RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4573
(306 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 118 bits (299), Expect = 7e-33
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 155 PFECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P++C C K F+ K+ TH G K ++C C + S + +LR H RTHT E+P C
Sbjct: 49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 209 SYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCS 268
CGK F + L H R HTG++PY C CGK F+++ L+TH+R HTGE PY C C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 269 ERFSTKALVRHHVRSH 284
+ FS + + H R+H
Sbjct: 169 KSFSRRDALNVHQRTH 184
Score = 118 bits (299), Expect = 9e-33
Identities = 56/136 (41%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 155 PFECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P+ C C K F+ + TH G K ++C C + S K L H RTHT E+P C
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 209 SYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCS 268
CGK F + L H R HTG++PY C CGK F+Q L H+R HTGE PY C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 269 ERFSTKALVRHHVRSH 284
+ FS + + H R+H
Sbjct: 141 KSFSREDNLHTHQRTH 156
Score = 112 bits (283), Expect = 2e-30
Identities = 52/114 (45%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
G K + C C + S +HL H RTHT E+P C CGK F LT H R HTG
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
++PY C CGK F+Q+ L H+R HTGE PY C C + FS A +R H R+H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 111 bits (280), Expect = 5e-30
Identities = 69/212 (32%), Positives = 85/212 (40%), Gaps = 34/212 (16%)
Query: 56 KSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYL 115
S K YAC C F H +H E YKC +C L
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 116 QAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNT---- 171
H + H E P++C C K F+ N
Sbjct: 66 TRHQRTHTGE----------------------------KPYKCPECGKSFSQRANLRAHQ 97
Query: 172 -THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
TH G K + C C + S HLR H RTHT E+P C CGK F R D L H R HT
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 230 GQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
G++PY C CGK F+++ ALN H+R HTG+
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 105 bits (265), Expect = 7e-28
Identities = 42/97 (43%), Positives = 53/97 (54%)
Query: 188 STKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQ 247
+ E+P C CGK F R D L EH R HTG++PY C CGK F+ K+
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 248 ALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
L H+R HTGE PY C C + FS +A +R H R+H
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 76.3 bits (189), Expect = 6e-17
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 215 FRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTK 274
+ + G++PY C CGK F++ L H+R HTGE PY C C + FS K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 275 ALVRHHVRSH 284
+ H R+H
Sbjct: 63 KDLTRHQRTH 72
Score = 55.9 bits (136), Expect = 1e-09
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C C K L H ++HT K Y C C F + RH +H E YKC +C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 106 DHVAKKLAYLQAHMKKHRNE--YTAYCDLCQEGFFRKAKYETHNI----QKHNAPPFECE 159
+ A L+AH + H E Y C C + F + A H +K P++C
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAHQRTHTGEK----PYKCP 137
Query: 160 SCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
C K F+ N TH G K ++C C + S ++ L +H RTHT ++ +
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 111 bits (279), Expect = 9e-31
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 178 FECE--VCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRP 233
F C C+++ +HL++H R HT E+P C + C + F R D L H R HTG +P
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFSTKALVRHHVRSH 284
+ C+ C + F++ L TH R HTGE P+ C + C ++F+ + H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 59.8 bits (146), Expect = 1e-11
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 229 TGQRPYVCE--ICGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFSTKALVRHHVRSH 284
+ +RP++C C K + + L H R HTGE PY C+F C RFS ++ H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 54.4 bits (132), Expect = 1e-09
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 100 YKCNQ--CDHVAKKLAYLQAHMKKHRNE--YTAYCDLCQEGFFRKAKYETHNIQKHNA-P 154
+ C C+ KL++LQ H +KH E Y C+ F R + + H ++H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVK 65
Query: 155 PFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CG 212
PF+C++C++ F S +HL+ H RTHT E+P C + C
Sbjct: 66 PFQCKTCQRKF----------------------SRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 213 KGFRRGDALTEHIRIH 228
K F R D L H +H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 38.7 bits (91), Expect = 3e-04
Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 50/154 (32%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C+KR S L++H + HT K Y C C F + RH H ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 107 HVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFT 166
+ +L+ H + H E PF C
Sbjct: 74 RKFSRSDHLKTHTRTHTGE----------------------------KPFSCRW------ 99
Query: 167 YHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTH 200
C +K + + L H H
Sbjct: 100 --------------PSCQKKFARSDELVRHHNMH 119
Score = 30.2 bits (69), Expect = 0.33
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C ++ LK H ++HT K ++C
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 111 bits (279), Expect = 1e-30
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR---IHTGQRPY 234
EC CH+K +K +L++H R HT E+P C CGK + R + L EH ++ ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 235 VCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKA-LVRHHVRSH 284
C +C + F ++ L H HTGE+PY C CS++F K L H ++ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 94.9 bits (237), Expect = 1e-24
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 155 PFECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMR---THTNERP 205
EC +C K F H G K FEC C + K +L H + +E+
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 206 AVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHK-RGHTGE 259
CS C + FRR L H+ HTG+ PY C C + F QK+ L +H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 89.5 bits (223), Expect = 2e-22
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRG---H 256
+ C C K F L H R HTG++P+ C CGK + +K+ L H+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 257 TGEIPYHCEFCSERFSTKALVRHHVRSH 284
E + C C E F + +R H+ SH
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 42.5 bits (101), Expect = 2e-05
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFH---TLTEKDRHTLSHVVEGEYKC 102
C C K+ SK LK+H + HT K + C C + L E + + E + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 103 NQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKH 151
+ C ++ L+ HM H E C C + F +K ++H I+ H
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.6 bits (70), Expect = 0.24
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +G C C ++F +K ++ H R H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 107 bits (271), Expect = 8e-30
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
+ +CEVC + S K+ L+ HMR HT +P C C +L +H+RIH+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+RP+ C+IC L H R HTG+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 99.0 bits (248), Expect = 2e-26
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 199 THTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTG 258
+ + P C CGK F R D L H+R HTG +PY C+ C +LN H R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 259 EIPYHCEFCSERFSTKALVRHHVRSH 284
E P+ C+ C + + H+RSH
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 66.3 bits (163), Expect = 3e-14
Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 50/144 (34%)
Query: 93 SHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHN 152
S G +KC C + L+ HM+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV--------------------------- 34
Query: 153 APPFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCG 212
P++C++C + + L H+R H++ERP C C
Sbjct: 35 -KPYKCKTCDYAA----------------------ADSSSLNKHLRIHSDERPFKCQICP 71
Query: 213 KGFRRGDALTEHIRIHTGQRPYVC 236
R LT H+R HTG
Sbjct: 72 YASRNSSQLTVHLRSHTGDSGPSS 95
Score = 39.7 bits (94), Expect = 1e-04
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C VC K K LK HM+ HT K Y C C + ++H H E +KC C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 106 DHVAKKLAYLQAHMKKH 122
+ ++ + L H++ H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 36.6 bits (86), Expect = 0.001
Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 50/144 (34%)
Query: 65 SHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRN 124
S S + C +C F + H H YKC CD+ A + L H++ H +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 125 EYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLGIKFECEVCH 184
E PF+C+ C
Sbjct: 62 E----------------------------RPFKCQICPYAS------------------- 74
Query: 185 RKLSTKNHLRLHMRTHTNERPAVC 208
+ L +H+R+HT +
Sbjct: 75 ---RNSSQLTVHLRSHTGDSGPSS 95
Score = 26.6 bits (60), Expect = 3.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYAC 74
C +C + S L +H++SHT +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 108 bits (271), Expect = 3e-29
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 155 PFECESCKKIFTYHKN-TTHLGIK--------FECEVC-----HRKLSTKNHLRLHMRTH 200
+ C + F + H+ + F C R + L +HMR H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 201 TNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCE--ICGKGFTQKQALNTHK-RG 255
T E+P C++ C K + R + L H+R HTG++PY+CE C K F+ H+ R
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 256 HTGEIPYHCEF--CSERFSTKALVRHHVRSHH 285
H+ E PY C+ C++R++ + +R HV++ H
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 84.2 bits (209), Expect = 3e-20
Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 43/177 (24%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECE 159
+ + C L H+ H +K F C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEH---------------------IHGERK----EFVCH 38
Query: 160 SC-----KKIFT--YHKNT---THLGIK-FEC--EVCHRKLSTKNHLRLHMRTHTNERPA 206
+ F Y H G K +C E C + S +L+ H+R+HT E+P
Sbjct: 39 WGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 207 VCSY--CGKGFRRGDALTEHI-RIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTG 258
+C + C K F +H R H+ ++PYVC++ C K +T +L H + G
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 76.9 bits (190), Expect = 2e-17
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 203 ERPAVCSYCGKGFRRGDALTEHI---RIHTGQRPYVCEICG-----KGFTQKQALNTHKR 254
E C + F + L HI IH ++ +VC G + F + L H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 255 GHTGEIPYHCEF--CSERFSTKALVRHHVRSH 284
HTGE P+ C F C + +S ++ H+RSH
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 34.5 bits (80), Expect = 0.017
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 65/167 (38%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C+ + ++ L +HM+ HT K + C C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKC--------------------------TFEGC 75
Query: 106 DHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECE--SCKK 163
+L L+ H++ H E P+ CE C K
Sbjct: 76 RKSYSRLENLKTHLRSHTGE----------------------------KPYMCEHEGCSK 107
Query: 164 IFTY------HKNTTHLGIK-FECEV--CHRKLSTKNHLRLHMRTHT 201
F+ H+N TH K + C++ C ++ + + LR H++T
Sbjct: 108 AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 26.4 bits (59), Expect = 7.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 259 EIPYHCEFCSERFSTKALVRHHVRSHH 285
E + CS+ F ++ + HH+ S H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 105 bits (265), Expect = 7e-29
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
K F C+ C R + +L +H RTHT+ERP C C K FRR D L +H IH+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
++P+ C+ CGKGF Q + L HK H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 103 bits (259), Expect = 5e-28
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNT 251
++ +C +CG+ F + L H R HT +RPY C+IC K F ++ L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
H+ H+ E P+ C+ C + F + H H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 46.7 bits (112), Expect = 5e-07
Identities = 31/181 (17%), Positives = 45/181 (24%), Gaps = 78/181 (43%)
Query: 56 KSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYL 115
SG T+K E+ C C K L
Sbjct: 2 SSGSSGGRLPSK-----------------TKK-----------EFICKFCGRHFTKSYNL 33
Query: 116 QAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLG 175
H + H +E P+ C+ C K F
Sbjct: 34 LIHERTHTDE----------------------------RPYTCDICHKAFR--------- 56
Query: 176 IKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYV 235
R+ ++H +H + E+P C CGKGF + L H +H
Sbjct: 57 ---------RQDHLRDHRYIH----SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Query: 236 C 236
Sbjct: 104 A 104
Score = 39.3 bits (93), Expect = 2e-04
Identities = 23/128 (17%), Positives = 35/128 (27%), Gaps = 36/128 (28%)
Query: 89 RHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNI 148
L + E+ C C K L H + H +E
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE----------------------- 43
Query: 149 QKHNAPPFECESCKKIF------TYHKNTTHLGIK-FECEVCHRKLSTKNHLRLHMRTHT 201
P+ C+ C K F H+ H K F+C+ C + L +H H
Sbjct: 44 -----RPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Query: 202 NERPAVCS 209
+
Sbjct: 98 QTSSPTAA 105
Score = 34.7 bits (81), Expect = 0.006
Identities = 21/77 (27%), Positives = 28/77 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C C + L IH ++HT + Y C IC F H H E +KC +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 106 DHVAKKLAYLQAHMKKH 122
+ L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 100 bits (253), Expect = 6e-27
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
+ G K + C+ C + + K+ HM H RP C CGK F+ L H++IHT
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 230 GQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFS 272
G +PY C IC K F + + H+ + Y + +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTT 102
Score = 90.6 bits (226), Expect = 4e-23
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 197 MRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGH 256
+ ++ C CGK F H+ +H G RPY C +CGK F K L H + H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 257 TGEIPYHCEFCSERFSTK 274
TG PY C C++RF +
Sbjct: 61 TGIKPYECNICAKRFMWR 78
Score = 86.3 bits (215), Expect = 1e-21
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 155 PFECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
+ C+ C K FT+ + HLG++ + C VC +K K+HL HM+ HT +P C
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 209 SYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNT 251
+ C K F D+ H + + + Y + T+ ++
Sbjct: 69 NICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 34.0 bits (79), Expect = 0.011
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C VC K+ K L HMK HT K Y C+IC F RH Y+ +
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKA 97
Score = 30.5 bits (70), Expect = 0.19
Identities = 17/57 (29%), Positives = 21/57 (36%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C K KS HM H + Y C +C +F H H Y+CN C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 101 bits (255), Expect = 2e-26
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 155 PFECE--SCKKIFTYHKN-----TTHLGIK-FECE--VCHRKLSTKNHLRLHMRTHTNER 204
PF C+ C+K FT + TH G K F C+ C + +TK +++ H N +
Sbjct: 42 PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Query: 205 --PAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTG 258
VC + CGK F++ + L H HT Q PY C E C K F+ L H++ H G
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 259 EIPYHCEFCSERFSTK-ALVRHHVRSH 284
+ CS T ++H H
Sbjct: 162 YPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 94.6 bits (236), Expect = 1e-23
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 172 THLGIK-FECEV--CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIR 226
+ K + C C + L+ H+ HT E+P C C KGF LT H
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 227 IHTGQRPYVCE--ICGKGFTQKQALNTHKRGHTGE--IPYHCEF--CSERFSTKALVRHH 280
HTG++ + C+ C FT K + H Y C F C + F ++ H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 281 VRSH 284
SH
Sbjct: 126 QFSH 129
Score = 94.6 bits (236), Expect = 1e-23
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 196 HMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCE--ICGKGFTQKQALNT 251
+ +CS+ CG + + L H+ HTG++P+ C+ C KGFT L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 252 HKRGHTGEIPYHCE--FCSERFSTKALVRHHVRSHH 285
H HTGE + C+ C RF+TKA ++ H H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 61.8 bits (151), Expect = 1e-11
Identities = 37/214 (17%), Positives = 52/214 (24%), Gaps = 86/214 (40%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE--YKCNQ-- 104
C K S L H +HT GE + C+
Sbjct: 50 CEKGFTSLHHLTRHSLTHT------------------------------GEKNFTCDSDG 79
Query: 105 CDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFEC--ESCK 162
CD A ++ H + N + C E+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNI--------------------------KICVYVCHFENCG 113
Query: 163 KIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCS--YCGKGFRRGDA 220
K F H N L++H +HT + P C C K F
Sbjct: 114 KAFKKH----------------------NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR 151
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKR 254
L H ++H G + C H
Sbjct: 152 LKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 100 bits (252), Expect = 2e-26
Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 19/129 (14%)
Query: 155 PFECESCKKIF------TYHKNTTH---------LGIKFECEVCHRKLSTKNHLRLHMRT 199
+SC + F H H + EC + K L H+R
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 200 HTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRG 255
HT E+P C + CGK F R + L H R HTG++P+ CE C + F H
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 256 HTGEIPYHC 264
HT +
Sbjct: 145 HTSDKSGPS 153
Score = 100 bits (252), Expect = 2e-26
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 156 FECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERP---------A 206
K K + + C R ST + L H+ P
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPYHC 264
C GK F+ L HIR+HTG++P+ C CGK F + + L HKR HTGE P+ C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 265 EF--CSERFSTKALVRHHVRSH 284
EF C RF+ + + H+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 63.1 bits (154), Expect = 2e-12
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 211 CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEF---- 266
G + I Q + C + F+ L TH P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 267 -----CSERFSTKALVRHHVRSH 284
+ F K + +H+R H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH 85
Score = 50.4 bits (121), Expect = 6e-08
Identities = 35/180 (19%), Positives = 49/180 (27%), Gaps = 47/180 (26%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYK------- 101
C F T+ E H V G +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 102 --CNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFEC- 158
C + K L H++ H E PF C
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGE----------------------------KPFPCP 94
Query: 159 -ESCKKIFTYHKNT-----THLGIK-FECEV--CHRKLSTKNHLRLHMRTHTNERPAVCS 209
C KIF +N TH G K F+CE C R+ + + + HM HT+++ S
Sbjct: 95 FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 43.0 bits (102), Expect = 2e-05
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 239 CGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
G + + K ++ + C FST + HV H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 29.6 bits (67), Expect = 0.73
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKC- 102
C K +K L H++ HT K + C C F H +H E +KC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 103 -NQCDHVAKKLAYLQAHMKKHRNE 125
CD + + HM H ++
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSD 148
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 99.5 bits (249), Expect = 2e-26
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 178 FEC--EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYV 235
C + C + + +R H+ TH R VC+ CGK F L H +HTG++P+
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 236 CEI--CGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFSTKALVRHHVRSH 284
C CGK F+ L TH R HTG+ PY C F C+++F+ ++ H+ +H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 98.0 bits (245), Expect = 1e-25
Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 155 PFEC--ESCKKIFTYHKN-TTHLGI----KFECEVCHRKLSTKNHLRLHMRTHTNERPAV 207
C + C K+F + HL C C + + L+ H HT E+P
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 208 CSY--CGKGFRRGDALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPY 262
C++ CGK F L H+RIHTG RPYVC C K F Q L +H H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 82.2 bits (204), Expect = 8e-20
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
R C + C K FR A+ +H+ H G R +VC CGK F + L H+ HTGE
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 261 PYHCEF--CSERFSTKALVRHHVRSH 284
P+ C F C +RFS +R HVR H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 32.9 bits (76), Expect = 0.037
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 51/162 (31%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCN-- 103
C+K S ++ H+ +H + + C+ C F ++ RH L H E ++C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 104 QCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKK 163
C L+ H++ H + P+ C
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGD----------------------------RPYVCPF--- 97
Query: 164 IFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ C++K + +L+ H+ TH +
Sbjct: 98 -----------------DGCNKKFAQSTNLKSHILTHAKAKN 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 96.4 bits (241), Expect = 1e-25
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 178 FECEV--CHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYV 235
+ C V C R+ S L H+R HT ++P C C + F R D LT HIR HTG++P+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 236 CEICGKGFTQKQALNTHKRGHTGE 259
C+ICG+ F + H + H +
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQ 88
Score = 91.8 bits (229), Expect = 1e-23
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
ERP C C + F + +LT HIRIHTGQ+P+ C IC + F++ L TH R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 261 PYHCEFCSERFSTKALVRHHVRSH 284
P+ C+ C +F+ + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (169), Expect = 4e-15
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 155 PFEC--ESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPA 206
P+ C ESC + F+ + H G K F+C +C R S +HL H+RTHT E+P
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C CG+ F R D H +IH Q+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.7 bits (99), Expect = 2e-05
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHV 108
C +R L H++ HT K + C IC+ F H +H E + C+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 109 AKKLAYLQAHMKKH 122
+ + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 32.8 bits (76), Expect = 0.023
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSH 94
C +C + L H+++HT K +AC IC +F E+ RHT H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 26.7 bits (60), Expect = 3.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHT 67
C++C ++ K H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 94.4 bits (236), Expect = 6e-25
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNT 251
H H +++P C C FR L H +HTG++PY C ICG F + L T
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 252 HKRGHTGEIPY 262
H R H+GE PY
Sbjct: 64 HTRIHSGEKPY 74
Score = 75.2 bits (186), Expect = 1e-17
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHH 280
H + +PY C+ C F K L +HK HTGE PY C C +F+ A ++ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 281 VRSH 284
R H
Sbjct: 65 TRIH 68
Score = 64.4 bits (158), Expect = 1e-13
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
K ++C+ C K +L H HT E+P C+ CG F R L H RIH+G
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Query: 231 QRPY 234
++PY
Sbjct: 71 EKPY 74
Score = 32.4 bits (75), Expect = 0.023
Identities = 18/66 (27%), Positives = 22/66 (33%)
Query: 57 SGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQ 116
H K Y C C A F H H E Y+CN C + A L+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 117 AHMKKH 122
H + H
Sbjct: 63 THTRIH 68
Score = 29.3 bits (67), Expect = 0.32
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
C+ C K L H HT K Y C+IC
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 28.2 bits (64), Expect = 0.63
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 22/92 (23%)
Query: 114 YLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTH 173
+ H ++ CD CQ F K +H P+ C C F
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-------- 55
Query: 174 LGIKFECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ +L+ H R H+ E+P
Sbjct: 56 --------------NRPANLKTHTRIHSGEKP 73
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 94.4 bits (236), Expect = 8e-25
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
F+C++C + + L H+ H++ RP C YCGK F + + +H IHTG++P+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 238 ICGKGFTQKQALNTHKRGHTG 258
+CGK F+Q L TH R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 87.5 bits (218), Expect = 3e-22
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFC 267
C CGK F+R L+ H+ IH+ RPY C+ CGK F QK + H HTGE P+ C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 268 SERFSTKALVRHHVRSH 284
+ FS + + H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 53.2 bits (129), Expect = 1e-09
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ C+ICGK F + L+TH H+ PY C++C +RF K+ ++ H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 32.8 bits (76), Expect = 0.021
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C +C K S L H+ H+ ++ Y C C FH ++ +HT H E +KC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 106 DHVAKKLAYLQAHMKKH 122
+ + L H +KH
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 26.2 bits (59), Expect = 3.9
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECE 159
+ C C K+ + L H+ H + C C + F +K+ + H P +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 160 SCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHT 201
C K F S ++L H R HT
Sbjct: 62 VCGKAF----------------------SQSSNLITHSRKHT 81
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 94.1 bits (235), Expect = 9e-25
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG----QRPYVCEICGKGFTQKQ 247
RTHT E+P CS+C K FR+ L H + + +VC CGK FT++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 248 ALNTHKRGHTGEIPYHCEFC 267
+ H G E
Sbjct: 62 TMARHADNCAGPDGVEGENS 81
Score = 71.8 bits (177), Expect = 2e-16
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNE----RPAVCSYCGKGFRRGDALTEHIR 226
TH G K + C C + K L +H + + + VCS CGK F R + + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 227 IHTGQRPYVCEICGKGF 243
G E G
Sbjct: 69 NCAGPDGVEGENSGPSS 85
Score = 69.5 bits (171), Expect = 2e-15
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI----PYHCEFCSERFSTKAL 276
R HTG++PY C C K F QKQ L+ H + + + C C + F+ +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 277 VRHHVRSH 284
+ H +
Sbjct: 63 MARHADNC 70
Score = 42.9 bits (102), Expect = 6e-06
Identities = 16/116 (13%), Positives = 24/116 (20%), Gaps = 46/116 (39%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECE 159
Y C+ CD ++ L H K++ + F C
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVP------------------------AAFVCS 51
Query: 160 SCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGF 215
C K FT +N + H G
Sbjct: 52 KCGKTFTR----------------------RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 249 LNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
+ R HTGE PY C C + F K L+ H + +H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 33.7 bits (78), Expect = 0.010
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHT----LSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYK 101
C+ C K K L +H K + + + CS C F RH + +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 102 CNQC 105
Sbjct: 78 GENS 81
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 91.7 bits (229), Expect = 7e-24
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNT 251
R C CGK F L++H R HTG++PY C+ CGK F Q+ L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 252 HKRGHTGEIPY 262
H R HTG P
Sbjct: 65 HHRVHTGSGPS 75
Score = 72.1 bits (178), Expect = 1e-16
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHH 280
+R Y C+ CGK F+ L+ H+R HTGE PY C+ C + F ++ + H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 281 VRSH 284
R H
Sbjct: 66 HRVH 69
Score = 62.5 bits (153), Expect = 5e-13
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
+ ++C+ C + S + L H RTHT E+P C CGK F + L H R+HTG
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Query: 231 QRPY 234
P
Sbjct: 72 SGPS 75
Score = 36.3 bits (85), Expect = 0.001
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 245 QKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ + Y C+ C + FS + + H R+H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 30.1 bits (69), Expect = 0.14
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 54 GSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
GS +RY C C F ++ +H +H E YKC++C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 25.9 bits (58), Expect = 5.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
C+ C K S L H ++HT K Y C C
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 91.0 bits (227), Expect = 2e-23
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ C CGK FR L H H+G++PY C +CG F +K ++ H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 260 I--PYHCEFCSERFSTKALVRHHVRSHHS 286
+ PY C+ C + FS + H++ HS
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 90.6 bits (226), Expect = 3e-23
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG--QRPYV 235
CE+C + HL H +H+ E+P C CG F+R D ++ H+R H G +PY+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 236 CEICGKGFTQKQALNTH-KRGHTGE 259
C+ CGKGF++ LN H K+ H+G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 34.8 bits (81), Expect = 0.006
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE--YKCN 103
C +C K L H SH+ K Y+C +C F H SH Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 104 QCDHVAKKLAYLQAHMKK 121
C + +L H+K+
Sbjct: 70 SCGKGFSRPDHLNGHIKQ 87
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +G CE C + F + H SH
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSH 30
Score = 30.5 bits (70), Expect = 0.16
Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 49/140 (35%)
Query: 66 HTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+ S AC IC F + +RH LSH E Y C C K+ + H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 126 YTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLGIKFECEVCHR 185
P+ C+SC K F+
Sbjct: 62 --------------------------VGKPYICQSCGKGFSRP----------------- 78
Query: 186 KLSTKNHLRLHM-RTHTNER 204
+HL H+ + H+
Sbjct: 79 -----DHLNGHIKQVHSGPS 93
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 89.9 bits (224), Expect = 4e-23
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
F+C +C R S +HL H+RTHT E+P C CG+ F R D H I P + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 238 ICGKGFTQKQALNTHK---RGHTGE 259
+ ++ L + GE
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVGE 87
Score = 81.8 bits (203), Expect = 5e-20
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYH 263
+P C C + F R D LT HIR HTG++P+ C+ICG+ F + H+ +P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 264 CEFCSERFSTKA-LVRH--HVRSH 284
+ E S L ++
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 61.4 bits (150), Expect = 2e-12
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
+P+ C IC + F++ L TH R HTGE P+ C+ C +F+ + H H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 43.6 bits (104), Expect = 3e-06
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C +C + L H+++HT K +AC IC +F E+ RH ++
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKV 64
Query: 106 DHVAKKLAYLQAHMKKHR 123
+ + K +L+ + + +
Sbjct: 65 EELLSKNYHLENEVARLK 82
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 24/107 (22%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNE--YTAYCDLCQEGFFRKAKYETHNIQKHNAPPFE 157
++C C + +L H++ H E + CD+C F R + + H + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFA--CDICGRKFARSDERKRH-RDIQHILPIL 60
Query: 158 CESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNER 204
+ +++ + + HL +N ++ ER
Sbjct: 61 EDKVEELLSKN---YHL---------------ENE-VARLKKLVGER 88
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 89.5 bits (223), Expect = 5e-23
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 193 LRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTH 252
H+ E+P C CGK F R L +H R+HTG++PY C CGK F+Q L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 253 KRGHTGEIPY 262
+R HT
Sbjct: 62 QRIHTSGPSS 71
Score = 73.3 bits (181), Expect = 5e-17
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHH 280
+ IH+G++PY C CGK F++ L H+R HTGE PY C C + FS + + +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 281 VRSH 284
R H
Sbjct: 62 QRIH 65
Score = 62.5 bits (153), Expect = 4e-13
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
H G K + C C + S + L H R HT E+P C CGK F + L H RIHT
Sbjct: 8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Query: 231 QRPY 234
Sbjct: 68 GPSS 71
Score = 27.4 bits (62), Expect = 1.3
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 58 GLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
G H+ K Y C C F + +H H E YKC +C
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 25.9 bits (58), Expect = 3.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
C C K S L H + HT K Y C C
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 86.8 bits (216), Expect = 4e-22
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG--QRPYVCEICGKGFTQKQAL 249
RTH+ E+P C C F + + HI + C C +K L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 250 NTH-KRGHTGEIPY 262
H ++ H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 81.8 bits (203), Expect = 4e-20
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI--PYHCEFCSERFSTKALVR 278
R H+G++PY C IC FTQ + H E +HC C + K+ +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 279 HHVRSHHS 286
H+R HS
Sbjct: 63 VHLRKQHS 70
Score = 63.7 bits (156), Expect = 2e-13
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNE--RPAVCSYCGKGFRRGDALTEHIR-I 227
TH G K +EC +CH + + +++H+ E C +C R L H+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 228 HTGQRPY 234
H+ P
Sbjct: 69 HSYSGPS 75
Score = 39.8 bits (94), Expect = 5e-05
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 59 LKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE--YKCNQCDHVAKKLAYLQ 116
++H+ K Y C IC A F H L E + C CD V + + L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 117 AHMKKH 122
H++K
Sbjct: 63 VHLRKQ 68
Score = 36.3 bits (85), Expect = 0.001
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 115 LQAHMKKHRNE--YTAYCDLCQEGFFRKAKYETHNIQKH--NAPPFECESCKKIFTYHKN 170
+ + H E Y C +C F + + H +QKH N F C C +
Sbjct: 3 SGSSGRTHSGEKPYE--CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI----- 55
Query: 171 TTHLGIKFECEVCHRKLSTKNHLRLHMRT-HTNERP 205
+ K+ L +H+R H+ P
Sbjct: 56 -----------------ARKSDLGVHLRKQHSYSGP 74
Score = 34.4 bits (80), Expect = 0.005
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHT--LSKRYACSIC 77
C +C R +K+H+ ++ C C
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHC 51
Score = 28.6 bits (65), Expect = 0.53
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 CNVCSKRCGSKSGLKIHMKS-HTLSKRYA 73
C C KS L +H++ H+ S +
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 85.4 bits (212), Expect = 3e-21
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 188 STKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQ 245
+ R H + P C K + + L H+R HTG++PY C E C F +
Sbjct: 4 GSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59
Query: 246 KQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHHS 286
L H R HTG P+ C C+ FS + H++ H +
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 83.1 bits (206), Expect = 2e-20
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 172 THLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHT 229
H C + K S HL+ H+RTHT E+P C++ C F R D LT H R HT
Sbjct: 15 IHYCDYPGCTKVYTKSS---HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 230 GQRPYVCEICGKGFTQKQALNTHKRGHT 257
G +P+ C +C + F++ L H + H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 54.2 bits (131), Expect = 9e-10
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 215 FRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC--EFCSERFS 272
E RIH P C K +T+ L H R HTGE PY C E C RF+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 273 TKALVRHHVRSH 284
+ H R H
Sbjct: 59 RSDELTRHYRKH 70
Score = 42.2 bits (100), Expect = 1e-05
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 118 HMKKHRNEYTAYCDLCQEGFFR----KAKYETHNIQKHNAPPFEC--ESCKKIF------ 165
+ R + C + + + KA TH +K P++C E C F
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEK----PYKCTWEGCDWRFARSDEL 63
Query: 166 TYHKNTTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTN 202
T H H G K F+C VC+R S +HL LHM+ H N
Sbjct: 64 TRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 39.5 bits (93), Expect = 1e-04
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C+K S LK H+++HT K Y C+ C F E RH H ++C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 107 HVAKKLAYLQAHMKKHRN 124
+ +L HMK+H+N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 84.1 bits (209), Expect = 7e-21
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPY 234
+ C + + +HL+ H+RTHT E+P C + CG F R D LT H R HTG RP+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 235 VCEICGKGFTQKQALNTHKRGH 256
C+ C + F++ L H + H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 79.5 bits (197), Expect = 4e-19
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHT 257
T + CGK + + L H+R HTG++PY C + CG F + L H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 258 GEIPYHCEFCSERFSTKALVRHHVRSH 284
G P+ C+ C FS + H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 47.9 bits (115), Expect = 1e-07
Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 52/140 (37%)
Query: 89 RHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNI 148
+ T +H C K ++L+AH++ H E
Sbjct: 1 KRTATHT----CDYAGCGKTYTKSSHLKAHLRTHTGE----------------------- 33
Query: 149 QKHNAPPFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P+ C+ + C K + + L H R HT RP C
Sbjct: 34 -----KPYHCDW--------------------DGCGWKFARSDELTRHYRKHTGHRPFQC 68
Query: 209 SYCGKGFRRGDALTEHIRIH 228
C + F R D L H++ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 36.4 bits (85), Expect = 0.001
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCN 103
C K S LK H+++HT K Y C C +F E RH H ++C
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 104 QCDHVAKKLAYLQAHMKKH 122
+CD + +L HMK+H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 81.8 bits (203), Expect = 4e-20
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 200 HTNERPAVCSY--CGKGFRRGDALTEHIRI-HTGQRPYVCE--ICGKGFTQKQALNTHKR 254
+ C + CG+ F L H + H Q+ + C CGK F K+ L H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 255 GHTGEIPYHCEFCSERF 271
H+ Y CEF
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 71.0 bits (175), Expect = 3e-16
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 178 FECEV--CHRKLSTKNHLRLHMR-THTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQR 232
C+ C R S + +L H + H +++ C CGK F L EH+++H+ R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 233 PYVCEICGKGF 243
Y+CE G
Sbjct: 68 DYICEFSGPSS 78
Score = 59.1 bits (144), Expect = 7e-12
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 228 HTGQRPYVCEI--CGKGFTQKQALNTHKR-GHTGEIPYHCEF--CSERFSTKALVRHHVR 282
+G C+ CG+ F+ +Q LN HK+ H + + C C + F+ K ++ H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 283 SH 284
H
Sbjct: 62 LH 63
Score = 31.0 bits (71), Expect = 0.093
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 255 GHTGEIPYHCEF--CSERFSTKALVRHHVRSHH 285
G +G C+F C FS + + HH + H
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
C K K LK HMK H+ ++ Y C
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 27.5 bits (62), Expect = 1.4
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 49 CSKRCGSKSGLKIHMK-SHTLSKRYACS--ICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
C + ++ L H K H K ++C C F+ H H +Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 80.2 bits (199), Expect = 1e-19
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
+ ++ P CS C AL H RIH RP+ C C Q L+ H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 258 GEIPYHC 264
G++
Sbjct: 62 GDMSGPS 68
Score = 67.1 bits (165), Expect = 7e-15
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
+ P C C + K AL H+R H + P+ C +CS + + H++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 61.4 bits (150), Expect = 9e-13
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
+ +C C S+K LR+H R H +RP C+YC ++ L++H++ G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 231 QRPY 234
Sbjct: 63 DMSG 66
Score = 38.6 bits (91), Expect = 1e-04
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 32/79 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE--YKCN 103
C+ CS C SK+ L+IH + H + +KCN
Sbjct: 12 CSECSYSCSSKAALRIHERIHC------------------------------TDRPFKCN 41
Query: 104 QCDHVAKKLAYLQAHMKKH 122
C K+ + L HMKK
Sbjct: 42 YCSFDTKQPSNLSKHMKKF 60
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 155 PFECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
P +C C + H + F+C C ++L HM+ +
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Query: 209 S 209
S
Sbjct: 69 S 69
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN CS S L HMK S
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 75.9 bits (187), Expect = 7e-18
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 228 HTGQRPYVCEICGKGFTQKQALNTHKRGHT---GEIPYHCEFCSERFSTKALVRHHVRSH 284
+G CEICG QK +LN H+R H + + CEFC +RF V H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 285 HSSARLG 291
H + L
Sbjct: 62 HPALLLA 68
Score = 74.7 bits (184), Expect = 1e-17
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHT---GQRPYVCEICGKGFTQKQALNTHKRGH 256
+ C CG R+ +L H R H + CE CGK F + ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 257 TGEIPYHCE 265
+ +
Sbjct: 62 HPALLLAPQ 70
Score = 61.3 bits (149), Expect = 1e-12
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTN---ERPAVCSYCGKGFRRGDALTEHIRI-HTGQRP 233
+CE+C K L H R H C +CGK F + D++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 234 YVCEICGKGF 243
E G
Sbjct: 68 APQESSGPSS 77
Score = 43.2 bits (102), Expect = 5e-06
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLS---KRYACSICLAEFHTLTEKDRHTLSHVVEGEYKC 102
C +C C K+ L H + H + R+ C C F H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 103 NQC 105
+
Sbjct: 70 QES 72
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAY---CDLCQEGFFRKAKYETHNIQKHNAPPF 156
+C C ++ A L H +KH A C+ C + F + H + H A
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 157 ECESCKK 163
+
Sbjct: 68 APQESSG 74
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +G CE C KA + H R H
Sbjct: 1 GSSGSSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 33.9 bits (78), Expect = 0.008
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Query: 66 HTLSKRYACSICLAEFHTLTEKDRHTLSH-VVEGE--YKCNQCDHVAKKLAYLQAHMKKH 122
+ S C IC + H H + C C +K + AH K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 123 RNEYTAYC 130
Sbjct: 62 HPALLLAP 69
Score = 28.9 bits (65), Expect = 0.40
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 45 ACNVCSKRCGSKSGLKIHMKSHTLSKRYAC 74
C C KR + H + A
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 74.2 bits (183), Expect = 3e-17
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 207 VCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPY 262
VC + CGK F++ + L H HT Q PY C E C K F+ L H++ H G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 263 HCEFCSERFSTKA-LVRHHVRSH 284
+ CS T ++H H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 43.0 bits (102), Expect = 6e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 157 ECESCKKIFTYHKNT-----THLGIK-FEC--EVCHRKLSTKNHLRLHMRTHTNERPAVC 208
E+C K F H +H +EC E C ++ S + L+ H + H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 209 SYCGKGFRRGDALTEHIR 226
C + +H+
Sbjct: 65 DSCSFVGKTWTLYLKHVA 82
Score = 37.6 bits (88), Expect = 5e-04
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACS--ICLAEFHTLTEKDRHTLSHVVEGEYKCNQCD 106
C K + LK+H SHT Y C C F + RH H K + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 107 HVAKKLAYLQAHMKK 121
V K H+ +
Sbjct: 69 FVGKTWTLYLKHVAE 83
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 73.0 bits (180), Expect = 6e-17
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRI--HTGQRPYVCEICGKGFTQKQALNTHKRG 255
T E C C + + H + Y C C K FT+K + H +
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 256 HTG 258
Sbjct: 63 IHK 65
Score = 69.9 bits (172), Expect = 8e-16
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKR--GHTGEIPYHCEFCSERFSTKALVRHHVRS 283
G+ Y C++C + +T H Y C FC + F+ K + HV+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 284 HH 285
H
Sbjct: 63 IH 64
Score = 39.8 bits (94), Expect = 5e-05
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 155 PFECESCKKIFTYHKN-------TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHT 201
+ C+ C +++T+ N + +K + C C ++ + K+++ H++
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 253 KRGHTGEIPYHCEFCSERFSTKA-LVRHHVRSHHS 286
+ GE Y C+ CS ++ + RH+V SH
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR 36
Score = 31.4 bits (72), Expect = 0.039
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 66 HTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGE--YKCNQCDHVAKKLAYLQAHMKKHR 123
Y C +C + ++ RH ++ Y C C + + AH+K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 71.0 bits (175), Expect = 3e-16
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTH-KRGHTGEI 260
R VC C + F R + L H R HT ++PY C +C + FT++ L H ++ H+G +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 61.7 bits (151), Expect = 6e-13
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKA-LVRHHVRSH 284
R +VCE+C + F +++ L H R HT E PY C C+ F+ + L+RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 61.3 bits (150), Expect = 9e-13
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHI-RIHTG 230
F CEVC R + + HL+ H R+HTNE+P C C + F R D L H +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 27.8 bits (63), Expect = 0.62
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
C VC++ + LK H +SHT K Y C +C
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.0 bits (172), Expect = 8e-16
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 188 STKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQ 245
N+L ++ RP C C + F R D LT HIRIHTGQ+P+ C IC + F++
Sbjct: 4 HPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 246 KQALNTHKRGHT 257
L TH R HT
Sbjct: 62 SDHLTTHIRTHT 73
Score = 55.8 bits (135), Expect = 1e-10
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 226 RIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRS 283
+ RPY C E C + F++ L H R HTG+ P+ C C FS + H+R+
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 284 H 284
H
Sbjct: 72 H 72
Score = 51.9 bits (125), Expect = 2e-09
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 181 EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
E C R+ S + L H+R HT ++P C C + F R D LT HIR HT
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 29.6 bits (67), Expect = 0.24
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 45 ACNV--CSKRCGSKSGLKIHMKSHTLSKRYACSICLAEF----HTLTEKDRHT 91
AC V C +R L H++ HT K + C IC+ F H T HT
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 29.6 bits (67), Expect = 0.24
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 55 SKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKL 112
+ L ++ + YAC + C F E RH H + ++C C +
Sbjct: 5 PMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 113 AYLQAHMKKH 122
+L H++ H
Sbjct: 63 DHLTTHIRTH 72
Score = 28.4 bits (64), Expect = 0.67
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 22/92 (23%)
Query: 110 KKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHK 169
+ L ++ Y + C F R + H PF+C C + F
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF---- 59
Query: 170 NTTHLGIKFECEVCHRKLSTKNHLRLHMRTHT 201
S +HL H+RTHT
Sbjct: 60 ------------------SRSDHLTTHIRTHT 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 66.8 bits (164), Expect = 6e-15
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHI-RIHTGQRPYVCEICGKGFTQ 245
+ + +P +C CGKGF R D L HI ++HT +RP+ C++ G +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 61.4 bits (150), Expect = 7e-13
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTH-KRGHTGEIPYHCEFCSERFST 273
+ +PY+C+ CGKGF++ LN H K+ HT E P+ C+ S+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.0 bits (102), Expect = 3e-06
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 170 NTTHLGIK-FECEVCHRKLSTKNHLRLHM-RTHTNERPAVCSYCGKGFRRG 218
++ K + C+ C + S +HL H+ + HT+ERP C G G
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 30.6 bits (70), Expect = 0.058
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHHS 286
+ + PY C+ C + FS + H++ H+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 24.5 bits (54), Expect = 9.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 46 CNVCSKRCGSKSGLKIHMKS-HTLSKRYACSICLAEF 81
C C K L H+K HT + + C + ++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++P+ C+ICGK F + LN H HT E P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 55.2 bits (134), Expect = 9e-11
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK F L H +HT ++P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C++C + ++ L H HT E+P+ S
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C+ C + F ++ + H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 25.5 bits (57), Expect = 3.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C++C K +S L H HT K S
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 64.4 bits (156), Expect = 3e-13
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 188 STKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRI-----HTGQRPYVCEICGKG 242
S+ + +L+ T C C + LT H+
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 243 FTQKQALNTHKRGHTGEIPYHCEFCSERFSTKA-LVRHHVRSHH 285
+K++L + + C +C F + L H +++ H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 51.7 bits (123), Expect = 1e-08
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 168 HKNTTHLGIKFECEVCHRKLSTKNHLRLHMR-----THTNERPAVCSYCGKGFRRGDALT 222
+ + KF C+ C T L +HM N + R +L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTH--KRGHTGEIPY 262
E Q+ C CG F Q L+ H K H ++
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 38.6 bits (89), Expect = 4e-04
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 43 SLACNVCSKRCGSKSGLKIHMKS--HTLSKRYACSICLAEFHTLTEKD---RHTLSHVVE 97
C CS + L +HM H + + + K +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 98 GEYKCNQCDHVAKKLAYLQAHMKKHR 123
KC C H + L L HM K +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 38.2 bits (88), Expect = 5e-04
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 55 SKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRH--TLSHVVEGEYKCNQCDHVAKKL 112
S S K++ T + ++ C C A + TL E H H + ++ + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 113 ---AYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKH 151
L K + C C F H I+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 29.0 bits (64), Expect = 0.72
Identities = 14/112 (12%), Positives = 24/112 (21%), Gaps = 17/112 (15%)
Query: 90 HTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQ 149
+ +++C C L L HM Y
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNN------------ 56
Query: 150 KHNAPPFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHT 201
P + K+ + +C C + L +HM
Sbjct: 57 ----PKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 4e-13
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY CE CGKG+ K L+ H++ HTGE P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGKG+ L H ++HTG+RP
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY CE C + +++K + H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 33.7 bits (78), Expect = 0.005
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++CE C + ++K +L +H + HT ERP+ S
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 26.7 bits (60), Expect = 1.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K SK L +H K HT + S
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY CE CGKGF ++ L TH HTGE P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGKGF L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY CE C + F + + H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++CE C + + L H HT E+P+ S
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 5.8
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K + L H HT K S
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C CGK FT+K L+ H++ HTGE
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P CS CGK F R L H + HTG+R
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + K+ L +H ++HT ER + S
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ K+ + H +SH
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 27.9 bits (63), Expect = 0.50
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K KSGL IH +SHT + S
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 5e-13
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+RPY+C +CGK FT + L H++ HTGE P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T ERP +C+ CGK F L +H +IHTG++P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.005
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ ++ + H + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 33.2 bits (77), Expect = 0.006
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + + C VC + + +++L H + HT E+P+ S
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C VC K +S L H K HT K S
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 6e-13
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FT + L TH++ HTGE P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 9e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F L H +IHTG++P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ ++ + H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + + +++L H + HT E+P+ S
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K +S L H K HT K S
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 7e-13
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+R Y C CGK F +K L H+R HTGE P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T ER CS CGK F R L H RIHTG++P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + +EC C + + K+ L +H R HT E+P+ S
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.005
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE Y C C + F+ K+ + H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 25.2 bits (56), Expect = 4.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K KS L +H + HT K S
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 7e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+ ++PY CE CGKG+ ++ L+ H+R H GE
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C CGKG+ R L H R+H G++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ + E PY CE C + ++ + + H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ K ++CE C + + + +L +H R H E+ + S
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K + L +H + H K S
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 7e-13
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C ICGK FT+K L+ H++ HTGE P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P CS CGK F + L H +IHTG++P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ K+ + H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC +C + + K+ L +H + HT E+P+ S
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C++C K KS L +H + HT K S
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 8e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+ P++C CGK FT K L H++ HTGE P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E P +CS CGK F L H +IHTG+RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G F C C + + K +L +H + HT ERP+ S
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + F+ K + H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 25.5 bits (57), Expect = 3.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K K+ L IH K HT + S
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 9e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++P+ C C K F K L H+R HTGE P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P CS C K F L H R HTG++P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 6e-04
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K FEC C + +TK++L +H RTHT E+P+ S
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + F+TK+ + H R+H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 25.9 bits (58), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K +KS L +H ++HT K S
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-13
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C +CGK F LN H R HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F L +H+R+HT +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C VC + HL H+R HT E + S
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.5 bits (75), Expect = 0.010
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
TGE PY C C + F A + H+R H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 25.2 bits (56), Expect = 4.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CNVC K + L H++ HT S
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G++ Y C++CGK F+Q L TH+R HTGE P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E+ C CGK F + L H R+HTG++P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE Y C+ C + FS + ++ H R H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ +G K ++C+VC ++ S +HL+ H R HT E+P+ S
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+VC K S L+ H + HT K S
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-13
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+R Y C CGK F QK L+ H+R H GE P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T ER CS CGK F + L+ H RIH G++P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE Y C C + F K+ + H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + +EC C + K+ L +H R H E+P+ S
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K KS L +H + H K S
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++PY C CGK F+QK L+ H+R HTGE P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ + E+P C+ CGK F + L+ H R HTG++P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C C + FS K+++ H R+H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + S K+ L H RTHT E+P+ S
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K KS L H ++HT K S
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.6 bits (148), Expect = 1e-12
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C C K F K L H+R HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C+ C K F L H R HTG+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+TK+ + H R+H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
+ G K +EC C + +TK++L +H RTHT E
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.46
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYAC 74
CN C K +KS L +H ++HT +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C CGK F +K L+ H+R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P CS CGK F + L H RIHTG+ P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.003
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC C + K+ L +H R HT E P+ S
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F K+ + H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K KS L +H + HT S
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TGQRPY C CGK F K +L H+R HTGE P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T +RP C CGK F+ +L H R HTG++P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG+ PY C C + F TK+ + H RSH
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + +EC C + TK+ L H R+HT E+P+ S
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K +KS L H +SHT K S
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
G++PY C CGK F+ K L H R H+GE P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ E+P CS CGK F L H+R H+G++P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 36.8 bits (86), Expect = 4e-04
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + S+K++L +HMRTH+ E+P+ S
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 36.0 bits (84), Expect = 6e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE PY C C + FS+K+ + H+R+H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 27.9 bits (63), Expect = 0.50
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K SKS L IHM++H+ K S
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++P+ C CGKGF+++ ALN H + HTGE P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGKGF R AL H ++HTG++P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C C + S ++ L +H + HT E+P+ S
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + FS ++ + H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.9 bits (58), Expect = 2.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K +S L +H K HT K S
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C CGK FT K L H++ HTGE
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P CS CGK F L H + HTG+R
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ K+ +R H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + K+ LR+H + HT ER + S
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K KS L+IH K HT + S
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY+C CGK F QK LN H+R HTGE P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P +C+ CGK F + L H RIHTG++P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + K+HL H R HT E+P+ S
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F K+ + H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 24.8 bits (55), Expect = 6.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K KS L H + HT K S
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C CGK F QK L H+R HTGE P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGK F + LT+H RIHTG++P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.005
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ KA + H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + + K +L H R HT E+P+ S
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.3
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K K+ L H + HT K S
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C++C K F +L H+R HTGE P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C C K FR G +LT H RIHTG++P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C+ C + F + + H R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 32.1 bits (74), Expect = 0.015
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C+VCH+ + L +H R HT E+P+ S
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+VC K S L +H + HT K S
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY+C CGK FT + L H++ HT + P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P +C+ CGK F L +H +IHT Q+P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ ++ + H + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C C + + +++L H + HT ++P+ S
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY CE CGK F L H+R HTGE P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK F L EH RIHTG++P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY+CE C + F + ++ H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 32.5 bits (75), Expect = 0.010
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + CE C + + L+ H R HT E+P+ S
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++P+ CE CGK FTQ L++H+R HTGE P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C CGK F + L H R+HTG++P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE P+ CE C +RF+ + + H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+CE C ++ + + L H R HT E+P+ S
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C KR S L H + HT K S
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 1e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++P+ CE CGKGF +H+R H+GE P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
+ + E+P C CGKGF H R H+G++P G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE P+ CE C + F T + H RSH
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCG 212
+ G K F+CE C + T + H R+H+ E+P+ S G
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K + S H +SH+ K S
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F L TH+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK FR LT H IHTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F + + H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 31.3 bits (72), Expect = 0.030
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + ++L H HT E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.0
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K + S L H HT K S
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C +CGK F+ +Q+L+ H+R H+G+ P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P CS CGK F +L+ H RIH+G++P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
TGE PY C C + FS + + H R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC VC + S + L +H R H+ ++P+ S
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 25.2 bits (56), Expect = 4.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+VC K + L +H + H+ K S
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++PYVC+ CGK F L H+R HTGE P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P VC YCGK F L H RIHTG++P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C++C + F A + H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C+ C + L H R HT E+P+ S
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 7.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K G + L H + HT K S
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 2e-12
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG +PYVC CGK F K L H R HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.7 bits (138), Expect = 3e-11
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T +P VC+ CGK FR L H R HTG+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG PY C C + F +K+ + H R+H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
+ G+K + C C + +K++L +H RTHT E
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYAC 74
CN C K SKS L IH ++HT +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C+ CGK F L H+R H+GE P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 4e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK FR L +H R+H+G++P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY+C+ C + F + + H R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 31.0 bits (71), Expect = 0.039
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C+ C + + L H R H+ E+P+ S
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++PY C CGKG+ ++ L+ H+R HTGE
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 56.4 bits (137), Expect = 3e-11
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C CGKG++R L H R+HTG++
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C C + + + + H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + L H R HT E+ + S
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 25.6 bits (57), Expect = 3.6
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K + L H + HT K S
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.9 bits (146), Expect = 2e-12
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TGQ+P+ C CGK F K L TH+R HTGE
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T ++P C++CGK FR L H RIHTG++
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K FEC C + K +L H R HT E+ S
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG+ P+ C C + F K + H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 25.6 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K +K L H + HT K S
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.9 bits (146), Expect = 2e-12
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG +PY C C K F+ K L H+R HTG P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T +P CS C K F L H R HTG +P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G+K + C C + S K+ L +H R+HT +P+ S
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG PY C C++ FS K+ + H RSH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 26.3 bits (59), Expect = 1.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C+K KS L +H +SHT K S
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG +PY+C CGK F+ +L TH+ HTGE P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T +P +C+ CGK F +LT H IHTG++P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG PY C C + FS + + H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 32.5 bits (75), Expect = 0.011
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G+K + C C + S + L H HT E+P+ S
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L H HT K S
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++P+ C CGK F+ L TH+R HTGE P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F L H RIHTG++P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K FEC C + S + L H R HT E+P+ S
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + FS + + H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 24.4 bits (54), Expect = 8.1
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K S L H + HT K S
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG + + C CGK FT+K L+ H++ HTGE P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T + C+ CGK F R L+ H +IHTG++P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K FEC C + + K+ L +H + HT E+P+ S
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG + C C + F+ K+ + H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 25.2 bits (56), Expect = 4.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K KS L +H K HT K S
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C++C K F+ +L H+R H+GE P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C C K F +LT+H R+H+G++P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.006
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C+ C + FS A + H R H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 31.3 bits (72), Expect = 0.033
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC+VC + S L H R H+ E+P+ S
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++P+ C CGK F+ LN H+R HTGE P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK F L +H RIHTG++P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + FS + H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 33.6 bits (78), Expect = 0.005
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C C + S L H R HT E+P+ S
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.1
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K GL H + HT K S
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G++ + C C K FTQ +L H+R HTGE P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ ++ C+ C K F + +LT H RIHTG++P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ G+ + C C + F+ + + H R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 33.3 bits (77), Expect = 0.006
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C C + + + L +H R HT E+P+ S
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 3.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L +H + HT K S
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++PY C CGK F + LN H+R HTG P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 56.4 bits (137), Expect = 3e-11
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ + E+P CS CGK F R L EH RIHTG RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C C + F + H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 30.2 bits (69), Expect = 0.069
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + HL H R HT RP+ S
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++PY C CGK FTQ L H R HTGE P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C+ CGK F + LT H RIHTG++P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.005
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C C + F+ + + +H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 31.3 bits (72), Expect = 0.029
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H R HT E+P+ S
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F+ + +L TH+ HTG+ P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F +LT H IHTG++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + FS ++ + H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC C + S ++ L H HT ++P+ S
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 25.2 bits (56), Expect = 4.9
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K +S L H HT K S
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FTQ L H+ HTGE P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T ++P C+ CGK F + L H IHTG++P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG+ PY C C + F+ + + H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.2 bits (69), Expect = 0.068
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H HT E+P+ S
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C++C K FTQK L H++ HTGE P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C C K F + L +H + HTG++P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C+ CS+ F+ KA + H ++H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC+VC + + K HL H +THT E+P+ S
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C VCSK K+ L H K+HT K S
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++ Y C+ CGK F++ L H+R H+GE P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+ C CGK F R L +H R+H+G++P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE Y+C+ C + FS + H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 32.1 bits (74), Expect = 0.014
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K + C+ C + S L H R H+ E+P+ S
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+ PY C CGK F++K L +H+R H GE P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E P C CGK F R L H R H G++P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G +EC C + S K L H RTH E+P+ S
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + FS K + H R+H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 24.8 bits (55), Expect = 5.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K K L H ++H K S
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F + H+R HTG+ P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 55.7 bits (135), Expect = 7e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK F + T+H R+HTGQRP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F + H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 31.0 bits (71), Expect = 0.038
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + H R HT +RP+ S
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 24.5 bits (54), Expect = 7.9
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K G S H + HT + S
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG+RP+ C CGK F Q L H+R HTGE P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T ERP C+ CGK F + L +H RIHTG++P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + F A + H R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 31.7 bits (73), Expect = 0.022
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + +C C + HL H R HT E+P+ S
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++P+ CE CGK FTQ L++H+R HTGE P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C CGK F + L H R+HTG++P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.003
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+CE C ++ + +HL H R HT E+P+ S
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE P+ CE C +RF+ + + H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F+Q L H+R HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F + L H RIHTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + FS + + H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 31.7 bits (73), Expect = 0.024
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + S + L H R HT E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 7.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L H + HT K S
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 58.7 bits (143), Expect = 5e-12
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
G++PY CEICG F Q L +H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPY 234
+ E+P C CG FR L H+RIHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
GE PY CE C RF ++ H+R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 38.2 bits (90), Expect = 8e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ G K + CE+C + L+ H+R HT P
Sbjct: 5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.0 bits (66), Expect = 0.20
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYA 73
C +C R LK H++ HT S +
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 24.4 bits (54), Expect = 8.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 90 HTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKH 122
+ S E Y C C + L L++H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG +PY C CGK F+Q L H+R HTGE P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T +P C+ CGK F + L H R+HTG++P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TG PY C C + FS + + H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 31.4 bits (72), Expect = 0.033
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + S + L H R HT E+P+ S
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FTQ L H+R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F + L H RIHTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ + + +H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.7 bits (73), Expect = 0.024
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H R HT +P+ S
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L H + HT K S
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C++CGK F L H H+GE P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGK FR L +H +H+G+RP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKA-LVRHHVRSH 284
TGE PY C+ C + F + LV+HH H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVH 35
Score = 30.6 bits (70), Expect = 0.052
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C+VC + +HL H H+ ERP+ S
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++ Y C CGK F++ L+ H++ HTGE P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 9e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+ C+ CGK F R L++H +IHTG++P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE Y C C + FS + + H + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 30.6 bits (70), Expect = 0.051
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + S + L H + HT E+P+ S
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L H K HT K S
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C CGK F + +L H+ H+GE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C+ CGK FR +L H H+G++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F ++ + H +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + ++ L +H TH+ E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K ++S L IH +H+ K S
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 58.3 bits (142), Expect = 6e-12
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
G++PY C+ CGK F+QK +L H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 53.0 bits (128), Expect = 6e-10
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPY 234
+ E+P C CGK F + +L HIR+HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
GE PY C+ C + FS K + H+R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ G K + C+ C + S K L +H+R HT P
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 24.8 bits (55), Expect = 5.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYA 73
C+ C K K L +H++ HT S +
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 7e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FTQ L H+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F + L H IHTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 32.8 bits (76), Expect = 0.009
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ + + H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 31.3 bits (72), Expect = 0.035
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H HT E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 7e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FTQ L H+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F + L H IHTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ + + H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.038
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H HT E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 58.9 bits (143), Expect = 8e-12
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 190 KNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVC--EICGKGFTQ 245
+ + R +CS+ CGK + + L H R HTG++P+ C + C + F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 246 KQALNTHKRGH 256
L+ H+R H
Sbjct: 62 SDELSRHRRTH 72
Score = 54.3 bits (131), Expect = 4e-10
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 220 ALTEHIRIHTGQRPYVCEI--CGKGFTQKQALNTHKRGHTGEIPYHCEF--CSERFSTKA 275
+ + R ++C CGK + + L H R HTGE P+ C + C RF+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 276 LVRHHVRSH 284
+ H R+H
Sbjct: 64 ELSRHRRTH 72
Score = 48.5 bits (116), Expect = 5e-08
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIH 228
C + +HL+ H RTHT E+P CS+ C + F R D L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.0 bits (60), Expect = 1.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACSI--CLAEFHTLTEKDRHTLSH 94
C K S LK H ++HT K ++CS C F E RH +H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++P+ C CGK + Q+ L H+R HTGE P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGK + + LT+H R+HTG++P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + ++ + + H R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 32.1 bits (74), Expect = 0.016
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C C + + + HL H R HT E+P+ S
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 57.9 bits (141), Expect = 8e-12
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++PY C CGK F K L H+R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + E+P C+ CGK F L H R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE PY C C + F K+L+ H R+H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
+ G K +EC C + K+ L +H RTH
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 9e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F L+ H+R HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK FR L+ H RIHTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F + + H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 32.1 bits (74), Expect = 0.014
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + ++L H R HT E+P+ S
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K S L H + HT K S
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 57.9 bits (141), Expect = 9e-12
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
G++PY CE CG F Q L H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 52.9 bits (128), Expect = 5e-10
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPY 234
+ E+P C CG F + L H+ IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ G K ++CE C + HLR H+ HT P
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
GE PY CE C RF A +R HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.9 bits (58), Expect = 2.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYA 73
C C R + L+ H+ HT S +
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 25.6 bits (57), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 90 HTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKH 122
+ S E YKC C ++A+L+AH+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 9e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++P+ C+ CGK F Q L +H R HTGE P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ + E+P C CGK FR+ L H+RIHTG++P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE P+ C+ C + F + H+R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 32.1 bits (74), Expect = 0.017
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F+C+ C + HL H+R HT E+P+ S
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK F + L H+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C CGK FRR L H IHTG++P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.4 bits (75), Expect = 0.012
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F + + H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 31.3 bits (72), Expect = 0.028
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + +HL H HT E+P+ S
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G+R + C CGK F Q H+R HTGE P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ ER CS CGK F + +H RIHTG++P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE + C C + F + H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G + C C + ++ H R HT E+P+ S
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K S H + HT K S
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++P+ C CGK F+ L H+R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGK F L H RIHTG+ P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C C + FS + + H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 32.5 bits (75), Expect = 0.013
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K EC C + S + L +H R HT E P+ S
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 24.4 bits (54), Expect = 8.2
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K S L +H + HT S
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++PY C CGK FTQ L H+R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 52.5 bits (127), Expect = 8e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C+ CGK F + L H R+HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + F+ + + H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.0 bits (71), Expect = 0.035
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K ++C C + + +HL H R HT +P+ S
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 57.7 bits (140), Expect = 1e-11
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 196 HMRTHTNERPAVCSY--CGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ T E+P C++ CG F R D L+ H R H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 53.8 bits (130), Expect = 4e-10
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 224 HIRIHTGQRPYVC--EICGKGFTQKQALNTHKRGHTGEIPYHCE 265
TG++P+ C CG F++ L+ H+R H+G P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 251 THKRGHTGEIPYHCEF--CSERFSTKALVRHHVRSH 284
+ TGE P+ C + C RFS + H RSH
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 32.3 bits (74), Expect = 0.016
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 172 THLGIK-FEC--EVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K F C C + S + L H R+H+ +P+ S
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 26.1 bits (58), Expect = 2.3
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 49 CSKRCGSKSGLKIHMKSHTLSKRYACS 75
C R L H +SH+ K S
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++PY C+ CGK F+Q L H+R HTGE P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CGK F + L +H R+HTG++P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C+ C + FS + H R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 31.3 bits (72), Expect = 0.028
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
+ G K +EC+ C + S HL H R HT E+P+ S
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 7.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K + L H + HT K S
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 1e-11
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G++PY C CGK F+ L H HT E P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E+P CS CGK F LT+H HT ++P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K ++C C + S L H THT E+P+ S
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 32.1 bits (74), Expect = 0.013
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE PY C C + FS + H +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K L H +HT K S
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+ + + C CG+GFT K LN H+R HTGE P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ ++ + C CG+GF L +H RIHTG++P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ K +C C R + K+HL H R HT E+P+ S
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.010
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ + + C C F+ K+ + H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 25.6 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C + KS L H + HT K S
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G+RPY C CGK F + L H + H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + ERP C+ CGK F R L EH++ H ++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G + + C C + +HL H++ H E+ + S
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.9 bits (71), Expect = 0.041
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+GE PY C C + F + + H++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 27.9 bits (63), Expect = 0.44
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K G S L H+K H K S
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G+RP+ C CGKGF ++ L H R H+ E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ + ERP C+ CGKGF R L H+R+H+ ++
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 36.4 bits (85), Expect = 4e-04
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G + F+C C + ++HL H+R H+ E+ + S
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 31.4 bits (72), Expect = 0.026
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +GE P+ C C + F ++ + H+R H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 27.1 bits (61), Expect = 0.92
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
CN C K G +S L H++ H+ K S
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G++ + C C F+Q +L H+ H GE P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E+ C C F + +L H +H G++P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ +G K ++C C S + LRLH H E+P+ S
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE + C C FS + +R H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 27.9 bits (63), Expect = 0.56
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C S L++H H K S
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++P C CGK F K L H+R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C+ CGK F L H R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K +C C + K+ L +H RTH +++ + S
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P C C + F K+ + H R+H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 27.9 bits (63), Expect = 0.42
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K KS L +H ++H K S
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 3e-11
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
G PY C C K F+ K L H+R HT E P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ P CS C K F L H R+HT ++P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.0 bits (84), Expect = 6e-04
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G+ ++C C + S K L +H R HT E+P+ S
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 32.1 bits (74), Expect = 0.014
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ G PY C C + FS K + H R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 27.9 bits (63), Expect = 0.54
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K K L +H + HT K S
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G+ PY C CGK F +K L +H+R H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E P CS CGK F R D L H R H G+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
G +EC C + + K+ L H RTH E
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 30.9 bits (71), Expect = 0.032
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 253 KRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +GE PY C C + F+ K + H R+H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++PY C+ C K F Q LN HKR HTGE
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ + ++P C C K F + L +H R+HTG+R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 35.6 bits (83), Expect = 8e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K +EC+ C + HL H R HT ER + S
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 31.4 bits (72), Expect = 0.032
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ +G+ PY C+ C + F + H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 24.4 bits (54), Expect = 9.7
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C K L H + HT + S
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 56.4 bits (137), Expect = 4e-11
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRG-HTGEIPYHC 264
TG++PY C CGK F Q +L H R HTGE P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIR-IHTGQRPYVC 236
+ T ++P C CGK F + +L H R HTG++P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
+ TG+ PY C C + F + H R +H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG+ PY C CGK F++K L +H++ H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E P C CGK F R D L H + H+GQ
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
++ G +EC C + S K+ L H +TH+ +
Sbjct: 5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.1 bits (74), Expect = 0.016
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE PY C C + FS K + H ++H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++P+ C C K F+ K L H++ H E P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 50.2 bits (121), Expect = 5e-09
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E+P CS C K F L H + H ++P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 170 NTTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K F C C + S+K++L +H +TH E+P+ S
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 253 KRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +GE P+ C C + FS+K+ + H ++H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.0 bits (66), Expect = 0.18
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K SKS L +H ++H K S
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 57.3 bits (138), Expect = 6e-11
Identities = 18/75 (24%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 199 THTNERPAVCSYCGKGFRRGDALTEHI-RIHTGQRPYV--------CEICGKGFTQKQAL 249
+ C + F L H+ H G C GK F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 250 NTHKRGHTGEIPYHC 264
H R HTGE
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 47.7 bits (113), Expect = 2e-07
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 178 FECEVCHRKLSTKNHLRLHM-RTHTNERP--------AVCSYCGKGFRRGDALTEHIRIH 228
+ C R ST + L H+ H C GK F+ L HIR+H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 229 TGQRPYVC 236
TG++
Sbjct: 86 TGEKSGPS 93
Score = 41.5 bits (97), Expect = 2e-05
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 15/74 (20%)
Query: 151 HNAPPFECESCKKIFT------YHKNTTHLGIK---------FECEVCHRKLSTKNHLRL 195
+SC + F+ H H+G EC + K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 196 HMRTHTNERPAVCS 209
H+R HT E+ S
Sbjct: 81 HIRVHTGEKSGPSS 94
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 227 IHTGQRPYVCEICGKGFTQKQALNTH-KRGHTGEIPYHCEFCSER--------FSTKALV 277
I Q + C + F+ L TH H G + C F K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 278 RHHVRSH 284
+H+R H
Sbjct: 79 VNHIRVH 85
Score = 29.9 bits (67), Expect = 0.27
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C K +K L H++ HT K S
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 27.6 bits (61), Expect = 1.6
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 256 HTGEIPYHCEFCSERFSTKALVRHHVRSHH 285
++ + C FST + HV H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.7 bits (135), Expect = 6e-11
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
TG++P+ C+ CG F+ +L H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 52.6 bits (127), Expect = 8e-10
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T E+P C CG F +L +H+R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ TGE P+ C+ C FS + H+RSH
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K F+C+ C S L H+R+H P+ S
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 25.6 bits (57), Expect = 2.9
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C C L H++SH + S
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.4 bits (133), Expect = 2e-10
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 192 HLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNT 251
+ H +R CS CG F R L+ + +CE C K Q+ ALN
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 252 HKRGHTGEIPY 262
+ +G+
Sbjct: 58 DEGNESGKKTS 68
Score = 44.7 bits (105), Expect = 1e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 220 ALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRH 279
+ + +IH G R C CG F ++ L+ K CE C + +A +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNK 57
Query: 280 HVRSH 284
+
Sbjct: 58 DEGNE 62
Score = 33.1 bits (75), Expect = 0.013
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 155 PFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPA 206
+C C IF + CE C + + L + ++ +
Sbjct: 18 SQKCSKCGIIFIRRSTLSRRK-TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 32.3 bits (73), Expect = 0.023
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 54 GSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLA 113
GS K H + CS C F + C +C + + A
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 114 YLQAHMKKHRNEYTA 128
L + T+
Sbjct: 54 ALNKDEGNESGKKTS 68
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 2e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCE 265
+G++ + C+ CGK F AL H+R H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 50.7 bits (122), Expect = 5e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCE 237
+ + E+ C CGK F AL H R+H G++
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.8 bits (73), Expect = 0.018
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+GE + C+ C + F + +R H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 31.4 bits (72), Expect = 0.030
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVCS 209
++ G K C+ C + + LR+H R H E+ + S
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.6 bits (62), Expect = 0.75
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACS 75
C+ C K S L+IH + H K S
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 53.8 bits (130), Expect = 3e-10
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
G+ PY+C CGK FTQ+ +L H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 46.9 bits (112), Expect = 9e-08
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPY 234
+ E P +C CGK F + +L H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.5 bits (72), Expect = 0.024
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERP 205
+ G + C C + + + L +H R+ + P
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 31.5 bits (72), Expect = 0.024
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
GE PY C C + F+ + + H RS
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 24.2 bits (53), Expect = 9.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYA 73
C C K + L +H +S + S +
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.0 bits (128), Expect = 6e-10
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPY 262
+GQR Y C+ CGK F QK +L H+R HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPY 234
+ +R C CGK FR+ +LT H RIHTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 31.4 bits (72), Expect = 0.022
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 253 KRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +G+ Y C+ C + F K + H R H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 29.1 bits (66), Expect = 0.15
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERP 205
+EC+ C + K L LH R HT P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.2 bits (126), Expect = 9e-10
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 223 EHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
T + Y C CGK FT+ L H++ HT +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 50.3 bits (121), Expect = 5e-09
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ T+ + C+ CGK F R LT H +IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.2 bits (69), Expect = 0.060
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
T Y+C C + F+ + H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 26.4 bits (59), Expect = 1.8
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
+ K + C C + + HL H + HT +
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 51.6 bits (123), Expect = 2e-09
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+C CG ++ L +HIR HT RPY C C F K L H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 47.8 bits (113), Expect = 5e-08
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
Y+CE CG + L H R HT PYHC +C+ F TK + H++S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 46.2 bits (109), Expect = 2e-07
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
K+ CE C + + L+ H+RTHT+ RP C+YC F+ LT+H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 35.1 bits (80), Expect = 0.002
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVE 97
C C R S LK H+++HT + Y C+ C F T +H S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 32.0 bits (72), Expect = 0.021
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 71 RYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
+Y C C + +H +H Y C C+ K L HMK +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 29.7 bits (66), Expect = 0.16
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETH 146
Y C +C KK + L+ H++ H + +C C F K H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 27.0 bits (59), Expect = 1.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 156 FECESCKKIFTYHKN-----TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNER 204
+ CE C TH ++ + C C+ TK +L HM++ + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.1 bits (115), Expect = 3e-08
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHC 264
+G++PY C C + F+ L H++ HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 45.4 bits (108), Expect = 3e-07
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVC 236
+ E+P C+ C + F + L +H ++HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.1 bits (71), Expect = 0.035
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 253 KRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +GE PY C C E FS + H + H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 30.0 bits (68), Expect = 0.096
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 170 NTTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERPAVC 208
++ G K + C C S N L H + HT +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.1 bits (109), Expect = 2e-07
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 226 RIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCS 268
++ CEICGK F LN HK H+GE PY S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 198 RTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEIC 239
+ + C CGK FR L H H+G++PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.008
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYC 211
+ CE+C + HL H +H+ E+P
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.12
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 45 ACNVCSKRCGSKSGLKIHMKSHTLSKRYACSIC 77
AC +C K L H SH+ K Y+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.56
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 64 KSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQC 105
S K+ AC IC F + +RH LSH E Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 25.3 bits (55), Expect = 5.3
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 254 RGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
CE C + F + H SH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 46.1 bits (108), Expect = 1e-06
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 182 VCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGK 241
+ + +L ++ + VC C F +L +HIR VC +C K
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKK 108
Query: 242 GFTQKQALNTH 252
FT + H
Sbjct: 109 EFTSTDSALDH 119
Score = 44.9 bits (105), Expect = 3e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 6/111 (5%)
Query: 183 CHRKLSTKNHLRLHMRTHTNERPAVC----SYCGKGFRRGDALTEHIRIHTGQRPYVCEI 238
++ + R H T +R + + +VC +
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 239 CGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHHSSAR 289
C F+ +L H R C C + F++ HV H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 44.9 bits (105), Expect = 3e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 162 KKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDAL 221
+ + Y + +F C +C S+ L+ H+R E VC C K F D+
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSA 116
Query: 222 TEHIR 226
+H+
Sbjct: 117 LDHVC 121
Score = 33.0 bits (74), Expect = 0.043
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 22 KRGHEKTLPRAKKCREVEQDGSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEF 81
KR H+ T + + R + + + + + +S + + ++ C +CL F
Sbjct: 30 KRYHQLTPEQKRLIRAIVKT-----LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPF 84
Query: 82 HTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRN 124
+ +H E C C H+ K N
Sbjct: 85 SSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 29.1 bits (64), Expect = 0.80
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 90 HTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQ 149
L+ ++ C C L+ H++ + C +C++ F H +
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCK 122
Query: 150 KHN 152
KHN
Sbjct: 123 KHN 125
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.9 bits (105), Expect = 2e-06
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 168 HKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRI 227
+ ++C +C+ KLS+ H R N AVC YC F + EH
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-ES 63
Query: 228 HTGQRPYVCEICGKGFTQKQALNTHK 253
+ C C + F ++ H+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 40.3 bits (93), Expect = 7e-05
Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Query: 202 NERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIP 261
N+ C C H R+ + VC C F + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 262 YHCEFCSERFSTKALVRHHVRSHHS 286
C C F + + H H+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 36.0 bits (82), Expect = 0.002
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 3/98 (3%)
Query: 30 PRAKKCREVEQDGSLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDR 89
+ VE C +C+ + S H + C C F + K
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
Query: 90 HTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYT 127
H S + C +C K + H + N+
Sbjct: 61 HE-SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNN 97
Score = 35.3 bits (80), Expect = 0.005
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 218 GDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALV 277
G + + + Y C +C + +H+R C +CS RF + L
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELK 58
Query: 278 RHHVRSH 284
+ H
Sbjct: 59 QEHESKC 65
Score = 33.3 bits (75), Expect = 0.020
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 7/92 (7%)
Query: 117 AHMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTY-----HKNT 171
+ N+ C LC + +H NA C C F +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES 63
Query: 172 THLGIKFECEVCHRKLSTKNHLRLHMRTHTNE 203
K C C R + + H N+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 31.8 bits (71), Expect = 0.084
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 70 KRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAY 129
+ Y C +C A+ +L E+ H + C C Q H K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSH--ERLCRNAAVCPYCSLRFFSPELKQEHESKC-EYKKLT 71
Query: 130 CDLCQEGFFRKAKYETHNIQKHN 152
C C F H ++ HN
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHN 94
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 41.6 bits (98), Expect = 5e-06
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIH 228
R T +P C C + F R D L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 41.2 bits (97), Expect = 8e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGH 256
R TG +P+ C C + F++ L H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 172 THLGIK-FECEVCHRKLSTKNHLRLHMRTH 200
GIK F+C C R S +HL LH + H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.7 bits (75), Expect = 0.009
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 252 HKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
RG TG P+ C C FS + H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.0 bits (96), Expect = 9e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 224 HIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
G+ P+ C C + FTQ+ L H+R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 39.5 bits (92), Expect = 4e-05
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 196 HMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ E P CS C + F + + L +H R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 29.8 bits (67), Expect = 0.090
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 251 THKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ GE P+ C C F+ + + H R+H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.8 bits (67), Expect = 0.10
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 89 RHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNE 125
S E +KC++CD V + YL H + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 29.1 bits (65), Expect = 0.21
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 171 TTHLGIK-FECEVCHRKLSTKNHLRLHMRTHTNERP 205
++ G F+C C R + +N+L H RTH +
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 204 RPAVCSY--CGKGFRRGDALTEHIRIHTGQR 232
RP +C++ CGK F R D L H R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.8 bits (73), Expect = 0.015
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 232 RPYVC--EICGKGFTQKQALNTHKRGHTGE 259
RP++C CGK FT+ L HKR HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 26.8 bits (60), Expect = 0.91
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 178 FEC--EVCHRKLSTKNHLRLHMRTHTNER 204
F C C ++ + + L+ H RTHT E+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.6 bits (94), Expect = 6e-04
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 236 CEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHHSSARLGL 292
E ++ A + Y C CS + + HV SH + L
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Score = 39.8 bits (92), Expect = 0.001
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 220 ALTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGH 256
A + Y C +C L+ H H
Sbjct: 167 ARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.5 bits (91), Expect = 0.001
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 43 SLACNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEG 98
+ S + + Y C +C A + + D H SH + G
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 37.9 bits (87), Expect = 0.004
Identities = 8/51 (15%), Positives = 12/51 (23%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIH 228
E +S T ++ C C L H+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.8 bits (84), Expect = 0.010
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 160 SCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTH 200
S T G ++C VC L + L H+ +H
Sbjct: 163 SKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+P VC +C + F AL H+RIHTG++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.076
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+PYVC C + F AL H R HTGE
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
R VC C + F R + L H R HT ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.4 bits (77), Expect = 0.004
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
R +VCE+C + F +++ L H R HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 31.5 bits (72), Expect = 0.018
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNER 204
F CEVC R + + HL+ H R+HTNE+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 33.2 bits (75), Expect = 0.006
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTGE 259
+P C +CGK FTQ +L H R HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 30.9 bits (69), Expect = 0.036
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+P C CGK F + +L H+R HTG++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.4 bits (78), Expect = 0.008
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 191 NHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRI-HTGQR---PYVCEICGKGFTQK 246
+H + + E C YC + T H+ H YVC C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 247 QALNTH-KRGHTGEIPY 262
AL+ H + H GE +
Sbjct: 64 DALSEHNLKYHPGEENF 80
Score = 31.7 bits (71), Expect = 0.075
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 165 FTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRT-HTNERPA---VCSYCGKGFRRGDA 220
+++ + +EC+ C + N H+ + H N VC C +R DA
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 221 LTEHI-RIHTGQRPYVCEI 238
L+EH + H G+ + +
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 29.4 bits (65), Expect = 0.51
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 89 RHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKHRNEYTA----YCDLCQEGFFRKAKYE 144
+ + VEG Y+C C L H+ C C R
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 145 THNIQKH 151
HN++ H
Sbjct: 68 EHNLKYH 74
Score = 28.2 bits (62), Expect = 1.1
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 4/73 (5%)
Query: 219 DALTEHIRIHTGQRPYVCEICGKGFTQKQALNTH-KRGHTG---EIPYHCEFCSERFSTK 274
+ + + Y C+ C H H Y C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 275 ALVRHHVRSHHSS 287
+ H +H
Sbjct: 64 DALSEHNLKYHPG 76
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.015
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 228 HTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
+G+RP+VC IC FT K H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 30.9 bits (69), Expect = 0.032
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
G +G+ P+ C C F+TKA H++ H
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
+ +RP VC C F H+++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.2 bits (72), Expect = 0.015
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSHHSS 287
G +GE PY C C RF K + +HVRSH S
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 31.8 bits (71), Expect = 0.021
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 200 HTNERPAVCSYCGKGFRRGDALTEHIRIHTG 230
+ E+P C CG F+R D ++ H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.4 bits (70), Expect = 0.032
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 228 HTGQRPYVCEICGKGFTQKQALNTHKRGHTGEI 260
+G++PY C +CG F +K ++ H R H G +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 24.9 bits (53), Expect = 7.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTH 200
+ C VC + K+ + H+R+H
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSH 33
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.9 bits (69), Expect = 0.032
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGHTG 258
RPY C +CGK F+ K + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIHTG 230
RP CS CGK F + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 34.2 bits (78), Expect = 0.047
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 38/178 (21%)
Query: 110 KKLAYLQAHM-KKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYH 168
K + ++ H + +C C + I F+C+ C F H
Sbjct: 30 KNVHEVKNHKFTARFFKQPTFCSHCTD-----------FIWGFGKQGFQCQVCS--FVVH 76
Query: 169 KNTTHLGIKFECEVCHRKLSTKNHLRLHM-RTHTNERPAVCSYCGKGFRRGDALTEHIRI 227
K H + F C + ++ + H + HT P C +CG +
Sbjct: 77 KRC-HEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGS------------LL 123
Query: 228 HTGQRP-YVCEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSH 284
+ C+ C +N HKR +P C + ++ H+
Sbjct: 124 YGLIHQGMKCDTCM--------MNVHKRCVM-NVPSLCGTDHTERRGRIYIQAHIDRE 172
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.4 bits (69), Expect = 0.054
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 229 TGQRPYVCEI--CGKGFTQKQALNTHKRGHTGE 259
++ ++C I CGK + + L H R HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 30.0 bits (68), Expect = 0.083
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQR 232
++ +C CGK + + L H+R HTG+R
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.8 bits (57), Expect = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 183 CHRKLSTKNHLRLHMRTHTNER 204
C + +HLR H+R HT ER
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 30.6 bits (68), Expect = 0.058
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 205 PAVCSYCGKGFRRGDALTEHIRIHTGQ 231
+ C CGK FR L EH +H G+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 25.6 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 230 GQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ C+ CGK F L H+ H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 30.0 bits (67), Expect = 0.17
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 193 LRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICGKGFTQKQALNTH 252
H T R AVC +C L EH + G R +C CG+ K L TH
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSILK-LKEHED-YCGARTELCGNCGRNVLVKD-LKTH 61
Query: 253 KRGHTGE 259
E
Sbjct: 62 PEVCGRE 68
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.21
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGH 256
R Y C C + F QAL H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 27.8 bits (62), Expect = 0.42
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNER 204
+ C C R+ + L HM H +R
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.5 bits (56), Expect = 3.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQR 232
CS+C + FR AL H+ +H R
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDR 33
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (64), Expect = 0.23
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 201 TNERPAVCSYCGKGFRRGDALTEHIRIHTGQR 232
+ E+ C CG+ F + +L EH +H GQ+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.3 bits (57), Expect = 2.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ ++ + C CG+ F Q +L H+ H G+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.29
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 178 FECEVCHRKLSTKNHLRLHMRTHTNER 204
F CE C++ K+ L+ H+R HTNE+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 0.80
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 208 CSYCGKGFRRGDALTEHIRIHTGQR 232
C YC K F+ +L H+RIHT ++
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.8 bits (53), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 234 YVCEICGKGFTQKQALNTHKRGHTGE 259
+ CE C K F K +L H R HT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 28.3 bits (63), Expect = 0.30
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNER 204
KF C C ++ +HL LH+ H N++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.4 bits (58), Expect = 1.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQR 232
C C K F R D LT HI +H ++
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.3 bits (63), Expect = 0.41
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 177 KFECEV--CHRKLSTKNHLRLHMRTHTNER 204
FEC C + + ++R H++TH +R
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.1 bits (60), Expect = 1.0
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHTGQR 232
++ C + C K F+R + HI+ H R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.4 bits (53), Expect = 8.0
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 232 RPYVCEI--CGKGFTQKQALNTHKRGHTGE 259
+ + C C K F ++ + +H + H +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.51
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 232 RPYVCEICGKGFTQKQALNTHKRGH 256
+PYVCE CGK F Q L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 23.9 bits (51), Expect = 9.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 204 RPAVCSYCGKGFRRGDALTEHIRIH 228
+P VC CGK F + L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.57
Identities = 35/287 (12%), Positives = 75/287 (26%), Gaps = 104/287 (36%)
Query: 4 YKKPSLHQVSFRFYASRKKRGHEK----TLPRAKKCREVEQDGSLACNVCSKRCGSKSGL 59
++PS+ + R ++ + R + ++ Q +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--------ALLELRPAKNV 153
Query: 60 KIH-M----KSHTLSKRYACS----ICLAEFH----TLTEKDRH--------TLSHVVEG 98
I + K+ ++ C C +F L + L + ++
Sbjct: 154 LIDGVLGSGKT-WVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 99 EYKCNQCDH----------VAKKLAYLQAHMKKHRNEYTAYC-----DLCQ----EGF-- 137
+ ++ DH + +L L K + N C ++ F
Sbjct: 212 NW-TSRSDHSSNIKLRIHSIQAELRRLLKS-KPYEN-----CLLVLLNVQNAKAWNAFNL 264
Query: 138 ---------------FRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLGIKFEC-- 180
F A TH H++ + K + +L + +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLP 319
Query: 181 -EVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIR 226
EV T+ P S + R G A ++ +
Sbjct: 320 REVL--------------TTN----PRRLSIIAESIRDGLATWDNWK 348
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.65
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 2/64 (3%)
Query: 226 RIHTGQRPYV--CEICGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRS 283
I G+ V E K H+ GE E + +R +
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Query: 284 HHSS 287
Sbjct: 231 SVLR 234
Score = 30.2 bits (67), Expect = 0.81
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 221 LTEHIRIHTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
T H + G++ E + + L
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 28.2 bits (62), Expect = 2.6
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 180 CEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
E ++L + + +H E+ + + L I +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 27.9 bits (61), Expect = 4.5
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 80 EFHTLTEKDRHTLSHVVEGEYKCNQCDHVAKKLAYLQAHMKKH 122
H+++++ H E + + + V L+ +
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 4.9
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 166 TYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNER 204
T H+N + + E + L LR + +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 26.7 bits (58), Expect = 9.0
Identities = 9/52 (17%), Positives = 11/52 (21%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVE 97
KR S S IH KR + V+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 30.4 bits (69), Expect = 0.77
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 103 NQCDHVA--KKLAYLQAHMKKHRNEYTAYCDL 132
NQ H +A L+AHM KH +
Sbjct: 294 NQLAHAQFFGDVAGLKAHMLKHAASLAPKFER 325
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.8 bits (63), Expect = 0.77
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 234 YVCEICGKGFTQKQALNTHK---RGHTGEIPYHCEFCSERFSTKALVRHHVRSHHSS 287
VC C T+K + K + C+ C ++F +KA + +H + HS+
Sbjct: 25 AVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Score = 26.1 bits (56), Expect = 6.7
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 177 KFECEVCHR-KLSTKNHLRLHMRT-HTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRP 233
+ C C+ T L+ HM + C +C K F+ L H +P
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.78
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 18 ASRKKRGHEKTLPRAKKCREVEQDGSLACNVCSKRCGSKSGLKIHMKS-HTL 68
A+ K + P++ K + S CNVC+ R + S L H++S H
Sbjct: 91 ANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 0.78
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 177 KFECEVCHRKLSTKNHLRLHMRTHTNERP 205
KF C C ++ +HL H+ H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 26.0 bits (57), Expect = 1.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRP 233
C C K F R D L++HI +H
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.95
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 229 TGQRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ +PY C C K LN H R HTGE
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 25.9 bits (56), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNE 125
YKC QC + + A L H++KH E
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGE 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKRGHTGE 259
+ ++C++CGK F K L +HK HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.4
Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 67/167 (40%)
Query: 187 LS----TKNHLRLHMRTHTNER-PAVCSYCGKGFRRGDALTEHIRI--HTGQRPYVCEIC 239
LS T+ ++ ++ TN PA + + I G + V +
Sbjct: 339 LSISNLTQEQVQDYVN-KTNSHLPA---------------GKQVEISLVNGAKNLV--VS 380
Query: 240 G-----KGFT---QKQA----LNTHKRGHTGE------------IPYHCEF---CSERFS 272
G G +K L+ + + P+H S+ +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 273 TKALVRHHVRSHHSSARL-------GLNL------LDHEL-SMITSK 305
K LV+++V + ++ G +L + + I
Sbjct: 441 -KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 29.3 bits (63), Expect = 1.8
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 2/140 (1%)
Query: 118 HMKKHRNEYTAYCDLCQEGFFRKAKYETHNIQKHNAPPFECESCKKIFTYHKNTTHLG-- 175
++ + E C C P + + K +H
Sbjct: 126 NVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHL 185
Query: 176 IKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYV 235
++C CH KL ++ C C G + ++ + H G +P
Sbjct: 186 GMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK 245
Query: 236 CEICGKGFTQKQALNTHKRG 255
+ H
Sbjct: 246 LTYKTSVGEAYFDHDIHLSM 265
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 1.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 100 YKCNQCDHVAKKLAYLQAHMKKHRNE 125
+KC+ C++ + + L+AHM +H E
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 24.8 bits (53), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 46 CNVCSKRCGSKSGLKIHMKSHTLSK 70
C++C SKS LK HM H+ K
Sbjct: 12 CSLCEYATRSKSNLKAHMNRHSTEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.1 bits (57), Expect = 1.9
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 203 ERPAVCSY--CGKGFRRGDALTEHIRIHT 229
+RP C + C K F R L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 24.6 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 232 RPYVCEI--CGKGFTQKQALNTHKRGHT 257
RPY C+ C K F + L HK+ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 199 THTNERPAVCSYCGKGFRRGDALTEHIRIHT 229
+ E+ C+ C K F LT+H RIHT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 4.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 228 HTGQRPYVCEICGKGFTQKQALNTHKRGHT 257
++ + C C K F+ + L H+R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 261 PYHCEFCSERFSTKALVRHHVRSHHSS 287
Y C C+ F+ + L+ H + HS
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 2.7
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 7/34 (20%)
Query: 207 VCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
C C + G VC +CG
Sbjct: 23 TCPECKV--YPPKIVERF---SEGD--VVCALCG 49
Score = 27.7 bits (61), Expect = 3.4
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 7/45 (15%)
Query: 64 KSHTLSKRYACSICLAEFHTLTEKDRHTLSHVVEGEYKCNQCDHV 108
+ L+ C C + E+ G+ C C V
Sbjct: 14 RGPNLNIVLTCPECKVYPPKIVERFSE-------GDVVCALCGLV 51
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 28.2 bits (63), Expect = 3.5
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 103 NQCDHVA--KKLAYLQAHMKKHRNEYTAYCDL 132
NQ H ++A M+KH +
Sbjct: 296 NQLAHARYFGDAEGVRAVMRKHAASLAPKFNK 327
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 25.0 bits (54), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 234 YVC--EICGKGFTQKQALNTHKRGHTG 258
YVC E CG+ F ++ LN HK+ HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.5 bits (55), Expect = 4.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 231 QRPYVCEICGKGFTQKQALNTHKR 254
+PY C+ICGK + + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
Score = 24.7 bits (53), Expect = 8.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSHHSSARLG 291
G + PY C+ C +R+ + + +H H + G
Sbjct: 1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG 37
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 27.7 bits (62), Expect = 5.3
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 103 NQCDHV---AKKLAYLQAHMKKHRNEYTAYCDL 132
Q HV + L+ M+ H
Sbjct: 289 EQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRA 321
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.8 bits (53), Expect = 5.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 255 GHTGEIPYHCEFCSERFSTKALVRHHVRSHHSSAR 289
G +G Y C C ++F + +R H+R H +A+
Sbjct: 1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 26.8 bits (58), Expect = 6.3
Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 6/117 (5%)
Query: 98 GEYKCNQCDHVAKKLAYLQAHMKKHRNEYTAYCDLCQEG---FFRKAKYETHNIQKHNAP 154
G YKCN+C + C C G F + + A
Sbjct: 26 GMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK 85
Query: 155 PFECESCKKIFTYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYC 211
S + + H F+C CH K+ E+ C C
Sbjct: 86 LTYKTSVGEAYFDHDIHLS---MFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVC 139
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 27.2 bits (61), Expect = 6.7
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 195 LHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQRPYVCEICG 240
+ + H N AVC C K + + + Q P C CG
Sbjct: 146 ISL--HGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CG 188
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.1 bits (56), Expect = 8.6
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 180 CEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHIRIHTGQ-----RPY 234
C+VC L +++ H ++ + + R
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 235 VCEICGKGFTQKQALNTHKRGH 256
C +C F+ +H G
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGK 116
Score = 26.1 bits (56), Expect = 9.0
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 43 SLACNVCSKRCGSKSGLKIHMKSHT----LSKRYACSICLAEFHTLTEKDRHTLSHVVEG 98
C VCS S+S H +S + + A + K E
Sbjct: 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGED 91
Query: 99 EYK-CNQCDHVAKKLAYLQAHM--KKHR 123
K C C+ ++H K H
Sbjct: 92 RSKCCPVCNMTFSSPVVAESHYIGKTHI 119
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.3 bits (52), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 208 CSYCGKGFRRGDALTEHIR 226
C C K F R DAL++HI+
Sbjct: 5 CPACPKRFMRSDALSKHIK 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.431
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,550,732
Number of extensions: 255129
Number of successful extensions: 2830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2377
Number of HSP's successfully gapped: 1099
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.3 bits)