RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4576
(400 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 107 bits (269), Expect = 1e-27
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C C + F++ + L H H K Y+C C K++ K +LT H Q H EK
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTG---EK--- 76
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
+ C CGKS+ ++ L H QR H G+KP C CGK L H THTG
Sbjct: 77 ----PYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
KP+ C CG+S+S L H HTGE + C C + F +R + +H +TH
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 92.9 bits (232), Expect = 2e-22
Identities = 55/148 (37%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C C + F+ K+ L H H K Y+C C K++ + NL H Q H EK
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTG---EK--- 104
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
+ C CGKS+ + L H QR H G+KP C CGK + +L H THTG
Sbjct: 105 ----PYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C CG+S+S L VH HTG+
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 79.0 bits (196), Expect = 2e-17
Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 292 SYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYS 350
S + G+KP C CGK LA H THTG KP+ C CG+S+S
Sbjct: 2 SEFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 351 TAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
L H HTGE + C C + F QR++ H +TH
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 72.9 bits (180), Expect = 2e-15
Identities = 60/183 (32%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 160 CHYCNRTFDSKAKIQEH--IISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C C ++F + EH H EK Y+C CG K H R KP
Sbjct: 24 CPECGKSFSRSDHLAEHQRT---HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK- 79
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT 277
C C + F+++ LR+H H K Y C C K++ +L H Q H EK
Sbjct: 80 -CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG---EK-- 132
Query: 278 AILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
+ C CGKS+ R+ L H QR H G+KP C CGK + +L H THTG
Sbjct: 133 -----PYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 337 LKP 339
K
Sbjct: 187 KKT 189
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 86.4 bits (215), Expect = 6e-21
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEIC 345
C K Y + L H R+H G+KP C C + L H HTG+KP C+ C
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 346 GRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
R +S + +LK H HTGE +C C +KF + H+ H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.5 bits (75), Expect = 0.075
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 184 EKLYQCD--FCGSQQRTKCRFYYHLRDKHLS-KPANLSCEFCSRIFTKKELLRSHLAVHK 240
++ + C C + H R KH KP + C R F++ + L+ H H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 241 IGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDV--CGKSYVRKGA 298
K +QC C++ + +L H RT ++ F C C K + R
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTH-----------TRTHTGEKPFSCRWPSCQKKFARSDE 111
Query: 299 LTEHHQREH 307
L H H
Sbjct: 112 LV-RHHNMH 119
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 84.9 bits (211), Expect = 2e-20
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHM---NTHTGLKPHC 341
C C K ++ K L H R+H G+KP C CGK K +L H + +
Sbjct: 10 CPTCHKKFLSKYYLK-VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH-YKTH 390
C +C ++ L++HM HTGE + C C Q+F Q+ H K H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 50.6 bits (122), Expect = 4e-08
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH 386
+G C C + + + YLKVH HTGE C C + + ++ + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 47.9 bits (115), Expect = 3e-07
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHK 240
+C C + +K H R KP C C + + +KE L H A +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP--FECPKCGKCYFRKENLLEHEARNC 59
Query: 241 I--G-KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKG 297
+ + + C C++T+ + L H H E + C C + +++K
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLH-MVSHTG---EM-------PYKCSSCSQQFMQKK 108
Query: 298 ALTEHHQREHQGKK 311
L H + H G
Sbjct: 109 DLQSHMIKLHSGPS 122
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 84.2 bits (209), Expect = 1e-19
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCG-----KSYVRKG 297
+ + C + + + L +HI + H+ E ++EF+C G + + +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGE--------RKEFVCHWGGCSRELRPFKAQY 53
Query: 298 ALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTA 352
L H R H G+KP CT C K +L H+ +HTG KP+ CE C +++S A
Sbjct: 54 MLV-VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112
Query: 353 AYLKVHMSC-HTGETSHTCHL--CPQKFRQRSSYTLHYKTHH 391
+ H + H+ E + C L C +++ SS H KT H
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 78.8 bits (195), Expect = 1e-17
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIG---KNYQCYYCRKTYCHKP-----NLTNHIQNVHLK 270
+ CS+ F +E L H+ I K + C++ + +P L H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM------ 59
Query: 271 SELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKR 325
R ++ C C KSY R L H R H G+KP +C C K +
Sbjct: 60 -----RRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 326 SLANHMN-THTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG 364
A H N TH+ KP+ C++ C + Y+ + L+ H+ G
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 71.1 bits (175), Expect = 4e-15
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 45/188 (23%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMH--EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPA 215
C C++ FDS+ ++ HI S H+H K + C + G
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSEL 273
C R F + +L H+ H K ++C + CRK+Y NL H
Sbjct: 42 ---CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH---------- 88
Query: 274 EKRTAILKREFIC--DVCGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLA 328
R+ ++ ++C + C K++ +H R H +KP VC + C K D SL
Sbjct: 89 -LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 329 NHMNTHTG 336
H+ T G
Sbjct: 148 KHVKTVHG 155
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 81.8 bits (203), Expect = 3e-19
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI--C 345
C K + A+ +H H G + VC CGK ++ L H HTG KP C C
Sbjct: 13 CTKMFRDNSAMRKH-LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 346 GRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
G+ +S L+ H+ HTG+ + C C +KF Q ++ H TH
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 71.4 bits (176), Expect = 2e-15
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
+ C + C K + + H + H + +C CGK++V L
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-LHTHG----PRV-------HVCAECGKAFVESSKLK 51
Query: 301 EHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYL 355
H Q H G+KP CT CGK +L H+ HTG +P+ C C + ++ + L
Sbjct: 52 RH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Query: 356 KVHMSCHTGE 365
K H+ H
Sbjct: 111 KSHILTHAKA 120
Score = 57.9 bits (141), Expect = 9e-11
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIG-KNYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
+ + C+++F +R HL H G + + C C K + L H Q VH
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRH-QLVHTG- 59
Query: 272 ELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRS 326
EK F C CGK + L H R H G +P VC C K +
Sbjct: 60 --EK-------PFQCTFEGCGKRFSLDFNLR-THVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 327 LANHMNTHTGLKPH 340
L +H+ TH K +
Sbjct: 110 LKSHILTHAKAKNN 123
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 82.7 bits (205), Expect = 4e-19
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 8/154 (5%)
Query: 222 CSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILK 281
+ S + + + C +T+ L H+ H ++ +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH--VGGPEQNNHVC 60
Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLK 338
C GKS+ K L +H R H G+KP C CGK+ +L H THTG K
Sbjct: 61 YWEECPREGKSFKAKYKLV-NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK 119
Query: 339 PHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTC 370
P CE C R ++ ++ K HM HT + S
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 81.9 bits (203), Expect = 7e-19
Identities = 36/138 (26%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 268 HLKSELE-KRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP----------VCTI 316
+K EL K + C +++ L H P C
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELV-THVTMEHVGGPEQNNHVCYWEECPR 67
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL-- 372
GK K L NH+ HTG KP C CG+ ++ + LK+H HTGE C
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 373 CPQKFRQRSSYTLHYKTH 390
C ++F S H H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
Score = 70.4 bits (173), Expect = 8e-15
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 290 GKSYVRKGALTEH--HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHC----- 341
G S + + + + + C + L H+ P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 342 ----CEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
C G+S+ L H+ HTGE C C + F + + +H +TH
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 42.7 bits (101), Expect = 4e-05
Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 33/152 (21%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCV-CHYCNRTFDSKAKIQEHII 178
C+ +F L H+ +H + + H C ++F +K K+ H I
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-I 82
Query: 179 SSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAV 238
H EK + C F G C +IF + E L+ H
Sbjct: 83 RVHTGEKPFPCPFPG----------------------------CGKIFARSENLKIHKRT 114
Query: 239 HKIGKNYQCYY--CRKTYCHKPNLTNHIQNVH 268
H K ++C + C + + + + H +VH
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKH-MHVH 145
Score = 36.5 bits (85), Expect = 0.005
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 346 GRSYSTAAYLKVHMSC---HTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
G S S+ +K +SC + S C + F H H
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 77.8 bits (193), Expect = 4e-18
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI 344
C+VCGK + RK L H R H G KP C C D SL H+ H+ +P C+I
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 345 CGRSYSTAAYLKVHMSCHTGETSHTC 370
C + ++ L VH+ HTG++ +
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 73.6 bits (182), Expect = 1e-16
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
P C +CGK K L HM HTG+KP+ C+ C + + ++ L H+ H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 366 TSHTCHLCPQKFRQRSSYTLHYKTH 390
C +CP R S T+H ++H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 58.6 bits (143), Expect = 3e-11
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+ PH CE+CG+ +S LK HM CHTG + C C SS H + H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 45.9 bits (110), Expect = 8e-07
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 41/125 (32%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
CE C + F++K+ L++H+ H K Y+C C +L
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNK---------------- 54
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
H R H ++P C IC + L H+ +HTG
Sbjct: 55 ------------------------HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 338 KPHCC 342
Sbjct: 91 SGPSS 95
Score = 26.2 bits (59), Expect = 6.6
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
++C +C + F K L H+R G+K +K C C+ + + +H+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVK----PYK----CKTCDYAAADSSSLNKHLR- 57
Query: 180 SHMHEKLYQCDFCG 193
H E+ ++C C
Sbjct: 58 IHSDERPFKCQICP 71
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 80.7 bits (200), Expect = 5e-18
Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 23/181 (12%)
Query: 222 CSRIFTKKELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEKRTAI 279
C + K L++HL H K + C C K + +LT H T
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-----------SLTHT 68
Query: 280 LKREFICD--VCGKSYVRKGALTEHHQREHQGKKP---VCTI--CGKMLIDKRSLANHMN 332
++ F CD C + K + +H K VC CGK L H
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 333 THTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
+HT P+ C E C + +S + LK H H G C + + Y H
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Query: 391 H 391
H
Sbjct: 188 H 188
Score = 69.2 bits (170), Expect = 5e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 303 HQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTAAYLKV 357
+ K +C+ CG L H+ HTG KP C+ C + +++ +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 358 HMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTHH 391
H HTGE + TC C +F +++ H+ H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 51.4 bits (124), Expect = 6e-08
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 329 NHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH--LCPQKFRQRSSYT 384
K + C CG +Y+ L+ H+ HTGE C C + F T
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 385 LHYKTH 390
H TH
Sbjct: 62 RHSLTH 67
Score = 44.9 bits (107), Expect = 1e-05
Identities = 49/202 (24%), Positives = 64/202 (31%), Gaps = 36/202 (17%)
Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKT-----KCVCHYCNRTFDSKAK 172
K Y CS C ++ L HL KH T C C + F S
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLC-KH----------TGEKPFPCKEEGCEKGFTSLHH 59
Query: 173 IQEHIISSHMHEKLYQCD--FCGSQQRTKCRFYYHLRDKHLSKPANLSCEF--CSRIFTK 228
+ H ++ H EK + CD C + TK H H K C F C + F K
Sbjct: 60 LTRHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 229 KELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFIC 286
L+ H H Y+C C K + L H + VH +K
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKK----------D 167
Query: 287 DVCGKSYVRKGALTEHHQREHQ 308
D C +H HQ
Sbjct: 168 DSCSFVGKTWTLYLKHVAECHQ 189
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 77.1 bits (191), Expect = 1e-17
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR 347
CGKS+ K H H G +P C +CGK K L HM HTG+KP+ C IC +
Sbjct: 15 CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 348 SYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT 384
+ H + S+ Q + S +
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 67.1 bits (165), Expect = 4e-14
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 305 REHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
G K CGK K HM+ H GL+P+ C +CG+ + +L HM HTG
Sbjct: 3 SGSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 365 ETSHTCHLCPQKFRQRSSYTLHYKTH 390
+ C++C ++F R S H
Sbjct: 63 IKPYECNICAKRFMWRDS--FHRHVT 86
Score = 61.7 bits (151), Expect = 4e-12
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
K Y C C K++ HK H ++HL + + C VCGK + K L
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRH-MSMHLG---LR-------PYGCGVCGKKFKMKHHLV-G 55
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL 355
H + H G KP C IC K + + S H + + K + ++ + A+
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 49.4 bits (119), Expect = 8e-08
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C+ C + FT K H+++H + Y C C K + K +L H +H K
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTG---IK--- 64
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLAN 329
+ C++C K ++ + + H+ K + + ++
Sbjct: 65 ----PYECNICAKRFMWRDSF---HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 28.2 bits (64), Expect = 1.7
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
+ Y C +C + F+ K L H++ G+K ++ C+ C + F + H+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIK----PYE----CNICAKRFMWRDSFHRHV-- 85
Query: 180 SHMHEKLYQCDFCG 193
K Y+
Sbjct: 86 -TSCTKSYEAAKAE 98
Score = 27.0 bits (61), Expect = 5.2
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFC 222
C ++F K++ H+ S H+ + Y C CG + + K H++ KP C C
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP--YECNIC 71
Query: 223 SRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTN 262
++ F ++ H V K+Y+ + ++
Sbjct: 72 AKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 76.4 bits (189), Expect = 1e-17
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR 347
C + + + G+LT H R H G+KP C IC + L H+ THTG KP C+ICGR
Sbjct: 12 CDRRFSQSGSLT-RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 348 SYSTAAYLKVHMSCHTGE 365
++ + K H H +
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 71.7 bits (177), Expect = 5e-16
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
C + SL H+ HTG KP C IC R++S + +L H+ HTGE C +C +K
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
F + H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 51.7 bits (125), Expect = 7e-09
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
+ Y C C + + +LT H R ++ F C +C +++ R LT
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-----------IRIHTGQKPFQCRICMRNFSRSDHLT 51
Query: 301 EHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLK 338
H R H G+KP C ICG+ H H K
Sbjct: 52 TH-IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.7 bits (99), Expect = 2e-05
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
+P E C R F++ L H+ +H K +QC C + + +LT H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------- 53
Query: 273 LEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKK 311
RT ++ F CD+CG+ + R H + H +K
Sbjct: 54 --IRTHTGEKPFACDICGRKFARSDERKR-HTKIHLRQK 89
Score = 30.5 bits (70), Expect = 0.21
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 157 KCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPAN 216
C C+R F + HI H +K +QC C H+R KP
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-- 62
Query: 217 LSCEFCSRIFTKKELLRSHLAVH 239
+C+ C R F + + + H +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 76.3 bits (189), Expect = 2e-17
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
FIC CG+ + + L H+R H ++P C IC K + L +H H+ KP C
Sbjct: 18 FICKFCGRHFTKSYNLL-IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 343 EICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ CG+ + + L VH + H +S T
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 75.9 bits (188), Expect = 3e-17
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
+ + KK +C CG+ +L H THT +P+ C+IC +++ +L+ H
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
H+ E C C + F Q + +H H
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 40.9 bits (97), Expect = 5e-05
Identities = 30/132 (22%), Positives = 42/132 (31%), Gaps = 42/132 (31%)
Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHK 240
+K + C FCG R FTK L H H
Sbjct: 12 SKTKKEFICKFCG------------------------------RHFTKSYNLLIHERTHT 41
Query: 241 IGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
+ Y C C K + + +L +H + +H K EK F C CGK + + L
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDH-RYIHSK---EK-------PFKCQECGKGFCQSRTLA 90
Query: 301 EHHQREHQGKKP 312
H+ H
Sbjct: 91 V-HKTLHMQTSS 101
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 72.9 bits (180), Expect = 2e-16
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
G C ICGK+ D L H +H+G KP+ C +CG + + H+ H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 366 TS--HTCHLCPQKFRQRSSYTLHYKTHHPG 393
+ C C + F + H K H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 69.4 bits (171), Expect = 4e-15
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG--LKPH 340
C++CGK + L H+ H G+KP C +CG K ++ H+ +H G KP+
Sbjct: 8 VACEICGKIFRDVYHLN-RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 341 CCEICGRSYSTAAYLKVHM-SCHTGETS 367
C+ CG+ +S +L H+ H+G +S
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 51.0 bits (123), Expect = 1e-08
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
CE C +IF L H H K Y C C + K ++ H H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH--------DG 60
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKK 311
+ + +IC CGK + R L H ++ H G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 26.7 bits (60), Expect = 4.2
Identities = 29/151 (19%), Positives = 40/151 (26%), Gaps = 69/151 (45%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
C +C + F + L RH
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKL------------------------------------- 28
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
SH EK Y C CG F +K+ + H+ H
Sbjct: 29 SHSGEKPYSCPVCG------------------------------LRFKRKDRMSYHVRSH 58
Query: 240 --KIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
+GK Y C C K + +L HI+ VH
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 70.1 bits (172), Expect = 1e-15
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHT---GETSHTCHLCPQKFRQRSSYTLHYKTH 390
+G CEICG + A L H H C C ++F + S H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 391 HPGVIPP 397
HP ++
Sbjct: 62 HPALLLA 68
Score = 62.4 bits (152), Expect = 7e-13
Identities = 16/74 (21%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHT---GLKPHCCEICGRSYSTAAYLKVHMSCH 362
G C ICG K SL H H CE CG+ + + H S
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 363 TGETSHTCHLCPQK 376
Sbjct: 62 HPALLLAPQESSGP 75
Score = 53.2 bits (128), Expect = 2e-09
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 284 FICDVCGKSYVRKGALTEHHQREH---QGKKP-VCTICGKMLIDKRSLANHMNT-HTGLK 338
C++CG + +K +L H QR+H C CGK S+A H + H L
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 339 PHCCEICGRS 348
E G S
Sbjct: 67 LAPQESSGPS 76
Score = 48.6 bits (116), Expect = 8e-08
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
QC C T K +L H Q H ++ R F C+ CGK + + ++ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWH-QRKHAETVAALR-------FPCEFCGKRFEKPDSVAAH 57
Query: 303 HQREHQGKKPVC 314
+ H
Sbjct: 58 RSKSHPALLLAP 69
Score = 41.6 bits (98), Expect = 2e-05
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL--SCEFCSRIFTKKELLRSHLAVHKI 241
QC+ CG R K +H R KH A L CEFC + F K + + +H +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 242 GKNYQC 247
Sbjct: 64 ALLLAP 69
Score = 40.1 bits (94), Expect = 7e-05
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIG---KNYQCYYCRKTYCHKPNLTNHIQNVH 268
L CE C +K L H H + C +C K + ++ H H
Sbjct: 6 SG--LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 33.9 bits (78), Expect = 0.011
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
+C +C + K L H R KH + R C +C + F+ + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFP----CEFCGKRFEKPDSVAAHRSK 60
Query: 180 SHMHEKLYQCDFCG 193
SH L + G
Sbjct: 61 SHPALLLAPQESSG 74
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 69.1 bits (170), Expect = 3e-15
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS--HTCHLCPQKFRQRSSY 383
S + TH+G KP+ C IC ++ + +K+H+ E C C ++S
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 384 TLHYKTHHPG 393
+H + H
Sbjct: 62 GVHLRKQHSY 71
Score = 63.3 bits (155), Expect = 4e-13
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG--LKPHCCEICGRSYSTAAYLKVHM 359
R H G+KP C IC ++ H+ + C C + + L VH+
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 360 -SCHTGE 365
H+
Sbjct: 66 RKQHSYS 72
Score = 47.9 bits (115), Expect = 1e-07
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
S H K Y+CY C + + HI +F C C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QK--------HTENVAKFHCPHCDT 53
Query: 292 SYVRKGALTEHHQREHQGKKP 312
RK L H +++H P
Sbjct: 54 VIARKSDLGVHLRKQHSYSGP 74
Score = 46.4 bits (111), Expect = 4e-07
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQG--KKP-VCTICGKMLIDKRSLANHM-NTHTGLKP 339
+ C +C + + G + H + C C ++ K L H+ H+ P
Sbjct: 16 YECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Query: 340 HC 341
Sbjct: 75 SS 76
Score = 42.5 bits (101), Expect = 8e-06
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 218 SCEFCSRIFTKKELLRSHLAVH--KIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C C FT+ ++ H+ + + C +C K +L H++ H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 41.4 bits (98), Expect = 2e-05
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 355 LKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP 397
H+GE + C++C +F Q + +H H +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK 45
Score = 32.1 bits (74), Expect = 0.038
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 122 YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
YEC +C+ F + H+ KH + + C +C+ K+ + H+ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVA--KFH----CPHCDTVIARKSDLGVHLRKQH 69
Query: 182 MHEKLY 187
+
Sbjct: 70 SYSGPS 75
Score = 27.1 bits (61), Expect = 2.3
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 160 CHYCNRTFDSKAKIQEHI-ISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
C+ C+ F ++ HI + + C C + K HLR +H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 69.4 bits (171), Expect = 4e-15
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI 344
C +CGKS+ R L+ H H +P C CGK K + H HTG KPH C++
Sbjct: 4 CKICGKSFKRSSTLS-THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 345 CGRSYSTAAYLKVHMSCHTG 364
CG+++S ++ L H HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 64.4 bits (158), Expect = 2e-13
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
C ICGK +L+ H+ H+ +P+ C+ CG+ + + +K H HTGE H C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 374 PQKFRQRSSYTLHYKTH 390
+ F Q S+ H + H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 39.3 bits (93), Expect = 1e-04
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C+ C + F + L +HL +H + Y C YC K + K ++ H +H EK
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTG---EK--- 56
Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQG 309
C VCGK++ + L H R+H G
Sbjct: 57 ----PHKCQVCGKAFSQSSNLIT-HSRKHTG 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 65.2 bits (160), Expect = 8e-14
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS 360
HH KP C C K +LA+H HTG KP+ C ICG ++ A LK H
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 361 CHTGE 365
H+GE
Sbjct: 67 IHSGE 71
Score = 60.2 bits (147), Expect = 4e-12
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
+H + KP+ C+ C S+ L H + HTGE + C++C +F + ++
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 386 HYKTH 390
H + H
Sbjct: 64 HTRIH 68
Score = 51.7 bits (125), Expect = 4e-09
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
CD C S+ KG L H + H G+KP C ICG +L H H+G KP+
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 43.2 bits (103), Expect = 4e-06
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 232 LRSHLAVHKI----GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD 287
+ H H K Y+C C+ ++ +K NL +H K ++ + C+
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-----------KTVHTGEKPYRCN 49
Query: 288 VCGKSYVRKGALTEHHQREHQGKKP 312
+CG + R L H R H G+KP
Sbjct: 50 ICGAQFNRPANLKT-HTRIHSGEKP 73
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 65.0 bits (159), Expect = 2e-13
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 303 HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMS 360
+R H P C K+ L H+ THTG KP+ C E C ++ + L H
Sbjct: 12 KRRIHYCDYPGC---TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 361 CHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
HTG C +C + F + LH K H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 62.6 bits (153), Expect = 1e-12
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHT 335
+R CD C K Y + L H R H G+KP CT C L H HT
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 336 GLKPHCCEICGRSYSTAAYLKVHMSCHT 363
G KP C +C RS+S + +L +HM H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 33.4 bits (77), Expect = 0.026
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 179 SSHMHEKLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHL 236
+++ CD+ C HLR KP + E C F + + L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 237 AVHKIGKNYQCYYCRKTYCHKPNLTNHI 264
H K +QC C +++ +L H+
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 26.8 bits (60), Expect = 4.6
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 143 GKHGMKIKLSRHKTKCVCH--YCNRTFDSKAKIQEHIISSHMHEKLYQCDF--CG----- 193
G G + C C + + + ++ H+ +H EK Y+C + C
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFAR 59
Query: 194 SQQRTKCRFYYHLRDKHLS-KPANLSCEFCSRIFTKKELLRSHLAVH 239
S + T+ H R KH KP C C+R F++ + L H+ H
Sbjct: 60 SDELTR-----HYR-KHTGAKP--FQCGVCNRSFSRSDHLALHMKRH 98
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 63.3 bits (155), Expect = 5e-13
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG----LKPHCCEICGRSYSTAAYLKV 357
R H G+KP C+ C K K+ L H + C CG++++ +
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 358 HMSCHTGETSHTCHLC 373
H G
Sbjct: 66 HADNCAGPDGVEGENS 81
Score = 60.2 bits (147), Expect = 6e-12
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 284 FICDVCGKSYVRKGALTEH---HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
+ C C K++ +K L H + + VC+ CGK + ++A H + G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 340 HCCEICGRSY 349
E G S
Sbjct: 76 VEGENSGPSS 85
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS----HTCHLCPQKFRQRS 381
S + THTG KP+ C C +++ L +H + C C + F +R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 382 SYTLHYKTH 390
+ H
Sbjct: 62 TMARHADNC 70
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 355 LKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK 398
HTGE + C C + FRQ+ +H+K +H P
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPA 46
Score = 33.7 bits (78), Expect = 0.015
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 219 CEFCSRIFTKKELLRSHLAVH----KIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C C + F +K+LL H + + + C C KT+ + + H +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
Score = 32.9 bits (76), Expect = 0.029
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
K Y CS C+++F K++L H + H + C C +TF + + H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV----CSKCGKTFTRRNTMARH-AD 68
Query: 180 SHMHEKLYQCDFCG 193
+ + + G
Sbjct: 69 NCAGPDGVEGENSG 82
Score = 27.9 bits (63), Expect = 1.8
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLR----DKHLSKPANLSCEFCSRIFTKKELLRSHL 236
H EK Y C C R K H + + C C + FT++ + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--FVCSKCGKTFTRRNTMARHA 67
Query: 237 AVHKIGKNYQCYYCRKTY 254
+ +
Sbjct: 68 DNCAGPDGVEGENSGPSS 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 62.5 bits (153), Expect = 1e-12
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
C IC + L H+ THTG KP C+ICGR ++ + K H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKV 64
Query: 374 PQKFRQRSS---YTLHYKTH 390
+ + K
Sbjct: 65 EELLSKNYHLENEVARLKKL 84
Score = 53.7 bits (130), Expect = 1e-09
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
+KP C IC R++S + +L H+ HTGE C +C +KF + H H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 45.6 bits (109), Expect = 9e-07
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 43/126 (34%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
K +QC C + + +LT H RT ++ F CD+CG+ + R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-----------IRTHTGEKPFACDICGRKFARSD----- 45
Query: 303 HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC- 361
H + P + S +L+ ++
Sbjct: 46 -----------------------ERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARL 81
Query: 362 --HTGE 365
GE
Sbjct: 82 KKLVGE 87
Score = 42.9 bits (102), Expect = 7e-06
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
C C R F++ + L +H+ H K + C C + + H +++
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ----HILP-- 58
Query: 279 ILKREFICDVCGKSYVRKGALTEH--HQREHQGKK 311
+ D + + L ++ G++
Sbjct: 59 -----ILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 62.2 bits (152), Expect = 1e-12
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 306 EHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCH 362
+ CGK L H+ THTG KP+ C + CG ++ + L H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 363 TGETSHTCHLCPQKFRQRSSYTLHYKTH 390
TG C C + F + LH K H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 45.6 bits (109), Expect = 1e-06
Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 43/127 (33%)
Query: 239 HKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGA 298
C KTY ++ HLK+
Sbjct: 2 RTATHTCDYAGCGKTY---------TKSSHLKA--------------------------- 25
Query: 299 LTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL 355
H R H G+KP C CG L H HTG +P C+ C R++S + +L
Sbjct: 26 ----HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 356 KVHMSCH 362
+HM H
Sbjct: 82 ALHMKRH 88
Score = 36.4 bits (85), Expect = 0.002
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEK 275
C + +TK L++HL H K Y C C + LT H
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-----------Y 57
Query: 276 RTAILKREFICDVCGKSYVRKGALTEHHQREH 307
R R F C C +++ R L H + H
Sbjct: 58 RKHTGHRPFQCQKCDRAFSRSDHLAL-HMKRH 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 61.0 bits (149), Expect = 3e-12
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 282 REFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTG 336
CD CG+ + + L H + +H +K C CGK K+ L HM H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 337 LKPHCCEICGRSY 349
+ + CE G S
Sbjct: 66 TRDYICEFSGPSS 78
Score = 56.0 bits (136), Expect = 2e-10
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 307 HQGKKP-VCTI--CGKMLIDKRSLANHM-NTHTGLKPHCCE--ICGRSYSTAAYLKVHMS 360
G C CG++ +++ L +H H K C CG+S++ +LK HM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 361 CHTGETSHTCHLC 373
H+ + C
Sbjct: 62 LHSDTRDYICEFS 74
Score = 49.5 bits (119), Expect = 3e-08
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 334 HTGLKPHCCEI--CGRSYSTAAYLKVHM-SCHTGETSHTC--HLCPQKFRQRSSYTLHYK 388
+G C+ CGR +S YL H H + S +C C + F + H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 389 TH 390
H
Sbjct: 62 LH 63
Score = 40.6 bits (96), Expect = 5e-05
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD--VCGKSYVRKGA 298
C + C + + ++ L +H + H+ +K F C CGKS+ K
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKS-------FSCPEPACGKSFNFKKH 55
Query: 299 LTEHHQREHQGKKP-VCTICGK 319
L E H + H + +C G
Sbjct: 56 LKE-HMKLHSDTRDYICEFSGP 76
Score = 31.4 bits (72), Expect = 0.083
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 181 HMHEKLYQCDF--CGSQQRTKCRFYYHLRDKHL-SKPANLSCEFCSRIFTKKELLRSHLA 237
CDF CG + +H + +H+ K + C + F K+ L+ H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 238 VHKIGKNYQCYYCRKTY 254
+H ++Y C + +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 60.6 bits (148), Expect = 3e-12
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 305 REHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHT 363
P C+ C K +L H H +P C C + L HM
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 364 GETSHTC 370
G+ S
Sbjct: 62 GDMSGPS 68
Score = 56.4 bits (137), Expect = 1e-10
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
+ + P C C S S+ A L++H H + C+ C +Q S+ + H K H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 37.5 bits (88), Expect = 5e-04
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 237 AVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRK 296
+ G +C C + K L H +R R F C+ C +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-----------ERIHCTDRPFKCNYCSFDTKQP 50
Query: 297 GALTEHHQREHQGKKP 312
L++ H ++ G
Sbjct: 51 SNLSK-HMKKFHGDMS 65
Score = 26.3 bits (59), Expect = 4.3
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 179 SSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLS-KPANLSCEFCSRIFTKKELLRSHLA 237
SS +C C +K H R H + +P C +CS + L H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRP--FKCNYCSFDTKQPSNLSKHMK 58
Query: 238 VH 239
Sbjct: 59 KF 60
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 59.9 bits (146), Expect = 6e-12
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
CGK L H +HT P+ C E C + +S + LK H H G C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 375 QKFRQRSSYTLHYKTHH 391
+ + Y H H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 51.5 bits (124), Expect = 8e-09
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEIC 345
CGK++ + L H Q H + P C C K L H H G + C
Sbjct: 9 CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 346 GRSYSTAAYLKVHM 359
T H+
Sbjct: 68 SFVGKTWTLYLKHV 81
Score = 32.6 bits (75), Expect = 0.037
Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEK 275
E C + F K L+ H H Y+C + C K + L H + VH +K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKK 63
Query: 276 RTAILKREFICDVCGKSYVRKGALTEHHQREH 307
D C +H H
Sbjct: 64 ----------DDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 0.72
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 29/112 (25%)
Query: 157 KCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPAN 216
C C + F +++ H S H + Y+C G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEG----------------------- 38
Query: 217 LSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C + F+ L+ H VH + C H+ H
Sbjct: 39 -----CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 58.6 bits (143), Expect = 2e-11
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
H G+KP C CGK L H HTG KP+ C CG+++S + L H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 362 HTGE 365
HT
Sbjct: 65 HTSG 68
Score = 55.6 bits (135), Expect = 2e-10
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH 386
+ H+G KP+ C CG+++S ++ L H HTGE + C C + F Q S H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 387 YKTH 390
+ H
Sbjct: 62 QRIH 65
Score = 51.3 bits (124), Expect = 6e-09
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
+ C CGK++ R L +H QR H G+KP C CGK L NH HT
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 40.1 bits (95), Expect = 5e-05
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
+H K Y C C K + L H Q VH EK + C CGK
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG---EKP-------YKCLECGK 50
Query: 292 SYVRKGALTEHHQREHQGKKP 312
++ + L HQR H
Sbjct: 51 AFSQNSGLIN-HQRIHTSGPS 70
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 58.6 bits (143), Expect = 2e-11
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
+ + + ++ C CGK L+ H THTG KP+ C+ CG+++ ++L H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 362 HTGE 365
HTG
Sbjct: 69 HTGS 72
Score = 56.7 bits (138), Expect = 7e-11
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
S + + C+ CG+S+S ++ L H HTGE + C C + F QRS
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 386 HYKTH 390
H++ H
Sbjct: 65 HHRVH 69
Score = 49.4 bits (119), Expect = 3e-08
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
CD CGKS+ L++H +R H G+KP C CGK I + L H HTG P
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 39.7 bits (94), Expect = 9e-05
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 234 SHLAVHKI----GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVC 289
+ + Y+C C K++ H +L+ H + H EK + CD C
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTG---EK-------PYKCDEC 52
Query: 290 GKSYVRKGALTEHHQREHQGKKP 312
GK+++++ L H R H G P
Sbjct: 53 GKAFIQRSHLIG-HHRVHTGSGP 74
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHM--SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
T G + C++C R Y+ + H S + C C ++F ++ + T H K
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 391 HP 392
H
Sbjct: 64 HK 65
Score = 52.2 bits (126), Expect = 3e-09
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNT--HTGLKPHCCEICGRSYSTAAYLKVHMS 360
+ +G+ C +C ++ + H T +K + C C + ++ + H+
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 361 CHTG 364
Sbjct: 62 IIHK 65
Score = 42.5 bits (101), Expect = 7e-06
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQ-REHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
+ C VC + Y H+ + K C C K K ++ H+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
Y+C C + Y H N H H ++ + + C C K + RK +T
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNV---------KVYPCPFCFKEFTRKDNMTA- 58
Query: 303 HQREHQG 309
H +
Sbjct: 59 HVKIIHK 65
Score = 34.5 bits (80), Expect = 0.005
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 219 CEFCSRIFTKKELLRSHL--AVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
C+ CSR++T H + + K Y C +C K + K N+T H++ +H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.2 bits (69), Expect = 0.16
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
E Y+C C F H H C FC + FT+K+ + +H+ +
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 28.3 bits (64), Expect = 0.70
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 160 CHYCNRTFDSKAKIQEHI-ISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
C C+R + + H S + K+Y C FC + K H++ H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 26.7 bits (60), Expect = 2.4
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHI 177
Y C +C+ + + RH H +K C +C + F K + H+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVK------VYPCPFCFKEFTRKDNMTAHV 60
Score = 26.0 bits (58), Expect = 4.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGM 147
K+Y C C + F K + H++ H +
Sbjct: 39 KVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 51.3 bits (124), Expect = 3e-09
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
+ G KP+ CEICG + LK H+ HTG +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
G+KP C ICG ++L +H+ HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
GE + C +C +FR + H + H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.2 bits (69), Expect = 0.085
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C++CG + L H R H G P
Sbjct: 12 YPCEICGTRFRHLQTLKS-HLRIHTGSGP 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 53.6 bits (128), Expect = 3e-09
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 284 FICDVCGKSYVRKGALTEH-----HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLK 338
F C C +Y LT H H R+ + KRSL K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 339 PHCCEICGRSYSTAAYLKVHM 359
C CG S+ + L VHM
Sbjct: 80 VLKCMYCGHSFESLQDLSVHM 100
Score = 49.0 bits (116), Expect = 1e-07
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
+ + ++ ++C C Y LT H+ E +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN------ETGHYRDDNHETDNNNPKRW 60
Query: 292 SYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHM 331
S RK +L E +E K C CG + L+ HM
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 47.8 bits (113), Expect = 3e-07
Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 7/96 (7%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMN-----THTGLKPHCCEICGRSYSTAAYLK 356
+ G C C L HMN + S L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLH-YKTHH 391
+ C C F ++H KT H
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 42.1 bits (98), Expect = 3e-05
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
S + + TG C+ C +Y T L VHM+ TG H +R S
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPR 64
Query: 386 HYKTH 390
Sbjct: 65 KRSLL 69
Score = 37.1 bits (85), Expect = 0.002
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 350 STAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYK-THHPGVIPPK 398
S+ + K++ S TG + C C + T+H T H +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE 51
Score = 36.3 bits (83), Expect = 0.003
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRS---HLA 237
++C C + T H+ + + N + + K RS
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG 73
Query: 238 VHKIGKNYQCYYCRKTYCHKPNLTNH-IQNVHLKSELEKRTA 278
K +C YC ++ +L+ H I+ H + +
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
Score = 29.0 bits (64), Expect = 1.2
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 122 YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS-S 180
+ S K+ L + K+ C YC +F+S + H+I
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKV--------LKCMYCGHSFESLQDLSVHMIKTK 104
Query: 181 HMHEKLYQ 188
H +
Sbjct: 105 HYQKVSGP 112
Score = 27.8 bits (61), Expect = 2.5
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
+ C C+ +++ L H+ + G + + K + E
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNN--PKRWSKPRKRSLLEM-EG 73
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
+K+ +C +CG + H+
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.5 bits (121), Expect = 1e-08
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 324 KRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQ 379
+ + ++ H C CG++Y +++LK H HTGE +C C ++F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 380 RSSYTLHYKTH 390
+ H +TH
Sbjct: 62 SDELSRHRRTH 72
Score = 34.7 bits (80), Expect = 0.004
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 275 KRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLAN 329
+ + R IC CGK+Y + L H R H G+KP C+ C + L+
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKA-HTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 330 HMNTH 334
H TH
Sbjct: 68 HRRTH 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 49.7 bits (118), Expect = 2e-08
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+C CG L H+ THT ++P+ C C S+ T L HM
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 42.0 bits (98), Expect = 1e-05
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
CE CG + LK H+ HT + C C F+ + + T H K+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 38.5 bits (89), Expect = 1e-04
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
+IC+ CG + L + H R H +P CT C K +L HM + K
Sbjct: 2 YICEECGIRXKKPSMLKK-HIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 30.8 bits (69), Expect = 0.076
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQ 265
CE C K +L+ H+ H + Y C YC ++ K NLT H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.5 bits (68), Expect = 0.11
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 245 YQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQ 304
Y C C L HI RT R + C C S+ KG LT+ H
Sbjct: 2 YICEECGIRXKKPSMLKKHI-----------RTHTDVRPYHCTYCNFSFKTKGNLTK-HM 49
Query: 305 REHQGKK 311
+ K
Sbjct: 50 KSKAHSK 56
Score = 29.3 bits (65), Expect = 0.31
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 187 YQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
Y C+ CG + + H+R +P C +C+ F K L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP--YHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.4 bits (60), Expect = 1.5
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 159 VCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLR 207
+C C + +++HI +H + Y C +C +TK H++
Sbjct: 3 ICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ G KP+ CE CG + A+L+ H+ HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
G+KP C CG + L H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
GE + C C +F Q + H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 31.0 bits (71), Expect = 0.043
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CG +V+ L H H G P
Sbjct: 14 CETCGARFVQVAHLRA-HVLIHTGSGP 39
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.0 bits (118), Expect = 3e-08
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 311 KP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETS 367
+ VC +C + + L H +HT KP+ C +C R+++ L H H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 48.6 bits (117), Expect = 4e-08
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
+ CE+C R+++ +LK H HT E + C LC + F +R H + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMN-THTG 336
F+C+VC +++ R+ L H R H +KP C +C + + L H H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.2 bits (90), Expect = 2e-04
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
+++ C C + + + +L H H EK + C +C +++ R+ L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTN---EK-------PYPCGLCNRAFTRRDLLIRH 49
Query: 303 HQREHQG 309
Q+ H G
Sbjct: 50 AQKIHSG 56
Score = 34.8 bits (81), Expect = 0.003
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
CE C+R F ++E L+ H H K Y C C + + + L H Q +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 50.0 bits (119), Expect = 4e-08
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP---------VCTICGKMLIDKRSLANHM 331
+ C +++ L H EH G C GK K L NH+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 332 NTHTGLKPHCC 342
HTG K
Sbjct: 83 RVHTGEKSGPS 93
Score = 40.0 bits (93), Expect = 1e-04
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 306 EHQGKKPVCTICGKMLIDKRSLANHMN-THTGLKPHC--------CEICGRSYSTAAYLK 356
+ C + L H+ H G C G+S+ L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 357 VHMSCHTGETSHTC 370
H+ HTGE S
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 39.6 bits (92), Expect = 2e-04
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETSHTCHLCP--------QKFRQRSSY 383
+ C R++ST L H++ H G H+C + F+ +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 384 TLHYKTH 390
H + H
Sbjct: 79 VNHIRVH 85
Score = 35.3 bits (81), Expect = 0.004
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCV-CHYCNRTFDSKAKIQEHII 178
C+ +F L H+ +H + + H C ++F +K K+ H I
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-I 82
Query: 179 SSHMHEKLYQC 189
H EK
Sbjct: 83 RVHTGEKSGPS 93
Score = 34.6 bits (79), Expect = 0.010
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 22/90 (24%)
Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
C+RTF + ++ H+ H+ C +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE---------------------- 63
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQC 247
C + F K L +H+ VH K+
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 30.3 bits (68), Expect = 0.30
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 218 SCEFCSRIFTKKELLRSHL-AVHKIGKNYQCYYCRKTYCH--------KPNLTNHIQNVH 268
+ C R F+ L +H+ H G + C C K L NHI+ VH
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VH 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 47.7 bits (114), Expect = 1e-07
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 327 LANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT 384
L N++ +P+ C E C R +S + L H+ HTG+ C +C + F + T
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 385 LHYKTH 390
H +TH
Sbjct: 67 THIRTH 72
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 303 HQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM 359
+P C + C + L H+ HTG KP C IC R++S + +L H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 360 SCHT 363
HT
Sbjct: 70 RTHT 73
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP+ C CG+++ + L VH H G + +
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK I K L H TH G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.1 bits (74), Expect = 0.022
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C+ C + F +S +H +TH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 30.6 bits (70), Expect = 0.077
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK+++ K L H+R H G
Sbjct: 15 CNECGKAFIWKSLLIV-HERTHAGVSG 40
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KP C+ CG ++S + L H+ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 40.3 bits (95), Expect = 2e-05
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CG SL H+ +H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 32.6 bits (75), Expect = 0.013
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C F S H ++H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
F C CG ++ +L + H R H+ P G
Sbjct: 13 FQCKECGMNFSWSCSLFK-HLRSHERTDPSGPSSG 46
Score = 24.9 bits (55), Expect = 7.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 179 SSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSC 219
SS EK +QC CG C + HLR + P+ S
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C +CG+++ +A+L H+ HT ET
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C +CGK + L H+ HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+VCGK++V L + H R H +
Sbjct: 15 CNVCGKAFVLSAHLNQ-HLRVHTQETL 40
Score = 31.3 bits (72), Expect = 0.041
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE ++C++C + F + H + H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG+KP+ C CG+++ + +YL +H HTGE+ +
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 2e-06
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G KP VC CGK K L H THTG
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.8 bits (76), Expect = 0.012
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG + C+ C + FR +S +H +TH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.1 bits (69), Expect = 0.11
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ K L H R H G+
Sbjct: 15 CNECGKAFRSKSYLII-HTRTHTGESG 40
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+S++ + L++H CHTGE
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C+ CGK K L H HTG +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F +S +H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.4 bits (72), Expect = 0.040
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ K L HQ+ H G++
Sbjct: 15 CSDCGKSFTWKSRLRI-HQKCHTGERH 40
Score = 26.0 bits (58), Expect = 3.4
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K++ K L H Q H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ + K H C CGR ++ ++L H HTGE
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
K C CG+ K L H HTG KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S + SH CH C + F +S H + H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
C CG+ + K L + HQR H G+KP
Sbjct: 13 HQCHECGRGFTLKSHLNQ-HQRIHTGEKP 40
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K++QC+ C + + K +L H Q +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 6e-07
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICG 346
G+KP C CGK +H +H+G KP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP CE CG+ + T + H H+GE
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICG 318
F C+ CGK + HQR H G+KP G
Sbjct: 13 FKCEECGKGFYTNSQCYS-HQRSHSGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.089
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C C + F S H ++H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 25.2 bits (56), Expect = 5.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K + +H Q H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G +P+ C CG+++ ++L H+ H E S
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++P C CGK L H+ H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 31.7 bits (73), Expect = 0.027
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C+ CGK++ R L E H + H +K
Sbjct: 13 YGCNECGKNFGRHSHLIE-HLKRHFREKS 40
Score = 30.9 bits (71), Expect = 0.047
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C+ C + F + S H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 7e-07
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KP C CG+++ + L +H H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP CT CGK K L H TH K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ K L HQR H K
Sbjct: 13 CKCTECGKAFCWKSQLIM-HQRTHVDDKH 40
Score = 32.1 bits (74), Expect = 0.018
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F +S +H +TH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 27.5 bits (62), Expect = 0.77
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K +C C K +C K L H Q H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 8e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG K + C+ CG+S+S A L H H+GE
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+K C CGK L H H+G KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F + H + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 31.3 bits (72), Expect = 0.044
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ R L + H+R H G+KP
Sbjct: 15 CKECGKSFSRAPCLLK-HERLHSGEKP 40
Score = 24.8 bits (55), Expect = 9.6
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K++ P L H + +H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++P +CT+CGK D+ +L H HTG KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG +P+ C +CG++++ + L H HTGE
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.021
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+IC VCGK++ + L + HQ+ H G+KP
Sbjct: 13 YICTVCGKAFTDRSNLIK-HQKIHTGEKP 40
Score = 31.7 bits (73), Expect = 0.028
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + F RS+ H K H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 25.9 bits (58), Expect = 2.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + Y C C K + + NL H Q +H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH-QKIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ G KP+ C CG+++S+ +YL +HM H+GE
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 41.8 bits (99), Expect = 7e-06
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C+ CGK K L HM TH+G KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE + C C + F +S +H +TH
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C CGK++ K L H R H G+KP
Sbjct: 13 YGCSECGKAFSSKSYLI-IHMRTHSGEKP 40
Score = 25.2 bits (56), Expect = 5.9
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K + K L H H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C+ICG+S+ + L H HT E
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C ICGK + L H HT KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.008
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F CD+CGKS+ + L H H +KP
Sbjct: 13 FKCDICGKSFCGRSRLNR-HSMVHTAEKP 40
Score = 32.8 bits (76), Expect = 0.009
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C +C + F RS H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K++C + L H VH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG+KP+ C C +++S + L VH HTG
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G KP C+ C K K L H +HTG+KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG + C C + F +S +H ++H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 31.0 bits (71), Expect = 0.058
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C C K++ K L HQR H G KP
Sbjct: 13 YGCSQCAKTFSLKSQLIV-HQRSHTGVKP 40
Score = 26.3 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C KT+ K L H Q H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C CG+ +S + L VH HTGE
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK + +L H HTG KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F +RS+ +H+K H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 32.1 bits (74), Expect = 0.023
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C CGK + R+ AL H + H G+KP
Sbjct: 13 FKCVECGKGFSRRSALNV-HHKLHTGEKP 40
Score = 25.6 bits (57), Expect = 5.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K + + L H +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ + KP+ CE CG+ Y+ L +H H GE +
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
+KP C CGK + +L H H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C+ CGK Y R+ L HQR H G+K
Sbjct: 13 YKCEDCGKGYNRRLNLDM-HQRVHMGEKT 40
Score = 30.9 bits (71), Expect = 0.049
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S + E + C C + + +R + +H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 27.1 bits (61), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + K Y+C C K Y + NL H Q VH
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP +C CGK + +L H HT KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG++++ + L H HT +
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F RS+ H K H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.9 bits (71), Expect = 0.050
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+IC CGK++ + L + HQ+ H +KP
Sbjct: 13 YICAECGKAFTIRSNLIK-HQKIHTKQKP 40
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K + + NL H Q +H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTCHLCPQKFRQ 379
+ ++ + KP+ C+ CG+ +S +L H+ HT E H C +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHM-NTHTGLKPHCCEICGRSYSTA 352
KP +C CGK L H+ HT +PH C++ S+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 42.2 bits (100), Expect = 6e-06
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGK 319
+IC CGK + R L H ++ H ++P C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 32.2 bits (74), Expect = 0.022
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSY 293
S + +GK Y C C K + +L HI+ VH +R C V
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS----------ERPHKCQVWVSGP 51
Score = 28.7 bits (65), Expect = 0.41
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
S + + C C + F + H K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 27.2 bits (61), Expect = 1.6
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCG 193
C C + F + HI H E+ ++C
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+ P +C+ CGK+ K +L H HTG +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG P C CG+ ++ L +H HTGE
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 32.1 bits (74), Expect = 0.018
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
FIC CGK + K L HQ+ H G++P
Sbjct: 13 FICSECGKVFTHKTNLII-HQKIHTGERP 40
Score = 31.3 bits (72), Expect = 0.033
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F +++ +H K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 27.5 bits (62), Expect = 0.96
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + C C K + HK NL H Q +H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH-QKIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ ++ G + H C CG+ + A+ H HTGE
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++ C+ CGK + + H HTG KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK +++ + H+R H G+KP
Sbjct: 13 HRCSDCGKFFLQASNFIQ-HRRIHTGEKP 40
Score = 31.7 bits (73), Expect = 0.025
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE H C C + F Q S++ H + H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 26.7 bits (60), Expect = 1.9
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + ++C C K + N H + +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK K L+ H THTG KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ +G KP+ C CG+++S + L H HTGE
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C+ C + F Q+S + H +TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 30.6 bits (70), Expect = 0.067
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ +K L+ HQR H G+KP
Sbjct: 15 CNECGKTFSQKSILSA-HQRTHTGEKP 40
Score = 26.0 bits (58), Expect = 3.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C KT+ K L+ H Q H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.0 bits (102), Expect = 3e-06
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ ++ +G K H C+ CG+++ + L++H H GE
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+K C CGK +L H H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE SHTC C + F S+ +H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 31.4 bits (72), Expect = 0.036
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K++ C C K +C+ L H Q VH
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 31.0 bits (71), Expect = 0.047
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
CD CGK++ AL HQR H G+K
Sbjct: 15 CDECGKNFCYISALRI-HQRVHMGEKC 40
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK D+ +L H HTG KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG++++ + L H HTGE
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F RS+ H K H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.7 bits (73), Expect = 0.032
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C CGK++ + L HQ+ H G+KP
Sbjct: 13 YRCAECGKAFTDRSNLFT-HQKIHTGEKP 40
Score = 26.3 bits (59), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + + NL H Q +H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.3 bits (106), Expect = 3e-06
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
V + R LT Q+ I L+D+ S + + C
Sbjct: 20 IFIHVTLEELKRYHQLT-PEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP 78
Query: 344 ICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
+C +S++ LK H+ E + C +C ++F S H H
Sbjct: 79 LCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 35.3 bits (80), Expect = 0.008
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 226 FTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFI 285
+ L K + C C + +L HI+ +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-------------HTKV 102
Query: 286 CDVCGKSYVRKGALTEHHQREHQG 309
C VC K + + +H ++H
Sbjct: 103 CPVCKKEFTSTDSALDHVCKKHNI 126
Score = 30.7 bits (68), Expect = 0.35
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 119 GKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHII 178
+ C LC F + L +H+R K+ C C + F S +H+
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----------CPVCKKEFTSTDSALDHVC 121
Query: 179 SSH 181
H
Sbjct: 122 KKH 124
Score = 30.3 bits (67), Expect = 0.54
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 152 SRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
S+ ++ VC C F S +++HI E C C + + H+ KH
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHL 236
+ + C C + H+R +K C C + FT + H+
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDHV 120
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C CG+S+ L H HTGE S
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP CT CGK K +L H HTG K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C CGKS+ KG L HQR H G+K
Sbjct: 13 FECTHCGKSFRAKGNLVT-HQRIHTGEKS 40
Score = 32.1 bits (74), Expect = 0.019
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG+ C C + FR + + H + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C +C K++ K NL H Q +H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG +P+ C CG+++ T + L H HTGE
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++P C CGK K SL H +HTG KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG+ + C C + F+ +SS H ++H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 30.2 bits (69), Expect = 0.098
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ K +L H+R H G+KP
Sbjct: 15 CIECGKAFKTKSSLIC-HRRSHTGEKP 40
Score = 25.6 bits (57), Expect = 4.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + Y+C C K + K +L H + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH-RRSH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G +P C CG+ + ++L H+ H+ E S
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++P C CGK + LA H+ H+ K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.1 bits (74), Expect = 0.019
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C+ CGK + R+ L H R H +K
Sbjct: 13 FKCNECGKGFGRRSHLAG-HLRLHSREKS 40
Score = 31.0 bits (71), Expect = 0.052
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C+ C + F +RS H + H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + ++C C K + + +L H +H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG++++ + L +H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C+ CGK K L H +HTG +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.031
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F ++S +H ++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 31.3 bits (72), Expect = 0.035
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ RK L HQ+ H G++
Sbjct: 15 CSDCGKAFTRKSGLHI-HQQSHTGERH 40
Score = 24.8 bits (55), Expect = 8.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + K L H Q H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP CE CG+ ++ + L H HTGE
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK L +H HTG KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.036
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C C ++F Q S H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.3 bits (72), Expect = 0.042
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L HQR H G+KP
Sbjct: 15 CEECGKRFTQNSQLHS-HQRVHTGEKP 40
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K + L +H Q VH
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK + L H HTG K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP+ C CG+ Y L H HTGE
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK Y R+ L HQR H G+K
Sbjct: 15 CVECGKGYKRRLDLDF-HQRVHTGEKL 40
Score = 31.7 bits (73), Expect = 0.028
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C C + +++R H + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 26.0 bits (58), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K Y + +L H Q VH
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C+ C K K +L H THTG KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C C ++++T + L VH HTGE
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F +S+ +H +TH
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 30.9 bits (71), Expect = 0.054
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C C K++ K L HQR H G+KP
Sbjct: 13 FECSECQKAFNTKSNLIV-HQRTHTGEKP 40
Score = 25.9 bits (58), Expect = 3.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C+K + K NL H Q H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ G+ P+ C C +S+S L VH HT E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G P C+ C K K L H HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.039
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C C KS+ K L HQR H +KP
Sbjct: 13 YKCSQCEKSFSGKLRLLV-HQRMHTREKP 40
Score = 31.0 bits (71), Expect = 0.053
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S G + C C + F + +H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + Y+C C K++ K L H Q +H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C+ CGK I K L H HTG P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+S+ + L VH HTGE
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F ++S +H + H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 31.4 bits (72), Expect = 0.033
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+++K L HQR H G+ P
Sbjct: 15 CSDCGKSFIKKSQLHV-HQRIHTGENP 40
Score = 26.0 bits (58), Expect = 2.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K++ K L H Q +H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP+ C+ C +++ +L H HTGE S
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
GKKP C C K I L H HTG +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C C K++++ G L + H+R H G++
Sbjct: 15 CKECRKTFIQIGHLNQ-HKRVHTGERS 40
Score = 31.7 bits (73), Expect = 0.028
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +G+ + C C + F Q H + H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C CRKT+ +L H + VH
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG +PH C CG+S+ +A+L H HTGE
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G++P C CGK I L H HTG KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.055
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE H C+ C + F Q + H + H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.6 bits (70), Expect = 0.070
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGKS+++ L + HQR H G+KP
Sbjct: 15 CNECGKSFIQSAHLIQ-HQRIHTGEKP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C++C +S+ + L VH HTGE
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C +C K SL H HTG KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + FR SS T+H + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
CDVC KS+ +LT HQR H G+KP
Sbjct: 15 CDVCHKSFRYGSSLTV-HQRIHTGEKP 40
Score = 26.7 bits (60), Expect = 2.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K++ + +LT H Q +H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK I +R L H HTG KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ CE CG+ + L H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.027
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F R H+ H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 30.6 bits (70), Expect = 0.064
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK ++ + L H H G+KP
Sbjct: 15 CEECGKGFICRRDLYT-HHMVHTGEKP 40
Score = 24.8 bits (55), Expect = 7.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + + +L H VH
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG + + C CG++++ + L +H HTGE
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++ C+ CGK K +L H HTG KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.028
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F ++S+ +H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.9 bits (71), Expect = 0.054
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ RK L HQR H G+KP
Sbjct: 15 CSECGKAFARKSTLIM-HQRIHTGEKP 40
Score = 25.5 bits (57), Expect = 4.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + ++Y+C C K + K L H Q +H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH-QRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ G K C C +S A+ L++H + H GE
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+K C C SL H N H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE + C C F Q SS LH H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 31.4 bits (72), Expect = 0.033
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C C + + +L HQ H G+KP
Sbjct: 15 CRECDMCFSQASSLRL-HQNVHVGEKP 40
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C + +L H QNVH
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP +C CGK I K L H HTG KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+S+ ++L H HTGE
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.033
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q+S H + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 31.3 bits (72), Expect = 0.040
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+IC+ CGKS+++K L H+R H G+KP
Sbjct: 13 YICNECGKSFIQKSHLNR-HRRIHTGEKP 40
Score = 24.8 bits (55), Expect = 8.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K++ K +L H + +H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.2 bits (100), Expect = 5e-06
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ T K + C CG++++ +L H HT ++ +
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S T S+ C+ C + F + T H K H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 32.6 bits (75), Expect = 0.013
Identities = 9/41 (21%), Positives = 9/41 (21%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
K C CGK L H HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 28.7 bits (65), Expect = 0.36
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPVCT 315
C+ CGK++ R LT HQ+ H K +
Sbjct: 15 CNECGKAFTRIFHLTR-HQKIHTRKSGPSS 43
Score = 24.8 bits (55), Expect = 6.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K+Y C C K + +LT H Q +H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH-QKIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C C K K +L H THTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C C ++++T + L VH HTGE+ +
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F +S+ +H +TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 30.5 bits (70), Expect = 0.076
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ C K++ K L HQR H G+
Sbjct: 15 CNECQKAFNTKSNLM-VHQRTHTGESG 40
Score = 25.1 bits (56), Expect = 5.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C+K + K NL H Q H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C++C ++++ A+L H HTGE
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C +C K K LA H THTG KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + F Q++ H KTH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C VC K++ +K L + HQ+ H G+KP
Sbjct: 15 CKVCSKAFTQKAHLAQ-HQKTHTGEKP 40
Score = 25.6 bits (57), Expect = 4.4
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + K +L H Q H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C ICG+S++ + L VH HTGE
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 41.8 bits (99), Expect = 7e-06
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C+ICGK K L H HTG KP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + F ++S +H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 31.4 bits (72), Expect = 0.042
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C +CGKS+ +K L HQ+ H G+KP
Sbjct: 15 CSICGKSFTKKSQLHV-HQQIHTGEKP 40
Score = 25.2 bits (56), Expect = 5.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K++ K L H Q +H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK D L H HTG KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C CG+++S L H HTGE
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.030
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F H + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.6 bits (70), Expect = 0.076
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ L + H+R H G+KP
Sbjct: 15 CIDCGKAFSDHIGLNQ-HRRIHTGEKP 40
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+G KP C C +++S+ +YL VH H E
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C+ C K K L H TH KP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C C K++ K L HQ+ H +KP
Sbjct: 11 FGCSCCEKAFSSKSYLLV-HQQTHAEEKP 38
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C C + F +S +H +TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ +G KP CE CG+ ++ ++L H HTGE
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK L +H HTG KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C C ++F Q S H + H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 30.6 bits (70), Expect = 0.076
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C+ CGK + + L HQR H G+KP
Sbjct: 13 FQCEECGKRFTQNSHLHS-HQRVHTGEKP 40
Score = 25.2 bits (56), Expect = 6.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K +QC C K + +L +H Q VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP VC CGK L H HTG KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ +G KP+ C+ CG+++ +A L H HTGE
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.048
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
++CD CGK++ L HQR H G+KP
Sbjct: 13 YVCDYCGKAFGLSAELVR-HQRIHTGEKP 40
Score = 30.6 bits (70), Expect = 0.074
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C C + F + H + H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 24.8 bits (55), Expect = 7.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C YC K + L H Q +H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G K CT CGK K +L+ H HTG KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 9e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG K C CG++++ + L +H HTGE
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.019
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C CGK++ RK L+ HQ+ H G+KP
Sbjct: 13 FECTECGKAFTRKSTLSM-HQKIHTGEKP 40
Score = 31.7 bits (73), Expect = 0.028
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG C C + F ++S+ ++H K H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + GK+++C C K + K L+ H Q +H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 41.8 bits (99), Expect = 7e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ G KP+ C+ CG+++S L VH+ HTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 41.4 bits (98), Expect = 9e-06
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
G+KP C CGK K SL H+ HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
GE + C C + F Q+ S +H + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.2 bits (74), Expect = 0.017
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
CD CGK++ +KG+L H R H G P
Sbjct: 14 CDQCGKAFSQKGSLIV-HIRVHTGSGP 39
Score = 24.8 bits (55), Expect = 8.5
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 235 HLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
K Y+C C K + K +L H VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK + SL H HTG KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+++S + L H + HTG+
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F RSS T H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 30.6 bits (70), Expect = 0.076
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ + +LT HQ H GKKP
Sbjct: 15 CNQCGKAFSVRSSLTT-HQAIHTGKKP 40
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + + +LT H Q +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C +C K SL H H+G KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C++C +++S A L H H+GE
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.009
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + F +S T H + H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 31.7 bits (73), Expect = 0.031
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
CDVC K++ +LT+ HQR H G+KP
Sbjct: 15 CDVCRKAFSHHASLTQ-HQRVHSGEKP 40
Score = 27.5 bits (62), Expect = 0.94
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C CRK + H +LT H Q VH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 7e-06
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK + SLA H TH+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+++ + L +H + H+GE
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.016
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + FR RSS +H TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ + +L HQ H G+KP
Sbjct: 15 CNECGKAFRARSSLAI-HQATHSGEKP 40
Score = 25.2 bits (56), Expect = 5.6
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + + +L H Q H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 8e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ G KP+ C CG+S+S + L H HT E
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.1 bits (92), Expect = 8e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
+G+KP C+ CGK L H THT KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE + C C + F T H+ TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ LT+ H H +KP
Sbjct: 15 CSECGKSFSGSYRLTQ-HWITHTREKP 40
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + + K YQC C K++ LT H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ G K C C ++++ ++ L VH HTGE
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
GKK C C K SL H HTG KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S G+ C+ C + F Q SS T+H + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 30.9 bits (71), Expect = 0.050
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ C K++ + +LT HQR H G+KP
Sbjct: 15 CNECKKTFTQSSSLTV-HQRIHTGEKP 40
Score = 25.9 bits (58), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C+KT+ +LT H Q +H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ TG KP+ CE CG+ Y++ L +H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK K +L H HTG +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 31.3 bits (72), Expect = 0.041
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + + + + +H K H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK Y K L HQ+ H G++P
Sbjct: 15 CEKCGKGYNSKFNLDM-HQKVHTGERP 40
Score = 26.0 bits (58), Expect = 2.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K Y K NL H Q VH
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 41.9 bits (99), Expect = 8e-06
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 328 ANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C CG +S + L H H+G
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 38.4 bits (90), Expect = 1e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 303 HQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP CT CG L+ H +H+G+KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.7 bits (70), Expect = 0.070
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 358 HMSCHTGETSHTCH--LCPQKFRQRSSYTLHYKTH 390
S TGE C C +F + + H ++H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 26.9 bits (60), Expect = 1.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 282 REFICDV--CGKSYVRKGALTEHHQREHQGKKP 312
+ F C CG + R L+ H+R H G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELS-RHRRSHSGVKP 42
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C++CGK ++SL+ H H+G KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C +CG+++S L VH H+G+
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + F R S ++H + H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 31.7 bits (73), Expect = 0.025
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C VCGK++ + +L+ HQR H GKKP
Sbjct: 15 CSVCGKAFSHRQSLSV-HQRIHSGKKP 40
Score = 26.3 bits (59), Expect = 2.5
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + H+ +L+ H Q +H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 9e-06
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+++ + H HTG+
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK D S H HTG +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.6 bits (70), Expect = 0.071
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F SS T H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 30.2 bits (69), Expect = 0.099
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ + T+ HQR H G++P
Sbjct: 15 CMECGKAFGDNSSCTQ-HQRLHTGQRP 40
Score = 26.8 bits (60), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + + T H Q +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK LA H HTG KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 40.9 bits (97), Expect = 1e-05
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KP C CG+S+S ++ L H HTGE
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.057
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ L HQR H G+KP
Sbjct: 15 CAECGKSFSISSQLAT-HQRIHTGEKP 40
Score = 30.2 bits (69), Expect = 0.091
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + F S H + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 25.5 bits (57), Expect = 4.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K++ L H Q +H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-QRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ G K + C++CG+ +S +++L+ H HTGE
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+K C +CGK L H HTG KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.018
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
CDVCGK + + L HQR H G+KP
Sbjct: 15 CDVCGKEFSQSSHLQ-THQRVHTGEKP 40
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE + C +C ++F Q S H + H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 25.2 bits (56), Expect = 6.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + +L H Q VH
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C+ CG+S+ A+ L H H+GE
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 39.9 bits (94), Expect = 3e-05
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK L H H+G KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.035
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + FR S H + H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 29.5 bits (67), Expect = 0.18
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ L + HQR H G+KP
Sbjct: 15 CKECGKSFRWASCLLK-HQRVHSGEKP 40
Score = 24.8 bits (55), Expect = 7.6
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K++ L H Q VH
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.2 bits (97), Expect = 1e-05
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+G KP+ C C ++S L H HT ++ +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.1 bits (71), Expect = 0.048
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C C + D L H HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.4 bits (69), Expect = 0.067
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE ++C C + F + H K H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.5 bits (59), Expect = 1.9
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C C +++ L + HQ+ H K
Sbjct: 11 YSCAECKETFSDNNRLVQ-HQKMHTVKSG 38
Score = 25.7 bits (57), Expect = 3.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVH 268
K Y C C++T+ L H Q +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQH-QKMH 33
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG+KP+ C CG+++S + L H HTGE
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G KP +C CGK SL H HTG KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG + C+ C + F SS T H H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 30.6 bits (70), Expect = 0.073
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ +LT HQ H G+KP
Sbjct: 15 CNECGKAFSVYSSLTT-HQVIHTGEKP 40
Score = 26.3 bits (59), Expect = 2.0
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K + +LT H Q +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G++ C+ CGK I K +L+ H H G KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG + + C CG+++ + L +H H GE
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.021
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F Q+S+ ++H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.0 bits (71), Expect = 0.049
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++++K L+ HQR H+G+KP
Sbjct: 15 CSECGKAFIQKSTLSM-HQRIHRGEKP 40
Score = 25.9 bits (58), Expect = 3.7
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + ++Y+C C K + K L+ H Q +H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH-QRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ +G KP C+ CG+++ +L H+ HTGE
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK LA+H+ HTG KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE C C + FRQ H + H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ + L H R H G+KP
Sbjct: 15 CKECGKAFRQNIHLAS-HLRIHTGEKP 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KPH C CG+S+S + L VH HTGE
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK L H HTG P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE H C C + F S +H + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ L HQR H G+ P
Sbjct: 15 CRECGKSFSFNSQLIV-HQRIHTGENP 40
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K++ L H Q +H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG++++ A L H HTGE
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK K +L H HTG KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.024
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ C CGK++ +K LT+ HQR H G+KP
Sbjct: 13 YRCGECGKAFAQKANLTQ-HQRIHTGEKP 40
Score = 30.6 bits (70), Expect = 0.066
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F Q+++ T H + H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + K NLT H Q +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.9 bits (97), Expect = 1e-05
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG P+ C CG+ +S L H H+G++ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+ P C CGK+ K L +H TH+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK + RK L HQ+ H G+
Sbjct: 15 CCECGKVFSRKDQLVS-HQKTHSGQSG 40
Score = 30.5 bits (70), Expect = 0.068
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F ++ H KTH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 27.5 bits (62), Expect = 0.96
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + Y+C C K + K L +H Q H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH-QKTH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG P+ C CG+++S L H H GE
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+ P C CGK K L +H TH G KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + CH C + F ++ H +TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ RK L HQR H G+KP
Sbjct: 15 CHECGKAFSRKYQLIS-HQRTHAGEKP 40
Score = 25.2 bits (56), Expect = 6.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + Y+C+ C K + K L +H Q H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH-QRTH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C++CG+++ +++L H S H+GE
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C +CGK L H + H+G +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.6 bits (70), Expect = 0.082
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C VCGK++ L + H H G++P
Sbjct: 15 CQVCGKAFRVSSHLVQ-HHSVHSGERP 40
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C +C + FR S H+ H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ TG K + C CG+ +S + L H HTGE
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+K C CGK+ L+ H HTG KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.086
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + R L++ HQ+ H G+KP
Sbjct: 15 CNECGKVFSRNSQLSQ-HQKIHTGEKP 40
Score = 30.2 bits (69), Expect = 0.088
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F + S + H K H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + L+ H Q +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C+ CG+++S +L H HTGE
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK L H HTG KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.074
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ + L + HQR H G+KP
Sbjct: 15 CKECGKAFSQTTHLIQ-HQRVHTGEKP 40
Score = 30.2 bits (69), Expect = 0.097
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F Q + H + H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 24.8 bits (55), Expect = 8.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + +L H Q VH
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 1e-05
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP+ C CG+++ +L H HTG
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C+ CGK L H HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 30.5 bits (70), Expect = 0.072
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ R L E H+R H G +P
Sbjct: 15 CSECGKAFHRHTHLNE-HRRIHTGYRP 40
Score = 29.8 bits (68), Expect = 0.14
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C C + F + + H + H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G KP C CGK LA H HTG KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KP+ C CG+++S + L H HTGE
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.075
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG + C+ C + F Q S H + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 29.0 bits (66), Expect = 0.22
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ + L HQR H G+KP
Sbjct: 15 CNECGKAFSQTSKLAR-HQRVHTGEKP 40
Score = 25.2 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + GK YQC C K + L H Q VH
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.5 bits (96), Expect = 2e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ TG KP+ C CG+ + ++L H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 7e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ LA H HTG KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.024
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + CH C + FR+ S H H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 30.1 bits (69), Expect = 0.10
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK + R L HQ H G+KP
Sbjct: 15 CHECGKVFRRNSHLAR-HQLIHTGEKP 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+++ + L H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK +L H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.026
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + FR S+ T H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 30.6 bits (70), Expect = 0.064
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ LT HQ H G+KP
Sbjct: 15 CNECGKAFRAHSNLTT-HQVIHTGEKP 40
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + NLT H Q +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 40.3 bits (95), Expect = 2e-05
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
G+ P +C CGK + SLA H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 40.3 bits (95), Expect = 2e-05
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ G P+ C CG+S++ L VH +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
++C CGKS+ ++G+L HQR P
Sbjct: 12 YLCGQCGKSFTQRGSLAV-HQRSCSQSGP 39
Score = 32.3 bits (74), Expect = 0.019
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
GET + C C + F QR S +H ++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ +G KP+ C CG+ ++ ++L H HTGE
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK+ L NH HTG KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.062
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C+ C + F Q S T H++ H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + LT H R H G+KP
Sbjct: 15 CNECGKVFTQNSHLTN-HWRIHTGEKP 40
Score = 25.1 bits (56), Expect = 6.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + +LTNH +H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK I L H HTG KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
++ TG KP+ CE CG+++ + L+ H HTGE
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.030
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C C + F S H + H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.3 bits (72), Expect = 0.036
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK+++ L E HQR H G+KP
Sbjct: 15 CEECGKAFIHDSQLQE-HQRIHTGEKP 40
Score = 26.3 bits (59), Expect = 2.1
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y C C K + H L H Q +H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ +G P+ C CG++++ L H H GE+ +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+ P C+ CGK K L +H TH G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.3 bits (72), Expect = 0.031
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++ RK L HQR H G+
Sbjct: 13 CSECGKAFNRKDQLIS-HQRTHAGESG 38
Score = 29.4 bits (67), Expect = 0.16
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +GE + C C + F ++ H +TH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK LA H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+++S + L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.067
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q S H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK++ + L HQR H G+KP
Sbjct: 15 CNECGKAFSQTSKLAR-HQRIHTGEKP 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 303 HQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
Q+ H G + C+ CG + +T + K CE C + A L
Sbjct: 9 RQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 362 HTGETSH 368
+G+ +
Sbjct: 62 ESGKKTS 68
Score = 40.8 bits (95), Expect = 3e-05
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
S H G + C CG + S + + C C + Q ++
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 386 HYKTH 390
Sbjct: 58 DEGNE 62
Score = 33.5 bits (76), Expect = 0.014
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
+H ++ +C C + + L+ + +C+ C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR------------------KTPMCEKCRK 47
Query: 292 SYVRKGALTEHHQREHQGKKP 312
++ AL + + GKK
Sbjct: 48 DSCQEAALNK-DEGNESGKKT 67
Score = 28.1 bits (62), Expect = 0.99
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 351 TAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH 386
++ H G+ S C C F +RS+ +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 25.8 bits (56), Expect = 8.4
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNH 263
C C IF ++ L K C CRK C + L
Sbjct: 21 CSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP C CG+SY+ +L H HTGE
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
G+KP C CGK + L H HTG KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.044
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C CGKSY ++ LT+ HQR H G+KP
Sbjct: 13 FKCGECGKSYNQRVHLTQ-HQRVHTGEKP 40
Score = 31.0 bits (71), Expect = 0.045
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE C C + + QR T H + H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 25.2 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K ++C C K+Y + +LT H Q VH
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ LA H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+ ++ ++L H HTG
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 30.6 bits (70), Expect = 0.081
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q S H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L H+R H G KP
Sbjct: 15 CNECGKVFTQNSHLAR-HRRVHTGGKP 40
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
+ ++ TG KP+ C CG+ + +YL H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ L+ H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.038
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + FR S + H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 30.6 bits (70), Expect = 0.071
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + L+ HQR H G+KP
Sbjct: 15 CNECGKVFRHNSYLSR-HQRIHTGEKP 40
Score = 27.9 bits (63), Expect = 0.62
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + H L+ H Q +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 39.9 bits (94), Expect = 4e-05
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHM-NTHTGLKPHCC 342
GKKP C CGK I SL H HTG KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.5 bits (93), Expect = 6e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTC 370
+ ++ TG KP+ C CG+++ L H HTGE
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 31.8 bits (73), Expect = 0.027
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
S TG+ + C C + F Q +S H++ +H G
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 29.5 bits (67), Expect = 0.18
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGK++++ +L H + H G+KP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 234 SHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
S + K Y+C C K + +L H + H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 25.6 bits (57), Expect = 4.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKH 145
K YEC C ++F L RH R H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 39.5 bits (92), Expect = 4e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
+ K CEICG+ + +L H H+GE ++
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.1 bits (83), Expect = 0.001
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC 345
+ +K C ICGK+ D L H +H+G KP+
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.14
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
+++ C++CGK + L H+ H G+KP
Sbjct: 10 RKQVACEICGKIFRDVYHLNR-HKLSHSGEKP 40
Score = 26.4 bits (58), Expect = 2.1
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 146 GMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFC 192
G R + + C C + F + H + SH EK Y
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 2.5
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYC 250
++CE C +IF L H H K Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.4 bits (96), Expect = 5e-05
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
++Y+C LCN + H R + VC YC+ F S QEH
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERL----------CRNAAVCPYCSLRFFSPELKQEH--E 62
Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
S K C C ++ + H + H
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 41.0 bits (95), Expect = 6e-05
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
+++YQC C ++ + H R C +CS F EL + H + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCR----NAAVCPYCSLRFFSPELKQEHES-KCEYK 68
Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVH 268
C C +T+ ++ H VH
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.5 bits (78), Expect = 0.011
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 301 EHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS 360
+ C +C L +H C C + + + H S
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHES 63
Query: 361 CHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
TC C + F+ S H H
Sbjct: 64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 32.6 bits (73), Expect = 0.059
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSC 219
C CN S + H + C +C + + H K K L+C
Sbjct: 19 CRLCNAKLSSLLEQGSHE---RLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYK--KLTC 72
Query: 220 EFCSRIFTKKELLRSH 235
C R F + H
Sbjct: 73 LECMRTFKSSFSIWRH 88
Score = 32.6 bits (73), Expect = 0.063
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
+ YQC C +H + +C C + L +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR-------------NAAVCPYCSLRFFSP-ELKQE 60
Query: 303 HQREHQGKKPVCTICGKMLIDKRSLANH 330
H+ + + KK C C + S+ H
Sbjct: 61 HESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 29.1 bits (64), Expect = 0.98
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 14/100 (14%)
Query: 209 KHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
+ C C+ + SH + + C YC + H
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEH----- 61
Query: 269 LKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQ 308
+ ++ C C +++ ++ H H
Sbjct: 62 -------ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ LANH HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
++ TG KP+ C CG+ ++ ++L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.6 bits (70), Expect = 0.069
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q S H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L HQR H G KP
Sbjct: 15 CNECGKVFTQNSHLAN-HQRIHTGVKP 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.9 bits (95), Expect = 7e-05
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
+ K+ Y+C YC T H+ + H L ++C C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS-------SYVCVECNF 58
Query: 292 SYVRKGALTEHHQREHQG 309
R AL+EH+ + H G
Sbjct: 59 LTKRYDALSEHNLKYHPG 76
Score = 35.5 bits (81), Expect = 0.005
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTG---ETSHTCHLCPQKFRQRSSYTL 385
+ + C+ C H+ S H +S+ C C ++ + +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 386 HYKTHHPGVIPPKLR 400
H +HPG KL
Sbjct: 69 HNLKYHPGEENFKLT 83
Score = 30.5 bits (68), Expect = 0.29
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 109 YIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFD 168
+ H + K YEC C + + H+ +H + S + VC CN
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSY----VCVECNFLTK 61
Query: 169 SKAKIQEHIISSHMHEKLYQCD 190
+ EH + H E+ ++
Sbjct: 62 RYDALSEHNLKYHPGEENFKLT 83
Score = 30.1 bits (67), Expect = 0.35
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 160 CHYCNRTFDSKAKIQEHIISSHMH---EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
C YC H+ S H + Y C C + H H +
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Score = 28.6 bits (63), Expect = 1.1
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 175 EHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLS--CEFCSRIFTKKELL 232
H + E Y+C +C Q F +H+ +H + N S C C+ + + + L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 233 RSHLAVH 239
H +
Sbjct: 67 SEHNLKY 73
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ L H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 9e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+ ++ ++L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.082
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q S H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L H+ H G+KP
Sbjct: 15 CNECGKVFTQNSHLVR-HRGIHTGEKP 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+ ++ ++L H HTGE
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
GKKP C CGK+ LA H HTG KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.035
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TG+ + C+ C + F Q S H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.6 bits (65), Expect = 0.34
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L H+ H G+KP
Sbjct: 15 CNECGKVFTQNSHLAR-HRGIHTGEKP 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
+ ++ TG KP+ C CG+ ++ ++L H HTGE
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
G+KP C CGK+ LA H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.072
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S TGE + C+ C + F Q S H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C+ CGK + + L H+ H G+KP
Sbjct: 15 CNECGKVFTQNSHLAR-HRGIHTGEKP 40
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 38.1 bits (89), Expect = 1e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
TG+KP C C RS+S + +L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.075
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
TG C C + F + LH K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.5 bits (59), Expect = 1.5
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTH 334
R G KP C C + LA H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 50/374 (13%), Positives = 99/374 (26%), Gaps = 129/374 (34%)
Query: 16 NIDVIAYG-----------SVCRDVKLHDLP-----------CSVSDEVVLFSNGLFLFV 53
+V+ G VC K+ C+ + V+ L +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 54 FSFRSENKQIIGDLKVENTVYRIKSKDLLASFS--------SDVWDEE-------RCRSC 98
+ ++K+ + + + LL S +V + + C+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 99 GLL---SGSIT-----QTYIH---------------------YLECKN--------RGKL 121
LL +T T H YL+C+
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 122 YECSLCNESFENKKVL---FRHLRG-KHGMKIKLS---------RHKTKCVCHYCNRT-F 167
S+ ES + ++H+ K I+ S R + + F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVF 381
Query: 168 DSKAKIQEHIISSHMHEKLYQC-----DFCGSQ---QRTKCRFYYHLRDKHLSKPANLSC 219
A I ++S + + + ++ + +L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------- 434
Query: 220 EFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCH----KPNLTNHIQNV---HLKS- 271
K L + A+H+ Y KT+ P L + + HLK+
Sbjct: 435 --------LKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 272 ELEKRTAILKREFI 285
E +R + + F+
Sbjct: 485 EHPERMTLFRMVFL 498
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.4 bits (84), Expect = 6e-04
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
+ ++ G P C C R ++ YL H H ++ +
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 30.2 bits (68), Expect = 0.088
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 303 HQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPH 340
G+ P C+ C ++ + L H TH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 30.2 bits (68), Expect = 0.094
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S GE C C + F QR+ H +TH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 28.7 bits (64), Expect = 0.36
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
F C C + + ++ L + H+R H K
Sbjct: 13 FKCSKCDRVFTQRNYLVQ-HERTHARKSG 40
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ +G + + C+ CG+S+ L +H HTG
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 34.1 bits (79), Expect = 0.004
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP 312
C CGKS+ +KG+LT H+R H G P
Sbjct: 13 CQECGKSFRQKGSLTL-HERIHTGSGP 38
Score = 32.5 bits (75), Expect = 0.014
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S +G+ + C C + FRQ+ S TLH + H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 31.4 bits (72), Expect = 0.038
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
G++ C CGK K SL H HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVH 268
+ Y+C C K++ K +LT H + +H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH-ERIH 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.2 bits (93), Expect = 0.001
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 296 KGALTEHHQREHQGKKPV-------CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRS 348
L+ +++G ++ + T + + C +C
Sbjct: 130 ANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAV 189
Query: 349 YSTAAYLKVHMSCHTGETS 367
+ L H++ H +
Sbjct: 190 LFSPLDLDAHVASHGLHGN 208
Score = 38.7 bits (89), Expect = 0.004
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 283 EFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTH 334
I + + A G C +C +L L H+ +H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.4 bits (78), Expect = 0.068
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
E S + + CH+C H +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 33.3 bits (75), Expect = 0.17
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 212 SKPANLSCEFCSRIFTKKELLRSHLAVHKIGKN 244
S C CS + L +H+A H + N
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 31.7 bits (71), Expect = 0.52
Identities = 8/38 (21%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 270 KSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREH 307
TA + C VC L H H
Sbjct: 167 ARVGLPPTASSGHGYQCHVCSAVLFSPLDLDA-HVASH 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 57/177 (32%)
Query: 79 KDLLASFSS--DVWDE-ERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKK 135
DL + + DVW+ + H+ + Y S+ + N
Sbjct: 1633 MDLYKTSKAAQDVWNRADN----------------HFKDT------YGFSILDIVINNPV 1670
Query: 136 VLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSK--AKIQEHIISSHMHEKLYQCDFCG 193
L H G+ G +I R Y F++ K++ I ++E F
Sbjct: 1671 NLTIHFGGEKGKRI---REN------YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 194 SQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSH--------LAVHKIG 242
+ L ++PA E F E L+S A H +G
Sbjct: 1722 EKGL--------LSATQFTQPALTLMEKA--AF---EDLKSKGLIPADATFAGHSLG 1765
Score = 36.6 bits (84), Expect = 0.016
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 6 CAQTNEAGVMNIDVIAY--GSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQI 63
+E G N +IA G V L V E V G + + ++ EN+Q
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTGWLVEIVNYNVENQQY 1853
Query: 64 I--GDLK-VE--------NTVYRIKSKDLLASFSSD 88
+ GDL+ ++ + +I +L S S +
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 338 KPHCCEI--CGRSYSTAAYLKVHMSCHTGE 365
K H C I CG+ Y ++L+ H+ HTGE
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.2 bits (77), Expect = 0.014
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 342 CEICGR-SYSTAAYLKVHM-SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK 398
C C + T LK HM C + + C C ++F+ ++ H H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA 85
Score = 30.3 bits (67), Expect = 0.27
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 153 RHKTKCVCHYCNR-TFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHL 211
+ + VC CN T + +++H+ + +C C Q ++K YH +H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 212 SKPA 215
+KP+
Sbjct: 80 AKPS 83
Score = 28.4 bits (62), Expect = 1.3
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 209 KHLSKPANLSCEFCSRIFTKK-ELLRSHLAV-HKIGKNYQCYYCRKTYCHKPNLTNHIQN 266
+ + + C C+ + K L+ H+ V K+ +C +CRK + K L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 267 VH 268
H
Sbjct: 77 EH 78
Score = 27.2 bits (59), Expect = 4.1
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 95 CRSCGLLSGSITQTYI-HYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMK 148
C +C +++ H C+ +C C + F++K L H +H K
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.8 bits (79), Expect = 0.062
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 133 NKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
N + MK+ + + VC+ CN F + + + EH+ S H
Sbjct: 92 NATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 32.1 bits (72), Expect = 0.36
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 284 FICDVCGKSYVRKGALTEHHQREH 307
++C+VC + AL+EH + +H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.7 bits (71), Expect = 0.52
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 367 SHTCHLCPQKFRQRSSYTLHYKTHH 391
S+ C++C +F S+ + H ++ H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDH 140
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 32.2 bits (72), Expect = 0.089
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 150 KLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEK---LYQCDFCGSQQRTKCRFYYHL 206
+ S + C C+ S+++ H S H Y G +F
Sbjct: 25 ENSHIFSDTQCKVCSAVLISESQKLAHY-QSRKHANKVRRYMAINQGEDSVPAKKFKAAP 83
Query: 207 RDKHLSKPANLSCEFCSRIFTKKELLRSHLA 237
+ + + C C+ F+ + SH
Sbjct: 84 AEISDGEDRSKCCPVCNMTFSSPVVAESHYI 114
Score = 28.0 bits (61), Expect = 2.6
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 205 HLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHI 264
L ++ ++ C+ CS + + +H K + Y + +
Sbjct: 21 SLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKV------RRYMAINQGEDSV 74
Query: 265 QNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQ-REHQGK 310
K+ + + R C VC ++ H+ + H
Sbjct: 75 PAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
Score = 26.8 bits (58), Expect = 7.9
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 25/81 (30%)
Query: 124 CSLCNESFENKKVLFRHLRGK-HGMKIKLSRHKTKCV----------------------- 159
C +C+ ++ H + + H K++ +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 160 -CHYCNRTFDSKAKIQEHIIS 179
C CN TF S + H I
Sbjct: 95 CCPVCNMTFSSPVVAESHYIG 115
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.099
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+ CE+C R+++ +LK H HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.9 bits (66), Expect = 0.12
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV 394
S +GE ++C +C +F+++ + H ++H V
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 26.4 bits (57), Expect = 2.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHG 146
K Y C +C F+ K + H+R G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 6.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 179 SSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
S EK Y C CG + + K R YH+R
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 31.5 bits (71), Expect = 0.17
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 154 HKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSK 213
+ C +C+R F S + H H Q + + FY +++ + +
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEH------QFNIDSMVHKHGLEFYGYIKLINFIR 65
Query: 214 PANLSCEFCSRIFTKKEL 231
N + E+ + I+
Sbjct: 66 LKNPTVEYMNSIYNPVPW 83
Score = 26.9 bits (59), Expect = 6.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 124 CSLCNESFENKKVLFRHLRGKHG 146
C C+ F + + F H + +H
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQ 40
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.33
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 268 HLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQR-EHQGKKPVCTICGKML----I 322
+ +R L C C + E + VC +CG +L +
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKV---YPPKIVERFSEGDV-----VCALCGLVLSDKLV 57
Query: 323 DKRS 326
D RS
Sbjct: 58 DTRS 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.2 bits (70), Expect = 0.35
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 149 IKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRD 208
I S C N ++ + + +C G + + R +
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 209 KHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQN 266
+ C C R F K + H+ + C C + + + H QN
Sbjct: 105 HCEFAL--MDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQN 158
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 27.8 bits (61), Expect = 0.47
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
+KP+ C C R ++ L+ H+ HTGE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.8 bits (61), Expect = 0.47
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP C +CG++++ A+ L H+ HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 24.7 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 310 KKPVCTICGKMLIDKRSLANHMNTHTGLK 338
K C +CGK SL H+ HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.1 bits (62), Expect = 0.78
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 127 CNESFENKKVLFRHLRGKH-GMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
C ES + L RHL H K C C+ D A I HI + H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 27.7 bits (61), Expect = 1.3
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 163 CNRTFDSKAKIQEHIISSHMHEKLYQCDF--------CGSQQRTKCRFYYHLRDKH 210
C + S +Q H++ H+ + C H+ +H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.97
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 342 CEICGR-SYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK 398
C C T LK HM + + TCH C ++ R + H +H +
Sbjct: 37 CPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
Score = 27.9 bits (61), Expect = 2.0
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 155 KTKCVCHYCNR-TFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSK 213
K C C + +++H+ + ++++ C CG Q R+ YH+ H S
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHM--ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 214 P 214
P
Sbjct: 90 P 90
Score = 27.9 bits (61), Expect = 2.1
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 209 KHLSKPANLSCEFCSRIFTKK-ELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNV 267
+ ++SC C + K E L+ H+ K + C++C K + H+
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMAN 85
Query: 268 H 268
H
Sbjct: 86 H 86
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 212 SKPANLSCEFCSRIFTKKELLRSHLAVH 239
S +CE+C+++F K L++HL +H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 1.3
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 284 FICDVCGKSYVRKGALTEHHQREHQG 309
+ C +C +++ R+ L H Q+ H G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 120 KLYECSLCNESFENKKVLFRHLRGKHG 146
K Y C LCN +F + +L RH + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
KP+ C C + + A L VH+ HTGE
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 28.1 bits (62), Expect = 1.6
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 227 TKKELLRSHLAVHKIGKNYQCYYCRKTY---CHKPNLTNHIQNVHLKSELE 274
K S L +K + QC C +T+ + H + H K+++
Sbjct: 28 AKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVV 78
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 183 HEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCE 220
+K Y CD CG + + + YH HL++ E
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKE 41
Score = 26.7 bits (58), Expect = 2.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
K Y C C K Y ++P L+ H + HL E
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEE 35
Score = 26.7 bits (58), Expect = 2.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP 312
+ + CD+CGK Y + L+ H+ H ++
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEE 36
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMS 360
KP+ C+ICG+ Y L H +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 214 PANLSCEFCSRIFTKKELLRSHLAVHK 240
P + +C FC R F + L H+ VH+
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHR 30
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.3 bits (57), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHT 363
+G +P C IC +++T A H+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 2.5
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 115 CKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQ 174
C N GKL + S R+ K+ + + KTK VC
Sbjct: 109 CWNCGKLK----IDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGL-------SAG 157
Query: 175 EHIISSHMHEKLYQCDFCGSQQRT 198
CG+ Q T
Sbjct: 158 SDNFDLSNPSANMGHGGCGAAQPT 181
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 27.1 bits (60), Expect = 2.8
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 15/52 (28%)
Query: 104 SITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHK 155
S+ +I LEC G + K L RHL H M + R K
Sbjct: 16 SVQDDHIVCLEC---GGSF------------KSLKRHLTTHHSMTPEEYREK 52
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 3.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTG 364
++P+ C +CG+ +S ++ H HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 28.2 bits (63), Expect = 3.4
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 149 IKLSRHKTKCVCHYCNRTFDSKAKIQEHIISS 180
L+ K C YC D +I I+ +
Sbjct: 135 KTLTEKPLKMRCEYCETIIDEN-EIMSQILGA 165
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.5 bits (55), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 365 ETSHTCHLCPQKFRQRSSYTLHYKTH 390
E +C LCPQ+ R S+ T H +TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
K H C++CG+ + + LK H HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 28.3 bits (64), Expect = 4.1
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 271 SELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLI 322
EL KR + R +IC CG +Y H + +C G L
Sbjct: 118 EELMKR--LTGR-WICKTCGATY---------HTIFNPPAVEGICDKDGGELY 158
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 4.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 342 CEICGRSYSTAAYLKVHMSCHTGET 366
C+ CG+ + ++ L H + H GE+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGES 39
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.5 bits (55), Expect = 4.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
S + E SH C C + F Q S H H
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 25.5 bits (55), Expect = 5.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
K H C CG + L H H G+ +
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 5.0
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
E + H + + K Q + + +L I L+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.9 bits (61), Expect = 5.4
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 52 FVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVW-DEERCRSCGLLSGSITQTYI 110
+V R E +Q + + +Y +D+ VW E+ + +S +
Sbjct: 143 YVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNL 202
Query: 111 HYLECKNRGKLYECSLCNESFENKKVLFRHLR 142
E + + + +N + L +
Sbjct: 203 ARGEKR-----LQREKSEQVLDNPEDLRGPIH 229
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (55), Expect = 5.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHT 363
+ K C C +++S + YL H HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.8 bits (53), Expect = 8.1
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 119 GKLYECSLCNESFENKKVLFRHLRGKH 145
G+ Y C +C +SF +++ H++ H
Sbjct: 7 GRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 24.5 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 338 KPHCC--EICGRSYSTAAYLKVHMSCHTGE 365
+P C CG+ ++ + L+ H HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 27.4 bits (61), Expect = 9.6
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRS 326
C+VCG+ P C ICG+ + + S
Sbjct: 156 CEVCGRPL-----------TPEILINPRCAICGRPISFRDS 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.438
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,018,636
Number of extensions: 345396
Number of successful extensions: 3298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2564
Number of HSP's successfully gapped: 966
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.7 bits)