329
++L ++ L LS
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSR 359
Score = 37.3 bits (87), Expect = 0.006
Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
SL + L +S + L L+++ L ++ ++ V + + +N
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA-------NTTN 474
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
+ L LS + +S +L + +L++S+ +L L + + L ++ L S
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Score = 36.2 bits (84), Expect = 0.016
Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%)
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSS-SNMY 251
+ + N+ L +S + ++ L+L +S+
Sbjct: 167 TITVNDLQFLRENPQVNLS-LDMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 252 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 311
+ +L+ ++V L N+ + S M L + L+ S + L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 312 SNMYVLSLSNMYVLSLSNMLSSDPLPEL 339
+N+ +SL+ + + L ++ L
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSL 312
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F R +L H+ H+ EK +
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F ++ SL H H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.3 bits (64), Expect = 0.40
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T EK + C C K F+ ++ H A+H +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.2
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F +
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAR 25
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.6 bits (88), Expect = 2e-04
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P +C+ C F +L +H ++H +
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 29.9 bits (68), Expect = 0.097
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P+QC+ C F SLF H + H
Sbjct: 9 GEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 29.1 bits (66), Expect = 0.24
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ T EK F C C F +H+ SH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 25.6 bits (57), Expect = 3.8
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 190 YQCELCGKSFN 200
+QC+ CG +F+
Sbjct: 13 FQCKECGMNFS 23
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KCE C K F RR L H HT EK +
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +PY+CE C K F+ + L+TH +H
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTH--------HMVHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.5
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 25.6 bits (57), Expect = 3.9
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+CE CGK F +
Sbjct: 5 SSGTGEKPYKCEECGKGFICR 25
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC C K F R AL H K HT EK +
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K F + +L H+K H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T EK F C C K F ++ H H +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.4
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
++C CGK F+ +
Sbjct: 5 SSGTGEKPFKCVECGKGFSRR 25
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F + L+ H+K HT E+ +
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 29.0 bits (66), Expect = 0.22
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F K L H K H
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 27.5 bits (62), Expect = 0.70
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C+ C K F K++ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 25.6 bits (57), Expect = 4.2
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGKSF K
Sbjct: 4 GSSGTGEKPYKCSDCGKSFTWK 25
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.2 bits (87), Expect = 2e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
+ C C K F L RH+K HT++
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.1 bits (66), Expect = 0.22
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
++ Y C C K F + L H K H
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 26.8 bits (60), Expect = 1.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T K++ C C K F H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 25.6 bits (57), Expect = 3.8
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y C CGK+F
Sbjct: 4 GSSGTDSKSYNCNECGKAFT 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 41.9 bits (99), Expect = 2e-04
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVL--SLSNMYVLSL 263
L N++ + LS L + + ++ L L +V L + + L N+ +L L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 264 SNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
SN + ++++ + L + +L L + + L ++ LS++++L+L +
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Score = 40.8 bits (96), Expect = 6e-04
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 205 FSLSNMYVLSLSN--MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLS 262
+ +++ LSLSN + S++ L +N+ +L LS LN N L +
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 263 LSNMYVLSLSNMYVLSLSNMYVLSLS-NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
L + L + + L N+ L+L + S+S + + + L + L++ +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Score = 35.0 bits (81), Expect = 0.041
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 8/145 (5%)
Query: 198 SFNNKQTFS-LSNMYVLSLSNMYVLSSSNMYVLS-LSNMYVLSLSKVRLNSSSNMYVLSL 255
S FS L ++ VL L + L N++ + LS + + +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 256 SNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 315
++ L L + + S L N+ +L LSN + ++++ + L +
Sbjct: 454 PSLQRLMLRR------VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 316 VLSLSNMYVLSLSNMLSSDPLPELL 340
+L L + + L + L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFL 532
Score = 33.4 bits (77), Expect = 0.11
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 198 SFNNKQTFSLSNMYVLSLSNMYV--LSSSNMYVL------SLSNMYVLSLSKVRLNSS-- 247
S N Q + + + S++ LSS+ + ++ ++ L L+ V+L S
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 248 -SNMYVLSLSNMYVLSLSNMYV----------LSLSNMYVLSLSNMYVLSLSNMYVLSLS 296
L+ +++ LSLSN + L +N+ +L LS + + N L
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272
Query: 297 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIK 342
+ L + L + + L N+ L+L + + +
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Score = 32.7 bits (75), Expect = 0.20
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
L + L++ + + + L N+ LSLS NS +++ L+ L+ S
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS----NSFTSLRTLTNETFVSLAHSP 382
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS-LSNMYVLSLSN 321
+++L+L+ + + + L ++ VL L + L N++ + LS
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Score = 32.3 bits (74), Expect = 0.25
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 207 LSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNM 266
S + L + + L + VL+L L+ S+ +N+ L L +
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Query: 267 YVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN----------MYV 316
+ + N + N+ L LS+ + S + L N+ L LSN + +
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Query: 317 LSLSNMYVLSLSN 329
+ S++ L LS+
Sbjct: 168 FANSSLKKLELSS 180
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 206 SLSNMYVLSLSN-------MYVLSSSNMYVLS-LSNMYVLSLSKVRLNSSSNMYVLSLSN 257
L + +L L + + +Y L LS++++L+L + L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMYVLSLSNMYVLSLSN 313
+ ++ L + +L + ++ L+L + S+ ++ + N+ L +
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Score = 29.6 bits (67), Expect = 1.9
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 231 LSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYV--------LSLSNMYVLSLSNM 282
+N+ VL+L+ +L S + L + + L + VL+L +
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 283 YVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSSDPLPEL 339
+ LS+ +N+ L L + + + N + N+ L LS N LSS L
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F R +L H+ HT +K +
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 28.7 bits (65), Expect = 0.26
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 18/52 (34%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +PY+C C K F + SL TH + +H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH--------QAIHTGKKPSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F ++ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KCE C F L+ H HT
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 28.3 bits (64), Expect = 0.34
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+CETC F+ L H H
Sbjct: 8 GEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 28.3 bits (64), Expect = 0.44
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C C F A H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.2 bits (56), Expect = 4.1
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 190 YQCELCGKSFN 200
Y+CE CG F
Sbjct: 12 YKCETCGARFV 22
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K ++ R L H++ HT EK +
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 28.7 bits (65), Expect = 0.26
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK + C C K +K + + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 28.3 bits (64), Expect = 0.38
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K + + L H + H
Sbjct: 9 GEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 25.2 bits (56), Expect = 5.1
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+C CGK + +
Sbjct: 5 SSGSGEKPYKCVECGKGYKRR 25
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P C C K F ++ L H+K HT E+ +
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G P+ C C K+F K +L H K H
Sbjct: 9 GENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 28.2 bits (64), Expect = 0.44
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E F C+ C K+F K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 24.8 bits (55), Expect = 6.7
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
+ C CGK F +K
Sbjct: 5 SSGTGENPFICSECGKVFTHK 25
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P C CEK F ++ L H++ H +EK +
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P+ C C K F SK L H + H
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 27.1 bits (61), Expect = 0.95
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ EK F C+ C K F +K+ H +H +
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 4.7
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 190 YQCELCGKSFNNK 202
+ C C K+F++K
Sbjct: 11 FGCSCCEKAFSSK 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 41.0 bits (96), Expect = 3e-04
Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSS--NMYVLSLSNMYVLSL 263
SL + V + + + VL +S + L+L + + ++ + + ++ +L+L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 264 SNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN-- 321
N+ + L+ + + VLS++ + L+ S V + L LS+
Sbjct: 129 RNVSWATRDA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 322 -MYVLSLSNMLSSDPLPEL 339
+ L + L P L
Sbjct: 185 ELGERGLISALCPLKFPTL 203
Score = 37.6 bits (87), Expect = 0.004
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 203 QTFSLSNMYVLSLSNMYVLSSS--NMYVLSLSNMYVLSLSKVRL----NSSSNMYVLSLS 256
+ +S + L+L N+ V ++ + + ++ +L+L V + +
Sbjct: 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149
Query: 257 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY----VLSLSNMYVLSLS 312
+ VLS++ + L+ S V + L LS+ L + L + VL+L
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 313 NMYVLSLSNMYVLSLSNMLS 332
N + + S + + +
Sbjct: 210 NAGMETPSGVCSALAAARVQ 229
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C K F +R L H+K HT EK
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.26
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F + +LFTH K H
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.9 bits (63), Expect = 0.65
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F ++ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 25.2 bits (56), Expect = 4.5
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+C CGK+F ++
Sbjct: 5 SSGTGEKPYRCAECGKAFTDR 25
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KCE C K + ++ L H+K HT E+ +
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 31.0 bits (71), Expect = 0.046
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+CE C K + SK++L H K H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 184 IEERLH-----YQCELCGKSFNNK 202
Y+CE CGK +N+K
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSK 25
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K + +K + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F +R++L H++ H+ +K +
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F + SL H + H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C+VC K F + H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F + L H+++HT E+ +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F K L H + H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 28.2 bits (64), Expect = 0.35
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C+ C K F K+ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 24.8 bits (55), Expect = 6.4
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGTGEKPYKCSDCGKAFTRK 25
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 3e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC C K F + L H++ H +K +
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T EK CT C K F K+Q H +HV D
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 28.7 bits (65), Expect = 0.29
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P +C C K F K L H + H
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 24.8 bits (55), Expect = 8.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
+C CGK+F K
Sbjct: 13 CKCTECGKAFCWK 25
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P+ C C K F +R L +H+K HT EK
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.25
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E+ + CTVC K F ++ +H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 27.8 bits (63), Expect = 0.51
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F + +L H K H
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 25.1 bits (56), Expect = 4.8
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y C +CGK+F ++
Sbjct: 5 SSGTGERPYICTVCGKAFTDR 25
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F L +H + HTQE +
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C VC K F A +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 27.9 bits (63), Expect = 0.59
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 18/52 (34%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +PY C C K F+ L H R+H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQH--------LRVHTQETLSGPS 44
Score = 25.6 bits (57), Expect = 3.5
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y C +CGK+F
Sbjct: 4 GSSGTGEKPYSCNVCGKAFV 23
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C+ C K F + L +H+K HT EK +
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ T EK + C VC K F KA H+A H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKA----HLAQH 31
Score = 28.7 bits (65), Expect = 0.29
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ C K F K L H K H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 24.8 bits (55), Expect = 7.0
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C++C K+F K
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQK 25
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F ++ L H + H+ EK +
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C+ C K F +K+ H+ +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.3 bits (64), Expect = 0.37
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F SK L H + H
Sbjct: 9 GEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y C CGK+F++K
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSK 25
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ CE C K F + L+ H++ HT EK +
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY CE C K F+ L H + H
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 27.9 bits (63), Expect = 0.60
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F +Q +EH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 25.2 bits (56), Expect = 4.5
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y CE CGK+F +
Sbjct: 5 SSGTGEKPYNCEECGKAFIHD 25
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
+C C K F + L H+K HT EK +
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + ++C C K F K +L H K H
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 28.6 bits (65), Expect = 0.34
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ T K F CT C K F K+ H H +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.3
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++C CGK+F K
Sbjct: 4 GSSGTGGKHFECTECGKAFTRK 25
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.8 bits (85), Expect = 4e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P KC C++ F R L +HE+ H ++
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 34.1 bits (78), Expect = 0.003
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ + G P++C C ++F + L H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.8 bits (67), Expect = 0.097
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 93 HIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
+S ++ FKC +C V + YL H + H ++
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 29.4 bits (66), Expect = 0.15
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ E F C+ C ++F + +H +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P C C K F + L +H + HT EK +
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.28
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P+ C C K F L H + H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.5 bits (62), Expect = 0.70
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK F C C K F +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 24.8 bits (55), Expect = 7.6
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
+ C CGK+F++
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDH 25
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L H+ HT EK +
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F + +L TH H
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F+ + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 25.6 bits (57), Expect = 3.4
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAH 25
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F+ + +L H ++HT EK +
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.098
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F +K SL H + H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 28.3 bits (64), Expect = 0.37
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T ++ + C C K FKTK+ H SH +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGTGQRPYECIECGKAFKTK 25
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC+ C K F +L H++ HT EK +
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ C K F SL H + H
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C VC K F+ + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 2.4
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C++C KSF
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYG 25
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH HT EK +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.76
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H H
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.5 bits (57), Expect = 3.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ T +K + C C K+F + H+A H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNS----HLARH 31
Score = 25.2 bits (56), Expect = 6.1
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y+C CGK F
Sbjct: 4 GSSGTGKKPYKCNECGKVFT 23
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F + L RH++ HT EK +
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F+ + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 27.9 bits (63), Expect = 0.61
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H + H
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 25.2 bits (56), Expect = 5.2
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK F +
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHN 25
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F + + +H++ HT ++ +
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 28.7 bits (65), Expect = 0.27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F S H + H
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 27.2 bits (61), Expect = 0.91
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T EK + C C K F + +H H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 24.8 bits (55), Expect = 7.4
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F +
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDN 25
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F + L H++ HT EK +
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F K L H + H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 28.3 bits (64), Expect = 0.45
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C++C K F K+Q H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 25.6 bits (57), Expect = 4.1
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C +CGKSF K
Sbjct: 4 GSSGTGEKPYECSICGKSFTKK 25
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC+ C K F L H + HT EK +
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.38
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK F C C K F+ H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 27.8 bits (63), Expect = 0.61
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 18/52 (34%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +P++C+ C K F L +H R+H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASH--------LRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.1
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++C+ CGK+F
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQN 25
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C+ C K F + +L +H++ H+ EK +
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.24
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +PY+C+ CRK F SL H +R+H
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQH--------QRVHSGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C VC K F A +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 25.2 bits (56), Expect = 5.9
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C++C K+F++
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHH 25
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
++C C K F + L H++ H EK +
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.26
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + Y+C C K F+ K +L H + H
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E+ + C+ C K F K+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 25.6 bits (57), Expect = 4.1
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGTGERHYECSECGKAFIQK 25
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F + L H+++HT K +
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 30.2 bits (69), Expect = 0.091
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T K + C+ C K F K+Q H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F K L H + H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
Y C C K+F+ K
Sbjct: 13 YGCSQCAKTFSLK 25
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
+KC+ C KEF L+ H++ HT EK +
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.50
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + Y+C+ C K F L TH + H
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.5 bits (62), Expect = 0.70
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ EK + C VC K F + + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 26.0 bits (58), Expect = 3.0
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 184 IEERLH-----YQCELCGKSFN 200
Y+C++CGK F+
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFS 23
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC C K F R L H + H++EK+ +
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.49
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ + E+ F C C K F ++ H+ H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K F + L H + H
Sbjct: 9 GERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 24.8 bits (55), Expect = 7.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
++C CGK F +
Sbjct: 13 FKCNECGKGFGRR 25
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH HT EK +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.38
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.9 bits (58), Expect = 2.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 24.4 bits (54), Expect = 8.7
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 5/19 (26%)
Query: 187 RLH-----YQCELCGKSFN 200
Y+C CGK F
Sbjct: 5 SSGTGEKPYKCNECGKVFT 23
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
PH+C C K F L H++ HT E +
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K F L H + H
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 27.5 bits (62), Expect = 0.74
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK C C K F +Q H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/160 (12%), Positives = 43/160 (26%), Gaps = 30/160 (18%)
Query: 206 SLSNMYVLSLSN-------MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNM 258
S+S M + S + N+ ++LS +++ + S +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
Query: 259 YVLSLSN-------MYVLSLSNMYVLSLSNMYVLSLSN---------MYVLSLSNMYVLS 302
++L L N + + + L +L + +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 303 LSN-------MYVLSLSNMYVLSLSNMYVLSLSNMLSSDP 335
LS L+ S + + N + L P
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559
Score = 33.5 bits (77), Expect = 0.10
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 12/108 (11%)
Query: 242 VRLNSSSNMYVLSLSNMY--------VLSLSNMYVLSLS-NMYVLSLSNMYVLSLSNMYV 292
V LNS+ + LSL + L+ + VL+L + ++ +S
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 293 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELL 340
+ + S++ +++ + +
Sbjct: 135 DEQKQKMRMHYQK---TFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
Score = 33.1 bits (76), Expect = 0.16
Identities = 24/179 (13%), Positives = 47/179 (26%), Gaps = 45/179 (25%)
Query: 205 FSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLS 264
F N+ ++LSN + + S + ++L L L N +
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN-SLKDENENFKNTY 488
Query: 265 NMYVLSLSN---------MYVLSLSNMYVLSLSN-------MYVLSLSNMYVLSLSNMYV 308
+ + L +L + + LS L+ S + + N
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 309 LS--------------LSNMYVLSLS-------------NMYVLSLS-NMLSSDPLPEL 339
++ L + N+ VL + N S L +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYV 607
Score = 31.9 bits (73), Expect = 0.30
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 9/130 (6%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
S + LSL + L+ + VL+L + ++ +S
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK-------GISA 131
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 325
+ +V L + S S+ ++L + +
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ--KSIKKSSRITLKDTQIG 189
Query: 326 SLSNMLSSDP 335
LSN ++
Sbjct: 190 QLSNNITFVS 199
Score = 30.0 bits (68), Expect = 1.4
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 28/164 (17%)
Query: 200 NNKQTFSLSNMYVLSLSNMYVLSSSNM------YVLSLSNMYVLSLSKVRLNSSSNMYVL 253
++ Q S+ ++L + + SN V+ L+ + + + +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227
Query: 254 SLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL--------SLSNMYVLSLSN 305
N L N L ++ + + N L +L M +++++
Sbjct: 228 ENENSEYAQQYKTEDLKWDN-----LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
Query: 306 -------MYVLSLSNMYVLS-LSNMYVLSLS-NMLSSDPLPELL 340
+ + ++ + N L + P+ L
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 6e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KC C K + R L +H++ HT EK +
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T EK F C C K + + +H H +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.65
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K + + L H + H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++C CGKS+N +
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQR 25
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P +CE C K F L H++ HT EK +
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.33
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK F C C K F + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 27.9 bits (63), Expect = 0.52
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P+QCE C K F L +H + H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 25.2 bits (56), Expect = 4.7
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
+QCE CGK F
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQN 25
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C+ C K F L +H++ H+ EK +
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.22
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ T EK + C C K F+ + +H H +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.37
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C+ C K F L H + H
Sbjct: 9 GEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 24.8 bits (55), Expect = 7.1
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y C+ CGKSF
Sbjct: 4 GSSGTGEKPYNCKECGKSFR 23
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C+ C K F L +H++ HT EK +
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.60
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 27.5 bits (62), Expect = 0.80
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ C K F L H + H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 24.4 bits (54), Expect = 9.4
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C+ CGK+F+
Sbjct: 4 GSSGTGEKPYECKECGKAFSQT 25
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
+ C+ C K F L +HE+ H+ EK +
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ + G + Y C+ C K F L H + H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 25.2 bits (56), Expect = 4.6
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y C+ CGKSF+
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRA 25
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C+K F + L H++ HT E
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C+K F +K +L H + H
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.3 bits (59), Expect = 1.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F TK+ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 25.5 bits (57), Expect = 3.5
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 184 IEERLH-----YQCELCGKSFNNK 202
Y+C C K+FN K
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTK 25
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC+ C K F L +H H+ E+ +
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 28.2 bits (64), Expect = 0.45
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ T EK + C VC K F+ H+ H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFR----VSSHLVQH 31
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ C K F L H+ H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 25.9 bits (58), Expect = 2.8
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y+C++CGK+F
Sbjct: 4 GSSGTGEKPYKCQVCGKAFR 23
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH+ HT EK +
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F+ + H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H H
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 25.5 bits (57), Expect = 4.1
Identities = 6/22 (27%), Positives = 7/22 (31%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK F
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRN 25
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
KC C+K F +L H++ HT EK +
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + ++C C+K F SL H + H
Sbjct: 9 GKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 27.1 bits (61), Expect = 0.98
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ +K F C C K F + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 24.8 bits (55), Expect = 6.8
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++C C K+F
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQS 25
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F + L RH + HT EK +
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F+ K L H + H
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 27.5 bits (62), Expect = 0.79
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F K+ H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 25.2 bits (56), Expect = 5.3
Identities = 8/22 (36%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y C CGKSF K
Sbjct: 4 GSSGTGEKPYICNECGKSFIQK 25
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH HT EK +
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.52
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 24.4 bits (54), Expect = 8.8
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 5/20 (25%)
Query: 186 ERLH-----YQCELCGKSFN 200
Y+C CGK F
Sbjct: 4 GSSGTGEKPYKCNECGKVFT 23
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KCE C K F H+++H+ EK +
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.071
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 14/47 (29%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCG 196
G +P++CE C K F + ++H +R H G
Sbjct: 9 GEKPFKCEECGKGFYTNSQCYSH--------QRSHSGEKPSGPS-SG 46
Score = 27.9 bits (63), Expect = 0.51
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ + EK F C C K F T +Q H SH
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 24.8 bits (55), Expect = 6.4
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
++CE CGK F
Sbjct: 5 SSGSGEKPFKCEECGKGFYTN 25
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L H + HT + +
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 30.2 bits (69), Expect = 0.097
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ + EK + C+ C K F EH H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 28.2 bits (64), Expect = 0.42
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F L H + H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F+
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRH 25
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P +C C K F L H++ HT EK +
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.31
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK F C C K F +Q H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 27.9 bits (63), Expect = 0.60
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 13/44 (29%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +P++C C K F L TH +R+H
Sbjct: 9 GEKPFECAECGKSFSISSQLATH--------QRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.0
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
++C CGKSF+
Sbjct: 5 SSGTGEKPFECAECGKSFSIS 25
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH + HT K +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H + H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 25.9 bits (58), Expect = 2.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P+ C C K F ++ L H + HT E
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T K + C C K F++K+ H +H +S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 28.6 bits (65), Expect = 0.28
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F SK L H + H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 25.1 bits (56), Expect = 4.5
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y C CGK+F +K
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSK 25
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L H + HT EK +
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.65
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK + C C K+F + H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 27.5 bits (62), Expect = 0.80
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H + H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 25.1 bits (56), Expect = 4.9
Identities = 6/22 (27%), Positives = 7/22 (31%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK F
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQN 25
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C++C K F L RH++ HT EK +
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.41
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C+ C K F L H + H
Sbjct: 9 GEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 27.9 bits (63), Expect = 0.53
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ + EK + C C K F A+ H H +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.4
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y C+ CGK+F
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLS 25
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 35.7 bits (83), Expect = 8e-04
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+ C C K F R +L H+++ +Q
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 29.6 bits (67), Expect = 0.11
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY C C K F + SL H +
Sbjct: 8 GETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 25.3 bits (56), Expect = 4.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
Y C CGKSF +
Sbjct: 12 YLCGQCGKSFTQR 24
Score = 25.3 bits (56), Expect = 4.9
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ E + C C K F + H S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 9e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+ C C K F + L H++ HT EK +
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.31
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F K L H + H
Sbjct: 9 GEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK + C C K F K+ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F + L H++ H EK +
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY+C C K F KY L +H + H
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTH 35
Score = 28.6 bits (65), Expect = 0.32
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E + C C K F K Q H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 24.8 bits (55), Expect = 8.0
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+C CGK+F+ K
Sbjct: 5 SSGTGENPYECHECGKAFSRK 25
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
H C+ C K F AL+ H++ H EK +
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 26.8 bits (60), Expect = 1.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + + C+ C K F +L H + H
Sbjct: 9 GEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.4 bits (59), Expect = 2.0
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ + EK+ C C K F + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 24.9 bits (55), Expect = 6.6
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 190 YQCELCGKSFNNK 202
+ C+ CGK+F
Sbjct: 13 HTCDECGKNFCYI 25
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P KCE C K F L H++ HT EK +
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
+ + EK F C C K F +Q H H +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.48
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++CE C K F L +H + H
Sbjct: 9 GEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 25.2 bits (56), Expect = 5.7
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
++CE CGK F
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQN 25
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P+ C C K F +L H+ HT EK
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.35
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C K F SL TH H
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 27.5 bits (62), Expect = 0.70
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T K + C C K F + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 25.2 bits (56), Expect = 5.9
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y C CGK+F+
Sbjct: 5 SSGTGVKPYMCNECGKAFSVY 25
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C K F + L H++ HT E
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F+ K L H + H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.5 bits (62), Expect = 0.88
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C+ C K F K+Q H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 25.6 bits (57), Expect = 3.4
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGKSF K
Sbjct: 4 GSSGTGEKPYECSDCGKSFIKK 25
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F L RH++ HT EK +
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.29
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 13/44 (29%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCE 193
G +PYQC C K F L H +R+H
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARH--------QRVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T K + C C K F ++ H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 24.8 bits (55), Expect = 6.8
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
YQC CGK+F+
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQT 25
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C K F + L H++ H E
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.0 bits (66), Expect = 0.18
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY+C C K F K L +H + H
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTH 33
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ E + C+ C K F K Q H +H +S
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.6 bits (57), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 190 YQCELCGKSFNNK 202
Y+C CGK+FN K
Sbjct: 11 YECSECGKAFNRK 23
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
+KC C K F L +H+K HT EK +
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + Y+C C K+F L H K H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 28.6 bits (65), Expect = 0.30
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F +Q +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 24.8 bits (55), Expect = 6.4
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK F+
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRN 25
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L H++ HT K +
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.22
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K+F + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 27.1 bits (61), Expect = 0.91
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K+F L H + H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 24.8 bits (55), Expect = 6.7
Identities = 6/22 (27%), Positives = 7/22 (31%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK F
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQN 25
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P+KC C K F L RH++ HT EK +
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F ++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 27.5 bits (62), Expect = 0.83
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F L H + H
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F+
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQT 25
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
PHKC C K F L +H++ HT EK +
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.50
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E+ C C K F A +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 27.5 bits (62), Expect = 0.68
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +P++C C K F+ L H + H
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 25.2 bits (56), Expect = 6.2
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
++C CGKSF
Sbjct: 5 SSGTGERPHKCNECGKSFIQS 25
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
++C C K F + L H++ HT EK +
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 152 AKH-----GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + Y+C C K F K +L H + H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 28.2 bits (64), Expect = 0.36
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T E+ + C+ C K F K+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 25.5 bits (57), Expect = 3.4
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGTGERHYECSECGKAFARK 25
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F + L +H++ HT EK +
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ T EK + C C K F KA +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 27.9 bits (63), Expect = 0.57
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F K +L H + H
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 25.5 bits (57), Expect = 4.0
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQK 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 6/143 (4%)
Query: 187 RLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNS 246
+ E+ ++ + L + + S S M L+ L
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQ-----FSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 247 SSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNM 306
S +L L Y+L LS + + + + +S + + + L +
Sbjct: 238 ESFNELLKLLR-YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 307 YVLSLSNMYVLSLSNMYVLSLSN 329
Y+ + L + +++ N
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVEN 319
Score = 35.9 bits (83), Expect = 0.017
Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 9/150 (6%)
Query: 198 SFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSN 257
N F S + V +S+ + VL+ + L + S + +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 317
+ + +S + + + L + Y+ + L + +++ N V
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323
Query: 318 S--------LSNMYVLSLS-NMLSSDPLPE 338
L ++ L LS N++ + L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
Score = 35.5 bits (82), Expect = 0.025
Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 207 LSNMYVLSLSNMYVLSS-SNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
L+N+ L + N+ S + L+++ L + + L + + + S+ +++ L+L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSL---SNMYVLSLSNMYVLSLSNMYVLSLSNM 322
L ++ LS++ L L + + S M L+ + S
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 323 YVLSLSNMLSSDPLPELL 340
+L L + E
Sbjct: 242 ELLKLLRYILELSEVEFD 259
Score = 33.2 bits (76), Expect = 0.11
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 221 LSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 280
LS V + S + + ++ M L LS + + + + + +N+ VL L
Sbjct: 2 LSCDASGVCDGRSR---SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 281 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSSDPLPEL 339
+ + ++ SL ++ L LS+ ++ SLS+ + LS++ L+L N + + L
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 340 LIKASS 345
++
Sbjct: 119 FPNLTN 124
Score = 28.9 bits (65), Expect = 2.5
Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNS---------SSNMYVLSLS 256
SL ++ L LS+ ++ S S+ + LS++ L+L + +N+ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 257 NMYVLS---------LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 307
N+ S L+++ L + + + + + + S+ +++ L+L L ++
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 308 VLSLSNMYVLSLSNMYVLSLS 328
LS++ L L + +
Sbjct: 192 ADILSSVRYLELRDTNLARFQ 212
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
P++C C K F L +H HT+EK +
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PYQC C K F Y L H H
Sbjct: 9 GEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.4 bits (59), Expect = 1.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C+ C K F + +H +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 25.6 bits (57), Expect = 3.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 190 YQCELCGKSFNNK 202
YQC CGKSF+
Sbjct: 13 YQCSECGKSFSGS 25
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 33 KRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
++ H+C C K F +H + HT EK +
Sbjct: 2 SSGSSGHGER---GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.24
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
+ E+ C+ C K F + +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 28.7 bits (65), Expect = 0.31
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
+ + HG + ++C C K FL + H + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 24.8 bits (55), Expect = 6.7
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 190 YQCELCGKSFNNK 202
++C CGK F
Sbjct: 13 HRCSDCGKFFLQA 25
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 38.5 bits (90), Expect = 0.002
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 205 FSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVL-SLSNMYVLSL 263
F +++ L LS + + + L L + L L S V SL N+ L +
Sbjct: 370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 264 SNMYVLSLSNMYVLSLSNMYVLSLS-NMYVLSLSNMYVLSLSNMYVLSLSN--------M 314
S+ + N LS++ VL ++ N + + L N+ L LS
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 315 YVLSLSNMYVLSLS-NMLSS 333
SLS++ VL++S N S
Sbjct: 489 AFNSLSSLQVLNMSHNNFFS 508
Score = 36.5 bits (85), Expect = 0.012
Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 15/149 (10%)
Query: 207 LSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN- 265
L L N + + SL + S S + L ++ L LS
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRN 357
Query: 266 -MYVLSLSNMYVLSLSNMYVLSLSN-------MYVLSLSNMYVLSLSNMYVLSLSNMYVL 317
+ + +++ L LS L L + L + + +S V
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 318 -SLSNMYVLSLSNMLSSDPLPELLIKASS 345
SL N+ L +S+ + + SS
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Score = 35.0 bits (81), Expect = 0.039
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNM------YVLSLSNMY 259
+L+N+ L LS+ + S L ++ + L + L+ S N ++
Sbjct: 147 NLTNLEHLDLSS-NKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 260 VLSLS-NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS 318
L+L N L++ + L+ + V L + N+ S + L +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 319 LSNMYVLSLSNMLSSDPLPEL 339
L+ + + + L +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNV 284
Score = 34.6 bits (80), Expect = 0.046
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 208 SNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMY 267
+ L LS + + S + VL LS+ + + + SLS++ L L+
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 268 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN---------MYVLS 318
+ SL+ LS++ L + SL N + L + L++++ Y +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 319 LSNMYVLSLSN 329
L+N+ L LS+
Sbjct: 148 LTNLEHLDLSS 158
Score = 31.5 bits (72), Expect = 0.47
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
S + VL LS + + + SLS++ L L+ + S + LS++ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSN---------MYVLSLSNMYVLSLSNMYVLSLSNMYV 316
+ SL N + L + L++++ Y +L+N+ L LS+ + S+ +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 317 LSLSNMYVLSLSNMLSSDPLPEL 339
L M +L+LS LS +P+ +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFI 192
Score = 28.5 bits (64), Expect = 3.7
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 237 LSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 296
L+ K+ N + L LS + L + S + VL LS + ++ + SLS
Sbjct: 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 297 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSS 333
++ L L+ + SL+ LS++ L L+S
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 38.7 bits (90), Expect = 0.003
Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 25/189 (13%)
Query: 165 RKLFLSKYSLFTHNK---KHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVL 221
+ L +S + + + + + + L +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409
Query: 222 SSSNMYVLSLSNMYVLSLSKVRLNSSSNM------YVLSLSNMYVLSLSNMYVLSLSNMY 275
+ M + +SL ++ + +N + L+ + ++ +N +
Sbjct: 410 RNPEM--KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467
Query: 276 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS--------LSNMYVLSL 327
+N LS SN L ++ + L N ++ L + L++
Sbjct: 468 DWEDANSDYAKQYENEELSWSN-----LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
Query: 328 S-NMLSSDP 335
+ N S
Sbjct: 523 ACNRGISAA 531
Score = 36.8 bits (85), Expect = 0.009
Identities = 20/158 (12%), Positives = 43/158 (27%), Gaps = 28/158 (17%)
Query: 206 SLSNMYVLSLSN-----MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYV 260
S+ M + S S +M N ++LS + + S +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701
Query: 261 LSLSN-------MYVLSLSNMYVLSLSNMYVLSLSN---------MYVLSLSNMYVLSLS 304
+ LSN L + + + + L +L + + +S
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761
Query: 305 N-------MYVLSLSNMYVLSLSNMYVLSLSNMLSSDP 335
L+ S + + + + +L P
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799
Score = 36.8 bits (85), Expect = 0.011
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 9/130 (6%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
+ + LSL+ + L+ + VLS ++ +S L+
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFG-------THSETVSGRLFGDEELTP 373
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 325
+ + M++ + + L + M + +SL + +
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM--KPIKKDSRISLKDTQIG 431
Query: 326 SLSNMLSSDP 335
+L+N ++
Sbjct: 432 NLTNRITFIS 441
Score = 35.6 bits (82), Expect = 0.022
Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 29/187 (15%)
Query: 178 NKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNM------YVLSL 231
K L ++RL+ L N + + +SL + + + +N + L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 232 SNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 291
+ + ++ + + +N LS SN L ++ + L N
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-----LKDLTDVELYNCP 502
Query: 292 VLS--------LSNMYVLSLSNMYVLSLSNMYV---------LSLSNMYVLSLS-NMLSS 333
++ L + L+++ +S + + + + + + N L
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 334 DPLPELL 340
P L
Sbjct: 563 FPASASL 569
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 35 SRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK 73
S S+ Q+ ++C+ C K F + +L HE+ HT
Sbjct: 2 SSGSSGQR---VYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 28.7 bits (65), Expect = 0.26
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G + Y+C+ C K F K SL H + H
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 190 YQCELCGKSFNNK 202
Y+C+ CGKSF K
Sbjct: 11 YECQECGKSFRQK 23
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C K F + L HE+ H
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 28.7 bits (65), Expect = 0.28
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ + EK + C C K F K+ H +H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 28.3 bits (64), Expect = 0.42
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C C K F+ K L H + H
Sbjct: 9 GEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C CGK+F K
Sbjct: 4 GSSGSGEKPYECNECGKAFIWK 25
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 35.6 bits (81), Expect = 0.004
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 18 RVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEK-EFENRRALKRHEKNHTQEKTFP 76
R+ P ++G ++++ K G C C+ + LK+H +N QE F
Sbjct: 8 RIRKEPPVYAAGSLEEQWYLEIVDK--GSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FT 64
Query: 77 CTVCLKMFKTKAQREEHI-ASHVTDSEFK 104
C C K ++ A + H+ A+H +
Sbjct: 65 CHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
Score = 27.5 bits (60), Expect = 2.6
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH 177
+ S C CQ + ++ + + C C K S + H
Sbjct: 30 VDKGSVS--CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.8 bits (78), Expect = 0.004
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P+ C C++ F + L +H+K HT +
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.4 bits (69), Expect = 0.068
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY C C++ F L H K H
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 24.6 bits (54), Expect = 6.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C C + F + +H H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P++C+ C K F + +L H + HT
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 30.2 bits (69), Expect = 0.064
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G +PY+C+ C K F K SL H + H
Sbjct: 8 GEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.5 bits (67), Expect = 0.16
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C C K F K HI H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 25.2 bits (56), Expect = 4.4
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 186 ERLH-----YQCELCGKSFNNK 202
Y+C+ CGK+F+ K
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQK 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.006
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 50/175 (28%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH--VTDS----- 101
+ +++ K T ++ + K + E A H + D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKEST------ISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 102 EFKCDQCP------YVAKRIKYLRYHMKKHRKEYSAYCEPCQEGF----FSRDKLETHNI 151
F D Y ++ +H+K E+ + F F K+ +
Sbjct: 458 TFDSDDLIPPYLDQYFYS---HIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 152 AKHGA-------------QPYQCETCRKL---------FLSKYSLFTHNKKHLPI 184
A + + +PY C+ K FL K K+ +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 31.0 bits (69), Expect = 0.66
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 25/118 (21%)
Query: 161 CETCRKLFLSK---------YSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMY 211
+ + + K S++ K L E LH +N +TF ++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTFDSDDLI 465
Query: 212 VLSLSN------MYVLSSSNMY--VLSLSNMYVLSLS----KVRLNSSSNMYVLSLSN 257
L + L + + ++ L K+R +S++ S+ N
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILN 522
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.5 bits (86), Expect = 0.006
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 8/90 (8%)
Query: 20 ENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEH--------CEKEFENRRALKRHEKNHTQ 71
+ +S +G + A +
Sbjct: 118 AQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASS 177
Query: 72 EKTFPCTVCLKMFKTKAQREEHIASHVTDS 101
+ C VC + + + H+ASH
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 32.5 bits (73), Expect = 0.26
Identities = 9/67 (13%), Positives = 16/67 (23%)
Query: 66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
N T + R + + ++C C V L H+ H
Sbjct: 144 GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Query: 126 RKEYSAY 132
+
Sbjct: 204 GLHGNMT 210
Score = 31.7 bits (71), Expect = 0.46
Identities = 9/74 (12%), Positives = 15/74 (20%), Gaps = 1/74 (1%)
Query: 2 PKSNLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGP-HKCEHCEKEFENRR 60
N+ G + P G ++C C +
Sbjct: 135 RSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPL 194
Query: 61 ALKRHEKNHTQEKT 74
L H +H
Sbjct: 195 DLDAHVASHGLHGN 208
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.7 bits (79), Expect = 0.009
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRH-EKNHT---QEKTFPCTVCLKMFKTKAQRE 91
+K++G ++C++C + + H + H ++ C C + K
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 92 EHIA-SHVTDSEFKCD 106
EH H + FK
Sbjct: 68 EHNLKYHPGEENFKLT 83
Score = 33.2 bits (75), Expect = 0.026
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 24/103 (23%)
Query: 89 QREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLET 148
+ + + ++C C + + +H+
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS--------------- 49
Query: 149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQ 191
Y C C L +L HN K+ P EE
Sbjct: 50 ---------SYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 29.7 bits (66), Expect = 0.45
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 142 SRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH-NKKHLPIEERLHYQCELCGKSFN 200
+ + K Y+C+ C H + +H + Y C C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 201 NKQTFSLSNM 210
S N+
Sbjct: 62 RYDALSEHNL 71
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
P++C C K F + L H+K H+ +
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
+ T E + C C K+F K Q H +H S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 28.2 bits (64), Expect = 0.43
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKH 181
G PY+C C K+F K L +H K H
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.5 bits (75), Expect = 0.012
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 46 PHKCEHCEKEFENRRALKRHEKN-HTQEKTFPCT 78
P++C C K F +L RH + HT EK +
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKA-----QREEH 93
+ T +K + C C K F R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 26.4 bits (59), Expect = 2.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 155 GAQPYQCETCRKLFLSKYSLFTH 177
G +PY+C C K F+ SL H
Sbjct: 9 GKKPYECIECGKAFIQNTSLIRH 31
Score = 24.4 bits (54), Expect = 9.2
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 187 RLH-----YQCELCGKSFNNK 202
Y+C CGK+F
Sbjct: 5 SSGTGKKPYECIECGKAFIQN 25
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 34.7 bits (79), Expect = 0.012
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 30 EVKKRSRKSTPQKLD------GPHKCEHCEKEFENRRALKRHEK 67
+ R + + D G H+C C + F + LK H +
Sbjct: 28 QGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFR 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 36.3 bits (84), Expect = 0.013
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 6/169 (3%)
Query: 175 FTHNK-KHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSN 233
N + + L G +L+ + N ++L + +
Sbjct: 369 LRDNALTTIHFIPSIPDIF-LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427
Query: 234 MYVLSLSKVRLNSSSNMYVLS-LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 292
+ +L L++ R +S S S ++ L L L + L LS++ V
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGE---NMLQLAWETELCWDVFEGLSHLQV 484
Query: 293 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLI 341
L L++ Y+ SL L+ + LSL++ + LS+ L L I
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533
Score = 36.3 bits (84), Expect = 0.016
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 197 KSFNNKQTFSLSNMYVLSLSN--MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLS 254
++ + L N+ VL+LS + L SSN Y L + + L K + +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 255 LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNM 314
L + L L + + ++ + + + L + ++L+ + LS + +L +
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL-IHLSENRLENLDIL 419
Query: 315 YVL-SLSNMYVLSLS-NMLSSDPLPEL 339
Y L + ++ +L L+ N SS +
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQT 446
Score = 35.6 bits (82), Expect = 0.022
Identities = 23/146 (15%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Query: 201 NKQTFS-LSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMY 259
N + F L ++ VL+L+ + ++ L N+ VL+LS L + L +
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341
Query: 260 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 319
+ L ++ + + L + L L + + ++ + + + L + ++L
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401
Query: 320 SNMYVLSLSNMLSSDPLPELLIKASS 345
+ + N L + + L++
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPH 427
Score = 34.8 bits (80), Expect = 0.042
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 204 TFSLSNMYVLSLS-NMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLS-----LSN 257
+ ++ +L L+ N + S + ++ L L + L + + LS+
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 317
+ VL L++ Y+ SL L+ + LSL++ + LS+ +N+ +L +S +L
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN--DLPANLEILDISRNQLL 539
Query: 318 SLSNMYVLSLSNMLSSD 334
+ + +SLS + +
Sbjct: 540 APNPDVFVSLSVLDITH 556
Score = 34.8 bits (80), Expect = 0.047
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 199 FNNKQTFSLSNMYVLSLS-NMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSN 257
F + +L +S N + + + + ++S SL + N
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---FGFHN 251
Query: 258 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 317
+ + L+ S++ L LS+ +V SL++ +L ++ VL+L+ + +++
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 318 SLSNMYVLSLSN 329
L N+ VL+LS
Sbjct: 312 GLDNLQVLNLSY 323
Score = 34.4 bits (79), Expect = 0.050
Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 203 QTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLS 262
+ LS+ +V SL++ + ++ VL+L+ + ++ N+ VL+LS +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 263 LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN---MYVLSLSNMYVLSL 319
L + L + + L ++ + + L + L L + + + ++ + L
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 320 SNMYVLSLSN 329
S +++L
Sbjct: 389 SGNKLVTLPK 398
Score = 27.5 bits (61), Expect = 7.9
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 243 RLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS--NMYV 300
L S L++ +L N+ +L L + + L L +++ L L +
Sbjct: 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111
Query: 301 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPEL 339
L + Y +L + L LS + SL S L L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.9 bits (73), Expect = 0.016
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV 98
+ T K F C C + F R +H+A H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS----RSDHLALHR 31
Score = 30.4 bits (69), Expect = 0.057
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 153 KH-GAQPYQCETCRKLFLSKYSLFTHNKKHL 182
G +P+QC C + F L H K+H+
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 28.8 bits (65), Expect = 0.25
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 35 SRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNH 69
+R ST K P +C C++ F L H K H
Sbjct: 3 TRGSTGIK---PFQCPDCDRSFSRSDHLALHRKRH 34
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.024
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ EK + C VC FK K + H+ SH
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 24.9 bits (53), Expect = 7.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNH 69
P+ C C F+ + + H ++H
Sbjct: 10 PYSCPVCGLRFKRKDRMSYHVRSH 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 35.3 bits (82), Expect = 0.029
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 23/152 (15%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
+++ L LS LS + SL + L LN SSN L L++
Sbjct: 98 CSASLTSLDLSRNS-LSGPVTTLTSLGSCSGL----KFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 266 MYVLSLSNMY---VLSLSNMYVLSLSNMYVLSLSNMY------VLSLSNMYVLSLSNMY- 315
+ VL LS + + + L++S V N+ L +S+
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212
Query: 316 ------VLSLSNMYVLSLS-NMLSSDPLPELL 340
+ S + L +S N LS +
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSG-DFSRAI 243
Score = 29.9 bits (68), Expect = 1.3
Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 51/186 (27%)
Query: 204 TFSLSNMYVLSLSN---MYVLSSSNMYVLSLSNMYVLSLSKVRLNSS--------SNMYV 252
L ++ LSL+ + + + L LS + S +
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 253 LSLSN---------MYVLSLSNMYVLSLS-NMYV----LSLSNMYVLSLSNMYVLSLSN- 297
L+LS+ +L + + VL LS N + SL+N+ +++ L LS+
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL----SASLLTLDLSSN 378
Query: 298 ---------MYVLSLSNMYVLSLSN--------MYVLSLSNMYVLSLS-NMLSSDPLPEL 339
+ + + L L N + + S + L LS N LS +P
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSS 437
Query: 340 LIKASS 345
L S
Sbjct: 438 LGSLSK 443
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.1 bits (70), Expect = 0.031
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 44 DGPHKCEH--CEKEFENRRALKRHEKNHTQ 71
D P+ C+H C+K F L RH+K+H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.4 bits (78), Expect = 0.036
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 132 YCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQ 191
Y E + S + H G + Q E ++ + L +H
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP----------IHLS 231
Query: 192 CELCGK 197
GK
Sbjct: 232 VLRQGK 237
Score = 29.8 bits (66), Expect = 1.1
Identities = 4/45 (8%), Positives = 14/45 (31%)
Query: 29 GEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK 73
+ + + + + + E E+ +N L+ +
Sbjct: 191 HSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.1 bits (59), Expect = 8.9
Identities = 7/53 (13%), Positives = 10/53 (18%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS 101
E K + H EK ++ I V
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 34.8 bits (80), Expect = 0.040
Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 3/175 (1%)
Query: 167 LFLSKYSLFTHNKKHLPIEERLHYQCE-LCGKSFNNKQTFSLSNM-YVLSLSNMYVLSSS 224
L N + L I + + + S LSN+ VL + S
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 225 NMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 284
+ + + L+L+ + +S + +L L + ++ + L +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 285 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPEL 339
SL + + + + + SNM + + + + + +ML +
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT-VSGTRMVHMLCPSKISPF 326
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.9 bits (72), Expect = 0.049
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
C+HC+ E + LK HE ++ +T C C + K + H
Sbjct: 17 LAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVLVK-DLKTHPEVC 65
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.4 bits (69), Expect = 0.056
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEK 73
H C C K + L+ H + HT E+
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 33.8 bits (78), Expect = 0.078
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYV--LSLSKVRLNSSSNMYVLSLSNMYVLSL 263
++ ++++ + +M S L M V ++L K + S+ S + L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285
Query: 264 SNMY-------VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMYVLSLSNMY 315
+ + ++ LS + L LS +L + + ++ LS+ N L L
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 316 VLSLSNMYVLSLS-NMLSSDPLPELLIK 342
+ +L N+ L LS + + + L ++
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLR 373
Score = 31.5 bits (72), Expect = 0.43
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 205 FSLSNMYVLSLSN-------MYVLSS-SNMYVLSLS-NMYVLSLSKVRLNSSSNMYVLSL 255
LS + L LS S+ ++ LS+ N L L L + N+ L L
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 256 SN--MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 313
S+ + N+ + +LS++ L+LS LSL + +L L+ +
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 314 MYVLS-LSNMYVLSLSN 329
L + VL+LS+
Sbjct: 418 QSPFQNLHLLKVLNLSH 434
Score = 31.1 bits (71), Expect = 0.52
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 198 SFNN-----KQTFS-LSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMY 251
SFN TFS L N+ L L+ + S + L L+ L +
Sbjct: 41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100
Query: 252 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 311
+ + L + S+ + + + + L L + ++ S+ + VL
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160
Query: 312 SN 313
N
Sbjct: 161 QN 162
Score = 29.6 bits (67), Expect = 1.5
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 230 SLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN---MYVLSLSNMYVLSLSNMYVLS 286
+L + VL+LS L+ SS L + L+L + +L + +L
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 287 LSNMYVLSLSNMYVLSLSNMYVLSLSN 313
LS + S+ SL M + LS+
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSH 509
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 29.9 bits (68), Expect = 0.088
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEK 73
P C +C K F L+RH++ HT EK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 32.7 bits (74), Expect = 0.11
Identities = 29/164 (17%), Positives = 44/164 (26%), Gaps = 20/164 (12%)
Query: 45 GPHKCEHCEKEFENRRALKRHEKN-HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
G KC C+K ++ + H F C VC K + E
Sbjct: 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTTVAVH-------GDEI 56
Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQ--- 160
C C K M + + T+ A AQ
Sbjct: 57 YCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD 116
Query: 161 -CETCRKLFLSKYSLFTHNKK-HLPIEERLHYQCELCGKSFNNK 202
C C + + + K H + ++C CGKS +
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWH-----KSCFRCAKCGKSLEST 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.16
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 26/67 (38%)
Query: 30 EVKKRSRKSTPQKLDGPHK--CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
E +++++K L+ ++ E EK N R +K F
Sbjct: 111 EWREKAKKD----LEEWNQRQSEQVEKNKINNRI---------ADKAF-----------Y 146
Query: 88 AQREEHI 94
Q + I
Sbjct: 147 QQPDADI 153
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.17
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 95 ASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRK 127
+S + FKC++C KYL H + H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 27.9 bits (61), Expect = 0.58
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQ 71
KC CEK F + L +HE+ HT+
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIHTR 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 69 HTQEKTFPCTVCLKMFKTKAQREEHIASH 97
+ ++ F C +CL F TKA H+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEK 73
CE+C K F+ + +L+ H + HT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.21
Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 25 GGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENR-RALKRHEKN-HTQEKTFPCTVCLK 82
GSSG + G C C LK+H + + C C K
Sbjct: 3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRK 62
Query: 83 MFKTKAQREEHI-ASHVTD 100
FK+KA H A H
Sbjct: 63 QFKSKAGLNYHTMAEHSAK 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.21
Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 43/143 (30%)
Query: 128 EYSAYCEPCQEGFFS-RDKLET-HN--IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLP 183
EY+A S +E + A P + E R S Y + N +
Sbjct: 1766 EYAALA--SLADVMSIESLVEVVFYRGMTMQVAVP-RDELGR----SNYGMIAINPGRVA 1818
Query: 184 I---EERLHYQCELCGKS---------FN--NKQTFSLSNMYVLS--------LSNMYVL 221
+E L Y E GK +N N+Q YV + ++N VL
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-------YVAAGDLRALDTVTN--VL 1869
Query: 222 SSSNMYVLSLSNMYV-LSLSKVR 243
+ + + + + LSL +V
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVE 1892
Score = 29.6 bits (66), Expect = 2.1
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 35/82 (42%)
Query: 169 LSKYSLFTH----NKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSN---MYVL 221
L++ + + N HLP +++ +SL N V+
Sbjct: 344 LTQEQVQDYVNKTNS-HLPAGKQVE-----------------------ISLVNGAKNLVV 379
Query: 222 SSSNMYVLSLSNMYVLSLSKVR 243
S SL + L+L K +
Sbjct: 380 SG---PPQSLYGL-NLTLRKAK 397
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 32.4 bits (74), Expect = 0.22
Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 13/207 (6%)
Query: 135 PCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK-KHLPIEERLH-YQC 192
F LE N + ++ ++L + LP E L +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV 252
L K ++ F +++ L LS + + + L L + L L S V
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 253 L-SLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN--------MYVLS-LSNMYVLS 302
SL N+ L +S+ + N LS++ VL ++ + + L N+ L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 303 LSNMYVLSLSNMYVLSLSNMYVLSLSN 329
LS + LS SLS++ VL++++
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Score = 31.2 bits (71), Expect = 0.50
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 197 KSFNNKQTFS-LSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSN------ 249
+SF + FS L+N+ L LS+ + S L ++ + L + L+ S N
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 250 --------MYVLSLS-NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 300
++ L+L N L++ + L+ + V L + N+ S +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 301 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIK 342
L + L+ + + + + +SS L + I+
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Score = 29.7 bits (67), Expect = 1.4
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 224 SNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 283
S++ L L+ + SL+ + S++ L + SL N + L + L++++
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 284 VLSLSNMYVLS-LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPEL 339
+ S S L+N+ L LS+ + S+ + L M +L+LS LS +P+ +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Score = 28.5 bits (64), Expect = 3.3
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 237 LSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 296
L+ K+ N + L LS + L + S + VL LS + ++ + SLS
Sbjct: 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 297 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSSDP 335
++ L L+ + SL+ LS++ L L+S
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.27
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKE 128
+KC QC Y + L H++KH E
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 24.8 bits (53), Expect = 5.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
P+KC C + L H + HT EK
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGEK 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 30.7 bits (70), Expect = 0.44
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLS- 264
LSN+ L + V S + L+++ +L +S + S + +L + + LS
Sbjct: 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 265 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 313
N + + + +L + L++ V + + L +
Sbjct: 146 NGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190
Score = 27.6 bits (62), Expect = 5.3
Identities = 17/106 (16%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 243 RLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS 302
+S++N+ ++++ ++L+N+ V L+ + N+ L+++N++ + + +
Sbjct: 31 GQSSTANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNYNP--ISG 86
Query: 303 LSNMYVLSLSN--------MYVLSLSNMYVLSLS-NMLSSDPLPEL 339
LSN+ L + + L+++ +L +S + L ++
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 29.7 bits (67), Expect = 0.57
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 28/110 (25%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
F C C + Y M + C+PC + C+
Sbjct: 31 FCCFDC---DSILAGEIYVMVNDK----PVCKPCYVKNHAV----------------VCQ 67
Query: 163 TCRKLFLSKYSLFTHNKK--HLPIEERLHYQCELCGKSFNNKQTFSLSNM 210
C + T+N H E + C C K ++ + M
Sbjct: 68 GCHNAIDPEVQRVTYNNFSWHASTE---CFLCSCCSKCLIGQKFMPVEGM 114
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 27.3 bits (60), Expect = 0.58
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 50 EHCEKEFENRRALKRHEKNHT 70
E+C + F +RR L RH+K HT
Sbjct: 8 ENCGRSFNDRRKLNRHKKIHT 28
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.4 bits (61), Expect = 0.65
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 47 HKCEHCEKEFENRRALKRHEKNHTQEKT 74
+ C C++EF + +AL H H +++
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRRDRA 34
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.8 bits (61), Expect = 0.70
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 44 DGPHKCEHCEKEFENRRALKRH 65
D P+ C+ C K ++NR L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 30.8 bits (69), Expect = 0.70
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
L + L L N + + + L+ + LSL +++ + L+ + L LS
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVL 325
++ L L+ L N+ VL L + L+ + +L + ++ ++
Sbjct: 185 NHISDLRA-----LAG-----LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
Query: 326 SLSNMLSSDPLPELLIK 342
+ + + +K
Sbjct: 235 TPEIISDDGDYEKPNVK 251
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.72
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKT 74
GSSG R + H+C C + F +L H+ H +K
Sbjct: 1 GSSGSSGSREK---------SHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.5 bits (55), Expect = 4.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKHL 182
+ +QC C ++F SL H H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHM 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 29.7 bits (67), Expect = 0.76
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 262 SLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
N+ LSL N+ ++S+SN+ L + L LS + +M L N+ L+LS
Sbjct: 47 EFVNLEFLSLINVGLISVSNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 322 MYVLSLSNMLSSDPLPEL 339
+ +S + L L
Sbjct: 105 NKLKDISTLEPLKKLECL 122
Score = 27.8 bits (62), Expect = 3.5
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV 252
E F N + SL N+ ++S+SN+ L + L LS + + N+
Sbjct: 42 EGLTAEFVNLEFLSLINVGLISVSNLPKLP--KLKKLELSENRIFGGLDMLAEKLPNLTH 99
Query: 253 LSLSNMYVLSLSNMYVLS-LSNMYVLSLSN 281
L+LS + +S + L L + L L N
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 28.7 bits (63), Expect = 0.76
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 38 STPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREE 92
+ P+ + ++C+HC+ + ++ L H H +E F+ +A+R+E
Sbjct: 17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE-----------FQKRAKRQE 60
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.79
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 44 DGPHKCEH--CEKEFENRRALKRHEKNHTQEK 73
D +C C K F+ R ++ H + H +++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.7 bits (59), Expect = 1.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 71 QEKTFPCTV--CLKMFKTKAQREEHIASHVTD 100
+KTF C C K FK + HI +H+ D
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 29.3 bits (66), Expect = 0.91
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 230 SLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 289
+ S++ L L R N + + LS N+ + S++N + L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTD-------EFEELEFLSTINVGLTSIAN--LPKLNK 65
Query: 290 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPEL 339
+ L LS+ V + N+ L+LS + LS + L L
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115
Score = 27.3 bits (61), Expect = 4.4
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV 252
E F + S N+ + S++N+ L+ + L LS+ V +V N+
Sbjct: 35 EGLTDEFEELEFLSTINVGLTSIANLPKLN--KLKKLELSDNRVSGGLEVLAEKCPNLTH 92
Query: 253 LSLSNMYVLSLSNMYVLS-LSNMYVLSLSN 281
L+LS + LS + L L N+ L L N
Sbjct: 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 29.6 bits (66), Expect = 1.0
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 20/86 (23%)
Query: 29 GEVKKRSRKSTPQKLDGPHKCEHCEKEFEN----------------RRALKRHEKNHTQE 72
+ R+R K G H K N RR L+++ +
Sbjct: 57 IHSRSRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKID 116
Query: 73 KTFPCTVCLKM----FKTKAQREEHI 94
K L +K K E I
Sbjct: 117 KHQYHEFYLGSKGNLYKNKTVLIEAI 142
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 230 SLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 289
L+ + S N + + V +LS + L +L + + L
Sbjct: 231 PLTQLTYFDCSV---NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 290 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSSDPL 336
+ L +++ L L + ++ + + + L L+ L+ +
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDV 335
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 326 SLSNMLSS------DPLPELLIKAS 344
+L + +S D P L IKA+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 29.6 bits (67), Expect = 1.3
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 204 TFS-LSNMYVLSLS-NMYVLSSSNMYVLSLSNMYVLSLSKVRL-----NSSSNMYVLSLS 256
FS L NM + + N S + L +S+ +L + + L L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201
Query: 257 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 316
+ + ++ +L S +Y L L + + + N + L + L L N + + +
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GL 260
Query: 317 LSLSNMYVLSLSN 329
L + V+ L
Sbjct: 261 PDLKLLQVVYLHT 273
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 1.6
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 27 SSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKN 68
++ +S K TP + C C F AL H ++
Sbjct: 97 AAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 1.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 47 HKCEHCEKEFENRRALKRHEKNHTQE 72
H C+ C K+F+++ LK H+ HT +
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.2 bits (54), Expect = 5.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
+ KT C +C K FK+K + H H D
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.9 bits (56), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 47 HKCEHCEKEFENRRALKRHEKNH 69
+KC CE+ F + AL RH++ H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 29.3 bits (66), Expect = 2.0
Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 224 SNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 283
+++ L+L + S+ L+ + VL L ++ + ++ + L + VL +S+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 284 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSS 333
L L N+ LS+++ + ++ + V L + L+LS N +S+
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 28.4 bits (62), Expect = 2.0
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQ 160
+KC++C K + C C HN +
Sbjct: 26 GMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC------------HNGKDAFSSASD 73
Query: 161 CETCRKLFLSKYSLFTHNKKHLPIEERLH---YQCELC-GKSFNNKQTFSLSNM 210
C C + + + +H ++C C K F ++ + + M
Sbjct: 74 CGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATM 127
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} SCOP: i.1.1.1
Length = 97
Score = 27.7 bits (61), Expect = 2.2
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 18/65 (27%)
Query: 63 KRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHM 122
KR K HT C C + H+ C +C Y AKR + +
Sbjct: 10 KRRNKTHT-----LCRRC-------GSKAYHLQKS------TCGKCGYPAKRKRKYNWSA 51
Query: 123 KKHRK 127
K R+
Sbjct: 52 KAKRR 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.5 bits (63), Expect = 2.4
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI 94
C C++ F+ + + H + C C +E H
Sbjct: 110 LMDCPQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHD 156
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 28.8 bits (65), Expect = 2.4
Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 206 SLSNMYVLSLSN---MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLS 262
SLS + L L+N +L ++ L +N ++S+V + + L+N +
Sbjct: 78 SLSTLRTLDLNNNYVQELLVGPSIETLHAAN---NNISRVSCSRGQGKKNIYLANNKITM 134
Query: 263 LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS-LSNMYVLSLSNMYVLSLSNMYVLSLSN 321
L ++ S + L L + +++ + + + L+L ++ + + +
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAK 192
Query: 322 MYVLSLSN 329
+ L LS+
Sbjct: 193 LKTLDLSS 200
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 2.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKE 128
FKC C Y + L+ HM +H E
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTE 35
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 28.1 bits (62), Expect = 2.5
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 76 PCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEP 135
PC C + + + D+ +C + C P
Sbjct: 56 PCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQ------------PLDSYKPGVDCAP 103
Query: 136 CQEGFFS 142
C G FS
Sbjct: 104 CPPGHFS 110
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 28.9 bits (65), Expect = 2.5
Identities = 9/93 (9%), Positives = 32/93 (34%)
Query: 221 LSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 280
+ + Y + + + ++L+N +++ N + L + S
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69
Query: 281 NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 313
+ +L+L+++ + + + L +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Score = 28.9 bits (65), Expect = 2.7
Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 8/150 (5%)
Query: 172 YSLFTHNKKHLPIEERLHYQCEL--------CGKSFNNKQTFSLSNMYVLSLSNMYVLSS 223
Y++ ++ I+ L Y C + + +L+N +++ N +
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
Query: 224 SNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMY 283
+ S + +L+L+ +++ + L + + L ++ +
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 284 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 313
VL L + SL + + LS+SN
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 28.6 bits (63), Expect = 3.0
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 23/114 (20%)
Query: 95 ASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH 154
+S ++ C QCP ++ H E A D T
Sbjct: 15 SSDISQPYVVCRQCPEYRRQA-AQPPHCPAPEGEPGAPQAL-------GDAPSTSVSLTT 66
Query: 155 GAQPYQCET---------CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
Q Y C C + + + + P QC +C + F
Sbjct: 67 AVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQ------QCAVCLQPF 114
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} PDB: 3jyv_Q* 1s1h_Q
Length = 158
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 114 RIKYLRYHMK-----KHRKEYSAYCEPCQEGFFSRDK 145
R YL Y K K K S + PC D
Sbjct: 89 RRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDI 125
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.1 bits (62), Expect = 3.4
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 34 RSRKSTPQKLDGPHKCEHCEKEFENR-RALKRHEKNHTQEK 73
+R + KC C + F LK H + +
Sbjct: 157 PTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDW 197
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 90
Score = 26.8 bits (60), Expect = 3.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 113 KRIKYLRYHMKKHRKEYS 130
+I+ L H++ H+K+YS
Sbjct: 31 NKIRRLTLHLELHKKDYS 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 27.7 bits (62), Expect = 4.1
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSN 265
+ L L + N+ +L + S + L + L ++N
Sbjct: 17 NAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNN 73
Query: 266 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS-LSNMYVLSLSN 313
+ + +L ++ L L+N ++ L ++ L+ L ++ L +
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Score = 27.3 bits (61), Expect = 4.8
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 243 RLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLS 302
+ ++ L L + + N+ +L + S+ + L L + L
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 70
Query: 303 LSNMYVLSLSNMYVLSLSNMYVLSLSN 329
++N + + +L ++ L L+N
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTN 97
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 28.2 bits (63), Expect = 4.1
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 18/142 (12%)
Query: 206 SLSNMYVLSLSN----------MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSL 255
++ +VL L+ + + +L LS++ + +++ L
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 256 SNMYVLSLS-NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNM 314
+++ L LS N + S++ + +++ + SL +LS S S + N
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL----ILSNSYNMGSSFGHTNFKDPDNF 267
Query: 315 --YVLSLSNMYVLSLS-NMLSS 333
L S + LS + + +
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFA 289
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 28.1 bits (63), Expect = 4.4
Identities = 23/134 (17%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 203 QTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSN----- 257
++ SL + + ++ + L + L L N + ++ L+ + + LSL +
Sbjct: 115 KSLSLEHNGISDINGLVHLP--QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD 170
Query: 258 MYVLS-LSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYV 316
+ L+ L+ + L LS ++ L + L N+ VL L + L+ + +L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
Query: 317 LSLSNMYVLSLSNM 330
+ ++ +++ +
Sbjct: 229 VKNTDGSLVTPEII 242
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.1 bits (54), Expect = 4.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 157 QPYQCETCRKLFLSKYSLFTHNKKH 181
+PY C C K F K+ + TH + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 24.4 bits (52), Expect = 8.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 46 PHKCEHCEKEFENRRALKRHEKNHT 70
P+ C C K F + ++ H + HT
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHT 27
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
RNA modification, thump domai; HET: EPE; 2.0A {Homo
sapiens}
Length = 530
Score = 28.3 bits (62), Expect = 4.7
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 24/195 (12%)
Query: 20 ENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV 79
+ + KK + +D + + C V
Sbjct: 58 DELILEVMNPPPKKIRLQELEDSIDNLSQNGEGRISVSHV-----GSTASKNSNLNVCNV 112
Query: 80 CLKMFKTKAQRE--EHIASHVTDSEFKCDQC-------PYVAKRIKYLRYHMKKHRKEYS 130
CL + + +++ + + V S F+ P ++ R +K+ + S
Sbjct: 113 CLGILQEFCEKDFIKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEMGKQS 172
Query: 131 AYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLF--THNKKHLPIEERL 188
D ++ K P E SLF + H E
Sbjct: 173 LS-------LGRDDIVQLKEAYKWITHPLFSEELGVPI-DGKSLFEVSVVFAHPETVEDC 224
Query: 189 HYQCELCGKSFNNKQ 203
H+ +C F +
Sbjct: 225 HFLAAICPDCFKPAK 239
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 28.4 bits (63), Expect = 4.8
Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 17/182 (9%)
Query: 172 YSLFTHNKKHLPIEERLHYQCEL--------CGKSFNNKQTFSLSNMYVLSLSN--MYVL 221
Y++ ++ I+ L Y C + + +L+N +++ N M L
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 66
Query: 222 SSS------NMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMY 275
++ + +L+L+++ + + + + L + + L ++ +
Sbjct: 67 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 276 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS-NMLSSD 334
VL L + SL + + LS+SN + + + + +++ L LS N L+
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 335 PL 336
L
Sbjct: 187 DL 188
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 27.9 bits (62), Expect = 4.8
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 2/139 (1%)
Query: 203 QTFSLSNMYVLSLSNMYVLSSSNMYVLSLS-NMYVLSLSKVRLNS-SSNMYVLSLSNMYV 260
Q +SN + L +++ + S +L + N+ + ++ + S +L L+ +
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166
Query: 261 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 320
+ N + N + L N S +L +S + SL + + +L
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 321 NMYVLSLSNMLSSDPLPEL 339
+ S N+ L +L
Sbjct: 227 KLRARSTYNLKKLPTLEKL 245
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 27.9 bits (62), Expect = 5.2
Identities = 21/107 (19%), Positives = 41/107 (38%)
Query: 230 SLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 289
+L+ + L LS + + V L +L Y + L + N VL L
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 290 MYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPL 336
S +S++ + L LSN+ + + +++ + L+ P
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 25.2 bits (55), Expect = 7.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 62 LKRHEKNHTQEKTFPCTVCLKMFKT-KAQREEHIASHVTDSEFKCDQC 108
++ E++ T +F C VC F +A + + +T F+C C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMT-GTFRCTFC 45
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 25.8 bits (57), Expect = 7.5
Identities = 12/74 (16%), Positives = 16/74 (21%), Gaps = 21/74 (28%)
Query: 130 SAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH 189
S PC E F+ +C C K + H
Sbjct: 3 SGSSGPCYENKFA----------------PRCARCSKTLTQGGVTYRDQPWHRE-----C 41
Query: 190 YQCELCGKSFNNKQ 203
C C +Q
Sbjct: 42 LVCTGCQTPLAGQQ 55
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 27.5 bits (60), Expect = 7.9
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 90 REEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETH 149
+ + + S V + + L +K C+ +E + K
Sbjct: 390 KLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIW 449
Query: 150 NIAKHGAQPYQCETCR-KLFLSKYSLFTHNKKHLPIEERLHYQCELC-GKSFNNKQTFSL 207
+ + C C ++F + + C+ C K+ N + F +
Sbjct: 450 HGRTKEEPAHYCSICEVEVFDLLFV-----TNESNSRKTYIVHCQDCARKTSGNLENFVV 504
Query: 208 SNMYVLS-LSNMY 219
Y + L +Y
Sbjct: 505 LEQYKMEDLMQVY 517
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 25.5 bits (56), Expect = 8.3
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 19/74 (25%)
Query: 130 SAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH 189
S PC + F+ C C++L + +H
Sbjct: 3 SGSSGPCYDNTFAN----------------TCAECQQLIGHDSRELFYEDRHFHEG---C 43
Query: 190 YQCELCGKSFNNKQ 203
++C C +S ++
Sbjct: 44 FRCCRCQRSLADEP 57
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1
PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I
1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I*
1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Length = 122
Score = 26.4 bits (57), Expect = 8.6
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 77 CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYV--AKRIKYLRYHMKKHRKEYSAYCE 134
C C M + +E + F+C C YV A R+ + + E + +
Sbjct: 7 CRDCNNMLYPREDKENNR------LLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ 60
Query: 135 PCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCEL 194
+ R+ L + C
Sbjct: 61 DIGSDPTLPRSDRECPKCHSRENVFFQSQQRR---------------KDTSMVLFFVCLS 105
Query: 195 CGKSFNNKQT 204
C F + Q
Sbjct: 106 CSHIFTSDQK 115
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q*
1s1h_Q
Length = 156
Score = 26.7 bits (59), Expect = 9.0
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 104 KCDQCPYVAKRIKYLRYHMK-----KHRKEYSAYCEPCQE 138
K + + R YL Y K K K + P
Sbjct: 79 KMHRTIVI--RRAYLHYIPKYNRYEKRHKNVPVHVSPAFR 116
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 27.2 bits (59), Expect = 9.9
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETC 164
C C++ F +R + P C
Sbjct: 299 CGKCKKNFRTRSWRAGSYLPLPHGSPNACAAA 330
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.376
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,558,262
Number of extensions: 247901
Number of successful extensions: 2239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 773
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)