BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4576
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT 277
+C C + F++ + L H H K Y+C C K++ K +LT H +RT
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-----------QRT 71
Query: 278 AILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
++ + C CGKS+ ++ L H QR H G+KP C CGK L H THTG
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
KP+ C CG+S+S L H HTGE + C C + F +R + +H +TH
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
EK Y C CG H R KP C C + F+ K+ L H H K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKP--YKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHH 303
Y+C C K++ + NL H +RT ++ + C CGKS+ + L H
Sbjct: 77 PYKCPECGKSFSQRANLRAH-----------QRTHTGEKPYACPECGKSFSQLAHLRAH- 124
Query: 304 QREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
QR H G+KP C CGK + +L H THTG KP+ C CG+S+S L VH H
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 363 TG 364
TG
Sbjct: 185 TG 186
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSY 293
+ A+ K Y C C K++ +L H +RT ++ + C CGKS+
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEH-----------QRTHTGEKPYKCPECGKSF 59
Query: 294 VRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTA 352
K LT H QR H G+KP C CGK + +L H THTG KP+ C CG+S+S
Sbjct: 60 SDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 353 AYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
A+L+ H HTGE + C C + F + + H +TH
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 159 VCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLS 218
C C ++F + EH +H EK Y+C CG K H R KP
Sbjct: 23 ACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP--YK 79
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C C + F+++ LR+H H K Y C C K++ Q HL++ +RT
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF---------SQLAHLRAH--QRTH 128
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
++ + C CGKS+ R+ L HQR H G+KP C CGK + +L H THTG
Sbjct: 129 TGEKPYKCPECGKSFSREDNL-HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 338 K 338
K
Sbjct: 188 K 188
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 102 SGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCH 161
S S+ Q + E K Y C C +SF L H R G K C
Sbjct: 7 SSSVAQAALEPGE-----KPYACPECGKSFSRSDHLAEHQRTHTGEKPY--------KCP 53
Query: 162 YCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEF 221
C ++F K + H +H EK Y+C CG + H R KP +C
Sbjct: 54 ECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP--YACPE 110
Query: 222 CSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILK 281
C + F++ LR+H H K Y+C C K++ + NL H +RT +
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-----------QRTHTGE 159
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKK 311
+ + C CGKS+ R+ AL HQR H GKK
Sbjct: 160 KPYKCPECGKSFSRRDALNV-HQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 280 LKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
+++ + C CGKS+ + L + HQR H G+KP C CGK L H THTG K
Sbjct: 1 MEKPYKCPECGKSFSQSSNL-QKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 339 PHCCEICGRSYSTAAYLKVHMSCH 362
P+ C CG+S+S + +L H H
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTH 83
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
C CGK +L H THTG KP+ C CG+S+S ++ L+ H HTGE + C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 374 PQKFRQRSSYTLHYKTH 390
+ F + + H +TH
Sbjct: 67 GKSFSRSDHLSRHQRTH 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 241 IGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
+ K Y+C C K++ NL H +RT ++ + C CGKS+ + L
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKH-----------QRTHTGEKPYKCPECGKSFSQSSDL- 48
Query: 301 EHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
+ HQR H G+KP C CGK L+ H TH K
Sbjct: 49 QKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
KP+ C CG+S+S ++ L+ H HTGE + C C + F Q S H +TH
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
K Y+C C +SF L +H R G K C C ++F + +Q+H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKP--------YKCPECGKSFSQSSDLQKHQR- 53
Query: 180 SHMHEKLYQCDFCG 193
+H EK Y+C CG
Sbjct: 54 THTGEKPYKCPECG 67
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
EK Y+C CG H R KP C C + F++ L+ H H K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP--YKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 244 NYQCYYCRKTYCHKPNLTNH 263
Y+C C K++ +L+ H
Sbjct: 60 PYKCPECGKSFSRSDHLSRH 79
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSC 219
C C ++F + +Q+H + H EK Y+C CG H R KP C
Sbjct: 7 CPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP--YKC 63
Query: 220 EFCSRIFTKKELLRSHLAVHKIGK 243
C + F++ + L H H+ K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 283 EFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
F C +CGKS+ R L+ H + C CGK K + H HTG KPH C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 343 EICGRSYSTAAYLKVHMSCHTG 364
++CG+++S ++ L H HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
C ICGK +L+ H+ H+ +P+ C+ CG+ + + +K H HTGE H C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 374 PQKFRQRSSYTLHYKTH 390
+ F Q S+ H + H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEK 275
+ C+ C + F + L +HL +H + Y C YC K + H KS+++K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-------------HQKSDMKK 47
Query: 276 RTAI--LKREFICDVCGKSYVRKGALTEHHQREHQG 309
T I ++ C VCGK++ + L H R+H G
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLIT-HSRKHTG 82
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHH 303
++ C C K++ L+ H+ +H + R + C CGK + +K + + H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLL-IHSDT----------RPYPCQYCGKRFHQKSDMKK-H 48
Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
H G+KP C +CGK +L H HTG
Sbjct: 49 TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 122 YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
++C +C +SF+ L HL + C YC + F K+ +++H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL--------IHSDTRPYPCQYCGKRFHQKSDMKKHTF-IH 52
Query: 182 MHEKLYQCDFCG 193
EK ++C CG
Sbjct: 53 TGEKPHKCQVCG 64
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 278 AILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTI--CGKMLIDKRSLANHMN 332
A KR F+C C K Y + L + H R+H G+KP C C + L H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHL-QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
HTG+KP C+ C R +S + +LK H HTGE +C C +KF + H+ H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 42/148 (28%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C CN+ + + +Q H H EK YQCDF
Sbjct: 9 CAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDF-------------------------- 41
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT 277
+ C R F++ + L+ H H K +QC C++ + +L H RT
Sbjct: 42 --KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT-----------RT 88
Query: 278 AILKREFIC--DVCGKSYVRKGALTEHH 303
++ F C C K + R L HH
Sbjct: 89 HTGEKPFSCRWPSCQKKFARSDELVRHH 116
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + D +L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F+ L H+ +H K +QC C + + +LT HI
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 -----RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S ++ L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F + + HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F + L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCG 193
+H EK + CD CG
Sbjct: 55 -RTHTGEKPFACDICG 69
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + K +L H+ HTG KP C IC R++S A L H+ HTGE C +C +K
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + T H K H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + +K L + H R H G+KP C IC + + SL H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNL-DTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 337 LKPHCCEICGRSYST----AAYLKVHM 359
KP C+ICGR ++T + K+H+
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHL 86
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++K L +H+ +H K +QC C + + + +L HI
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + T H
Sbjct: 55 -----RTHTGEKPFACDICGRKFATLHTRTRH 81
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S L H+ HTG+ C +C + F Q++S H +TH
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F K L H+R G K C C R F +A + HI
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK--------PFQCRICMRNFSQQASLNAHI 54
Query: 178 ISSHMHEKLYQCDFCG 193
+H EK + CD CG
Sbjct: 55 -RTHTGEKPFACDICG 69
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F K + HI H +K +QC C + H+R KP
Sbjct: 7 CPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F H +H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + + G+LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + SL H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++ L H+ +H K +QC C + + +LT HI
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 -----RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S + L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F + HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCG 193
+H EK + CD CG
Sbjct: 55 -RTHTGEKPFACDICG 69
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
C +CGK K L HM HTG+KP+ C+ C + + ++ L H+ H+ E C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 374 PQKFRQRSSYTLHYKTH 390
P R S T+H ++H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEI 344
C+VCGK + RK L + H R H G KP C C D SL H+ H+ +P C+I
Sbjct: 11 CEVCGKCFSRKDKL-KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 345 CGRSYSTAAYLKVHMSCHTGET 366
C + ++ L VH+ HTG++
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDS 91
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
PH CE+CG+ +S LK HM CHTG + C C SS H + H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
CE C + F++K+ L++H+ H K Y+C C +L H+ R
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-----------RIH 59
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQG 309
+R F C +C + LT H R H G
Sbjct: 60 SDERPFKCQICPYASRNSSQLTV-HLRSHTG 89
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 122 YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
++C +C + F K L H+R G+K C C+ + + +H + H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPY--------KCKTCDYAAADSSSLNKH-LRIH 59
Query: 182 MHEKLYQCDFCGSQQRTKCRFYYHLR 207
E+ ++C C R + HLR
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLR 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + R LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++ L H+ +H K +QC C + + +LT HI
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 -----RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S +A L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F A++ HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCGSQ 195
+H EK + CD CG +
Sbjct: 55 -RTHTGEKPFACDICGRK 71
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + R LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++ L H+ +H K +QC C + + +LT HI
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 -----RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S +A L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F A + HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCGSQ 195
+H EK + CD CG +
Sbjct: 55 -RTHTGEKPFACDICGRK 71
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + R LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++ + L H+ +H K +QC C + + +LT HI
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 -----RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S + L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F ++ HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCGSQ 195
+H EK + CD CG +
Sbjct: 55 -RTHTGEKPFACDICGRK 71
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
CGK K HM+ H GL+P+ C +CG+ + +L HM HTG + C++C ++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 377 FRQRSSYTLH 386
F R S+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR 347
CGKS+ K + + H H G +P C +CGK K L HM HTG+KP+ C IC +
Sbjct: 15 CGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 348 SY 349
+
Sbjct: 74 RF 75
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL---SCEFCSRIFTKKELLRSHLAVHK 240
+KLY C CG K + RD+H+S L C C + F K L H+ +H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQ-----RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 241 IGKNYQCYYCRKTYCHKPNLTNHIQN 266
K Y+C C K + + + H+ +
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
K Y C C K++ HK H+ ++HL R + C VCGK + K L
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHM-SMHLG----------LRPYGCGVCGKKFKMKHHLVG- 55
Query: 303 HQREHQGKKPV-CTICGKMLIDKRSLANHMNT 333
H + H G KP C IC K + + S H+ +
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV 394
+G K + C+ CG+S++ + HMS H G + C +C +KF+ + H K H G+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGI 63
Query: 395 IP 396
P
Sbjct: 64 KP 65
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFC 222
C ++F K++ H+ S H+ + Y C CG + + K H++ KP C C
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP--YECNIC 71
Query: 223 SRIFTKKELLRSHL 236
++ F ++ H+
Sbjct: 72 AKRFMWRDSFHRHV 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
+R + C V C + + R LT H R H G+KP C IC + L H+ THTG
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
+P E C R F++ + L H+ +H K +QC C + + +LT HI
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-------- 53
Query: 273 LEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 54 ---RTHTGEKPFACDICGRKFARSDERKRH 80
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S + L H+ HTG+ C +C + F + T H +TH
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 56
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F ++ HI H +K +QC C H+R KP
Sbjct: 6 CPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 62
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 53
Query: 178 ISSHMHEKLYQCDFCGSQ 195
+H EK + CD CG +
Sbjct: 54 -RTHTGEKPFACDICGRK 70
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
+R + C V C + + R LT H R H G+KP C IC + L H+ THTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++ + K H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + L H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
+P E C R F++ + L H+ +H K +QC C + + +LT HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-------- 54
Query: 273 LEKRTAILKREFICDVCGKSYVRKGALTEH 302
RT ++ F CD+CG+ + R H
Sbjct: 55 ---RTHTGEKPFACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S + L H+ HTG+ C +C + F + T H +TH
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C+R F ++ HI H +K +QC C H+R KP
Sbjct: 7 CPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP--F 63
Query: 218 SCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F L RH+R G K C C R F + HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQK--------PFQCRICMRNFSRSDHLTTHI 54
Query: 178 ISSHMHEKLYQCDFCGSQ 195
+H EK + CD CG +
Sbjct: 55 -RTHTGEKPFACDICGRK 71
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 295 RKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTA 352
R + H H + VC CGK ++ L H HTG KP C E CG+ +S
Sbjct: 18 RDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 77
Query: 353 AYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
L+ H+ HTG+ + C C +KF Q ++ H TH
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTI--CGKMLIDKRSLANHMNTHTGLK 338
R +C CGK++V L + HQ H G+KP CT CGK +L H+ HTG +
Sbjct: 33 RVHVCAECGKAFVESSKL-KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 339 PHCCEI--CGRSYSTAAYLKVHMSCHT 363
P+ C C + ++ + LK H+ H
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 127 CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKL 186
C + F + + +HL HG ++ VC C + F +K++ H + H EK
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVH--------VCAECGKAFVESSKLKRHQLV-HTGEKP 62
Query: 187 YQCDFCGSQQRTKCRFYY--HLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKN 244
+QC F G +R F H+R +P + C++ F + L+SH+ H KN
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 245 YQ 246
Q
Sbjct: 123 NQ 124
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 210 HLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQNV 267
H P C C + F + L+ H VH K +QC + C K + NL H+
Sbjct: 28 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV--- 84
Query: 268 HLKSELEKRTAILKREFIC--DVCGKSYVRKGALTEH 302
R R ++C D C K + + L H
Sbjct: 85 --------RIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
++R + C V C + + +K L + H R H G+KP C IC + L H+ THTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNL-DTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
KP C+ICGR ++T H H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + K +L H+ HTG KP C IC R++S L H+ HTGE C +C +K
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 211 LSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
+ +P E C R F++K L +H+ +H K +QC C + + L HI
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI------ 54
Query: 271 SELEKRTAILKREFICDVCGKSYV 294
RT ++ F CD+CG+ +
Sbjct: 55 -----RTHTGEKPFACDICGRKFA 73
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P+ C E C R +S L H+ HTG+ C +C + F Q + H +TH
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
+ Y C + C+ F K L H+R G K C C R F + +HI
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK--------PFQCRICMRNFSQHTGLNQHI 54
Query: 178 ISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
+H EK + CD CG + T H RD+H
Sbjct: 55 -RTHTGEKPFACDICGRKFAT-----LHTRDRH 81
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
K+EFIC CG+ + + L H+R H ++P C IC K + L +H H+ KP
Sbjct: 15 KKEFICKFCGRHFTKSYNLLI-HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
C+ CG+ + + L VH + H +S T
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 310 KKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
K+ +C CG+ +L H THT +P+ C+IC +++ +L+ H H+ E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 370 CHLCPQKFRQRSSYTLHYKTHHPGVIP 396
C C + F Q + +H H P
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
K K + C +C + + NL H +RT +R + CD+C K++ R+ L
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIH-----------ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTH 334
+ H+ H +KP C CGK R+LA H H
Sbjct: 62 RD-HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
+K + C FCG H R +P +C+ C + F +++ LR H +H K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERP--YTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
++C C K +C L H + +H+++
Sbjct: 73 PFKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 152 SRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHL 211
S+ K + +C +C R F + H +H E+ Y CD C R + HLRD
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQ----DHLRDHRY 66
Query: 212 --SKPANLSCEFCSRIFTKKELLRSHLAVH 239
SK C+ C + F + L H +H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANH-----MNTHTGLKP 339
C C K ++ K L H+ R+H G+KP C CGK K +L H MN +
Sbjct: 10 CPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-- 66
Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
C +C ++ L++HM HTGE + C C Q+F Q+ H H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 212 SKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
S + + C C + F K L+ H H K ++C C K Y K NL H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-------- 54
Query: 272 ELEKRTAILKRE--FICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLA 328
E R + + E F C VC +++ R+ L H H G+ P C+ C + + K+ L
Sbjct: 55 --EARNCMNRSEQVFTCSVCQETFRRRMEL-RLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Query: 329 NHM-NTHTG 336
+HM H+G
Sbjct: 112 SHMIKLHSG 120
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL-S 218
C C++ F SK ++ H H EK ++C CG K H +++ + +
Sbjct: 10 CPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C C F ++ LR H+ H Y+C C + + K +L +H+ +H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 111 HYLECKNRG----KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRT 166
+YL+ NR K +EC C + + K+ L +H + ++R + C C T
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLL-----EHEARNCMNRSEQVFTCSVCQET 75
Query: 167 FDSKAKIQEHIISSHMHEKLYQCDFCGSQ 195
F + +++ H++ SH E Y+C C Q
Sbjct: 76 FRRRMELRLHMV-SHTGEMPYKCSSCSQQ 103
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 123 ECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHM 182
EC C++ F +K L H R G K C C + + K + EH + M
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEK--------PFECPKCGKCYFRKENLLEHEARNCM 60
Query: 183 H--EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHL 236
+ E+++ C C R + H+ P C CS+ F +K+ L+SH+
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP--YKCSSCSQQFMQKKDLQSHM 114
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
+R + CD CGKS+ L++ H+R H G+KP C CGK I + L H HTG P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 301 EHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS 360
E QRE ++ C CGK L+ H THTG KP+ C+ CG+++ ++L H
Sbjct: 10 EWQQRER--RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 361 CHTG 364
HTG
Sbjct: 68 VHTG 71
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
C+ CG+S+S ++ L H HTGE + C C + F QRS H++ H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
+ Y+C C K++ H +L+ H +RT ++ + CD CGK+++++ L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-----------RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 303 HQREHQGKKP 312
H R H G P
Sbjct: 66 H-RVHTGSGP 74
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 250 CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQG 309
C +T+ L H+ H+ + E C GKS+ K L +H R H G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE--CPREGKSFKAKYKLV-NHIRVHTG 87
Query: 310 KKPV-CTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG 364
+KP C CGK+ +L H THTG KP CE C R ++ ++ K HM HT
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Query: 365 ETS 367
+ S
Sbjct: 148 DKS 150
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH 371
C GK K L NH+ HTG KP C CG+ ++ + LK+H HTGE C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 372 L--CPQKFRQRSSYTLHYKTH 390
C ++F S H H
Sbjct: 125 FEGCDRRFANSSDRKKHMHVH 145
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEK--------LYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
C+RTF + ++ H+ H+ +C G + K + H+R KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 215 ANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHI 264
C +IF + E L+ H H K ++C + C + + + + H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 21/156 (13%)
Query: 102 SGSITQTYIHYLECKNRGKLYECSL------CNESFENKKVLFRHLRGKHGMKIKLSRHK 155
SGS Q L CK + E L C+ +F L H+ +H + + H
Sbjct: 3 SGSSGQPIKQELSCK---WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH- 58
Query: 156 TKCVCHY--CNR---TFDSKAKIQEHIISSHMHEKLYQCDF--CGSQQRTKCRFYYHLRD 208
VC++ C R +F +K K+ HI H EK + C F CG H R
Sbjct: 59 ---VCYWEECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 209 KHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKN 244
KP E C R F + H+ VH K+
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 275 KRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV---CTICGKMLIDKRSLAN 329
KRTA CD CGK+Y + L H R H G+KP CG L
Sbjct: 1 KRTAT----HTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTR 55
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
H HTG +P C+ C R++S + +L +HM H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
CGK L H+ THTG KP+ C+ CG ++ + L H HTG C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 375 QKFRQRSSYTLHYKTH 390
+ F + LH K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 340 HCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
H C+ CG++Y+ +++LK H+ HTGE + C C KF + T HY+ H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEKLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCE 220
C +T+ + ++ H+ +H EK Y CD+ CG + H R +P C+
Sbjct: 13 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP--FQCQ 69
Query: 221 FCSRIFTKKELLRSHLAVH 239
C R F++ + L H+ H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 187 YQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKN 244
+ CD+ CG HLR KP + + C F + + L H H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 245 YQCYYCRKTYCHKPNLTNHIQ 265
+QC C + + +L H++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 285 ICDV--CGKSYVRKGALTEHHQREHQGKKPV---CTICGKMLIDKRSLANHMNTHTGLKP 339
CD CGK+Y + L H R H G+KP CG L H HTG +P
Sbjct: 8 TCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 340 HCCEICGRSYSTAAYLKVHMSCH 362
C+ C R++S + +L +HM H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
CGK L H+ THTG KP+ C+ CG ++ + L H HTG C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 375 QKFRQRSSYTLHYKTH 390
+ F + LH K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 340 HCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
H C+ CG++Y+ +++LK H+ HTGE + C C KF + T HY+ H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEKLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCE 220
C +T+ + ++ H+ +H EK Y CD+ CG + H R +P C+
Sbjct: 14 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP--FQCQ 70
Query: 221 FCSRIFTKKELLRSHLAVH 239
C R F++ + L H+ H
Sbjct: 71 KCDRAFSRSDHLALHMKRH 89
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 187 YQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKN 244
+ CD+ CG HLR KP + + C F + + L H H +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 245 YQCYYCRKTYCHKPNLTNHIQ 265
+QC C + + +L H++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMK 87
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 272 ELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTI--CGKMLIDKRS 326
+LEKR R CD C K Y + L H R H G+KP CT C
Sbjct: 9 DLEKR-----RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDE 62
Query: 327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
L H HTG KP C +C RS+S + +L +HM H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
C K+ L H+ THTG KP+ C E C ++ + L H HTG C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 375 QKFRQRSSYTLHYKTH 390
+ F + LH K H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 254 YCHKPNLTN-HIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
YC P T + ++ HLK+ L T + + C + R LT H+ R+H G KP
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKP 75
Query: 313 V-CTICGKMLIDKRSLANHMNTH 334
C +C + LA HM H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 345 CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPGVIP 396
C + Y+ +++LK H+ HTGE + C C +F + T HY+ H G P
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP 75
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 205 HLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHI 264
HLR KP + E C F + + L H H K +QC C +++ +L H+
Sbjct: 36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 265 Q 265
+
Sbjct: 96 K 96
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 155 KTKCVCHYCNRTFDSKAKIQEHIISSHMH--EKLYQCDFCGSQQ-----RTKCRFYYHLR 207
+T C C++ FDS+ ++ HI S H+H K + C + G + + + H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 208 DKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQ 265
KP + E C + +++ E L++HL H K Y C + C K +
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF----------S 110
Query: 266 NVHLKSELEKRTAILKREFICDV--CGKSYVRKGALTEH 302
N +++ + RT ++ ++C + C K Y +L +H
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 287 DVCGKSYVRKGALTEHHQREH---QGKKPVCTICG-----KMLIDKRSLANHMNTHTGLK 338
D C + + + L H EH + K+ VC G + + L HM HTG K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 339 PHCC--EICGRSYSTAAYLKVHMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTHHPGV 394
PH C E C +SYS LK H+ HTGE + C C + F S H H
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 395 IP 396
P
Sbjct: 127 KP 128
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL--KPHCC 342
C++CGK + R H+ H G+KP C +CG K ++ H+ +H G KP+ C
Sbjct: 10 CEICGKIF-RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 343 EICGRSYSTAAYLKVHM-SCHTGETS 367
+ CG+ +S +L H+ H+G +S
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS--HTC 370
C ICGK+ D L H +H+G KP+ C +CG + + H+ H G + C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 371 HLCPQKFRQRSSYTLHYKTHHPG 393
C + F + H K H G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 152 SRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLR--DK 209
S + C C + F + H +S H EK Y C CG + + K R YH+R D
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 210 HLSKPANLSCEFCSRIFTKKELLRSHL 236
+ KP C+ C + F++ + L H+
Sbjct: 61 SVGKP--YICQSCGKGFSRPDHLNGHI 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 212 SKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
S + ++CE C +IF L H H K Y C C + K ++ H+++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS----- 57
Query: 272 ELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQG 309
+ + +IC CGK + R L H ++ H G
Sbjct: 58 ----HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKL 399
CEICG+ + +L H H+GE ++C +C +F+++ + H ++H V P +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
C C K +LA+H HTG KP+ C ICG ++ A LK H H+GE
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
+ + CD C S+ KG L H + H G+KP C ICG +L H H+G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
KP+ C+ C S+ L H + HTGE + C++C +F + ++ H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
K Y+C C+ ++ +K NL +H + VH ++ + C++CG + R L +
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTG----------EKPYRCNICGAQFNRPANL-KT 63
Query: 303 HQREHQGKKP 312
H R H G+KP
Sbjct: 64 HTRIHSGEKP 73
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
C C +F K + H + H EK Y+C+ CG+Q H R KP
Sbjct: 20 CDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP 396
+KP C IC R++S + +L H+ HTGE C +C +KF + H H ++P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILP 58
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
C IC + L H+ THTG KP C+ICGR ++ + K H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
K +QC C + + +LT HI RT ++ F CD+CG+ + R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-----------RTHTGEKPFACDICGRKFARSDERKRH 50
Query: 303 HQREH 307
+H
Sbjct: 51 RDIQH 55
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGK 319
+ F C +C +++ R LT H R H G+KP C ICG+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGR 39
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL 372
+C +C + + SL H N H+ K + C C + + A Y H HTGE + C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 373 CPQKFRQRSSYTLHYKTHH 391
C + F + H K+ H
Sbjct: 84 CGKSFINYQFMSSHIKSVH 102
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
+IC VC +SYV +L H KK C C K+ H HTG + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 344 ICGRSYSTAAYLKVHM-SCHTGETS 367
CG+S+ ++ H+ S H+ + S
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPS 107
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C C R + LR H +H K Y C YC K + T H +H E
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH--EIHHTGE------ 76
Query: 279 ILKREFICDVCGKSYVRKGALTEH 302
R + C CGKS++ ++ H
Sbjct: 77 ---RRYQCLACGKSFINYQFMSSH 97
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C +C ++F E H H + YQC C K++ + +++HI++VH
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
C +C RSY L+ H + H+ E + C C + F + Y ++ HH G
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF-PLAEYRTKHEIHHTG 75
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHT 335
++ + C CGK++ R L + HQR H G+KP C CGK L NH HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQ-HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
KP+ C CG+++S ++ L H HTGE + C C + F Q S H + H G
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
C CGK L H HTG KP+ C CG+++S + L H HT S
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C C + F++ +L H VH K Y+C C K + L NH Q +H
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTH 334
+R F C+ CGK+Y L+ H+R H G +P C CGK D+ + H+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSR-HRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
C CGK D L+ H H G +P C CG+ + + + H+ H + +
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+P C CG++Y A+ L H H G +C C + FR +S H K H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
C CG+ + + YL +H+ HTGE + C C Q++S H + HH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
C+ CGK L H+ THTG KP+ CE C + + L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
C YC + F S + H+ +H EK Y+C+FC K YHL H
Sbjct: 7 CSYCGKFFRSNYYLNIHL-RTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C +C + F L HL H K Y+C +C K +L H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 188 QCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
+C +CG R+ HLR KP CEFC +K LR HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKP--YKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
CE+C R+++ +LK H HT E + C LC + F +R H + H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
+ CE C+R F ++E L+ H H K Y C C + + + L H Q +H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS-CHTG 364
VC +C + + L H +HT KP+ C +C R+++ L H H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMN-THTG 336
F+C+VC +++ R+ L H+ R H +KP C +C + + L H H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 310 KKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGE 365
K+ +C+ CG L H++ HTG KP C E C + +++ +L H HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 366 TSHTCHL--CPQKFRQRSSYTLHYKTHH 391
+ TC C +F +++ H+ H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 185 KLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIG 242
K Y C F CG+ + HL KP E C + FT L H H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVH 268
KN+ C C + K N+ H H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+G+KP+ C CG+++ + +YL +HM HTGE
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 308 QGKKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
G KP C+ CGK K L HM THTG KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHT 363
C + L H+ HTG KP C IC R++S + +L H+ HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 337 LKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
++P+ C + C R +S + L H+ HTG+ C +C + F + T H +TH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQ 265
+P E C R F++ + L H+ +H K +QC C + + +LT HI+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 282 REFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHT 335
R + C V C + + R LT H R H G+KP C IC + L H+ THT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+G KP+ C CG+ +S+ +YL VH HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 322 IDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQ 379
ID + +H+ +H G CG++Y +++LK H HTGE +C C ++F +
Sbjct: 10 IDSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 380 RSSYTLHYKTH 390
+ H +TH
Sbjct: 62 SDELSRHRRTH 72
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCH 362
CGK L H THTG KP C C R ++ + L H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++S+ +YL +HM H+GE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C+ CGK K L HM TH+G KP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKP 339
+CT+CGK D+ +L H HTG KP
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
+R +IC VCGK++ + L + HQ+ H G+KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIK-HQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+P+ C +CG++++ + L H HTGE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C C F K HL + + + C YC T+ P LT HI H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 124 CSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMH 183
C +C ESF +K RHLR H ++ C YC TF S + HI H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVF--------PCKYCPATFYSSPGLTRHINKCHPS 82
Query: 184 E 184
E
Sbjct: 83 E 83
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 285 ICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMN 332
+C VCG+S+ KGA H + H + C C L H+N
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP 392
H C +CG S+++ + H+ C CP F T H HP
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+S++ + L++H CHTGE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
+KP+ C CG+++ + +YL +H HTGE+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESG 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 238 VHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKG 297
H K Y C +C KT+ K L H + H + + F+C CGK++ R+
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN-------FVPAAFVCSKCGKTFTRRN 61
Query: 298 ALTEH 302
+ H
Sbjct: 62 TMARH 66
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH-PGVIP 396
HTGE + C C + FRQ+ +H+K +H P +P
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP 45
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSK--PANLSCEFCSRIFTKKELLRSHL 236
+H EK Y C C R K H + H PA C C + FT++ + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGK----KPVCTICGKMLIDKRS 326
S RT ++ + C C K++ +K L H +R H VC+ CGK + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 327 LANHMNTHTG 336
+A H + G
Sbjct: 63 MARHADNCAG 72
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C ICG+S++ + L VH HTGE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C+ICGK K L H HTG KP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C +CGKS+ +K L HQ+ H G+KP G
Sbjct: 10 EKPYECSICGKSFTKKSQL-HVHQQIHTGEKPSGPSSG 46
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGET 366
KPH C CG+S+S + L VH HTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGEN 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM 359
K +C CG L H+ THT ++P+ C C S+ T L HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQN 266
CE C K +L+ H+ H + Y C YC ++ K NLT H+++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGET 366
KP+ C +CG+++ +A+L H+ HT ET
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGET 366
+G KP+ C+ CG++++ ++ L +H HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ +IC+ CGKS+++K L H+R H G+KP G
Sbjct: 10 EKPYICNECGKSFIQKSHLNR-HRRIHTGEKPSGPSSG 46
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKP 339
+C CGK I K L H HTG KP
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+S+ ++L H HTGE
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ CE CG+ Y++ L +H HTGE
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK+ LANH HTG+KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+R + C CGK++++K L+ HQR H+G+KP G
Sbjct: 10 ERHYECSECGKAFIQKSTLS-MHQRIHRGEKPSGPSSG 46
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C+ CGK I K +L+ H H G KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C +C K K LA H THTG KP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C++C ++++ A+L H HTGE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C VC K++ +K L + HQ+ H G+KP G
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQ-HQKTHTGEKPSGPSSG 46
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 219 CEFCSRIFTK-KELLRSHLAVHKIG-KNYQCYYCRKTYCHKPNLTNHIQNVH 268
C+ CSR++T R ++ HK K Y C +C K + K N+T H++ +H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 188 QCDFCGSQQRTKCRFYYHLRDKHLSKPANL--SCEFCSRIFTKKELLRSH 235
QC+ CG R K +H R KH A L CEFC + F K + + +H
Sbjct: 9 QCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
+G KP+ C CG++++ + L VH HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + CDVC K++ +LT+ HQR H G+KP G
Sbjct: 10 EKPYECDVCRKAFSHHASLTQ-HQRVHSGEKPSGPSSG 46
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C CGK++ +K LT+ HQR H G+KP G
Sbjct: 10 EKPYRCGECGKAFAQKANLTQ-HQRIHTGEKPSGPSSG 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK K +L H HTG KP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG++++ A L H HTGE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ F C CGKSY ++ LT+ HQR H G+KP G
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQ-HQRVHTGEKPSGPSSG 46
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP C CG+SY+ +L H HTGE
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGE 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+R + C CGK++ RK L HQR H G+KP G
Sbjct: 10 ERHYECSECGKAFARKSTLI-MHQRIHTGEKPSGPSSG 46
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP C+ C R +S + +LK H HTGE
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
+G KP+ C+ CG+S+S L VH HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C++CG+++ +++L H S H+GE
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
+G KP+ C CG+++ + L +H HTGE+ +
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPS 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGE 365
C++CG+ +S +++L+ H HTGE
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ CDVCGK + + L + HQR H G+KP
Sbjct: 13 YKCDVCGKEFSQSSHL-QTHQRVHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+PH C CG+S+ +A+L H HTGE
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+R C+ CGKS+++ L + HQR H G+KP G
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQ-HQRIHTGEKPSGPSSG 46
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 42/158 (26%)
Query: 274 EKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPVC---TICGKMLIDKRSLA 328
EK ++ + +IC CG +Y + L + H +H G+KP C K L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKL-QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 329 NHMNTHTGLKPHCC----------------------------------EICGRSYSTAAY 354
H THTG K C E CG+++
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 355 LKVHMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTH 390
LKVH HT + + C C ++F S H K H
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 68/192 (35%), Gaps = 28/192 (14%)
Query: 185 KLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIG 242
K Y C F CG+ + HL KP E C + FT L H H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFIC--DVCGKSYVRKGA 298
KN+ C C + K N+ H H I ++C + CGK++ +
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFH---------NIKICVYVCHFENCGKAFKKHNQ 121
Query: 299 LTEHHQREHQGKKPVCTICGKMLIDKR-----SLANHMNTHTGL---KPHCCEICGRSYS 350
L HQ H + P C DKR L H H G K C G++++
Sbjct: 122 LKV-HQFSHTQQLPY--ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Query: 351 TAAYLKVHMSCH 362
YLK CH
Sbjct: 179 L--YLKHVAECH 188
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C VCGK++ + +L+ HQR H GKKP G
Sbjct: 10 EKPYECSVCGKAFSHRQSLSV-HQRIHSGKKPSGPSSG 46
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C++CGK ++SL+ H H+G KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C +CG+++S L VH H+G+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++S + L H HTGE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C+ CGK++ +K L+ H QR H G+KP G
Sbjct: 10 EKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSSG 46
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK K L+ H THTG KP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C+ CG+++ +A L H HTGE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ ++CD CGK++ L HQR H G+KP G
Sbjct: 10 EKPYVCDYCGKAFGLSAELV-RHQRIHTGEKPSGPSSG 46
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP C CG+S+S ++ L H HTGE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+ F C CGK++ RK L+ HQ+ H G+KP G
Sbjct: 11 KHFECTECGKAFTRKSTLS-MHQKIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
CT CGK K +L+ H HTG KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+KP+ C CG+++S + L H HTGE
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C+ CGK+++ L E HQR H G+KP G
Sbjct: 10 EKPYNCEECGKAFIHDSQLQE-HQRIHTGEKPSGPSSG 46
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ CE CG+++ + L+ H HTGE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTG 364
KP+ C+ CG+++S L VH+ HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK D+ +L H HTG KP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 5 ACAQTNEAGVMNIDVIAYGSVCRDVKLHDLPCSV----SDEVV 43
A AQT E GV +D Y D+K D+P V D+VV
Sbjct: 184 AMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDDQVV 226
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
K+ +C+ CGK++ + L++ HQR H G+KP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSK-HQRIHSGEKP 38
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 309 GKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
GKKP VC CGK L+ H H+G KP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGET 366
+G KP+ C CG+++ + L +H HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
+R + C CGKS+ +KG+LT H+R H G P
Sbjct: 8 QRVYECQECGKSFRQKGSLT-LHERIHTGSGP 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTG 364
KP+ CE CG + A+L+ H+ HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLK 270
K YQC YC K + NL HI+ H K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C++C +S+ + L VH HTGE
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + CDVC KS+ R G+ HQR H G+KP G
Sbjct: 10 EKPYKCDVCHKSF-RYGSSLTVHQRIHTGEKPSGPSSG 46
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
+G KP+ C CG++++ + L VH HTG
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 309 GKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
G+KP C CGK K L H HTG+KP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTG 364
KP+ CEICG + LK H+ HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK + SLA H TH+G KP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++ + L +H + H+GE
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHL 236
+H EK Y+C C ++ H+ KH A C C + +K L HL
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGET 366
KP+ C CG+S+ + L VH HTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
KP+ CE CG+ Y+ L +H H GE +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ F C CGK + R+ AL HH+ H G+KP G
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGPSSG 46
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++S + L H HTGE
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGET 366
+G K H C CG+++S + L +H HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 338 KPHCCEI--CGRSYSTAAYLKVHMSCHTGE 365
K H C I CG+ Y ++L+ H+ HTGE
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG++++ + L +H HTGE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
KP+ C C ++++T + L VH HTGE+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESG 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 277 TAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+ ++ F CD C KS+ ++ AL H H G+KP G
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRM-IHTGEKPSGPSSG 46
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP CE CG+ ++ ++L H HTGE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 286 CDV--CGKSYVRKGALTEHHQREHQGKKPVC---TICGKMLIDKRSLANHMNTHTGLKPH 340
CD CG+ + + L H + +H +K CGK K+ L HM H+ + +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 341 CCEICGRS 348
CE G S
Sbjct: 70 ICEFSGPS 77
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKP 339
C CGK+ L NH HTG KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C+ CG+++S +L H HTGE
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 338 KPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTCHL 372
KP+ C+ CG+ +S +L H+ HT E H C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 308 QGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
G+KP VCT CGK I K H HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++S + L H HTGE
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 339 PHCCEICGRSYSTAAYLKVHMSCHTGE 365
P C CG+ ++T+ LK H+ H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
K+ Y+C YC P+L ++ H+ SE +L ++C C R AL
Sbjct: 14 KVEGGYECKYCT---FQTPDL--NMFTFHVDSE--HPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 300 TEHHQREHQGKK 311
+EH+ + H G++
Sbjct: 67 SEHNLKYHPGEE 78
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 310 KKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
KKP C CGK+ LA H HTG KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGE 365
CE+C R+++ YLK H HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+++S + L H + HTG+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
++ + C+ CGK++ + +LT HQ H GKKP G
Sbjct: 10 EKPYECNQCGKAFSVRSSLTT-HQAIHTGKKPSGPSSG 46
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
K+ + C CGK++++ +L H + H G+KP G
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
+ C CGK++ RK L H QR H G+KP G
Sbjct: 13 YECHECGKAFSRKYQLISH-QRTHAGEKPSGPSSG 46
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
K+ F C+ C K++ + +LT HQR H G+KP G
Sbjct: 10 KKLFKCNECKKTFTQSSSLTV-HQRIHTGEKPSGPSSG 46
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP C +CG++++ A+ L H+ HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 144 KHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
MK+ + + VC+ CN F + + + EH+ S H
Sbjct: 85 PQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 122
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
K H C CGR ++ ++L H HTGE
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP CE CG+ ++ + L H HTGE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 145 HGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
MK+ + + VC+ CN F + + + EH+ S H
Sbjct: 104 QSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 310 KKPVCTICGKMLIDKRSLANHMNTHTGLKPH 340
K+ C ICGK+ D L H +H+G KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,071,899
Number of Sequences: 62578
Number of extensions: 471433
Number of successful extensions: 2487
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 1001
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)