BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4573
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 81/168 (48%), Gaps = 6/168 (3%)
Query: 97 EGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPF 156
E Y C +C + +L H + H E C C + F K H P+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 157 ECESCKKIFTYHKNT-----THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSY 210
+C C K F+ N TH G K + C C + S HLR H RTHT E+P C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 211 CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTG 258
CGK F R D L H R HTG++PY C CGK F+++ ALN H+R HTG
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 113 AYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTT 172
+ QA ++ Y C C + F R H P++C C K F+ K+ T
Sbjct: 9 SVAQAALEPGEKPYA--CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 173 -----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR 226
H G K ++C C + S + +LR H RTHT E+P C CGK F + L H R
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 227 IHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
HTG++PY C CGK F+++ L+TH+R HTGE PY C C + FS
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS 172
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 22/188 (11%)
Query: 45 ACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQ 104
AC C K L H ++HT K Y C C F + RH +H E YKC +
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE 82
Query: 105 CDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKI 164
C + A L+AH + H E C C + F + A H P++C C K
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 165 FTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEH 224
F S +++L H RTHT E+P C CGK F R DAL H
Sbjct: 143 F----------------------SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Query: 225 IRIHTGQR 232
R HTG++
Sbjct: 181 QRTHTGKK 188
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 45/73 (61%)
Query: 202 NERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
E+P C CGK F R D L EH R HTG++PY C CGK F+ K+ L H+R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 262 YHCEFCSERFSTK 274
Y C C + FS +
Sbjct: 78 YKCPECGKSFSQR 90
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 227 IHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+ G++PY C CGK F++ L H+R HTGE PY C C + FS K
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 45 ACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQ 104
AC C K + L+ H ++HT K Y C C F H +H E YKC +
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 105 CDHVAKKLAYLQAHMKKHRNEYTA 128
C + L H + H + T+
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKKTS 190
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
F+C++C + + L H+ H++ RP C YCGK F + + +H IHTG++P+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 238 ICGKGFTQKQALNTHKRGHTG 258
+CGK F+Q L TH R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFC 267
C CGK F+R L+ H+ IH+ RPY C+ CGK F QK + H HTGE P+ C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 268 SERFS 272
+ FS
Sbjct: 64 GKAFS 68
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 43 SLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
S C +C K S L H+ H+ ++ Y C C FH ++ +HT H E +KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
C + + L H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+ C+ICGK F + L+TH H+ PY C++C +RF K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 99 EYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFEC 158
+ C C K+ + L H+ H + C C + F +K+ + H P +C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 159 ESCKKIFTYHKN 170
+ C K F+ N
Sbjct: 61 QVCGKAFSQSSN 72
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 72 YACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCD 131
+ C IC F + H L H Y C C + + ++ H H E C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 132 LCQEGFFRKAKYETHN 147
+C + F + + TH+
Sbjct: 62 VCGKAFSQSSNLITHS 77
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F R D LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S + L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + L H+++HT K +AC IC +F E+ RHT H+ + +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F E RH H + ++C C + +L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 126 YTAYCDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + L H++ H + C +C F R TH
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 154 PPFECESCKKIF 165
PF C+ C + F
Sbjct: 61 KPFACDICGRKF 72
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F R D LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 61 PFACDICGRKFA 72
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S + L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQ 231
C CG+ F R D H +IH Q
Sbjct: 63 ACDICGRKFARSDERKRHTKIHLRQ 87
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHV 95
C +C + L H+++HT K +AC IC +F E+ RHT H+
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 72 YACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAY 129
YAC + C F E RH H + ++C C + +L H++ H E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 130 CDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 64 CDICGRKFARSDERKRHT 81
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R L H++ HT K + C IC+ F H +H E + C
Sbjct: 5 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 65 DICGRKFARSDERKRHTKIH 84
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 97 EGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAP 154
E Y C CD + L H++ H + C +C F R TH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 155 PFECESCKKIF 165
PF C+ C + F
Sbjct: 61 PFACDICGRKF 71
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F R D LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S + L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIH 228
C CG+ F R D H +IH
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHV 95
C +C + L H+++HT K +AC IC +F E+ RHT H+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 72 YACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAY 129
YAC + C F E RH H + ++C C + +L H++ H E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 130 CDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 65 CDICGRKFARSDERKRHT 82
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 97 EGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAP 154
E Y C CD + L H++ H + C +C F R TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 155 PFECESCKKIF 165
PF C+ C + F
Sbjct: 62 PFACDICGRKF 72
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F + L HIRIHTGQ+P+ C IC + F+Q+ +LN H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 261 PYHCEFCSERFST 273
P+ C+ C +F+T
Sbjct: 62 PFACDICGRKFAT 74
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S K +L H+R HT ++P C C + F + +L HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F H + H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKN-TTHLGI-----KFECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ N TH+ I F+C +C R S + L H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F T H +IH Q+
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + ++ L H+++HT K +AC IC +F TL + RHT H+ + +
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R K+ L H++ HT K + C IC+ F + H +H E + C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C L H K H
Sbjct: 66 DICGRKFATLHTRTRHTKIH 85
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F T D H H + ++C C + A L AH++ H E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 126 YTAYCDLCQEGF 137
CD+C F
Sbjct: 61 KPFACDICGRKF 72
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + L H++ H + C +C F ++A H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 154 PPFECESC-KKIFTYHKNTTHLGI 176
PF C+ C +K T H T H I
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKI 84
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+F C+ C R + +L +H RTHT+ERP C C K FRR D L +H IH+ ++P+ C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 237 EICGKGFTQKQALNTHKRGH 256
+ CGKGF Q + L HK H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEF 266
+C +CG+ F + L H R HT +RPY C+IC K F ++ L H+ H+ E P+ C+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 267 CSERF 271
C + F
Sbjct: 79 CGKGF 83
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERF 271
++ ++C+ CG+ FT+ L H+R HT E PY C+ C + F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 92 LSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKH 151
L + E+ C C K L H + H +E CD+C + F R+ H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 152 NAPPFECESCKKIF 165
PF+C+ C K F
Sbjct: 70 KEKPFKCQECGKGF 83
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCN 103
C C + L IH ++HT + Y C IC F H H E +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 104 QC 105
+C
Sbjct: 78 EC 79
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 26/68 (38%)
Query: 70 KRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAY 129
K + C C F H +H E Y C+ C ++ +L+ H H E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 130 CDLCQEGF 137
C C +GF
Sbjct: 76 CQECGKGF 83
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 42/70 (60%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
E+P C CGK F + L +H R HTG++PY C CGK F+Q L H+R HTGE PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 263 HCEFCSERFS 272
C C + FS
Sbjct: 62 KCPECGKSFS 71
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
++C C + S ++L+ H RTHT E+P C CGK F + L +H R HTG++PY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 238 ICGKGFTQKQALNTHKRGH 256
CGK F++ L+ H+R H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 155 PFECESCKKIFTYHKNT-----THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P++C C K F+ N TH G K ++C C + S + L+ H RTHT E+P C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 209 SYCGKGFRRGDALTEHIRIHTGQR 232
CGK F R D L+ H R H ++
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C C K S L+ H ++HT K Y C C F ++ +H +H E YKC +C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 106 DHVAKKLAYLQAHMKKHRNE 125
+ +L H + H+N+
Sbjct: 67 GKSFSRSDHLSRHQRTHQNK 86
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 68 LSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYT 127
+ K Y C C F + +H +H E YKC +C + + LQ H + H E
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 128 AYCDLCQEGFFR 139
C C + F R
Sbjct: 61 YKCPECGKSFSR 72
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 22/109 (20%)
Query: 96 VEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPP 155
+E YKC +C + + LQ H + H E C C + F + + + H P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 156 FECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNER 204
++C C K F S +HL H RTH N++
Sbjct: 61 YKCPECGKSF----------------------SRSDHLSRHQRTHQNKK 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 179 ECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR---IHTGQRPYV 235
EC CH+K +K +L++H R HT E+P C CGK + R + L EH ++ ++ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 236 CEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
C +C + F ++ L H HTGE+PY C CS++F K
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 130 CDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLGIK---------FEC 180
C C + F K + HN + PFEC C K + +N + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEH-IRIHTG 230
VC + LRLHM +HT E P CS C + F + L H I++H+G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 41 DGSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEF---HTLTEKDRHTLSHVVE 97
+ C C K+ SK LK+H + HT K + C C + L E + + E
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 98 GEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAP 154
+ C+ C ++ L+ HM H E C C + F +K ++H I+ H+ P
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFC 267
+G C C K F K L H R HTGE P+ C C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F R LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ + T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + L H+++HT K +AC IC +F E+ RHT H+ + +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F + RH H + ++C C + +L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 126 YTAYCDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R + L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + A L H++ H + C +C F R TH
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 154 PPFECESCKKIF 165
PF C+ C + F
Sbjct: 61 KPFACDICGRKF 72
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F R LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + L H+++HT K +AC IC +F E+ RHT H+ + +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F E RH H + ++C C + +L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 126 YTAYCDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R + L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + A L H++ H + C +C F R TH
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 154 PPFECESCKKIF 165
PF C+ C + F
Sbjct: 61 KPFACDICGRKF 72
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
C+++ +HL++H R HT E+P C + C + F R D L H R HTG +P+ C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 241 KGFTQKQALNTHKRGHTGEIPYHCEF--CSERFS 272
+ F++ L TH R HTGE P+ C + C ++F+
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 173 HLGIK-FECEV--CHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
H G K ++C+ C R+ S + L+ H R HT +P C C + F R D L H R HT
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 230 GQRPYVCEI--CGKGFTQKQALNTHKRGH 256
G++P+ C C K F + L H H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C+KR S L++H + HT K Y C C F + RH H ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 107 HVAKKLAYLQAHMKKHRNEYTAYCDL--CQEGFFR 139
+ +L+ H + H E C CQ+ F R
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 77 CLAEFHTLTEKDRHTLSHVVEGEYKCN--QCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQ 134
C + L+ H+ H E Y+C+ C+ + L+ H ++H C CQ
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 135 EGFFRKAKYETHNIQKHNAPPFECE--SCKKIFT 166
F R +TH PF C SC+K F
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F + L HIRIHTGQ+P+ C IC + F+Q LN H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 261 PYHCEFCSERFST 273
P+ C+ C +F+T
Sbjct: 62 PFACDICGRKFAT 74
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S K +L H+R HT ++P C C + F + L +HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKN-TTHLGI-----KFECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ N TH+ I F+C +C R S L H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F H +IH Q+
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + +GL H+++HT K +AC IC +F TL +DRHT H+ + +
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R K+ L H++ HT K + C IC+ F T ++H +H E + C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C L H K H
Sbjct: 66 DICGRKFATLHTRDRHTKIH 85
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F T D H H + ++C C + L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 126 YTAYCDLCQEGF 137
CD+C F
Sbjct: 61 KPFACDICGRKF 72
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + L H++ H + C +C F + H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 154 PPFECESC-KKIFTYHKNTTHLGI 176
PF C+ C +K T H H I
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKI 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F + +LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ + T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + L H+++HT K +AC IC +F E+ RHT H+ + +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F RH H + ++C C + +L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 126 YTAYCDLCQEGFFRKAKYETHN 147
CD+C F R + + H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + L H++ H + C +C F R TH
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 154 PPFECESCKKIF 165
PF C+ C + F
Sbjct: 61 KPFACDICGRKF 72
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFS 272
P+ C+ C +F+
Sbjct: 62 PFACDICGRKFA 73
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
E C R+ S ++L H+R HT ++P C C + F R D LT HIR HTG++P+ C+ICG
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 241 KGFTQKQALNTHKRGH 256
+ F + H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ N T H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE 99
C +C + L H+++HT K +AC IC +F E+ RHT H+ + +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
AC V C +R S L H++ HT K + C IC+ F H +H E + C
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 103 NQCDHVAKKLAYLQAHMKKH 122
+ C + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 68 LSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ + YAC + C F + RH H + ++C C + +L H++ H E
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 126 YTAYCDLCQEGFFRKAKYETH 146
CD+C F R + + H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 96 VEGEYKC--NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNA 153
+E Y C CD + L H++ H + C +C F R TH
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 154 PPFECESCKKIF 165
PF C+ C + F
Sbjct: 61 KPFACDICGRKF 72
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 180 CEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQ--RPYVCE 237
CE+C + HL H +H+ E+P C CG F+R D ++ H+R H G +PY+C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 238 ICGKGFTQKQALNTH-KRGHTG 258
CGKGF++ LN H K+ H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 158 CESCKKIF--TYHKN---TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNE--RPAVCS 209
CE C KIF YH N +H G K + C VC + K+ + H+R+H +P +C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 210 YCGKGFRRGDALTEHIR-IHTG 230
CGKGF R D L HI+ +H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 206 AVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI--PYH 263
C CGK FR L H H+G++PY C +CG F +K ++ H R H G + PY
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 264 CEFCSERFS 272
C+ C + FS
Sbjct: 68 CQSCGKGFS 76
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 24/46 (52%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+G CEICGK F LN HK H+GE PY C C RF K
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 69 SKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTA 128
S AC IC F + +RH LSH E Y C C K+ + H++ H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 129 --YCDLCQEGFFRKAKYETHNIQKHNAP 154
C C +GF R H Q H+ P
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSH--VVEGEYK 101
+AC +C K L H SH+ K Y+C +C F H SH V Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 102 CNQCDHVAKKLAYLQAHMKK 121
C C + +L H+K+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 179 ECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEI 238
+CEVC + S K+ L+ HMR HT +P C C +L +H+RIH+ +RP+ C+I
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 239 CGKGFTQKQALNTHKRGHTGE 259
C L H R HTG+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGD 90
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 205 PAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
P C CGK F R D L H+R HTG +PY C+ C +LN H R H+ E P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 265 EFC 267
+ C
Sbjct: 68 QIC 70
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 155 PFECESCKKIFTY-HKNTTHL----GIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P +CE C K F+ K TH+ G+K ++C+ C + + L H+R H++ERP C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 209 SYCGKGFRRGDALTEHIRIHTGQ 231
C R LT H+R HTG
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 42 GSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYK 101
G C VC K K LK HM+ HT K Y C C + ++H H E +K
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 102 CNQCDHVAKKLAYLQAHMKKHRNE 125
C C + ++ + L H++ H +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 130 CDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTT-HLGI-----KFECEVC 183
C++C + F RK K +TH P++C++C + HL I F+C++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 184 HRKLSTKNHLRLHMRTHTNE 203
+ L +H+R+HT +
Sbjct: 71 PYASRNSSQLTVHLRSHTGD 90
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 69 SKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTA 128
S + C +C F + H H YKC CD+ A + L H++ H +E
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 129 YCDLCQEGFFRKAKYETH 146
C +C ++ H
Sbjct: 66 KCQICPYASRNSSQLTVH 83
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
C + + +HL+ H+RTHT E+P C + CG F R D LT H R HTG RP+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 241 KGFTQKQALNTHKRGH 256
+ F++ L H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPY 262
C Y CGK + + L H+R HTG++PY C+ CG F + L H R HTG P+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 263 HCEFCSERFS 272
C+ C FS
Sbjct: 67 QCQKCDRAFS 76
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C K S LK H+++HT K Y C C +F E RH H ++C +CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 107 HVAKKLAYLQAHMKKH 122
+ +L HMK+H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 24/98 (24%)
Query: 105 CDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGF-FRKAKYETHNIQKHNA-PPFECESCK 162
C K ++L+AH++ H E +CD G+ F ++ T + +KH PF+C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 163 KIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTH 200
+ F S +HL LHM+ H
Sbjct: 73 RAF----------------------SRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
C + + +HL+ H+RTHT E+P C + CG F R D LT H R HTG RP+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 241 KGFTQKQALNTHKRGH 256
+ F++ L H + H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPY 262
C Y CGK + + L H+R HTG++PY C+ CG F + L H R HTG P+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 263 HCEFCSERFS 272
C+ C FS
Sbjct: 68 QCQKCDRAFS 77
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C K S LK H+++HT K Y C C +F E RH H ++C +CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 107 HVAKKLAYLQAHMKKH 122
+ +L HMK+H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 24/98 (24%)
Query: 105 CDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGF-FRKAKYETHNIQKHNA-PPFECESCK 162
C K ++L+AH++ H E +CD G+ F ++ T + +KH PF+C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 163 KIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTH 200
+ F S +HL LHM+ H
Sbjct: 74 RAF----------------------SRSDHLALHMKRH 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC--EICG 240
C + + +R H+ TH R VC+ CGK F L H +HTG++P+ C E CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 241 KGFTQKQALNTHKRGHTGEIPYHCEF--CSERFS 272
K F+ L TH R HTG+ PY C F C+++F+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 180 CEVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCE 237
C C + + L+ H HT E+P C++ CGK F L H+RIHTG RPYVC
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 238 I--CGKGFTQKQALNTH 252
C K F Q L +H
Sbjct: 97 FDGCNKKFAQSTNLKSH 113
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 130 CDLCQEGFFRKAKYETHNIQKHNAPPFEC--ESCKKIFTYHKNT-THLGI-----KFEC- 180
C C + F +K + H + PF+C E C K F+ N TH+ I + C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 181 -EVCHRKLSTKNHLRLHMRTHTNER 204
+ C++K + +L+ H+ TH +
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPYHCE 265
C GK F+ L HIR+HTG++P+ C CGK F + + L HKR HTGE P+ CE
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 266 F--CSERFST 273
F C RF+
Sbjct: 125 FEGCDRRFAN 134
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 160 SCKKIF-TYHKNTTHLGIKF--------------ECEVCHRKLSTKNHLRLHMRTHTNER 204
SC + F T H+ TH+ ++ EC + K L H+R HT E+
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 205 PAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGE 259
P C + CGK F R + L H R HTG++P+ CE C + F H HT +
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 123 RNEYTAYCDLC-QEGFFRKAKYETHN-IQKHNAP-PFECE--SCKKIFTYHKNT-----T 172
+N + Y + C +EG KAKY+ N I+ H PF C C KIF +N T
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 173 HLGIK-FECEV--CHRKLSTKNHLRLHMRTHTNERPAVCS 209
H G K F+CE C R+ + + + HM HT+++ S
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
C + + +HL+ H+RTHT E+P C++ C F R D LT H R HTG +P+ C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 241 KGFTQKQALNTHKRGH 256
+ F++ L H + H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 208 CSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPYH 263
C Y C K + + L H+R HTG++PY C E C F + L H R HTG P+
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 264 CEFCSERFS 272
C C+ FS
Sbjct: 78 CGVCNRSFS 86
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C+K S LK H+++HT K Y C+ C F E RH H ++C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 107 HVAKKLAYLQAHMKKHRN 124
+ +L HMK+H+N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 129 YCDL--CQEGFFRKAKYETHNIQKHNAPPFEC--ESCKKIFTYHKNTT-----HLGIK-F 178
YCD C + + + + + H P++C E C F T H G K F
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 179 ECEVCHRKLSTKNHLRLHMRTHTN 202
+C VC+R S +HL LHM+ H N
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 172 THLGIK-FEC--EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIH 228
TH G K ++C E C + + + L H R HT +P C C + F R D L H++ H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 204 RPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
RP C C + F R D LT HIRIHTGQ+P+ C IC + F++ L TH R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
E C R+ S + L H+R HT ++P C C + F R D LT HIR HT
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 231 QRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
RPY C + C + F++ L H R HTG+ P+ C C FS
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 155 PFEC--ESCKKIFTYHKNTT-----HLGIK-FECEVCHRKLSTKNHLRLHMRTHT 201
P+ C ESC + F+ T H G K F+C +C R S +HL H+RTHT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 38 VEQDGSLACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEF 81
V + AC V C +R L H++ HT K + C IC+ F
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
E+P C CGK F R L +H R+HTG++PY C CGK F+Q L H+R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
+ C C + S + L H R HT E+P C CGK F + L H RIHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
++PY C CGK F++ L H+R HTGE PY C C + FS
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%)
Query: 211 CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSER 270
CGK F H+ +H G RPY C +CGK F K L H + HTG PY C C++R
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 271 F 271
F
Sbjct: 75 F 75
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKG 242
C + + K+ HM H RP C CGK F+ L H++IHTG +PY C IC K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 243 FTQKQALNTH 252
F + + + H
Sbjct: 75 FMWRDSFHRH 84
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 161 CKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKG 214
C K FT+ + HLG++ + C VC +K K+HL HM+ HT +P C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 215 FRRGDALTEHI 225
F D+ H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+G + Y C+ CGK FT K + H H G PY C C ++F K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK 50
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 70 KRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAY 129
K Y C C F +++DRH H+ Y C C K +L HMK H
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 130 CDLCQEGFFRKAKYETH 146
C++C + F + + H
Sbjct: 68 CNICAKRFMWRDSFHRH 84
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 45 ACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLS 93
C VC K+ K L HMK HT K Y C+IC F RH S
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
C CGK F L++H R HTG++PY C+ CGK F Q+ L H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+++C+ C + S + L H RTHT E+P C CGK F + L H R+HTG P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERF 271
+R Y C+ CGK F+ L+ H+R HTGE PY C+ C + F
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 70 KRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKH 122
+RY C C F ++ +H +H E YKC++C + ++L H + H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P C C FR L H +HTG++PY C ICG F + L TH R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
++C+ C K +L H HT E+P C+ CG F R L H RIH+G++P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
+PY C+ C F K L +HK HTGE PY C C +F+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 69 SKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
K Y C C A F H H E Y+CN C + A L+ H + H E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 41 DGSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVE 97
D C+ C K L H HT K Y C+IC A+F+ HT H E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETH 146
YKC++C + L +H H E C++C F R A +TH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHK 253
+P C C + F R D LT HIR HTG++P+ C+ICG+ F + H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEH 224
F+C +C R S +HL H+RTHT E+P C CG+ F R D H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
+P+ C IC + F++ L TH R HTGE P+ C+ C +F+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 LACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRH-TLSHVV 96
C +C + L H+++HT K +AC IC +F E+ RH + H++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFE 157
++C C + +L H++ H E CD+C F R + + H +H P E
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHI-RIHTGQ 231
F CEVC R + + HL+ H R+HTNE+P C C + F R D L H +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTH-KRGHTGEI 260
VC C + F R + L H R HT ++PY C +C + FT++ L H ++ H+G +
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+VCE+C + F +++ L H R HT E PY C C+ F+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 43 SLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEF 81
S C VC++ + LK H +SHT K Y C +C F
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 176 IKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYV 235
+ + C VC R LR H H+ E+ C YC K F + T+H HTG+R Y
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 236 CEICGKGFTQKQALNTHKRGHTGEIP 261
C CGK F Q +++H + + P
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEF 266
+C C + + +L H IH+ ++ Y C C K F + H+ HTGE Y C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 267 CSERF 271
C + F
Sbjct: 84 CGKSF 88
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 37 EVEQDGSL--ACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSH 94
E+ DG + C VC + + L+ H H+ K+Y C C F + +H + H
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 95 VVEGEYKCNQCDHVAKKLAYLQAHMK 120
E Y+C C ++ +H+K
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSHIK 99
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 30/84 (35%)
Query: 72 YACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCD 131
Y C +C + LT RH H E +Y C C+ V Y H H E C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 132 LCQEGFFRKAKYETHNIQKHNAPP 155
C + F +H H+ P
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDP 106
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 25/66 (37%)
Query: 168 HKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRI 227
H N K+ C C + + H HT ER C CGK F ++ HI+
Sbjct: 41 HFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Query: 228 HTGQRP 233
Q P
Sbjct: 101 VHSQDP 106
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 227 IHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERF 271
I G+ Y+C +C + + +L H H+ E Y C +C + F
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 183 CHRKLSTKNHLRLHMRT---HTNERPAVCSYCG-----KGFRRGDALTEHIRIHTGQRPY 234
C ++ ++ L H+ + H + VC + G + F+ L H+R HTG++P+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 235 VC--EICGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFST 273
C E C K +++ + L TH R HTGE PY CE CS+ FS
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHI-RIHTGQRPYVCE 237
E C + S +L+ H+R+HT E+P +C + C K F +H R H+ ++PYVC+
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Query: 238 I--CGKGFTQKQALNTH 252
+ C K +T +L H
Sbjct: 133 LPGCTKRYTDPSSLRKH 149
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGH 256
CSYCGK FR L H+R HTG++PY CE C QK +L H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 19/32 (59%)
Query: 236 CEICGKGFTQKQALNTHKRGHTGEIPYHCEFC 267
C CGK F LN H R HTGE PY CEFC
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 179 ECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIH 228
EC C + + +L +H+RTHT E+P C +C + +L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 74 CSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKH 122
CS C F + + H +H E YKC C++ A + L+ H+++H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 41 DGSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
S C+ C K S L IH+++HT K Y C C
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 202 NERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGH 256
+ERP C++CGK +R L+ H R H G RP C CGK F + +N H + H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERF 271
+RP+ C CGK + L+ H+R H G P C C + F
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
F C C + + L H R H RP C CGK FR + H+++H +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSH 94
CN C K SGL H ++H + +C C F +E +RH H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPY 262
+CS+ CG + + L H+ HTG++P+ C E C KGFT L H HTGE +
Sbjct: 5 ICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 64
Query: 263 HCEF--CSERFSTK 274
C+ C RF+TK
Sbjct: 65 TCDSDGCDLRFTTK 78
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 59 LKIHMKSHTLSKRYAC--SICLAEFHTLTEKDRHTLSHVVEGEYKCNQ--CDHVAKKLAY 114
L+ H+ HT K + C C F +L RH+L+H E + C+ CD L +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD-----LRF 75
Query: 115 -LQAHMKKHRNEY 126
+A+MKKH N +
Sbjct: 76 TTKANMKKHFNRF 88
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPY 262
+CS+ CG + + L H+ HTG++P+ C E C KGFT L H HTGE +
Sbjct: 14 ICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 263 HCEF--CSERFSTK 274
C+ C RF+TK
Sbjct: 74 TCDSDGCDLRFTTK 87
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHI-RIHTGQR-PYVC 236
E C + ++ +HL H THT E+ C C F + +H R H + YVC
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 237 --EICGKGFTQKQALNTHKRGHTGEIPYHC--EFCSERFS 272
E CGK F + L H+ HT ++PY C E C +RFS
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 59 LKIHMKSHTLSKRYAC--SICLAEFHTLTEKDRHTLSHVVEGEYKCNQ--CDHVAKKLAY 114
L+ H+ HT K + C C F +L RH+L+H E + C+ CD A
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 115 LQAHMKKHRN----EYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFEC--ESCKKIFT 166
++ H + N Y + + C + F + + + H P+EC E C K F+
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G++PYVC+ CGK FTQ L+ H+R HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ E+P VC CGK F + L+ H R+HTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY+C CGK F QK LN H+R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P +C+ CGK F + L H RIHTG++P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+RPY+C +CGK FT + L H++ HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
ERP +C+ CGK F L +H +IHTG++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHI-RIHTGQ---RPYVCEICGKGFTQKQALNTH 252
RTHT E+P CS+C K FR+ L H R H +VC CGK FT++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTH-KRGHTGE-IP--YHCEFCSERFS 272
R HTG++PY C C K F QKQ L+ H KR H +P + C C + F+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIR-IHTGQRPYVCEICGKG 242
+P +C CGKGF R D L HI+ +HT +RP+ C++ G
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 232 RPYVCEICGKGFTQKQALNTH-KRGHTGEIPYHCEF 266
+PY+C+ CGKGF++ LN H K+ HT E P+ C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 174 LGIKFECEVCHRKLSTKNHLRLHMR-THTNERPAVCSYCGKGFRRG 218
+G + C+ C + S +HL H++ HT+ERP C G G
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR 226
K+ CE C + + L+ H+RTHT+ RP C+YC F+ LT+H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
Y+CE CG + L H R HT PYHC +C+ F TK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTK 42
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRG 255
+C CG ++ L +HIR HT RPY C C F K L H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C ICGK FT+K L+ H++ HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS CGK F + L H +IHTG++P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC +C + + K+ L +H + HT E+P+
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPS 41
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P VC YCGK F L H RIHTG++P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PYVC+ CGK F L H+R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F+QK L+ H+R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L+ H R HTG++P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+ C C + S K+ L H RTHT E+P+
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPS 41
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C +CGK F+ +Q+L+ H+R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS CGK F +L+ H RIH+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC VC + S + L +H R H+ ++P+
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
T ++P+ C+ C K F Q+ ALN+H+ HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 199 THTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ T E+P C C K FR+ AL H IHTG++P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+G++PY C+ CGK F+Q+ +L H+R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ E+P C CGK F + +L H R+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ CE CGK FTQ L++H+R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + L H R+HTG++P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
F+CE C ++ + + L H R HT E+P+ S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C CGKGF+++ ALN H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGKGF R AL H ++HTG++P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ ++P VC+ CGK FR+ L++H RIH+G++P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+G++P VC CGK F Q L+ H+R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C++C K FTQK L H++ HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC+VC + + K HL H +THT E+P+
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C C K F + L +H + HTG++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+GQ+PYVC CGK F K L H+R HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ ++P VC+ CGK F L H RIHTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 191 NHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIH 228
+HL+ H RTHT E+P CS+ C + F R D L+ H R H
Sbjct: 33 SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 204 RPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGH 256
R +CS+ CGK + + L H R HTG++P+ C C + F + L+ H+R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 232 RPYVCE--ICGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFS 272
R ++C CGK + + L H R HTGE P+ C + C RF+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS CGK F R L EH RIHTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F + LN H+R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ CE CGK FTQ L++H+R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
F+CE C ++ + +HL H R HT E+P+ S
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + L H R+HTG++P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
QRPY C CGK F K +L H+R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+RP C CGK F+ +L H R HTG++P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC C + TK+ L H R+HT E+P+
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPS 41
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK FR+ L H+RIHTG++P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C+ CGK F Q L +H R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
F+C+ C + HL H+R HT E+P+
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPS 41
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C C K FR G +LT H RIHTG++P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C++C K F +L H+R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
++C+VCH+ + L +H R HT E+P+
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G++PYVC CGK F +K TH+R HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ E+P VC+ CGK F R H RIHTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+GQR Y C+ CGK F QK +L H+R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ +R C CGK FR+ +LT H RIHTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC+ C + K L LH R HT P+
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY CE CGKG+ K L+ H++ HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGKG+ L H ++HTG+RP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++CE C + ++K +L +H + HT ERP+ S
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIP 261
Y C++CGK F+Q L TH+R HTGE P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
++C+VC ++ S +HL+ H R HT E+P+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C CGK F + L H R+HTG++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + LT H RIHTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
++C C + + +HL H R HT E+P+
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F +K L+ H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS CGK F + L H RIHTG+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC C + K+ L +H R HT E P+
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPS 41
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C CGK FT+K L+ H++ HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
E+P CS CGK F R L H + HTG+R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F QK L H+R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + LT+H RIHTG++P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C+ CGK F+QK +L H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + +L HIR+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+ C+ C + S K L +H+R HT P+
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FT + L TH++ HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F L H +IHTG++P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + T+H R+HTGQRP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F + H+R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F+Q L H+R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L H RIHTG++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY CE CGK F L H+R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F L EH RIHTG++P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK FR L+ H RIHTG++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F L+ H+R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.016, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTG 258
+G++PYVC CGK FT K L H+ HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
+ E+P VCS CGK F L H IHTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G++PY C CGK F+ K L H+R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+ E+P C+ CGK F L H RIHTG++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
+ C C + S+K++L +H R HT E+
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 234 YVC--EICGKGFTQKQALNTHKRGHTGEIPYHC--EFCSERFS 272
YVC E CGK F + L H+ HT ++PY C E C +RFS
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 44
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTG 258
VC + CGK F++ + L H HT Q PY C E C K F+ L H++ H G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTG---QRPYV 235
E C + N L++H +HT + P C + C K F L H ++H G ++
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 236 CEICGKGFT 244
C GK +T
Sbjct: 67 CSFVGKTWT 75
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+PY C CGK F+Q L H+R HTGE P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+P C+ CGK F + L H R+HTG++P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
FEC C + +TK++L +H RTHT E+P+
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C C K F K L H+R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS C K F L H R HTG++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 234 YVC--EICGKGFTQKQALNTHKRGHTGEIPYHC--EFCSERFS 272
YVC E CGK F + L H+ HT ++PY C E C +RFS
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 44
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTG 258
VC + CGK F++ + L H HT Q PY C E C K F+ L H++ H G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTG---QRPYV 235
E C + N L++H +HT + P C + C K F L H ++H G ++
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 236 CEICGKGFT 244
C GK +T
Sbjct: 67 CSFVGKTWT 75
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTG 258
RPY C +CGK F+ K + TH R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTG 230
RP CS CGK F + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGH---TGEIPYHCEFCSERF 271
+G CEICG QK +LN H+R H + + CEFC +RF
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAV---CSYCGKGFRRGDALTEH 224
+CE+C K L H R H A+ C +CGK F + D++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY CE CGKG+ ++ L+ H+R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
E+P C CGKG+ R L H R+H G++
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY CE CGKGF ++ L TH HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 203 ERPAVCSYCGKGFR-RGDALTEHIRIHTGQRP 233
E+P C CGKGF R D T H+ +HTG++P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHM-VHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
ERP C+ CGK F + L +H RIHTG++P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+RP+ C CGK F Q L H+R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 175 GIKFECEVCHRKLSTKNHLRLHMR-THTNERPAVCS--YCGKGFRRGDALTEHIRIHTGQ 231
G+ + C R S + +L H + H +++ C CGK F L EH+++H+
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 232 RPYVCEICG 240
R Y+CE G
Sbjct: 67 RDYICEFSG 75
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 211 CGKGFRRGDALTEHIRI-HTGQRPYVCE--ICGKGFTQKQALNTHKRGHTGEIPYHCEF 266
CG+ F L H + H Q+ + C CGK F K+ L H + H+ Y CEF
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G+ PY C CGK F +K L +H+R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ E P CS CGK F R D L H R H G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY CEICG F Q L +H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CG FR L H+RIHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK FR LT H IHTG++P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F L TH+ HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+PYVC CGK F K L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+P VC+ CGK FR L H R HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+PY+C CGK F+ +L TH+ HTGE P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+P +C+ CGK F +LT H IHTG++P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C CGK F+ LN H+R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F L +H RIHTG++P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C+ CGK F+Q L H+R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F + L +H R+HTG++P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC+ C + S HL H R HT E+P+
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPS 41
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK FR L +H R+H+G++P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C+ CGK F L H+R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G++PY C CGK F K L H+R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNE 203
+EC C + K+ L +H RTHT E
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ E+P C+ CGK F L H R HTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+G +PY C CGK F K L H R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 175 GIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
G+K + C C + +K++L +HMRTHT E+P+
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ +P CS CGK FR L H+R HTG++P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+G++PY C CGK FT K L HK HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ E+P C+ CGK F L H +HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F L H RIHTG++P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C CGK F+ L TH+R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
FEC C + S + L H R HT E+P+
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPS 41
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
F+C+ C RK S +HL+ H RTHT E+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+P+ C+ C + F++ L TH R HTGE
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+P C C + F R D L H R HTG++
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E P +CS CGK F L H +IHTG+RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+ P++C CGK FT K L H++ HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
F C C + + K +L +H + HT ERP+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C++C K F+ +L H+R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C C K F +LT+H R+H+G++P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC+VC + S L H R H+ E+P+
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPS 41
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F+ K L H R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+ C C + S+K++L +HMRTH+ E+P+
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P CS CGK F L H+R H+G++P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C CGK FT K L H++ HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
E+P CS CGK F L H + HTG+R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
++C C + + K+ LR+H + HT ER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
ER CS CGK F R L H RIHTG++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+R Y C CGK F +K L H+R HTGE P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+EC C + + K+ L +H R HT E+P+
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPS 41
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 204 RPAVC--SYCGKGFRRGDALTEHIRIHTGQR 232
RP +C SYCGK F R D L H R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 232 RPYVCEI--CGKGFTQKQALNTHKRGHTGE 259
RP++C CGK FT+ L HKR HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK FR L +H +H+G+RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C++CGK F L H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
++C+VC + +HL H H+ ERP+
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F+ + +L TH+ HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F +LT H IHTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+ PY C CGK F++K L +H+R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E P C CGK F R L H R H G++P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+EC C + S K L H RTH E+P+ S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK FRR L H IHTG++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F + L H+ HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+P C +CGK FTQ +L H R HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+P C CGK F + +L H+R HTG++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ CE CGKGF +H+R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGKGF H R H+G++P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
F+CE C + T + H R+H+ E+P+
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+R Y C CGK F QK L+ H+R H GE P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
ER CS CGK F + L+ H RIH G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+ + C CG+GFT K LN H+R HTGE P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C CG+GF L +H RIHTG++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 179 ECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+C C R + K+HL H R HT E+P+ S
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C+ICGK F + LN H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H+R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L H RIHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P +C+ CGK F L +H +IHT Q+P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY+C CGK FT + L H++ HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H+R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L H R+HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C +CGK F LN H R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHT 229
E+P C+ CGK F L +H+R+HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C CGKG+ ++ L+ H+R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
E+P C CGKG++R L H R+HTG++
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK + + LT+H R+HTG++P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C CGK + Q+ L H+R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
F+C C + + + HL H R HT E+P+ S
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C+ CGK F R L++H +IHTG++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIP 261
Y C CGK F++ L+ H++ HTGE P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 233 PYVCEICGKGFTQKQALNTHKRGHTGE 259
+VCE+C + F +++AL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
F CEVC R + + L+ H R+HTNE+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
VC C + F R +AL H R HT ++
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
++P C++CGK FR L H RIHTG++
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
Q+P+ C CGK F K L TH+R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 235 VCEICGKGFTQKQALNTHKRGHTGEIPY 262
CEICGK F LN HK H+GE PY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H+ HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L H IHTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C+ CGK F R L+ H +IHTG++P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIP 261
+ C CGK FT+K L+ H++ HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
FEC C + + K+ L +H + HT E+P+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPS 41
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
F CEVC R + + HL+ H R+HTNE+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 233 PYVCEICGKGFTQKQALNTHKRGHTGE 259
+VCE+C + F +++ L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H+ HTGE P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
++P C+ CGK F + L H IHTG++P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
+G++PY C +CG F +K ++ H R H G +
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ E+P C CG F+R D ++ H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK FTQ L H+ HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK F + L H IHTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY C CGK F + +L H+ H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C+ CGK FR +L H H+G++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C+ C K F Q LN HKR HTGE
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHT 229
ERP C+ CGKGF R L H+R+H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+RP+ C CGKGF ++ L H R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
F C C + S+K++L +H +TH E+P+
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+G++P+ C C K F+ K L H++ H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
E+P C CGK F L H RIHTG+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++P+ C CGK F+ L H+R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
T E+P C CGK FR LT H IHTG++
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
T ++PY C CGK F + L TH+ HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C C K F K L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNE 203
+EC C + +TK++L +H RTHT E
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+P VC +C + F AL H+RIHTG++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+PYVC C + F AL H R HTGE
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGH 256
+PYVCE CGK F Q L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
F CEVC R + + +L+ H R+HTNE+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 233 PYVCEICGKGFTQKQALNTHKRGHTGE 259
+VCE+C + F +++ L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTG 258
++PY C CGK F K L H+R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++PY C CGK F + L H+R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 199 THTNERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ T E+P CS CGK F R L H R H+G+
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHK-RGHTGEIP-YHCEFCSERFSTK 274
R H+G++PY C IC FTQ + H + HT + +HC C + K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 64 KSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVE--GEYKCNQCDHVAKKLAYLQAHMKK 121
++H+ K Y C IC A F H L E ++ C CD V + + L H++K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C+ C K F + +LT H RIHTG++P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIP 261
+ C C K FTQ +L H+R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
F+C C + + + L +H R HT E+P+
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPS 41
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 233 PYVCEICGKGFTQKQALNTHKR 254
PY+C CGK FTQ+ +L H+R
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQR 32
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
ER CS CGK F + +H RIHTG++P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+R + C CGK F Q H+R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRP 233
C CGK F R L +H R+H+G++P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIP 261
Y C+ CGK F++ L H+R H+GE P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
+PY C C K F+ K L H+R HTG P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+ C C + S K+ L +H R+HT +P+
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
+G+RP+VC IC FT K H + HT +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIHTGQ 231
E P C CGK F R D L H + H+GQ
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ PY C CGK F++K L +H++ H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
++PY CE CG F Q L H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 175 GIKFECEVCHRKLSTKNHLRLHMRTHTNER 204
G F CE C++ K+ L+ H+R HTNE+
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C YC K F+ +L H+RIHT ++
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRP 233
E+P C++ CG F R D L+ H R H+G +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 190 KNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR 226
K LR+H R H +RP C+YC ++ L++H++
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 178 FECEVCHRKLS-TKNHLRLHMRTHT-NERPAVCSYCGKGFRRGDALTEHIRI 227
+ C+VC R + N R ++ +H N + C +C K F R D +T H++I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 30 PRAKKCREVEQDGSLACNVCSKRCGSKSGLKIHMKS 65
P++ K + S CNVC+ R + S L H++S
Sbjct: 103 PQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 30 PRAKKCREVEQDGSLACNVCSKRCGSKSGLKIHMKS 65
P++ K + S CNVC+ R + S L H++S
Sbjct: 85 PQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 120
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 234 YVC--EICGKGFTQKQALNTHKRGHTG 258
YVC E CG+ F ++ LN HK+ HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKR-GHTGEIP 261
++PY C CGK F Q +L H R HTGE P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
T E P C+ CGK F L++H IH G+ P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+G++ + C CGK F+ K L H+R HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHI 225
+F C +C S+ L+ H+R E VC C K F D+ +H+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDHV 120
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 98 GEYKCNQCDHVAKK-LAYLQAHMKK-HRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPP 155
GE C C+ V +K L L+ HM+ + + C C++ F KA H + +H+A P
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 156 FECES 160
+ E+
Sbjct: 83 SDAEA 87
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 205 PAVCSYCGKGFRRGDALTEHIRIHTGQR 232
P C CGK F L H+RIH+G++
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHIRIH 228
ERP C+ CGK F R L EH++ H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|3PJ7|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|C Chain C, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|D Chain D, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
Length = 229
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 187 LSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR-IHTGQRPYVCEICGKGFTQ 245
+S H++L+M N+ C+ G+G T I+ + G P+ +I F
Sbjct: 5 ISENMHMKLYMEGTVNDHHFKCTSEGEGKPYEGTQTMKIKVVEGGPLPFAFDILATSFXS 64
Query: 246 KQALNTHKRGHTGEIP------YHCEFCSERFST 273
K +N HT IP + F ER +T
Sbjct: 65 KTFIN-----HTQGIPDFFKQSFPEGFTWERITT 93
>pdb|3PJ5|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
pdb|3PJ5|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
Length = 224
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 187 LSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR-IHTGQRPYVCEICGKGFTQ 245
+S H++L+M N+ C+ G+G T I+ + G P+ +I F
Sbjct: 6 ISENMHMKLYMEGTVNDHHFKCTSEGEGKPYEGTQTMKIKVVEGGPLPFAFDILATSFXS 65
Query: 246 KQALNTHKRGHTGEIP------YHCEFCSERFST 273
K +N HT IP + F ER +T
Sbjct: 66 KTFIN-----HTQGIPDFFKQSFPEGFTWERITT 94
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 PYVCEICGKGFTQKQALNTHKRGHTGEIP 261
PY C C K F+ K L H+R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
++C C + S K L +H R HT E+P+
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPS 41
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+P CS CGK F LT+H HT ++P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
++ + C+ CGK F AL H+R H GE
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGE 38
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 231 QRPYVCEICGKGFTQKQALNTH 252
+PY C+ICGK + + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 234 YVC--EICGKGFTQKQALNTHKRGHT 257
YVC E CG+ F ++ LN HK+ HT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ ++C++CGK F K L +HK HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,980,529
Number of Sequences: 62578
Number of extensions: 360939
Number of successful extensions: 1930
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 1035
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)