RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4574
(343 letters)
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.1 bits (97), Expect = 3e-06
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 277 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 308
H+G KP+ C CG+++S ++ L H HTGE
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 31.4 bits (72), Expect = 0.009
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 305 HTGETSHTCHLCPQKFRQRSSYTLHYKTH 333
H+GE + C C + F + S H + H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 31.4 bits (72), Expect = 0.009
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 250 HQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
H G+KP C CGK L H HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 26.0 bits (58), Expect = 0.71
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 227 FICDVCGKSYVRKGALTEHHQREHQG 252
+ C CGK++ R L + HQR H G
Sbjct: 8 YGCVECGKAFSRSSILVQ-HQRVHTG 32
Score = 23.3 bits (51), Expect = 7.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 181 VHKIGKNYQCYYCRKTYCHKPNLTNH 206
+H K Y C C K + L H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQH 26
Score = 23.0 bits (50), Expect = 9.3
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 124 HMHEKLYQCDFCGSQQRTKCRFYYHLR 150
H EK Y C CG H R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 41.3 bits (97), Expect = 3e-06
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 271 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 308
+ + C+ CG+S+S ++ L H HTGE
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 31.3 bits (71), Expect = 0.011
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 301 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 333
+ C C + F S + H +TH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 31.3 bits (71), Expect = 0.012
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 246 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
+ + + ++ C CGK L+ H THTG
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.7 bits (88), Expect = 5e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 276 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 308
THTG KP+ C C +++ L +H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 32.7 bits (75), Expect = 0.003
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 305 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH 334
HTGE + C C + FRQ+ +H+K +H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 28.5 bits (64), Expect = 0.11
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 248 REHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
R H G+KP C+ C K K+ L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 24.6 bits (54), Expect = 2.6
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 225 REFICDVCGKSYVRKGALTEHHQREHQGKK 254
+ + C C K++ +K L H + +
Sbjct: 7 KPYACSHCDKTFRQKQLLD-MHFKRYHDPN 35
Score = 23.1 bits (50), Expect = 8.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 181 VHKIGKNYQCYYCRKTYCHKPNLTNH 206
H K Y C +C KT+ K L H
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMH 27
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.7 bits (87), Expect = 8e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 333
K + C+ CG+S++ + HMS H G + C +C +KF+ + H K H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 34.7 bits (79), Expect = 0.001
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 232 CGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTH 277
CGKS+ K H + C +CGK K L HM H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 33.5 bits (76), Expect = 0.003
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 260 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 305
CGK K HM+ H GL+P+ C +CG+ + +L HM H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 27.7 bits (61), Expect = 0.28
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 165 CSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNH 206
C + FT K H+++H + Y C C K + K +L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 23.9 bits (51), Expect = 6.0
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 186 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 245
K Y C C K++ HK H + R + C VCGK + K L H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRH-----------MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 277 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS 310
+G +P C IC +++T A H+ HT S
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
Score = 26.6 bits (59), Expect = 0.49
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 250 HQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
GK+P VC IC K + A H+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.3 bits (58), Expect = 0.58
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 305 HTGETSHTCHLCPQKFRQRSSYTLHYKTH 333
+G+ C +C F +++ H K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 276 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 308
TH+G KP+ C IC ++ + +K+H+ E
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 31.1 bits (71), Expect = 0.010
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 305 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH 334
H+GE + C++C +F Q + +H H
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 28.8 bits (65), Expect = 0.071
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 227 FICDVCGKSYVRKGALTEHHQREH 250
+ C +C + + G + H ++H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 27.3 bits (61), Expect = 0.28
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 186 KNYQCYYCRKTYCHKPNLTNHIQNVH 211
K Y+CY C + + HI H
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKH 32
Score = 26.1 bits (58), Expect = 0.74
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 248 REHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
R H G+KP C IC ++ H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33
Score = 23.0 bits (50), Expect = 9.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 124 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 153
H EK Y+C C ++ H+ KH
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 23.0 bits (50), Expect = 9.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 63 KLYECSLCNESFENKKVLFRHLRGKHG 89
K YEC +C+ F + H+ KH
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHT 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 35.7 bits (83), Expect = 2e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 281 KPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTCHL 315
KP+ C+ CG+ +S +L H+ HT E H C +
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 34.6 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 227 FICDVCGKSYVRKGALTEHHQREHQGKKP 255
+IC CGK + R L H ++ H ++P
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERP 34
Score = 33.8 bits (78), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 252 GKKPVCTICGKMLIDKRSLANHM-NTHTGLKPHCCEI 287
GK +C CGK L H+ HT +PH C++
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 28.8 bits (65), Expect = 0.086
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 184 IGKNYQCYYCRKTYCHKPNLTNHIQNVH 211
+GK Y C C K + +L HI+ VH
Sbjct: 2 VGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 27.7 bits (62), Expect = 0.22
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 103 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCD 133
C C + F + HI H E+ ++C
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 25.3 bits (56), Expect = 1.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 62 GKLYECSLCNESFENKKVLFRHLRGKH 88
GK Y C C + F L H++ H
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 25.0 bits (55), Expect = 2.0
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 306 TGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP 339
+ + C C + F + H K H P
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 34
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 35.5 bits (82), Expect = 4e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 273 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG 307
TG+KP C C RS+S + +L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 31.2 bits (71), Expect = 0.011
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 301 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 333
TG C C + F + LH K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (64), Expect = 0.094
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 246 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 279
R G KP C C + LA H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 34.5 bits (80), Expect = 6e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGE 308
+ CE+C R+++ +LK H HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 28.0 bits (63), Expect = 0.13
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 225 REFICDVCGKSYVRKGALTEHHQREHQGKK 254
R F+C+VC +++ R+ L H R H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKR-HYRSHTNEK 29
Score = 26.8 bits (60), Expect = 0.30
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 257 CTICGKMLIDKRSLANHMNTHTGLK 281
C +C + + L H +HT K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 23.0 bits (50), Expect = 8.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 311 HTCHLCPQKFRQRSSYTLHYKTH 333
C +C + F ++ HY++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (75), Expect = 0.002
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGE 308
K C C + + + +L H+ H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
Score = 26.9 bits (60), Expect = 0.30
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 257 CTICGKMLIDKRSLANHMNTHTGLK 281
C C K + L+ H+ TH K
Sbjct: 5 CPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 26.2 bits (58), Expect = 0.57
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 227 FICDVCGKSYVRKGALTEHHQREHQGKK 254
F C C K ++R L++ H + HQ KK
Sbjct: 3 FACPECPKRFMRSDHLSK-HIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.8 bits (73), Expect = 0.005
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTG 307
KP C IC R++S + +L H+ HTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 27.2 bits (61), Expect = 0.23
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 257 CTICGKMLIDKRSLANHMNTHTG 279
C IC + L H+ THTG
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTG 28
Score = 25.6 bits (57), Expect = 0.82
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 227 FICDVCGKSYVRKGALTEHHQREHQG 252
F C +C +++ R LT H R H G
Sbjct: 4 FQCRICMRNFSRSDHLTT-HIRTHTG 28
Score = 23.7 bits (52), Expect = 4.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 308 ETSHTCHLCPQKFRQRSSYTLHYKTH 333
+ C +C + F + T H +TH
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 31.8 bits (72), Expect = 0.008
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 267 KRSLANHMNTHTGLKPHCCEIC--GRSYSTAAYLKVHMSCHTGE 308
R + K C +++ ++ H+ H +
Sbjct: 3 PRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 30.8 bits (70), Expect = 0.012
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 281 KPHCC--EICGRSYSTAAYLKVHMSCHTGE 308
KPH C E C +SYS LK H+ HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 23.4 bits (51), Expect = 6.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 260 CGKMLIDKRSLANHMNTHTG 279
C K +L H+ +HTG
Sbjct: 10 CRKSYSRLENLKTHLRSHTG 29
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.5 bits (69), Expect = 0.018
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 257 CTICGKMLIDKRSLANHMNTHTGLKPHCCE 286
CGK K+ L HM H+ + + CE
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 28.1 bits (63), Expect = 0.13
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 285 CEICGRSYSTAAYLKVHMSCHTGETSHTC 313
CG+S++ +LK HM H+ + C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 25.1 bits (55), Expect = 1.5
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 229 CDVCGKSYVRKGALTEHHQREHQGKKP 255
CGKS+ K L H + H +
Sbjct: 6 EPACGKSFNFKKHLK-EHMKLHSDTRD 31
Score = 25.1 bits (55), Expect = 1.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 100 KCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDF 134
C C ++F+ K ++EH+ H + Y C+F
Sbjct: 3 SCPEPACGKSFNFKKHLKEHM-KLHSDTRDYICEF 36
Score = 23.1 bits (50), Expect = 9.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 161 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY 192
C + F K+ L+ H+ +H ++Y C +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.7 bits (66), Expect = 0.036
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 282 PHCCEICGRSYSTAAYLKVHMSCHTG 307
PH CE+CG+ +S LK HM CHTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 29.2 bits (66), Expect = 0.042
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 281 KPHCC--EICGRSYSTAAYLKVHMSCHTGE 308
+P C CG+ ++ + L+ H HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 24.2 bits (53), Expect = 3.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 225 REFICDV--CGKSYVRKGALTEHHQREHQGKK 254
R F+C CGK + R L H+R H G+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQR-HKRTHTGEK 31
Score = 23.8 bits (52), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 260 CGKMLIDKRSLANHMNTHTGLK 281
CGK L H THTG K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.1 bits (63), Expect = 0.12
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 281 KPHCCEI--CGRSYSTAAYLKVHMSCHTGE 308
KP C CG+ +S L+ H+ HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 27.7 bits (62), Expect = 0.16
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 281 KPHCC--EICGRSYSTAAYLKVHMSCHTGET 309
+P+ C C +++ L H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 27.3 bits (61), Expect = 0.20
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 281 KPHCC--EICGRSYSTAAYLKVHMSCHTG 307
+P+ C E C R +S +A L H+ HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.5 bits (59), Expect = 0.37
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 281 KPHCCEI--CGRSYSTAAYLKVHMSCHT 306
+P+ C C + ++ + LK H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.0 bits (58), Expect = 0.61
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHT 306
KP+ C CG+++S + L H HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 23.3 bits (51), Expect = 5.9
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 227 FICDVCGKSYVRKGALTEHHQREH 250
+ C CGK++ + L HQR H
Sbjct: 3 YKCLECGKAFSQNSGLIN-HQRIH 25
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 29.3 bits (64), Expect = 0.65
Identities = 15/157 (9%), Positives = 38/157 (24%), Gaps = 6/157 (3%)
Query: 77 KKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCG 136
KK++F ++ + + K +Y+ +
Sbjct: 47 KKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYI------QRLNNIYRQNLSK 100
Query: 137 SQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKT 196
+ L + + +E+L + +G
Sbjct: 101 DKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTE 160
Query: 197 YCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCG 233
L N ++ + +RT++ + D C
Sbjct: 161 NLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCM 197
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 29.3 bits (65), Expect = 0.68
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 14 NTVYRIKSKDLLASFSSDVW-----DEERCRSCGLLSGSITQTYIHYLECKNRGKLYEC 67
V+ + + ++ W + +C G + YI L+ + LY C
Sbjct: 45 EAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYIRVLQPLSATSLYVC 103
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.8 bits (57), Expect = 0.97
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGE 308
+ + C C R + +A L HM+ H +
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRD 31
Score = 23.1 bits (50), Expect = 7.4
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 253 KKPVCTICGKMLIDKRSLANHMNTH 277
+ C+ C + ++L HMN H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.4 bits (55), Expect = 1.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 283 HCCEICGRSYSTAAYLKVHMSCHTGE 308
H C CG+++ ++ LK H HTGE
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVHTGE 28
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 27.5 bits (61), Expect = 1.3
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 101 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFY 146
C +C+R F S + H H Q + + FY
Sbjct: 16 TPCLFCDRLFASAEETFSHCKLEH------QFNIDSMVHKHGLEFY 55
Score = 27.1 bits (60), Expect = 1.6
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 67 CSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKC 101
C C+ F + + F H + +H I HK
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGL 52
>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 222 ILKREFICDVCGKSYVRKGALTEHHQREHQG 252
+L ++C C R AL+EH+ + H G
Sbjct: 2 VLNSSYVCVECNFLTKRYDALSEHNLKYHPG 32
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 1.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 227 FICDVCGKSYVRKGALTEHHQREHQG 252
+ C +C +++ R+ L H Q+ H G
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHSG 27
Score = 23.2 bits (50), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 65 YECSLCNESFENKKVLFRHLRGKHG 89
Y C LCN +F + +L RH + H
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHS 26
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.7 bits (56), Expect = 1.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 154 LSKPANLSCEFCSRIFTKKELLRSHLAVH 182
L + L C C ++FT LR H A H
Sbjct: 1 LREAGILPCGLCGKVFTDANRLRQHEAQH 29
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 257 CTICGKMLIDKRSLANHMNTH 277
C +CGK+ D L H H
Sbjct: 9 CGLCGKVFTDANRLRQHEAQH 29
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.6 bits (53), Expect = 2.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGE 308
K CEICG+ + +L H H+GE
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGE 31
Score = 23.5 bits (50), Expect = 7.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 253 KKPVCTICGKMLIDKRSLANHMNTHTGLKPH 283
K+ C ICGK+ D L H +H+G KP+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.6 bits (53), Expect = 2.1
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 308 ETSHTCHLCPQKFRQRSSYTLHYKTHHPGV 337
E ++C +C +F+++ + H ++H V
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 30
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 25.9 bits (57), Expect = 2.3
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 170 TKKELLRSHLAVHKIGKNYQCYYCRKTY---CHKPNLTNHIQNVHLKSELE 217
K S L +K + QC C +T+ + H + H K+++
Sbjct: 28 AKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVV 78
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 25.0 bits (55), Expect = 2.6
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 85 RGKHGMKIKLSRHKTKCVCHYCNRTFD 111
++ + C YC + F
Sbjct: 20 PVSSSFAVRKRANDIALKCKYCEKEFS 46
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 2.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 65 YECSLCNESFENKKVLFRHLRGK 87
+ C C F + L H R K
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSK 38
Score = 25.0 bits (55), Expect = 3.7
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 257 CTICGKMLIDKRSLANHMNTHTGLKPH 283
C C + ID +L H + K H
Sbjct: 18 CLACARYFIDSTNLKTHFRS----KDH 40
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.0 bits (52), Expect = 3.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCH 305
KP C+ICGR ++ + K H H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d2fn0a1 d.161.1.1 (A:2-434) Salicylate synthetase Irp9 {Yersinia
enterocolitica [TaxId: 630]}
Length = 433
Score = 27.1 bits (59), Expect = 3.3
Identities = 15/186 (8%), Positives = 37/186 (19%), Gaps = 17/186 (9%)
Query: 114 AKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCE-------FCS 166
A+ I + + + + R + + + + F
Sbjct: 179 ARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSP 238
Query: 167 RIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKRE 226
+ + ++ L + + + +
Sbjct: 239 ELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLE-----HILSVKEAIA 293
Query: 227 FICDVCGKSYVRKGALTEHHQRE--HQGKKPVCTICGKMLIDKRSLANHMN--THTGL-K 281
+ VC V L QR V + + T +G+ K
Sbjct: 294 ELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPK 353
Query: 282 PHCCEI 287
Sbjct: 354 NAALNA 359
>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 495
Score = 27.0 bits (59), Expect = 3.6
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 14 NTVYRIKSKDLLASFSSDVW-----DEERCRSCGLLSGSITQTYIHYLECKNRGKLYEC 67
+ ++ + + F VW + C+ G +I LE N+ LY C
Sbjct: 50 DHIFSF-NLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLEAYNQTHLYAC 107
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.9 bits (51), Expect = 4.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 227 FICDVCGKSYVRKGALTEH 245
F+C CGK++ R+ + H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.5 bits (50), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 285 CEICGRSYSTAAYLKVHMSCHTGE 308
C C + + + YLKVH HTGE
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGE 26
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346,
JAZ) {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 55
Score = 24.1 bits (52), Expect = 6.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 67 CSLCNESFENKKVLFRHLRGK-HGMKIKL 94
C +CN +F + V H GK H ++L
Sbjct: 24 CPVCNMTFSSPVVAESHYIGKTHIKNLRL 52
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 56
Score = 23.9 bits (52), Expect = 6.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 94 LSRHKTKCVCHYCNRTFDSKAKIQEHII 121
L+ K C YC D + +I I+
Sbjct: 29 LTEKPLKMRCEYCETIID-ENEIMSQIL 55
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.2 bits (49), Expect = 6.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 285 CEICGRSYSTAAYLKVHMSCHTGE 308
C +C ++ L++HM HTGE
Sbjct: 7 CSVCQETFRRRMELRLHMVSHTGE 30
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 23.1 bits (49), Expect = 7.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 188 YQCYYCRKTYCHKPNLTNHIQNVH 211
Y C +C K + K N+T H++ +H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.0 bits (54), Expect = 7.2
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 63 KLYECSLCNESFENKKVL-FRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHII 121
K+ EC +C E + H+ K M L++ K C C +K +QE
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQESTR 78
Query: 122 SSHMHEKLYQCDFCGSQQRTKCRF 145
S + E+L + C Q T +
Sbjct: 79 FSQLVEELLKI-ICAFQLDTGLEY 101
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 26.3 bits (57), Expect = 7.9
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 100 KCVCHYCNRTF-DSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPA 158
+CVC +C + D ++ ++ +K + + + + C D +
Sbjct: 103 ECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVS 162
Query: 159 NLSCEFCSRIFTKKEL 174
C K L
Sbjct: 163 RGGCGNTQPTIRKDGL 178
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.1 bits (49), Expect = 8.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 281 KPHCCEICGRSYSTAAYLKVHMSCHTGE 308
+P C+IC + ++ L VH+ HTG+
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTGD 29
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 22.7 bits (48), Expect = 9.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 227 FICDVCGKSYVRKGALTEHHQR 248
F C CGK Y RK L EH R
Sbjct: 2 FECPKCGKCYFRKENLLEHEAR 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.135 0.439
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,992
Number of extensions: 64497
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 267
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.1 bits)