BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4577
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 198/217 (91%), Positives = 215/217 (99%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 78/79 (98%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
VQWSPHNETILASSGTDRRL+VWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPWVICSVSEDNIMQ+
Sbjct: 383 NPNEPWVICSVSEDNIMQV 401
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W+P+ L S+ D + +WD+S + +E DA+ I GHTA + D SW
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVEDVSW 235
Query: 61 NPNEPWVICSVSEDNIMQI 79
+ + SV++D + I
Sbjct: 236 HLLHESLFGSVADDQKLMI 254
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
H EVN + P + ++AT + V ++D K H H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LH---SFESHKDEIFQ 322
Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
+ W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + ++ P N ++A+ + V+D +K P+ + P+L
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
GH + SWNP+ + S S+D+ + +W +
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVNCLSF 281
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 282 NPYSEFILATGSADKTVAL 300
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
N P + H E LS+NP L + S D T+ LWD+
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 21 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 81 EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 140
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 141 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 200
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 201 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 388
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPW+ICSVSEDNIMQ+
Sbjct: 389 NPNEPWIICSVSEDNIMQV 407
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
H EVN + P + ++AT + V ++D K H+ E +
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------SFESHKDEIFQ 328
Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
+ W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W+P+ L S+ D + +WD++ +E DA++ I GHTA + D +W
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN-------IFTGHTAVVEDVAW 241
Query: 61 NPNEPWVICSVSEDNIMQI 79
+ + SV++D + I
Sbjct: 242 HLLHESLFGSVADDQKLMI 260
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + ++ P N ++A+ + V+D +K + + P+L
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
GH + SWNP+ + S S+D+ + +W +
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
N P + H E LS+NP L + S D T+ LWD+
Sbjct: 266 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAEVNCLSF 287
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 288 NPYSEFILATGSADKTVAL 306
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 79 EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 138
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 139 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPW+ICSVSEDNIMQ+
Sbjct: 387 NPNEPWIICSVSEDNIMQV 405
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
H EVN + P + ++AT + V ++D K H+ E +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------SFESHKDEIFQ 326
Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
+ W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W+P+ L S+ D + +WD++ +E DA++ I GHTA + D +W
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN-------IFTGHTAVVEDVAW 239
Query: 61 NPNEPWVICSVSEDNIMQI 79
+ + SV++D + I
Sbjct: 240 HLLHESLFGSVADDQKLMI 258
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + ++ P N ++A+ + V+D +K + + P+L
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
GH + SWNP+ + S S+D+ + +W +
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
N P + H E LS+NP L + S D T+ LWD+
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAEVNCLSF 285
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 286 NPYSEFILATGSADKTVAL 304
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 23 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 83 EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 142
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 143 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 202
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 203 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 390
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPW+ICSVSEDNIMQ+
Sbjct: 391 NPNEPWIICSVSEDNIMQV 409
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
H EVN + P + ++AT + V ++D K H+ E +
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------SFESHKDEIFQ 330
Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
+ W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W+P+ L S+ D + +WD++ +E DA++ I GHTA + D +W
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN-------IFTGHTAVVEDVAW 243
Query: 61 NPNEPWVICSVSEDNIMQI 79
+ + SV++D + I
Sbjct: 244 HLLHESLFGSVADDQKLMI 262
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + ++ P N ++A+ + V+D +K + + P+L
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
GH + SWNP+ + S S+D+ + +W +
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + + HTA+++ S+
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAEVNCLSF 289
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 290 NPYSEFILATGSADKTVAL 308
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
N P + H E LS+NP L + S D T+ LWD+
Sbjct: 268 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 180/217 (82%), Positives = 206/217 (94%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKDY++H L+LGTHTSD
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE EIKINHEGEVNRARYMP
Sbjct: 77 EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMP 136
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQKEGYGLSWN +L+G+LL
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL 196
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHT+CLWDINA PKE +++DAK IFTGH+AVVE
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 77/79 (97%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V WSPHNETILASSGTDRRL+VWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPWVICSVSEDNIMQI
Sbjct: 385 NPNEPWVICSVSEDNIMQI 403
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 26/120 (21%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-----GHQ 297
H EVN + P + ++AT + V ++D +L+L+ H+
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHTFESHK 319
Query: 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
E + + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + + P N ++A+ + V+D +K + + P+L
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
GH + SWNP+ + S S+D+ + +W +
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + P L+ HTA+++ S+
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWD--------TRSNTTSKPSHLV---DAHTAEVNCLSF 283
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 284 NPYSEFILATGSADKTVAL 302
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 178/217 (82%), Positives = 204/217 (94%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
RVINEEYKIWKKNTPFLYDLV THAL+WPSLT QWLP+VT+PEGKDY++H L+LGTHTSD
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
EQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE EIKINHEGEVNRARY P
Sbjct: 77 EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYXP 136
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
QNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQKEGYGLSWN +L+G+LL
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL 196
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
SASDDHT+CLWDINA PKE +++DAK IFTGH+AVVE
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 76/79 (96%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V WSPHNETILASSGTDRRL+VWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDFSW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 61 NPNEPWVICSVSEDNIMQI 79
NPNEPWVICSVSEDNI QI
Sbjct: 385 NPNEPWVICSVSEDNIXQI 403
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 26/120 (21%)
Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-----GHQ 297
H EVN + P + ++AT + V ++D +L+L+ H+
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHTFESHK 319
Query: 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVV 350
E + + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V W +E++ S D++L +WD + + P L+ HTA+++ S+
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWD--------TRSNTTSKPSHLV---DAHTAEVNCLSF 283
Query: 61 NPNEPWVICSVSEDNIMQI 79
NP +++ + S D + +
Sbjct: 284 NPYSEFILATGSADKTVAL 302
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPDPNGECHPDL 291
K+++ +H+ E+ + + P N ++A+ + V+D +K + + P+L
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 292 RL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325
GH + SWNP+ + S S+D+ +W
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W PHN+ ++AS D + VW++ G E + GHT ++ +W
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------EPVITLEGHTKRVGIVAW 139
Query: 61 NPNEPWVICSVSEDNIMQILSV 82
+P V+ S DN++ + V
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV 161
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 232 SGKIEIEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-- 287
+G+++ + + H V + P N VIA+ + V+V++ P+G
Sbjct: 67 TGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI--------PDGGLVL 118
Query: 288 ---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
P + L GH K ++W+P+ LLSA D+ I +WD+
Sbjct: 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 50 GHTAKISDFSWNPNEPWVICSVSEDNIMQI 79
GHTA + D +W P+ VI S SED + +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMV 108
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
+ W PHN+ ++AS D + VW++ G E + GHT ++ +W
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------EPVITLEGHTKRVGIVAW 139
Query: 61 NPNEPWVICSVSEDNIMQILSV 82
+P V+ S DN++ + V
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV 161
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 232 SGKIE--IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-- 287
+G+++ + + H V + P N VIA+ + V+V++ P+G
Sbjct: 67 TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI--------PDGGLVL 118
Query: 288 ---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
P + L GH K ++W+P+ LLSA D+ I +WD+
Sbjct: 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 50 GHTAKISDFSWNPNEPWVICSVSEDNIMQI 79
GHTA + D +W P+ VI S SED + +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDF 58
V WSP + ILA++ D R+ +WD+ + T D +G + H K++
Sbjct: 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251
Query: 59 SWNPNEPWVICSVSEDNIMQI 79
+ + ++ +V DN M++
Sbjct: 252 CFTSDGLHLL-TVGTDNRMRL 271
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 258 CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317
C++A T V + D +G C L+GH++E +SW+P + L +AS
Sbjct: 157 CLVAVGTRGPKVQLCDL--------KSGSCSH--ILQGHRQEILAVSWSPRYDYILATAS 206
Query: 318 DDHTICLWDI 327
D + LWD+
Sbjct: 207 ADSRVKLWDV 216
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKI 28
VQW PH+ + SS D+ L VWD + +
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTL 132
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 285 GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344
G HPD+ H+ + W P G S+S D T+ +WD N + +T+++
Sbjct: 91 GRDHPDV----HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS 146
Query: 345 GHTAVV 350
H + V
Sbjct: 147 HHMSPV 152
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY 301
NH V ++ + V+A+ + ++ ++D K P P + E
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVI 169
Query: 302 GLSWNPSLNGYLLSASDDHTICLWDINA 329
L+WN SL SA + +WD+ A
Sbjct: 170 SLAWNQSLAHVFASAGSSNFASIWDLKA 197
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 246 EVNRARYMPQNPCVIATKTPSSD---VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
+++ + P+N +AT T S + +L++D N +GHQK
Sbjct: 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLR--------NANTPLQTLNQGHQKGILS 267
Query: 303 LSWNPSLNGYLLSASDDHTICLWD 326
L W LLS+ D+T+ LW+
Sbjct: 268 LDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
GHQ+ ++W+P N YL SAS D T C+W N
Sbjct: 59 GHQRTVRKVAWSPCGN-YLASASFDATTCIWKKN 91
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL 303
EG R + +PC + S D + K+ + EC L GH+ E +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----DFECV--TTLEGHENEVKSV 111
Query: 304 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
+W PS N L + S D ++ +W+++ E + ++ HT V+
Sbjct: 112 AWAPSGN-LLATCSRDKSVWVWEVD----EEDEYECVSVLNSHTQDVK 154
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 35 EDAEDGPPELLF-----IHGGHTAKISDFSWNPNEPWVICSVSEDN 75
ED P + F +H H+ ++ +WNP EP ++ S S+D
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 70/371 (18%), Positives = 131/371 (35%), Gaps = 107/371 (28%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V +SP +TI AS+ D+ + +W+ + +LL GH++ + ++
Sbjct: 63 VAFSPDGQTI-ASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVRGVAF 106
Query: 61 NPNEPWVICSVSED----------NIMQILSV-------VCVEPFDDAVEERVINEEYKI 103
+P+ I S S+D ++Q L+ V P + ++ K+
Sbjct: 107 SPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 104 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA 159
W +N L L + W + PD + ++ K+W +N L L H+
Sbjct: 166 WNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-HS 221
Query: 160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 219
+ G +S + + + D+ +V+L N + Q
Sbjct: 222 --------------SSVRGVAFSPDGQTIASASDDK-------TVKLWNRNGQL------ 254
Query: 220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS 279
++ H VN + P + + S D V + +
Sbjct: 255 -----------------LQTLTGHSSSVNGVAFRPDGQTIAS---ASDDKTVKLWNR--- 291
Query: 280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA 339
NG+ L GH +G++++P + SASDD T+ LW+ N +
Sbjct: 292 ----NGQLLQ--TLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQHLQ------ 338
Query: 340 KTIFTGHTAVV 350
TGH++ V
Sbjct: 339 --TLTGHSSSV 347
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 68/372 (18%), Positives = 132/372 (35%), Gaps = 107/372 (28%)
Query: 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
V +SP +TI AS+ D+ + +W+ + +LL GH++ + ++
Sbjct: 186 VAFSPDGQTI-ASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVRGVAF 229
Query: 61 NPNEPWVICSVSEDNIMQI-----------------LSVVCVEPFDDAVEERVINEEYKI 103
+P+ I S S+D +++ ++ V P + ++ K+
Sbjct: 230 SPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 104 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA 159
W +N L L + W + PD + ++ K+W +N L L +
Sbjct: 289 WNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 219
W + P+G+ + SD++ +V+L N + Q
Sbjct: 346 SVWGVAFS--------PDGQTIA--------SASDDK------TVKLWNRNGQL------ 377
Query: 220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS 279
++ H V + P + + S D V + +
Sbjct: 378 -----------------LQTLTGHSSSVRGVAFSPDGQTIAS---ASDDKTVKLWNR--- 414
Query: 280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA 339
NG+ L GH +G++++P + + SASDD T+ LW+ N +
Sbjct: 415 ----NGQLLQ--TLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNGQLLQ------ 461
Query: 340 KTIFTGHTAVVE 351
TGH++ V
Sbjct: 462 --TLTGHSSSVR 471
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
L GH +G++++P + SASDD T+ LW+ N + TGH++ V
Sbjct: 53 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQ--------TLTGHSSSVR 102
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24
Kda Fragment Of Dna Gyrase B Complexed With Novobiocin
At 2.3 Angstroms Resolution
Length = 219
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 211 AQFDASNYDTDKGDFGGFGSVSGKI--EIEIKINHEGEVNRARY---MPQNPCVIATKTP 265
+FD ++Y G G SV + ++E+ I HEG+++R Y +PQ P + +T
Sbjct: 101 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETE 160
Query: 266 SSDVLV 271
+ +V
Sbjct: 161 KTGTMV 166
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 127/319 (39%), Gaps = 63/319 (19%)
Query: 44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKI 103
L+F GHT +S ++PN W + S S D +++I +D E+ + + I
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGA-----YDGKFEKTISGHKLGI 71
Query: 104 ----WKKNTPFLYDLVMTHALE-WPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTH 158
W ++ L L+ W + + L + N + N +L+++
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSG 128
Query: 159 ALE-----WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQF 213
+ + W T L T P D +++V + +
Sbjct: 129 SFDESVRIWDVKTGMCLK--TLPAHSD-------------------PVSAVHFNRDGSLI 167
Query: 214 DASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFD 273
+S+YD G + + SG+ + + V+ ++ P ++A T +D+ ++D
Sbjct: 168 VSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWD 223
Query: 274 YTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG--YLLSASDDHTICLWDINATP 331
Y+K G+C GH+ E Y + N S+ G +++S S+D+ + +W++
Sbjct: 224 YSK--------GKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL---- 269
Query: 332 KENRVIDAKTIFTGHTAVV 350
+ + I K GHT VV
Sbjct: 270 -QTKEIVQK--LQGHTDVV 285
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
LR H+K+ ++ NP + +L +AS D T+ +WD+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
LR H+K+ ++ NP + +L +AS D T+ +WD+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
L+GH+++ Y L + PS L+S S D T+ +WD+
Sbjct: 161 LQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDL 194
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 297
I H G V +Y + VI T + S V V+D C L LR +
Sbjct: 167 RILTGHTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN- 222
Query: 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL 352
NG +++ S D +I +WD+ A+P + I + + GH A V +
Sbjct: 223 ------------NGMMVTCSKDRSIAVWDM-ASPTD---ITLRRVLVGHRAAVNV 261
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
LR H+K+ ++ NP + +L +AS D T+ +WD+
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 297
+ H+G + +Y+P + T + +++D T + G P GH
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPS----GHT 205
Query: 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENR 335
+ LS N +S S D T+ LWD+ T + R
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 338
S+ D +G L GH+ + P L++ S D T LWD+ T + I
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV--TTGQRISIF 196
Query: 339 AKTIFTGHTAVV 350
+GHTA V
Sbjct: 197 GSEFPSGHTADV 208
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV 336
L+GH + Y L W P N +++SAS D + +W+ + K + +
Sbjct: 62 LQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAI 104
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 282 DPNGECHPDLR--LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 332
DP G R LRGH + Y + W + LLSAS D + +WD T K
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 282 DPNGECHPDLR--LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 332
DP G R LRGH + Y + W + LLSAS D + +WD T K
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 297
EI H + + PQN +A S + T SK +C RGH
Sbjct: 840 EIHTGHHSTIQYCDFSPQNH--LAVVALSQYCVELWNTDSRSKV---ADC------RGHL 888
Query: 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI 337
+G+ ++P + +L ++SDD TI LW+ K + V+
Sbjct: 889 SWVHGVMFSPDGSSFL-TSSDDQTIRLWETKKVCKNSAVM 927
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 271 VFDYTKHPSKPDPNGECHPDLRLRGHQ-KEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
V D T P+ D G HP R RG + E G SW L+G +A D++T+ W++
Sbjct: 407 VMDVT--PTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWEL 462
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 342
RGH +G+ ++P + +L +ASDD TI +W+ K + ++ + I
Sbjct: 886 RGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEI 933
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 342
RGH +G+ ++P + +L +ASDD TI +W+ K + ++ + I
Sbjct: 879 RGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEI 926
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P TILAS D ++ +W E+G + +H H+A ++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWK------------EENGRWSQIAVHAVHSASVNSVQ 106
Query: 60 WNPNE--PWVICSVSEDNI 76
W P+E P ++ + S+ +
Sbjct: 107 WAPHEYGPLLLVASSDGKV 125
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79
L+F GHT +S ++PN W + S S D +++I
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKI 52
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF-DYTKHPSKPDPNGECHPDL 291
G E+++ + R R M + + + + +S +L + H D H
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144
Query: 292 RLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
L GH +E GL W P +L S +D+ + +W + P E + +T FT H V+
Sbjct: 145 TLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWP--SAPGEGGWVPLQT-FTQHQGAVK 200
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 282 DPNGECHPDLR--LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 332
DP G R LRGH + Y + W + L+SAS D + +WD T K
Sbjct: 49 DPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 100
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 282 DPNGECHPDLR--LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 332
DP G R LRGH + Y + W + L+SAS D + +WD T K
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 282 DPNGECHPDLR--LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 332
DP G R LRGH + Y + W + L+SAS D + +WD T K
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P TILAS D ++ +W E+G + +H H+A ++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVMIWK------------EENGRWSQIAVHAVHSASVNSVQ 106
Query: 60 WNPNE 64
W P+E
Sbjct: 107 WAPHE 111
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P TILAS D ++ +W E+G + +H H+A ++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVXIWK------------EENGRWSQIAVHAVHSASVNSVQ 106
Query: 60 WNPNE 64
W P+E
Sbjct: 107 WAPHE 111
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P TILAS D ++ +W E+G + +H H+A ++
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWK------------EENGRWSQIAVHAVHSASVNSVQ 108
Query: 60 WNPNE--PWVICSVSEDNI 76
W P+E P ++ + S+ +
Sbjct: 109 WAPHEYGPLLLVASSDGKV 127
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 239 IKINHEGEVNRAR------YMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECH-- 288
+ + +EG++ R PQ P ATK + S D + + +P + + EC
Sbjct: 1 MAVAYEGQLTGHRGWVTSLACPQTP-ETATKVVSTSRDKTLLSWGPNPDRH--SSECSYG 57
Query: 289 -PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 347
PD RL GH ++ + + N + +SAS DH++ LW++ + + F GHT
Sbjct: 58 LPDRRLEGHSAFVSDVALSNNGN-FAVSASWDHSLRLWNLQNGQCQYK-------FLGHT 109
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 222 KGDFGGFGSVSGKIEI-EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF-DYTKHPS 279
+G++ G+ S ++++ +++ + R R M + + + + +S +L + H
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQ-----QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 212
Query: 280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA 339
D H L GH +E GL W P +L S +D+ + +W + P E +
Sbjct: 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWP--SAPGEGGWVPL 269
Query: 340 KTIFTGHTAVVE 351
+T FT H V+
Sbjct: 270 QT-FTQHQGAVK 280
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 291 LRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
L+L GH + L + + G L+S S D T+ +WDI +F GH + V
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTV 206
Query: 351 E-LELIE 356
L+++E
Sbjct: 207 RCLDIVE 213
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 291 LRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
L+L GH + L + + G L+S S D T+ +WDI +F GH + V
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTV 206
Query: 351 E-LELIE 356
L+++E
Sbjct: 207 RCLDIVE 213
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
L GH +E GL W P +L S +D+ + +W + P E + +T FT H V+
Sbjct: 237 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWP--SAPGEGGWVPLQT-FTQHQGAVK 291
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P TILAS D ++ +W E+G + +H H+A ++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWK------------EENGRWSQIAVHAVHSASVNSVQ 106
Query: 60 WNPNE 64
W P+E
Sbjct: 107 WAPHE 111
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
V W+ P ILAS DR++ +W E+G E H GH + ++
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWR------------EENGTWEKSHEHAGHDSSVNSVC 110
Query: 60 WNPNEPWVICSV-SEDNIMQILS 81
W P++ +I + S D + +L+
Sbjct: 111 WAPHDYGLILACGSSDGAISLLT 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,049,622
Number of Sequences: 62578
Number of extensions: 591959
Number of successful extensions: 1685
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 256
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)