Query psy4577
Match_columns 384
No_of_seqs 356 out of 1749
Neff 11.7
Searched_HMMs 29240
Date Fri Aug 16 20:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.2E-39 7.4E-44 286.1 28.4 265 1-368 114-401 (410)
2 3ow8_A WD repeat-containing pr 100.0 6E-39 2.1E-43 273.8 28.7 268 1-369 38-312 (321)
3 4gqb_B Methylosome protein 50; 100.0 3.8E-39 1.3E-43 277.0 26.7 234 1-374 88-326 (344)
4 1got_B GT-beta; complex (GTP-b 100.0 2.2E-38 7.5E-43 272.9 30.7 270 1-368 61-333 (340)
5 2ynn_A Coatomer subunit beta'; 100.0 2.9E-38 9.9E-43 267.8 29.6 259 1-362 19-285 (304)
6 4g56_B MGC81050 protein; prote 100.0 2.1E-38 7.1E-43 274.5 24.6 271 1-365 48-330 (357)
7 1nr0_A Actin interacting prote 100.0 6.7E-38 2.3E-42 290.5 28.7 326 1-365 196-598 (611)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-37 1.4E-41 265.5 28.5 294 1-373 22-329 (345)
9 2pbi_B Guanine nucleotide-bind 100.0 1E-36 3.6E-41 263.6 31.0 273 1-367 70-346 (354)
10 1nr0_A Actin interacting prote 100.0 9.7E-36 3.3E-40 276.0 29.6 268 1-366 24-343 (611)
11 2pm7_B Protein transport prote 100.0 1.9E-35 6.5E-40 249.6 28.3 235 1-368 15-275 (297)
12 3iz6_a 40S ribosomal protein R 100.0 1.3E-36 4.5E-41 265.8 21.8 276 1-367 72-364 (380)
13 4gqb_B Methylosome protein 50; 100.0 3.3E-36 1.1E-40 258.7 23.5 237 1-366 36-276 (344)
14 2ymu_A WD-40 repeat protein; u 100.0 4.6E-35 1.6E-39 270.5 31.1 280 1-366 268-568 (577)
15 2xzm_R RACK1; ribosome, transl 100.0 4.7E-34 1.6E-38 246.2 34.7 282 4-370 35-332 (343)
16 1erj_A Transcriptional repress 100.0 1.4E-34 4.9E-39 254.1 27.8 264 1-358 70-363 (393)
17 4ery_A WD repeat-containing pr 100.0 2.1E-34 7.2E-39 245.3 27.7 263 1-366 29-298 (312)
18 2hes_X YDR267CP; beta-propelle 100.0 2.2E-34 7.5E-39 246.8 26.6 280 2-367 21-317 (330)
19 3bg1_A Protein SEC13 homolog; 100.0 2.2E-35 7.6E-40 251.4 20.2 237 1-368 19-283 (316)
20 2ymu_A WD-40 repeat protein; u 100.0 4.2E-34 1.4E-38 264.0 29.7 292 1-366 22-322 (577)
21 3frx_A Guanine nucleotide-bind 100.0 2.8E-34 9.6E-39 244.9 26.0 274 1-369 23-308 (319)
22 3dwl_C Actin-related protein 2 100.0 3.1E-34 1E-38 250.9 20.1 240 1-365 17-269 (377)
23 2ynn_A Coatomer subunit beta'; 100.0 9.5E-33 3.3E-37 233.9 28.5 238 43-366 4-247 (304)
24 1vyh_C Platelet-activating fac 100.0 2E-33 6.8E-38 248.0 24.5 251 1-328 156-410 (410)
25 2pm9_A Protein WEB1, protein t 100.0 1.7E-33 5.8E-38 249.4 23.7 274 1-366 18-324 (416)
26 4e54_B DNA damage-binding prot 100.0 9.1E-34 3.1E-38 252.4 21.6 201 1-331 125-329 (435)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-32 7.6E-37 235.8 28.8 264 1-331 67-337 (345)
28 3ow8_A WD repeat-containing pr 100.0 1E-32 3.6E-37 235.2 25.8 231 1-328 86-320 (321)
29 4aow_A Guanine nucleotide-bind 100.0 8.6E-32 2.9E-36 231.9 30.8 277 1-368 44-327 (340)
30 3zwl_B Eukaryotic translation 100.0 1.4E-31 4.8E-36 233.0 30.5 275 1-367 38-335 (369)
31 3frx_A Guanine nucleotide-bind 100.0 4.1E-32 1.4E-36 231.5 26.2 241 42-366 7-256 (319)
32 2hes_X YDR267CP; beta-propelle 100.0 2.2E-32 7.5E-37 234.4 24.2 253 1-329 64-328 (330)
33 4g56_B MGC81050 protein; prote 100.0 1.8E-32 6E-37 237.3 23.6 262 10-366 18-288 (357)
34 3mmy_A MRNA export factor; mRN 100.0 6.4E-32 2.2E-36 235.1 27.1 270 1-370 45-338 (368)
35 3vl1_A 26S proteasome regulato 100.0 4.4E-32 1.5E-36 240.7 26.4 295 2-368 104-409 (420)
36 3i2n_A WD repeat-containing pr 100.0 2.6E-32 9.1E-37 236.6 23.9 283 1-369 24-343 (357)
37 3dm0_A Maltose-binding peripla 100.0 1E-31 3.5E-36 253.0 29.0 272 1-369 388-684 (694)
38 1got_B GT-beta; complex (GTP-b 100.0 8.5E-32 2.9E-36 231.8 26.0 232 1-326 103-340 (340)
39 1erj_A Transcriptional repress 100.0 5.9E-32 2E-36 237.4 25.4 243 1-330 129-390 (393)
40 1sq9_A Antiviral protein SKI8; 100.0 7.8E-32 2.7E-36 237.2 25.8 273 1-360 22-367 (397)
41 2pm9_A Protein WEB1, protein t 100.0 1.8E-32 6.1E-37 242.8 21.6 292 1-367 73-403 (416)
42 2xyi_A Probable histone-bindin 100.0 6.2E-32 2.1E-36 240.1 24.9 251 1-365 134-396 (430)
43 1gxr_A ESG1, transducin-like e 100.0 5.5E-31 1.9E-35 226.4 29.8 267 1-368 57-327 (337)
44 1r5m_A SIR4-interacting protei 100.0 6E-32 2.1E-36 239.9 24.5 314 1-367 51-414 (425)
45 3ei3_B DNA damage-binding prot 100.0 1.7E-31 5.9E-36 233.9 27.1 267 1-365 79-370 (383)
46 4h5i_A Guanine nucleotide-exch 100.0 8.4E-34 2.9E-38 246.3 12.0 283 1-367 20-332 (365)
47 3jrp_A Fusion protein of prote 100.0 1.6E-31 5.4E-36 233.6 26.5 236 1-367 17-276 (379)
48 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-32 9.4E-37 273.1 24.5 340 1-367 621-1147(1249)
49 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-31 8E-36 232.0 27.0 255 1-329 14-274 (372)
50 4gga_A P55CDC, cell division c 100.0 6.6E-31 2.3E-35 232.9 29.8 264 1-366 111-383 (420)
51 3dw8_B Serine/threonine-protei 100.0 6E-32 2E-36 241.8 22.4 308 1-367 34-436 (447)
52 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-30 4E-35 250.6 31.5 330 1-359 64-639 (902)
53 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-31 4.3E-36 241.5 23.1 230 10-368 175-418 (524)
54 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-31 1.3E-35 228.3 24.8 257 1-367 17-326 (351)
55 1pgu_A Actin interacting prote 100.0 5.5E-31 1.9E-35 245.0 26.9 320 1-367 166-603 (615)
56 2pbi_B Guanine nucleotide-bind 100.0 5.8E-31 2E-35 227.6 25.0 235 1-326 112-354 (354)
57 3mkq_A Coatomer beta'-subunit; 100.0 7.8E-31 2.7E-35 251.8 28.4 260 1-362 19-285 (814)
58 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-30 4.8E-35 221.6 26.4 253 1-362 24-281 (313)
59 4h5i_A Guanine nucleotide-exch 100.0 4.6E-31 1.6E-35 229.0 23.4 195 1-330 139-344 (365)
60 1yfq_A Cell cycle arrest prote 100.0 4.2E-31 1.4E-35 227.8 23.0 272 1-370 17-315 (342)
61 4ggc_A P55CDC, cell division c 100.0 5.9E-30 2E-34 218.3 29.0 263 1-367 31-304 (318)
62 2aq5_A Coronin-1A; WD40 repeat 100.0 7.2E-31 2.5E-35 231.5 23.2 276 2-367 41-333 (402)
63 3iz6_a 40S ribosomal protein R 100.0 6.7E-31 2.3E-35 229.6 22.5 239 42-367 56-318 (380)
64 3k26_A Polycomb protein EED; W 100.0 4.3E-31 1.5E-35 229.7 21.2 266 1-368 75-356 (366)
65 2xzm_R RACK1; ribosome, transl 100.0 3E-30 1E-34 222.4 24.9 239 43-363 12-271 (343)
66 2j04_B YDR362CP, TAU91; beta p 100.0 9.9E-31 3.4E-35 235.7 21.5 233 1-360 213-496 (524)
67 4gq1_A NUP37; propeller, trans 100.0 1.3E-30 4.4E-35 228.7 21.3 248 4-366 98-378 (393)
68 3jro_A Fusion protein of prote 100.0 4.5E-30 1.5E-34 243.2 25.1 236 1-367 15-274 (753)
69 3vl1_A 26S proteasome regulato 100.0 1.8E-30 6.1E-35 230.3 19.8 277 1-365 62-352 (420)
70 2pm7_B Protein transport prote 100.0 2.1E-29 7.2E-34 212.6 25.3 194 46-359 3-216 (297)
71 4aow_A Guanine nucleotide-bind 100.0 3.2E-29 1.1E-33 215.8 26.5 240 43-364 29-273 (340)
72 4a11_B DNA excision repair pro 100.0 4.3E-29 1.5E-33 220.4 28.0 247 1-367 49-354 (408)
73 3gre_A Serine/threonine-protei 100.0 2.5E-30 8.5E-35 230.6 19.7 280 1-366 69-428 (437)
74 1r5m_A SIR4-interacting protei 100.0 2.7E-29 9.1E-34 222.9 25.7 263 1-328 114-424 (425)
75 1gxr_A ESG1, transducin-like e 100.0 2.8E-29 9.5E-34 215.8 24.7 266 1-366 15-284 (337)
76 4aez_A CDC20, WD repeat-contai 100.0 2E-29 7E-34 222.0 23.7 237 1-331 140-382 (401)
77 3sfz_A APAF-1, apoptotic pepti 100.0 1E-29 3.5E-34 254.5 23.3 318 1-365 846-1196(1249)
78 4ery_A WD repeat-containing pr 100.0 8.1E-29 2.8E-33 210.7 25.5 232 1-328 71-311 (312)
79 4aez_A CDC20, WD repeat-contai 100.0 1.5E-28 5.2E-33 216.4 26.9 258 6-367 102-369 (401)
80 3dm0_A Maltose-binding peripla 100.0 3.4E-29 1.2E-33 235.8 23.5 240 43-365 373-620 (694)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-28 1.1E-32 217.4 28.6 277 3-369 125-429 (445)
82 4gga_A P55CDC, cell division c 100.0 1.7E-28 5.9E-33 217.4 26.4 249 1-353 153-412 (420)
83 3i2n_A WD repeat-containing pr 100.0 6.9E-29 2.3E-33 215.1 22.8 256 1-331 71-355 (357)
84 3v7d_B Cell division control p 100.0 1.1E-27 3.8E-32 215.1 29.0 275 4-365 129-409 (464)
85 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-27 4.4E-32 206.7 28.2 284 1-372 25-330 (355)
86 3bg1_A Protein SEC13 homolog; 100.0 3.5E-29 1.2E-33 213.1 17.3 194 46-359 7-224 (316)
87 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-28 5.2E-33 236.0 23.8 220 1-358 23-282 (902)
88 1pgu_A Actin interacting prote 100.0 7.6E-28 2.6E-32 223.8 27.2 229 1-366 24-271 (615)
89 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-28 4.6E-33 212.1 20.6 223 3-366 44-279 (343)
90 3dwl_C Actin-related protein 2 100.0 1.1E-28 3.7E-33 215.7 19.5 213 1-328 61-280 (377)
91 3gre_A Serine/threonine-protei 100.0 8.2E-29 2.8E-33 220.8 18.9 271 2-365 34-346 (437)
92 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-27 3.7E-32 214.2 25.7 230 49-359 99-366 (450)
93 2j04_A TAU60, YPL007P, hypothe 100.0 6.4E-28 2.2E-32 212.7 22.2 228 1-368 91-351 (588)
94 4e54_B DNA damage-binding prot 100.0 1.4E-28 5E-33 218.8 18.3 202 44-368 111-317 (435)
95 3v7d_B Cell division control p 100.0 2.4E-27 8.2E-32 213.0 26.2 277 1-367 168-451 (464)
96 3f3f_A Nucleoporin SEH1; struc 100.0 8.4E-28 2.9E-32 207.3 21.9 227 1-331 63-339 (351)
97 1k8k_C P40, ARP2/3 complex 41 100.0 1E-27 3.5E-32 209.0 22.4 246 49-365 5-262 (372)
98 2j04_A TAU60, YPL007P, hypothe 100.0 7.5E-29 2.5E-33 218.6 15.2 252 1-367 21-287 (588)
99 3ei3_B DNA damage-binding prot 100.0 1.1E-26 3.8E-31 203.3 28.0 239 42-361 63-324 (383)
100 1sq9_A Antiviral protein SKI8; 100.0 1.4E-27 4.8E-32 210.0 21.7 247 1-330 68-396 (397)
101 4ggc_A P55CDC, cell division c 100.0 1.4E-26 4.8E-31 197.3 27.1 238 1-331 73-317 (318)
102 3k26_A Polycomb protein EED; W 100.0 5.6E-28 1.9E-32 210.0 18.7 242 1-366 24-306 (366)
103 3zwl_B Eukaryotic translation 100.0 4.6E-26 1.6E-30 198.1 30.4 254 39-367 19-279 (369)
104 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-27 2.3E-31 208.1 25.0 255 3-366 139-402 (435)
105 3mkq_A Coatomer beta'-subunit; 100.0 7.8E-27 2.7E-31 224.1 26.8 238 1-330 61-303 (814)
106 2w18_A PALB2, fancn, partner a 100.0 6.9E-27 2.4E-31 193.7 21.1 180 17-328 156-356 (356)
107 2aq5_A Coronin-1A; WD40 repeat 99.9 7.3E-27 2.5E-31 205.8 19.2 250 1-331 87-344 (402)
108 3jrp_A Fusion protein of prote 99.9 2.3E-26 7.7E-31 200.9 22.1 202 44-366 3-228 (379)
109 3lrv_A PRE-mRNA-splicing facto 99.9 7.6E-26 2.6E-30 194.9 24.8 202 1-331 82-294 (343)
110 3odt_A Protein DOA1; ubiquitin 99.9 1.1E-25 3.9E-30 191.2 24.6 226 42-365 8-242 (313)
111 3bws_A Protein LP49; two-domai 99.9 3.3E-25 1.1E-29 197.2 26.2 264 1-367 128-420 (433)
112 4gq1_A NUP37; propeller, trans 99.9 4.1E-26 1.4E-30 200.1 18.7 227 6-328 155-388 (393)
113 1l0q_A Surface layer protein; 99.9 2.9E-24 9.9E-29 188.5 29.9 251 9-366 3-262 (391)
114 3dw8_B Serine/threonine-protei 99.9 1.3E-25 4.3E-30 200.8 21.2 279 50-366 26-361 (447)
115 1yfq_A Cell cycle arrest prote 99.9 2.2E-25 7.6E-30 191.9 20.7 237 47-366 6-270 (342)
116 4a11_B DNA excision repair pro 99.9 6.2E-25 2.1E-29 193.7 22.9 218 1-331 105-367 (408)
117 2w18_A PALB2, fancn, partner a 99.9 1.7E-24 5.8E-29 179.5 22.3 242 10-370 56-349 (356)
118 2xyi_A Probable histone-bindin 99.9 1.1E-25 3.9E-30 199.8 16.5 229 138-366 22-250 (430)
119 3jro_A Fusion protein of prote 99.9 3.5E-25 1.2E-29 209.8 20.2 200 46-366 3-226 (753)
120 1p22_A F-BOX/WD-repeat protein 99.9 1.2E-24 4.1E-29 193.7 21.3 231 6-331 182-416 (435)
121 1l0q_A Surface layer protein; 99.9 2.1E-23 7.2E-28 183.0 28.3 253 1-360 37-302 (391)
122 3mmy_A MRNA export factor; mRN 99.9 1E-23 3.6E-28 183.1 24.3 241 1-331 92-348 (368)
123 3vu4_A KMHSV2; beta-propeller 99.9 4.1E-24 1.4E-28 184.8 21.4 234 44-367 11-260 (355)
124 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.9E-24 2.7E-28 189.2 23.8 251 53-366 5-326 (450)
125 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.8E-23 1.6E-27 183.9 25.2 242 9-330 170-443 (445)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-21 3.7E-26 173.0 26.1 246 7-360 143-410 (415)
127 3bws_A Protein LP49; two-domai 99.9 5.2E-21 1.8E-25 170.1 25.0 229 1-329 175-432 (433)
128 2ojh_A Uncharacterized protein 99.9 1.1E-20 3.7E-25 158.9 24.3 255 14-368 18-292 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-21 6.7E-26 171.3 20.5 260 2-367 69-373 (415)
130 1nir_A Nitrite reductase; hemo 99.9 1.5E-20 5.1E-25 170.8 24.9 278 2-366 144-439 (543)
131 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-21 5.2E-26 172.6 16.9 106 242-366 147-259 (434)
132 1nir_A Nitrite reductase; hemo 99.9 7E-19 2.4E-23 159.8 32.4 280 1-365 184-496 (543)
133 2ecf_A Dipeptidyl peptidase IV 99.9 6.9E-20 2.4E-24 174.0 26.3 103 246-368 338-445 (741)
134 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.9E-24 156.1 23.0 273 7-366 4-295 (343)
135 3u4y_A Uncharacterized protein 99.9 2.3E-19 7.8E-24 153.6 23.6 270 2-367 4-292 (331)
136 1xfd_A DIP, dipeptidyl aminope 99.8 2.6E-19 9E-24 169.6 24.4 315 1-369 22-431 (723)
137 3hfq_A Uncharacterized protein 99.8 4.7E-19 1.6E-23 152.7 23.4 243 1-366 45-304 (347)
138 1k32_A Tricorn protease; prote 99.8 2.8E-19 9.6E-24 175.6 23.5 317 1-366 58-490 (1045)
139 1ri6_A Putative isomerase YBHE 99.8 2.1E-18 7.1E-23 148.2 25.3 274 1-361 43-336 (343)
140 3vgz_A Uncharacterized protein 99.8 3.8E-19 1.3E-23 153.5 19.5 273 1-368 46-334 (353)
141 2z3z_A Dipeptidyl aminopeptida 99.8 2.5E-18 8.6E-23 162.4 23.8 101 247-367 312-420 (706)
142 3o4h_A Acylamino-acid-releasin 99.8 1.9E-18 6.5E-23 159.5 19.5 253 1-365 27-299 (582)
143 1z68_A Fibroblast activation p 99.8 1.8E-19 6E-24 170.6 12.1 226 1-363 21-327 (719)
144 1pby_B Quinohemoprotein amine 99.8 1.5E-17 5.2E-22 142.4 22.9 255 1-345 39-319 (337)
145 3u4y_A Uncharacterized protein 99.8 6.5E-18 2.2E-22 144.5 20.1 239 1-330 45-305 (331)
146 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-18 4.2E-23 154.0 15.9 80 1-84 98-181 (434)
147 3scy_A Hypothetical bacterial 99.8 2.8E-16 9.6E-21 136.1 26.6 256 1-366 55-324 (361)
148 2z3z_A Dipeptidyl aminopeptida 99.8 7.4E-18 2.5E-22 159.2 15.3 108 242-367 255-375 (706)
149 1pby_B Quinohemoprotein amine 99.8 4.3E-17 1.5E-21 139.6 17.6 254 10-365 3-297 (337)
150 1jmx_B Amine dehydrogenase; ox 99.8 1E-15 3.6E-20 131.7 26.3 279 1-344 5-333 (349)
151 2ojh_A Uncharacterized protein 99.7 2.9E-17 1E-21 137.8 15.9 225 1-320 47-293 (297)
152 3hfq_A Uncharacterized protein 99.7 5.7E-16 1.9E-20 133.4 23.5 210 1-328 91-316 (347)
153 3pe7_A Oligogalacturonate lyas 99.7 1E-16 3.5E-21 140.3 17.6 69 1-85 41-112 (388)
154 3scy_A Hypothetical bacterial 99.7 2.6E-15 8.8E-20 130.0 23.7 96 246-356 260-360 (361)
155 4a5s_A Dipeptidyl peptidase 4 99.7 1.4E-16 4.7E-21 151.0 14.8 106 1-151 22-144 (740)
156 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.3E-15 4.4E-20 132.0 18.2 109 244-367 192-329 (365)
157 1k32_A Tricorn protease; prote 99.7 5.3E-15 1.8E-19 145.4 23.5 267 1-366 301-626 (1045)
158 2ecf_A Dipeptidyl peptidase IV 99.7 7.5E-16 2.6E-20 146.3 15.8 251 52-363 36-352 (741)
159 3o4h_A Acylamino-acid-releasin 99.6 4.9E-15 1.7E-19 136.7 16.1 93 248-361 153-259 (582)
160 1z68_A Fibroblast activation p 99.6 4.8E-15 1.6E-19 140.2 15.3 113 242-368 304-430 (719)
161 3vgz_A Uncharacterized protein 99.6 9.3E-14 3.2E-18 119.6 21.9 226 1-320 94-335 (353)
162 1xfd_A DIP, dipeptidyl aminope 99.6 4.1E-13 1.4E-17 127.1 28.2 137 1-154 119-295 (723)
163 3e5z_A Putative gluconolactona 99.6 1.5E-13 5E-18 115.5 21.7 236 1-365 33-274 (296)
164 1jof_A Carboxy-CIS,CIS-muconat 99.6 6.9E-14 2.4E-18 121.1 20.0 76 246-330 255-342 (365)
165 3c5m_A Oligogalacturonate lyas 99.6 1.2E-14 4.1E-19 127.3 15.4 98 246-366 239-369 (396)
166 3fvz_A Peptidyl-glycine alpha- 99.6 6.3E-13 2.2E-17 113.3 24.5 103 246-364 197-308 (329)
167 1q7f_A NHL, brain tumor CG1071 99.6 1.1E-12 3.7E-17 109.5 24.7 99 245-364 164-267 (286)
168 2oiz_A Aromatic amine dehydrog 99.6 4.7E-12 1.6E-16 109.2 27.6 90 250-360 259-360 (361)
169 2dg1_A DRP35, lactonase; beta 99.6 2.5E-12 8.7E-17 109.8 25.7 266 1-364 11-296 (333)
170 4a5s_A Dipeptidyl peptidase 4 99.5 1.9E-13 6.5E-18 129.5 18.0 66 2-85 68-142 (740)
171 2xdw_A Prolyl endopeptidase; a 99.5 1.3E-12 4.5E-17 123.2 23.6 105 242-363 284-395 (710)
172 3azo_A Aminopeptidase; POP fam 99.5 9.3E-13 3.2E-17 123.4 20.9 104 242-363 239-350 (662)
173 1jmx_B Amine dehydrogenase; ox 99.5 1.4E-11 4.7E-16 105.8 21.5 56 299-365 256-312 (349)
174 3azo_A Aminopeptidase; POP fam 99.5 1.8E-12 6.1E-17 121.5 17.0 105 244-364 187-310 (662)
175 1q7f_A NHL, brain tumor CG1071 99.4 4.5E-11 1.5E-15 99.6 23.3 188 4-331 86-282 (286)
176 3g4e_A Regucalcin; six bladed 99.4 1.5E-10 5.2E-15 97.0 26.4 108 245-366 149-260 (297)
177 2bkl_A Prolyl endopeptidase; m 99.4 1.2E-11 4E-16 116.4 18.7 102 243-363 270-378 (695)
178 3pe7_A Oligogalacturonate lyas 99.4 6.7E-11 2.3E-15 103.2 21.0 68 250-329 295-382 (388)
179 1rwi_B Serine/threonine-protei 99.4 1.2E-10 4.1E-15 96.2 21.4 100 246-364 151-250 (270)
180 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.7E-16 106.2 14.1 82 260-365 139-231 (388)
181 3fvz_A Peptidyl-glycine alpha- 99.4 6.6E-11 2.3E-15 100.7 19.1 203 1-330 96-323 (329)
182 2gop_A Trilobed protease; beta 99.4 1.7E-10 5.8E-15 99.0 21.4 86 245-357 217-311 (347)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.4E-10 1.5E-14 94.9 23.5 103 245-362 172-282 (314)
184 1qks_A Cytochrome CD1 nitrite 99.3 1.6E-09 5.6E-14 98.3 27.3 271 9-361 168-453 (567)
185 3no2_A Uncharacterized protein 99.3 4.6E-10 1.6E-14 92.7 21.8 215 9-365 6-230 (276)
186 2ghs_A AGR_C_1268P; regucalcin 99.3 3.4E-09 1.2E-13 90.0 26.7 105 246-365 180-289 (326)
187 2z2n_A Virginiamycin B lyase; 99.3 9.4E-09 3.2E-13 85.9 27.5 256 2-364 21-282 (299)
188 3c5m_A Oligogalacturonate lyas 99.3 1.3E-10 4.5E-15 101.5 16.0 25 2-27 87-111 (396)
189 2dg1_A DRP35, lactonase; beta 99.2 7.3E-09 2.5E-13 88.2 25.6 69 1-85 50-122 (333)
190 1qks_A Cytochrome CD1 nitrite 99.2 1.3E-08 4.3E-13 92.5 26.5 290 1-365 202-520 (567)
191 3hrp_A Uncharacterized protein 99.2 9.5E-09 3.2E-13 89.9 24.8 95 249-364 271-396 (409)
192 2xdw_A Prolyl endopeptidase; a 99.2 2.7E-09 9.4E-14 100.6 22.3 109 243-362 231-350 (710)
193 1yr2_A Prolyl oligopeptidase; 99.2 1.9E-09 6.5E-14 102.2 21.0 93 253-363 324-422 (741)
194 1rwi_B Serine/threonine-protei 99.2 4.2E-09 1.4E-13 86.8 20.0 75 245-331 192-266 (270)
195 3dsm_A Uncharacterized protein 99.2 1.3E-08 4.3E-13 86.5 23.3 63 7-85 53-115 (328)
196 2bkl_A Prolyl endopeptidase; m 99.2 2.8E-09 9.6E-14 100.3 19.8 95 243-356 225-328 (695)
197 2gop_A Trilobed protease; beta 99.1 7E-09 2.4E-13 88.8 19.6 87 246-359 172-274 (347)
198 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.4E-13 85.0 21.2 65 2-83 51-115 (305)
199 2qc5_A Streptogramin B lactona 99.1 1.5E-07 5.2E-12 78.5 26.4 256 2-362 26-286 (300)
200 3iuj_A Prolyl endopeptidase; h 99.1 3.9E-09 1.3E-13 99.1 17.9 101 243-363 279-386 (693)
201 2oiz_A Aromatic amine dehydrog 99.1 3.5E-08 1.2E-12 85.0 21.9 53 247-309 307-359 (361)
202 3e5z_A Putative gluconolactona 99.1 1.7E-08 5.9E-13 84.4 19.2 188 49-363 24-233 (296)
203 2z2n_A Virginiamycin B lyase; 99.0 3.6E-07 1.2E-11 76.2 24.9 231 2-331 63-297 (299)
204 3sjl_D Methylamine dehydrogena 99.0 1.6E-07 5.6E-12 80.2 21.9 117 3-155 40-176 (386)
205 2mad_H Methylamine dehydrogena 99.0 3.7E-07 1.3E-11 78.7 23.9 73 247-331 269-352 (373)
206 3dsm_A Uncharacterized protein 98.9 5.2E-07 1.8E-11 76.5 22.9 102 245-365 172-284 (328)
207 1yr2_A Prolyl oligopeptidase; 98.9 1.3E-07 4.4E-12 89.7 21.1 96 245-356 268-372 (741)
208 2qe8_A Uncharacterized protein 98.9 1.4E-07 4.8E-12 80.6 18.9 110 246-366 196-309 (343)
209 1xip_A Nucleoporin NUP159; bet 98.9 4.9E-08 1.7E-12 83.7 14.2 61 245-317 163-232 (388)
210 2ece_A 462AA long hypothetical 98.8 1.6E-06 5.6E-11 74.7 22.0 68 5-85 93-174 (462)
211 3iuj_A Prolyl endopeptidase; h 98.8 1.8E-07 6E-12 88.0 16.7 106 243-365 232-343 (693)
212 3no2_A Uncharacterized protein 98.8 4.3E-07 1.5E-11 74.8 17.1 100 246-365 78-182 (276)
213 3c75_H MADH, methylamine dehyd 98.8 2.9E-06 9.9E-11 73.8 22.5 76 249-343 323-409 (426)
214 2qc5_A Streptogramin B lactona 98.8 6.5E-06 2.2E-10 68.5 23.9 72 243-328 228-299 (300)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 3.4E-06 1.2E-10 70.8 22.3 74 245-330 226-300 (314)
216 2mad_H Methylamine dehydrogena 98.7 1.7E-05 5.7E-10 68.4 25.6 101 250-367 218-337 (373)
217 2hz6_A Endoplasmic reticulum t 98.7 3.1E-08 1.1E-12 85.5 7.9 59 10-85 11-69 (369)
218 1mda_H Methylamine dehydrogena 98.7 1.2E-05 4E-10 68.8 22.6 89 250-357 269-366 (368)
219 3hrp_A Uncharacterized protein 98.6 1.7E-05 5.6E-10 69.4 23.1 69 246-327 324-408 (409)
220 3g4e_A Regucalcin; six bladed 98.5 5.7E-05 2E-09 62.9 21.8 102 246-360 99-211 (297)
221 1npe_A Nidogen, entactin; glyc 98.5 0.00015 5.1E-09 59.3 23.3 95 246-360 168-263 (267)
222 2qe8_A Uncharacterized protein 98.4 6.3E-06 2.2E-10 70.3 15.2 74 243-327 246-319 (343)
223 2ghs_A AGR_C_1268P; regucalcin 98.4 7.4E-05 2.5E-09 63.1 21.4 101 246-360 135-242 (326)
224 1fwx_A Nitrous oxide reductase 98.4 1.6E-05 5.4E-10 71.2 16.1 124 245-370 277-410 (595)
225 3sjl_D Methylamine dehydrogena 98.3 2.8E-05 9.5E-10 66.5 15.5 73 1-87 83-172 (386)
226 2iwa_A Glutamine cyclotransfer 98.1 0.00054 1.8E-08 55.3 18.8 74 247-330 154-238 (266)
227 2p4o_A Hypothetical protein; p 98.0 0.0027 9.2E-08 52.9 22.5 100 248-366 172-276 (306)
228 3dr2_A Exported gluconolactona 98.0 0.0003 1E-08 58.8 16.2 98 246-363 87-203 (305)
229 2ece_A 462AA long hypothetical 98.0 0.0017 5.7E-08 56.3 20.5 64 246-317 322-399 (462)
230 2fp8_A Strictosidine synthase; 97.8 0.0096 3.3E-07 49.9 22.9 73 246-328 186-268 (322)
231 2iwa_A Glutamine cyclotransfer 97.8 0.0027 9.3E-08 51.2 17.4 97 252-366 112-224 (266)
232 3nol_A Glutamine cyclotransfer 97.8 0.0024 8.3E-08 51.0 16.7 67 2-85 49-117 (262)
233 3nol_A Glutamine cyclotransfer 97.8 0.0026 8.9E-08 50.8 16.8 95 254-366 134-243 (262)
234 3nok_A Glutaminyl cyclase; bet 97.8 0.0051 1.7E-07 49.2 18.0 61 8-85 65-126 (268)
235 2xe4_A Oligopeptidase B; hydro 97.6 0.011 3.8E-07 56.0 21.0 75 246-329 272-354 (751)
236 3v65_B Low-density lipoprotein 97.6 0.03 1E-06 48.3 24.6 75 245-331 246-320 (386)
237 3qqz_A Putative uncharacterize 97.6 0.012 4.1E-07 47.2 17.8 71 246-327 174-251 (255)
238 3v64_C Agrin; beta propeller, 97.5 0.031 1E-06 47.5 23.5 74 246-331 204-277 (349)
239 1kb0_A Quinohemoprotein alcoho 97.5 0.0084 2.9E-07 56.0 18.2 80 267-365 457-537 (677)
240 1npe_A Nidogen, entactin; glyc 97.5 0.029 1E-06 45.4 22.1 75 246-330 123-199 (267)
241 3c75_H MADH, methylamine dehyd 97.5 0.021 7.1E-07 49.7 19.1 65 1-84 182-248 (426)
242 1fwx_A Nitrous oxide reductase 97.4 0.0033 1.1E-07 56.5 14.1 85 245-331 331-433 (595)
243 1yiq_A Quinohemoprotein alcoho 97.4 0.026 8.8E-07 52.8 21.0 82 266-366 454-536 (689)
244 3hxj_A Pyrrolo-quinoline quino 97.3 0.02 7E-07 47.8 17.1 95 244-361 214-308 (330)
245 3p5b_L Low density lipoprotein 97.3 0.079 2.7E-06 45.9 27.3 76 245-331 246-322 (400)
246 3mbr_X Glutamine cyclotransfer 97.3 0.047 1.6E-06 43.2 18.6 67 2-85 27-95 (243)
247 3nok_A Glutaminyl cyclase; bet 97.2 0.032 1.1E-06 44.7 16.3 93 254-364 143-251 (268)
248 3sre_A PON1, serum paraoxonase 97.2 0.075 2.6E-06 44.9 22.7 122 245-382 221-347 (355)
249 1n7d_A LDL receptor, low-densi 97.2 0.0041 1.4E-07 58.2 12.6 75 246-331 541-616 (699)
250 3hxj_A Pyrrolo-quinoline quino 97.0 0.0088 3E-07 50.1 12.4 100 237-361 169-268 (330)
251 3m0c_C LDL receptor, low-densi 97.0 0.26 8.9E-06 46.7 25.3 75 245-331 558-634 (791)
252 1k3i_A Galactose oxidase precu 97.0 0.11 3.7E-06 48.4 19.9 69 3-85 193-275 (656)
253 1ijq_A LDL receptor, low-densi 96.9 0.15 5.2E-06 42.4 26.1 76 245-331 164-240 (316)
254 3mbr_X Glutamine cyclotransfer 96.8 0.13 4.5E-06 40.6 20.2 92 254-363 112-219 (243)
255 3tc9_A Hypothetical hydrolase; 96.8 0.052 1.8E-06 47.6 15.1 72 247-329 228-301 (430)
256 4hw6_A Hypothetical protein, I 96.8 0.25 8.7E-06 43.2 21.0 73 248-327 276-372 (433)
257 2fp8_A Strictosidine synthase; 96.7 0.2 6.8E-06 41.8 19.5 70 247-330 231-314 (322)
258 3sov_A LRP-6, low-density lipo 96.6 0.24 8.1E-06 41.3 23.5 74 246-331 167-240 (318)
259 3kya_A Putative phosphatase; s 96.5 0.35 1.2E-05 42.8 18.6 30 246-275 311-340 (496)
260 2xe4_A Oligopeptidase B; hydro 96.5 0.014 4.7E-07 55.3 10.3 103 246-366 175-289 (751)
261 3qqz_A Putative uncharacterize 96.4 0.099 3.4E-06 41.8 13.0 114 242-367 24-140 (255)
262 1mda_H Methylamine dehydrogena 96.3 0.0081 2.8E-07 51.3 6.5 69 2-85 270-347 (368)
263 3pbp_A Nucleoporin NUP82; beta 96.2 0.08 2.8E-06 45.4 11.9 106 246-359 67-191 (452)
264 1kv9_A Type II quinohemoprotei 95.8 1 3.5E-05 41.9 18.8 85 265-368 436-521 (668)
265 3v64_C Agrin; beta propeller, 95.7 0.79 2.7E-05 38.7 25.9 75 246-330 160-235 (349)
266 2xbg_A YCF48-like protein; pho 95.7 0.65 2.2E-05 38.8 15.8 69 246-327 251-320 (327)
267 2p9w_A MAL S 1 allergenic prot 95.5 0.92 3.1E-05 37.7 15.3 72 247-329 139-215 (334)
268 2hz6_A Endoplasmic reticulum t 95.1 0.025 8.5E-07 48.5 5.3 60 259-331 11-70 (369)
269 3s94_A LRP-6, low-density lipo 94.9 2.3 7.8E-05 39.1 21.6 74 246-331 172-245 (619)
270 4a2l_A BT_4663, two-component 94.8 2.9 0.0001 39.8 23.7 93 245-360 452-555 (795)
271 2p4o_A Hypothetical protein; p 94.5 1.7 5.6E-05 35.8 20.8 62 246-317 213-277 (306)
272 1yiq_A Quinohemoprotein alcoho 94.4 0.17 5.9E-06 47.3 9.4 53 17-85 454-506 (689)
273 3pbp_A Nucleoporin NUP82; beta 94.1 0.39 1.4E-05 41.3 9.9 81 244-325 124-208 (452)
274 3tc9_A Hypothetical hydrolase; 93.9 1 3.5E-05 39.3 12.6 101 243-361 177-283 (430)
275 1kb0_A Quinohemoprotein alcoho 93.6 0.31 1.1E-05 45.5 9.3 52 18-85 457-508 (677)
276 1tl2_A L10, protein (tachylect 93.4 0.42 1.4E-05 37.0 8.1 99 246-362 42-149 (236)
277 4a0p_A LRP6, LRP-6, low-densit 93.3 4.9 0.00017 37.0 28.5 75 244-331 165-239 (628)
278 1ijq_A LDL receptor, low-densi 93.3 2.2 7.6E-05 35.3 13.4 105 244-361 29-133 (316)
279 4a2l_A BT_4663, two-component 93.1 6.1 0.00021 37.6 26.4 97 245-360 357-464 (795)
280 3v65_B Low-density lipoprotein 93.1 3.8 0.00013 35.1 23.4 77 245-331 202-279 (386)
281 3p5b_L Low density lipoprotein 92.5 3.8 0.00013 35.3 14.0 105 243-360 110-214 (400)
282 3sov_A LRP-6, low-density lipo 92.5 4 0.00014 33.8 23.3 75 246-330 123-198 (318)
283 3v9f_A Two-component system se 92.0 8.4 0.00029 36.5 23.3 75 244-331 406-480 (781)
284 4hw6_A Hypothetical protein, I 91.9 5.9 0.0002 34.5 17.5 75 245-329 228-304 (433)
285 3das_A Putative oxidoreductase 91.6 4.7 0.00016 33.9 12.9 112 244-365 31-157 (347)
286 3m0c_C LDL receptor, low-densi 91.5 3.4 0.00012 39.2 13.4 105 243-360 422-526 (791)
287 1cru_A Protein (soluble quinop 91.5 3.3 0.00011 36.4 12.6 113 244-365 26-161 (454)
288 2ism_A Putative oxidoreductase 91.4 5.9 0.0002 33.4 20.6 71 289-363 260-330 (352)
289 3a9g_A Putative uncharacterize 91.3 2.7 9.2E-05 35.5 11.5 110 244-365 28-152 (354)
290 3q7m_A Lipoprotein YFGL, BAMB; 90.9 6.6 0.00023 33.1 18.5 60 10-85 55-123 (376)
291 2ism_A Putative oxidoreductase 90.3 3.7 0.00013 34.6 11.5 107 245-364 31-151 (352)
292 3amr_A 3-phytase; beta-propell 88.5 10 0.00035 31.8 22.6 82 244-331 179-266 (355)
293 2p9w_A MAL S 1 allergenic prot 88.1 4.6 0.00016 33.5 10.0 104 247-365 65-202 (334)
294 3v9f_A Two-component system se 87.1 21 0.00071 33.9 25.6 75 245-331 495-570 (781)
295 1k3i_A Galactose oxidase precu 87.0 2.4 8.3E-05 39.3 8.7 72 249-330 190-275 (656)
296 3kya_A Putative phosphatase; s 86.8 7.1 0.00024 34.6 11.1 107 246-361 187-323 (496)
297 1n7d_A LDL receptor, low-densi 85.8 1.4 4.8E-05 41.3 6.4 81 245-331 406-486 (699)
298 1kv9_A Type II quinohemoprotei 84.2 26 0.0009 32.5 19.6 75 248-331 233-335 (668)
299 2g8s_A Glucose/sorbosone dehyd 82.0 11 0.00037 31.7 9.9 111 245-365 18-147 (353)
300 1cru_A Protein (soluble quinop 80.9 28 0.00096 30.5 19.9 37 294-331 225-261 (454)
301 2ad6_A Methanol dehydrogenase 80.3 3.5 0.00012 37.5 6.7 46 311-363 476-522 (571)
302 2ad6_A Methanol dehydrogenase 78.6 8.9 0.00031 34.8 8.8 24 61-85 472-495 (571)
303 1flg_A Protein (quinoprotein e 78.5 4.4 0.00015 36.9 6.7 50 311-367 498-548 (582)
304 3sre_A PON1, serum paraoxonase 78.4 7.1 0.00024 32.9 7.5 73 245-329 165-252 (355)
305 1flg_A Protein (quinoprotein e 77.7 10 0.00035 34.5 8.9 22 63-85 496-517 (582)
306 3sbq_A Nitrous-oxide reductase 77.1 13 0.00046 33.4 8.8 90 238-330 316-409 (638)
307 3q7m_A Lipoprotein YFGL, BAMB; 76.4 33 0.0011 28.7 24.9 60 259-331 279-339 (376)
308 1tl2_A L10, protein (tachylect 76.0 26 0.00088 27.3 10.0 103 247-361 90-195 (236)
309 2xbg_A YCF48-like protein; pho 73.6 37 0.0013 28.0 11.7 64 246-324 123-187 (327)
310 2wg3_C Hedgehog-interacting pr 73.6 47 0.0016 29.2 14.2 114 245-367 14-158 (463)
311 4a0p_A LRP6, LRP-6, low-densit 72.6 59 0.002 29.9 26.2 74 246-331 478-551 (628)
312 2xzh_A Clathrin heavy chain 1; 70.5 46 0.0016 27.8 24.7 50 298-355 260-309 (365)
313 3s94_A LRP-6, low-density lipo 67.8 75 0.0026 29.1 25.7 75 245-331 479-553 (619)
314 3a9g_A Putative uncharacterize 66.8 56 0.0019 27.3 22.3 68 289-361 250-325 (354)
315 3amr_A 3-phytase; beta-propell 65.9 59 0.002 27.3 16.1 32 53-84 128-162 (355)
316 4gq2_M Nucleoporin NUP120; bet 64.8 6.9 0.00024 38.1 4.9 32 299-331 237-268 (950)
317 2g8s_A Glucose/sorbosone dehyd 63.8 64 0.0022 26.9 23.1 70 243-322 269-347 (353)
318 3sbq_A Nitrous-oxide reductase 63.8 18 0.00061 32.6 6.7 80 2-84 329-408 (638)
319 3das_A Putative oxidoreductase 56.1 89 0.003 26.1 25.4 113 247-365 204-325 (347)
320 4gq2_M Nucleoporin NUP120; bet 54.9 1.6E+02 0.0055 28.7 15.4 31 245-276 236-266 (950)
321 1w6s_A Methanol dehydrogenase 54.4 28 0.00094 31.8 6.7 48 311-365 485-533 (599)
322 4fhn_B Nucleoporin NUP120; pro 51.9 8.3 0.00028 38.5 3.1 32 299-331 239-270 (1139)
323 3zwu_A Alkaline phosphatase PH 50.7 40 0.0014 30.7 6.9 56 300-363 478-546 (592)
324 3f7f_A Nucleoporin NUP120; nuc 50.6 20 0.00067 33.4 5.0 30 299-331 223-252 (729)
325 2wg3_C Hedgehog-interacting pr 46.0 44 0.0015 29.3 6.4 30 299-328 15-44 (463)
326 3ei3_A DNA damage-binding prot 40.9 2.9E+02 0.01 27.7 23.6 84 240-327 965-1060(1158)
327 3s25_A Hypothetical 7-bladed b 37.5 70 0.0024 26.1 6.0 67 251-331 110-178 (302)
328 3zwu_A Alkaline phosphatase PH 36.6 1.3E+02 0.0043 27.5 7.9 60 247-316 478-548 (592)
329 4a9v_A PHOX; hydrolase, beta-p 35.5 1.1E+02 0.0036 27.9 7.0 59 299-365 477-548 (592)
330 4fhn_B Nucleoporin NUP120; pro 35.1 22 0.00076 35.5 3.1 32 54-86 239-270 (1139)
331 3f7f_A Nucleoporin NUP120; nuc 32.8 54 0.0019 30.6 4.9 30 54-86 223-252 (729)
332 2xn4_A Kelch-like protein 2; s 32.4 1.1E+02 0.0037 24.5 6.5 65 255-331 204-278 (302)
333 2vpj_A Kelch-like protein 12; 31.4 96 0.0033 24.8 6.0 65 255-331 206-280 (301)
334 3ii7_A Kelch-like protein 7; p 29.6 2.1E+02 0.0073 22.7 18.1 65 255-331 200-274 (306)
335 1bpo_A Protein (clathrin); cla 29.6 2.9E+02 0.0099 24.3 29.2 51 298-356 259-309 (494)
336 1ukf_A Avirulence protein AVRP 28.6 56 0.0019 24.3 3.4 34 52-85 118-151 (188)
337 4a9v_A PHOX; hydrolase, beta-p 26.6 1.7E+02 0.0058 26.5 6.9 19 53-71 531-549 (592)
338 1sqj_A OXG-RCBH, oligoxylogluc 26.3 1.4E+02 0.0048 28.3 6.8 65 244-316 14-82 (789)
339 3ii7_A Kelch-like protein 7; p 25.5 1.6E+02 0.0056 23.4 6.4 62 258-330 57-128 (306)
340 2cn3_A Xyloglucanase, beta-1,4 22.6 2.5E+02 0.0084 26.4 7.7 62 246-315 24-89 (737)
341 1zgk_A Kelch-like ECH-associat 21.8 2.2E+02 0.0076 22.7 6.5 64 255-330 168-241 (308)
342 3ei3_A DNA damage-binding prot 21.4 6.3E+02 0.022 25.4 25.8 62 9-83 572-635 (1158)
343 1q47_A Semaphorin 3A; beta pro 20.9 2.6E+02 0.009 24.7 7.0 76 246-324 405-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-39 Score=286.12 Aligned_cols=265 Identities=16% Similarity=0.257 Sum_probs=207.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|++|+|||+.+ .+....+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus 114 ~~~~p~~~-~l~s~s~Dg~i~vwd~~~--------------~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 114 VIFHPVFS-VMVSASEDATIKVWDYET--------------GDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLW 177 (410)
T ss_dssp EEECSSSS-EEEEEESSSCEEEEETTT--------------CCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence 46999997 899999999999999986 356677899999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+.+. ...+.+| ...|.+++|+|++..++ |+++++||+........+.
T Consensus 178 d~~~~~~------------------------~~~~~~h--~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 178 DFQGFEC------------------------IRTMHGH--DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp ETTSSCE------------------------EECCCCC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCCce------------------------eEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 9976411 1133345 56799999999998887 9999999998765544333
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. .+..+.+++++..+.....|...+.|.. .....
T Consensus 232 ~h~~---------------------------------------~v~~~~~~~~g~~l~s~s~D~~v~vwd~----~~~~~ 268 (410)
T 1vyh_C 232 GHRE---------------------------------------WVRMVRPNQDGTLIASCSNDQTVRVWVV----ATKEC 268 (410)
T ss_dssp CCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TTCCE
T ss_pred CCCc---------------------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC----CCCce
Confidence 3321 1233334444444444444544444422 11223
Q ss_pred EEEEeecCCceEEEEEcCCC-------------------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC
Q psy4577 237 IEIKINHEGEVNRARYMPQN-------------------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 297 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~-------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 297 (384)
...+..|...|.+++|+|++ ..+|++|+.|+.|++||++ .+ ..+..+.+|.
T Consensus 269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~--------~~--~~~~~~~~h~ 338 (410)
T 1vyh_C 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--------TG--MCLMTLVGHD 338 (410)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT--------TT--EEEEEEECCS
T ss_pred eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC--------CC--ceEEEEECCC
Confidence 45566899999999999962 1489999999999999986 33 3566889999
Q ss_pred CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
..|++++|+|++ .+|+||+.||+|++||+++++ ++.++.+|...|++++|+|+++.+++.+..
T Consensus 339 ~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 339 NWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR-------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp SCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC-------CCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred CcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999999999998 799999999999999999888 899999999999999999999987765543
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-39 Score=273.75 Aligned_cols=268 Identities=15% Similarity=0.189 Sum_probs=202.8
Q ss_pred CCCCCCC---CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577 1 VQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 77 (384)
Q Consensus 1 v~fsp~~---~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i 77 (384)
|+|+|++ ..+||||+.|++|+|||+.... ..+...+.||...|.+++|++++. ++++++.|++|
T Consensus 38 v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------------~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i 104 (321)
T 3ow8_A 38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDER------------LDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHI 104 (321)
T ss_dssp EEEC-------CEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEE
T ss_pred EEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------------eeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcE
Confidence 4677752 2489999999999999987521 245567899999999999999999 88999999999
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD 153 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~ 153 (384)
++||+.+++ .+.. +..| ...+.+++|+|+++.++ ++.+++|+........
T Consensus 105 ~lWd~~~~~-------------~~~~-----------~~~~--~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 105 RLWDLENGK-------------QIKS-----------IDAG--PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEETTTTE-------------EEEE-----------EECC--TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEECCCCC-------------EEEE-----------EeCC--CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 999998751 1111 1122 34577899999999888 8999999987654322
Q ss_pred eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577 154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 233 (384)
.+..+.. .+..+.+++++..+.....|.....|+. ..
T Consensus 159 ~~~~~~~---------------------------------------~v~~~~~spdg~~lasg~~dg~i~iwd~----~~ 195 (321)
T 3ow8_A 159 SLDTRGK---------------------------------------FILSIAYSPDGKYLASGAIDGIINIFDI----AT 195 (321)
T ss_dssp EEECSSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TT
T ss_pred EecCCCc---------------------------------------eEEEEEECCCCCEEEEEcCCCeEEEEEC----CC
Confidence 2221111 2344445555555555555554444322 12
Q ss_pred ceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
...+..+.+|...|++++|+|+++ +|++|+.|+.|++||++ .+ .....+.+|...|.+++|+|++ .+|
T Consensus 196 ~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~--------~~--~~~~~~~~h~~~v~~~~~sp~~-~~l 263 (321)
T 3ow8_A 196 GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQ--------HA--NLAGTLSGHASWVLNVAFCPDD-THF 263 (321)
T ss_dssp TEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred CcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECC--------Cc--ceeEEEcCCCCceEEEEECCCC-CEE
Confidence 233556678999999999999995 99999999999999986 23 2456889999999999999998 799
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577 314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE 369 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~ 369 (384)
++|+.|++|++||+++++ ++.++.+|...|++++|+|+++.+++.+...
T Consensus 264 ~s~s~D~~v~iwd~~~~~-------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRT-------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp EEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEeCCCcEEEEeCCCCE-------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999988 9999999999999999999999887665433
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=277.01 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=182.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++ .|++|+.||+|+|||+.+... .......+.+|.+.|++|+|+|+++ +|++|+.|++|++|
T Consensus 88 ~~~s~d~--~l~~~s~dg~v~lWd~~~~~~----------~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 88 LTWVGER--GILVASDSGAVELWELDENET----------LIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVW 154 (344)
T ss_dssp EEEETTT--EEEEEETTSEEEEEEECTTSS----------CEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEeCCC--eEEEEECCCEEEEEeccCCCc----------eeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 4689985 488999999999999986321 1123345679999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+.+++ .+ ..+.+| ...|.+++|+|++.. ++ |++|++||++.......+
T Consensus 155 d~~~~~-------------~~-----------~~~~~h--~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 155 DLAQQV-------------VL-----------SSYRAH--AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI 208 (344)
T ss_dssp ETTTTE-------------EE-----------EEECCC--SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred ECCCCc-------------EE-----------EEEcCc--CCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence 998751 11 233455 678999999999864 33 899999998654321100
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
T Consensus 209 -------------------------------------------------------------------------------- 208 (344)
T 4gqb_B 209 -------------------------------------------------------------------------------- 208 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
....|...+.+++|+|++.++|++|+.||.|++||++ .+ +++..+.+|...|++++|+|++.++|||
T Consensus 209 ---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~--------~~--~~~~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 209 ---GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK--------ST--SCVLSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ---C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC--------C----CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred ---ecceeeccceeeeecCCCCcceEEeccCCcEEEEECC--------CC--cEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence 0012445688999999776799999999999999986 33 3567899999999999999998568999
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccccee
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKK 374 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~ 374 (384)
|+.|++|+|||+++++ + ..+.+|.+.|++++|||+++.+.+.|..+...+-
T Consensus 276 gs~D~~i~vwd~~~~~-------~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLSE-------L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EETTSCEEEECTTCCE-------E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EeCCCeEEEEECCCCc-------E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 9999999999998874 4 4578999999999999999988877776655443
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-38 Score=272.89 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=202.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +||+|+.|++|+|||+.+ ...+..+..|...|.+++|+|++. +|++++.|+.|++|
T Consensus 61 ~~~s~d~~-~l~s~s~Dg~v~iWd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw 124 (340)
T 1got_B 61 MHWGTDSR-LLLSASQDGKLIIWDSYT--------------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIY 124 (340)
T ss_dssp EEECTTSS-EEEEEETTTEEEEEETTT--------------CCEEEEEECSSSCEEEEEECTTSS-EEEEEETTCEEEEE
T ss_pred EEECCCCC-EEEEEeCCCcEEEEECCC--------------CCcceEeecCCccEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 47999997 899999999999999876 356677789999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~ 157 (384)
++.+.+. ...+...+.+| ...+.++.|++++..+. |+++++||+.+......+..
T Consensus 125 ~~~~~~~--------------------~~~~~~~~~~h--~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 125 NLKTREG--------------------NVRVSRELAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp ETTTCSB--------------------SCEEEEEEECC--SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ECccCCC--------------------cceeEEEecCC--CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence 9976311 00111233455 56789999999987554 99999999977655433333
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
+.. .+..+.+++++..+.....|...+.|+. ......
T Consensus 183 h~~---------------------------------------~v~~~~~~~~~~~l~sg~~d~~v~~wd~----~~~~~~ 219 (340)
T 1got_B 183 HTG---------------------------------------DVMSLSLAPDTRLFVSGACDASAKLWDV----REGMCR 219 (340)
T ss_dssp CSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TTCSEE
T ss_pred CCC---------------------------------------ceEEEEECCCCCEEEEEeCCCcEEEEEC----CCCeeE
Confidence 322 1333444444444444444444444322 112234
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
..+.+|...|++++|+|++. +|++|+.||+|++||++ .+..........+...|++++|+|++ .+|++|+
T Consensus 220 ~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~--------~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~ 289 (340)
T 1got_B 220 QTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLR--------ADQELMTYSHDNIICGITSVSFSKSG-RLLLAGY 289 (340)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEE
T ss_pred EEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECC--------CCcEEEEEccCCcccceEEEEECCCC-CEEEEEC
Confidence 55678999999999999995 99999999999999996 33222212222344579999999999 7999999
Q ss_pred CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
.||.|++||+.+++ .+..+.+|..+|++++|+|++..+++.+..
T Consensus 290 ~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 290 DDFNCNVWDALKAD-------RAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCeEEEEEcccCc-------EeeEeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99999999999988 889999999999999999999988766543
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-38 Score=267.80 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=198.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+++ +||+|+.||+|+|||+.+ ...+..+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 19 ~~fsp~~~-~l~s~~~dg~v~lWd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 19 IDFHPTEP-WVLTTLYSGRVELWNYET--------------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEcCCCcEEEEECCC--------------CceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEE
Confidence 57999997 899999999999999986 467788889999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc-ccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL-YDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~-~~~~ 155 (384)
|+.+++. + ..+.+| ...|.+++|+|+++.++ |++|++||+..... ...+
T Consensus 83 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 83 NYNTGEK-------------V-----------VDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred ECCCCcE-------------E-----------EEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 9987521 1 123344 67799999999999887 99999999876422 2222
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCC-CcccccccccCcCCCCCCccCCCCc
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNE-DAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
..+.. .+.++.+++. +..+.....|...+.|+.. ...
T Consensus 137 ~~h~~---------------------------------------~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~---~~~ 174 (304)
T 2ynn_A 137 EGHEH---------------------------------------FVMCVAFNPKDPSTFASGCLDRTVKVWSLG---QST 174 (304)
T ss_dssp CCCCS---------------------------------------CEEEEEECTTCTTEEEEEETTSEEEEEETT---CSS
T ss_pred cccCC---------------------------------------cEEEEEECCCCCCEEEEEeCCCeEEEEECC---CCC
Confidence 22211 2333444432 2233334444444444221 112
Q ss_pred eeEEEEeecCCceEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577 235 IEIEIKINHEGEVNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY 312 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~ 312 (384)
........|...+..++|+| ++ .+|++|+.|++|++||++ .+ ..+..+.+|...|.+++|+|++ .+
T Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~--------~~--~~~~~~~~h~~~v~~~~~~p~~-~~ 242 (304)
T 2ynn_A 175 PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQ--------TK--SCVATLEGHMSNVSFAVFHPTL-PI 242 (304)
T ss_dssp CSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETT--------TT--EEEEEEECCSSCEEEEEECSSS-SE
T ss_pred ccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCC--------CC--ccceeeCCCCCCEEEEEECCCC-CE
Confidence 22333446778899999987 55 499999999999999986 33 3567899999999999999998 69
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577 313 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
|+||+.||+|++||+++++ .+.++..|...+++++|+|++...
T Consensus 243 l~s~s~Dg~i~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYK-------VEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp EEEEETTSCEEEEETTTCC-------EEEEECCSSSSEEEEEECTTCGGG
T ss_pred EEEEcCCCeEEEEECCCCc-------eeeeccCCCccEEEEEECCCCCce
Confidence 9999999999999999998 999999999999999999998753
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-38 Score=274.52 Aligned_cols=271 Identities=13% Similarity=0.109 Sum_probs=184.2
Q ss_pred CCCCCCCCceEEEeeC------CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC
Q psy4577 1 VQWSPHNETILASSGT------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 74 (384)
Q Consensus 1 v~fsp~~~~~lat~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D 74 (384)
|+|||||. +||+|+. |++|++|+..+... ...+.....+|...|++++|+|++. + ++++.|
T Consensus 48 v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~----------~~~~~~~~~~~~~~V~~~~~s~d~~-~-l~~s~d 114 (357)
T 4g56_B 48 VRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAP----------NESLCTAGVQTEAGVTDVAWVSEKG-I-LVASDS 114 (357)
T ss_dssp EEECSSSC-EEEEEECSSSSSCCEEEEEESSCC-------------CGGGCSEEEECSSCEEEEEEETTTE-E-EEEETT
T ss_pred EEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCc----------ceeEecccCCCCCCEEEEEEcCCCC-E-EEEECC
Confidence 57999997 8999997 77899998765211 1123334457888999999999987 5 478999
Q ss_pred CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccc
Q psy4577 75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPF 150 (384)
Q Consensus 75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~ 150 (384)
|+|++||+.+++.. ....+..+.+...|.+++|+|+++.++ |++|++||..+..
T Consensus 115 g~v~lWd~~~~~~~----------------------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 115 GAVELWEILEKESL----------------------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SCEEEC------------------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEeecccccee----------------------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999775211 000111122367899999999999887 8999999998766
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCcc
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFG 229 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 229 (384)
....+..+... +.++.+. +++. .+.....|.....|+...
T Consensus 173 ~~~~~~~h~~~--v~~v~~s-------------------------------------~~~~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 173 VLKSYNAHSSE--VNCVAAC-------------------------------------PGKDTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp EEEEECCCSSC--EEEEEEC-------------------------------------TTCSSCEEEEETTSCEEECCTTS
T ss_pred EEEEEcCCCCC--EEEEEEc-------------------------------------cCCCceeeeeccCCceEEEECCC
Confidence 54444333221 2223332 2222 122223333333332211
Q ss_pred CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
. ..........|...+.+++|+|++..+|++|+.|+.|++||++ .+ ..+..+.+|...|++++|+|++
T Consensus 214 ~--~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~--------~~--~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 214 P--KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK--------NP--DSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp S--SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS--------CG--GGCEEECCCSSCEEEEEECSSS
T ss_pred C--ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC--------CC--cEeEEEeccceeEEEEEEcCCC
Confidence 0 0111112234677899999999877799999999999999986 33 3566889999999999999998
Q ss_pred CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec-CCCccccc
Q psy4577 310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER-LTKKADPV 365 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~~ 365 (384)
.++||||+.|++|+|||+++++ ++..+ +|.+.|++++||| ++..+++.
T Consensus 282 ~~~lasgs~D~~i~iwd~~~~~-------~~~~~-~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDADFSE-------VFRDL-SHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp SCCEEEEETTSCEEEECTTSCE-------EEEEC-CCSSCEEEEEECSSSTTEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCc-------EeEEC-CCCCCEEEEEEeCCCCCEEEEE
Confidence 6789999999999999999886 66544 7999999999999 45555443
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.7e-38 Score=290.50 Aligned_cols=326 Identities=15% Similarity=0.172 Sum_probs=221.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-------ccccceEEEEEccCCCcEEEEEec
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-------GHTAKISDFSWNPNEPWVICSVSE 73 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~l~~~~~~~~~l~s~s~ 73 (384)
|+|+|+++ +||+|+.|++|+|||+.+ .+....+. +|.+.|++++|+|+++ +|+|++.
T Consensus 196 v~fspdg~-~las~s~D~~i~lwd~~~--------------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~ 259 (611)
T 1nr0_A 196 VRYNPDGS-LFASTGGDGTIVLYNGVD--------------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASA 259 (611)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEET
T ss_pred EEECCCCC-EEEEEECCCcEEEEECCC--------------CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeC
Confidence 47999997 899999999999999875 23444442 8999999999999999 8889999
Q ss_pred CCeEEEEEcccCCCccch-------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce
Q psy4577 74 DNIMQILSVVCVEPFDDA-------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT 134 (384)
Q Consensus 74 D~~i~vwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (384)
|++|++||+.+++..... ......++.+++|+.........+.+| ...|.+++|+|+++
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH--NKAITALSSSADGK 337 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSS
T ss_pred CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCEEEEEEeCCCC
Confidence 999999999876322110 011123566788887665444556667 67899999999999
Q ss_pred eee----cceeeeecccccccccee-ecccccccceeeeeccCCCCC------------------CC-C----cc--cee
Q psy4577 135 RVI----NEEYKIWKKNTPFLYDLV-MTHALEWPSLTAQWLPDVTRP------------------EG-K----DY--SIH 184 (384)
Q Consensus 135 ~~~----d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~-~----~~--~~~ 184 (384)
.++ |+++++||+.+....... ..+.. ...++.+.++.... .. . .. ...
T Consensus 338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~--~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 338 TLFSADAEGHINSWDISTGISNRVFPDVHAT--MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSS--CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeecccCCcc--eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 888 999999999765442221 11111 12222222211100 00 0 00 000
Q ss_pred EEEE---------eeec------cCC----CCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC
Q psy4577 185 RLIL---------GTHT------SDE----QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG 245 (384)
Q Consensus 185 ~~~~---------~~~~------~~~----~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (384)
.+.+ .... ... .....+..+.+++++..+.....|...+.|.... +........+|..
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~---~~~~~~~~~~h~~ 492 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG---ASVSEVKTIVHPA 492 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET---TEEEEEEEEECSS
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC---CceeeeeccCCCC
Confidence 0000 0000 000 0011245678888888888888888777664321 1222222368999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
.|++++|+|+++ +|++++.|++|++|++.. .+.......+.+|...|++++|+|+| ++||||+.|++|++|
T Consensus 493 ~v~~v~fspdg~-~las~s~d~~v~~w~~~~-------~~~~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 493 EITSVAFSNNGA-FLVATDQSRKVIPYSVAN-------NFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVW 563 (611)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEEGGG-------TTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred ceEEEEECCCCC-EEEEEcCCCCEEEEEcCC-------CCceeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEE
Confidence 999999999996 999999999999999862 02221111244599999999999999 799999999999999
Q ss_pred ecCCCCCCCccccce-eeeecc-CCcEeEEEEecCCCccccc
Q psy4577 326 DINATPKENRVIDAK-TIFTGH-TAVVELELIERLTKKADPV 365 (384)
Q Consensus 326 d~~~~~~~~~~~~~~-~~~~~h-~~~v~~~~~sp~~~~~~~~ 365 (384)
|+..+.. .+ ..+.+| ...|++++|+|++. +++.
T Consensus 564 ~~~~~~~------~~~~~~~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 564 NMNKPSD------HPIIIKGAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp ETTCTTS------CCEEETTSSTTSCEEEEEEEETTE-EEEE
T ss_pred ECCCccc------ccchhhccCcccCeeEEEEcCCCE-EEEe
Confidence 9987642 33 567789 89999999999998 5544
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=265.47 Aligned_cols=294 Identities=16% Similarity=0.233 Sum_probs=200.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCe-eEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
|+|+|++. +||+|+.|++|+|||+.... .. ......+|.+.|++++|+|++. +|++|+.|+++++
T Consensus 22 l~~sp~g~-~las~~~D~~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~v~i 87 (345)
T 3fm0_A 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDS------------WICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCI 87 (345)
T ss_dssp EEECTTSS-CEEEEETTSCEEEEEEETTE------------EEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred EEECCCCC-EEEEEcCCCeEEEEEcCCCc------------ceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCcEEE
Confidence 57999997 89999999999999987521 11 1223468999999999999999 8899999999999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|++..... .....+.+| ...|.+++|+|+++.++ |+++++|++........+
T Consensus 88 w~~~~~~~----------------------~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 88 WKKNQDDF----------------------ECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp EEECCC-E----------------------EEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEccCCCe----------------------EEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 99865310 011234455 67899999999999887 999999998654322211
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc-
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK- 234 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 234 (384)
.... .+...+..+.+++++..+.....|...+.|... .+.
T Consensus 144 ~~~~------------------------------------~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~---~~~~ 184 (345)
T 3fm0_A 144 SVLN------------------------------------SHTQDVKHVVWHPSQELLASASYDDTVKLYREE---EDDW 184 (345)
T ss_dssp EEEC------------------------------------CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE---TTEE
T ss_pred EEec------------------------------------CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec---CCCE
Confidence 1100 000124444555555555555555554444221 111
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC-----CCCccceeeecC-CCCceEEEEeCCC
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP-----NGECHPDLRLRG-HQKEGYGLSWNPS 308 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~-h~~~i~~~~~s~~ 308 (384)
.....+.+|...|++++|+|+++ +|++|+.|++|+|||.......... ......+..+.+ |...|.+++|+|+
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 23455678999999999999995 9999999999999997532211000 001122334555 8889999999999
Q ss_pred CCCeEEEeeCCCcEEEEecCCCCCCCcc-cc-ceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577 309 LNGYLLSASDDHTICLWDINATPKENRV-ID-AKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK 373 (384)
Q Consensus 309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~ 373 (384)
+ .+|++++.|+.|++|+.......... .. ....+.+|...|++++|+|+++.+.+.|+.+...+
T Consensus 264 ~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 264 T-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp T-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred C-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 8 79999999999999999865421110 00 12234579999999999999976555555544433
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-36 Score=263.63 Aligned_cols=273 Identities=15% Similarity=0.173 Sum_probs=199.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||||+.|++|+|||..+ ......+..|...|.+++|+|++. +|++++.|+.+++|
T Consensus 70 ~~~s~d~~-~l~s~s~Dg~v~vWd~~~--------------~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 70 MDWCKDKR-RIVSSSQDGKVIVWDSFT--------------TNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTT--------------CCEEEEEECSSSCCCEEEECTTSS-EEEEESTTSEEEEE
T ss_pred EEECCCCC-EEEEEeCCCeEEEEECCC--------------CCcceEEecCCCCEEEEEECCCCC-EEEEeeCCCCEEEE
Confidence 47999997 899999999999999875 345566778889999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
++...... ........+.+| ...|.+++|+|++..++ |+++++||+........+.
T Consensus 134 ~~~~~~~~------------------~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 134 PLTFDKNE------------------NMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp ECCCCTTC------------------CSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEeccccc------------------cccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 98653110 000111233445 67899999999998877 9999999998776554444
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+... +.++.+.+. +++..+.....|.....|+. .....
T Consensus 194 ~h~~~--v~~~~~~~~-----------------------------------~~g~~l~sgs~Dg~v~~wd~----~~~~~ 232 (354)
T 2pbi_B 194 GHGAD--VLCLDLAPS-----------------------------------ETGNTFVSGGCDKKAMVWDM----RSGQC 232 (354)
T ss_dssp CCSSC--EEEEEECCC-----------------------------------SSCCEEEEEETTSCEEEEET----TTCCE
T ss_pred CCCCC--eEEEEEEeC-----------------------------------CCCCEEEEEeCCCeEEEEEC----CCCcE
Confidence 44322 122222221 11222333334444433322 11123
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
...+..|...|++++|+|++. +|++|+.|++|++||++ ............+...+.+++|+|++ .+|++|
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~--------~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g 302 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLR--------ADREVAIYSKESIIFGASSVDFSLSG-RLLFAG 302 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TTEEEEEECCTTCCSCEEEEEECTTS-SEEEEE
T ss_pred EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECC--------CCcEEEEEcCCCcccceeEEEEeCCC-CEEEEE
Confidence 455678999999999999995 99999999999999996 33222222222334578999999998 799999
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
+.|++|++||+.+++ .+..+.+|...|++++|+|+++.+++...
T Consensus 303 ~~d~~i~vwd~~~~~-------~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 303 YNDYTINVWDVLKGS-------RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ETTSCEEEEETTTCS-------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ECCCcEEEEECCCCc-------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 999999999999888 88899999999999999999998776553
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.7e-36 Score=276.04 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=194.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+|+ +||+++ +++|+||++.+ ......+.+|.+.|++++|+|+|+ +||||+.|++|+||
T Consensus 24 ~~~spdg~-~l~~~~-~~~v~l~~~~~--------------~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lW 86 (611)
T 1nr0_A 24 LGNTPAGD-KIQYCN-GTSVYTVPVGS--------------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIW 86 (611)
T ss_dssp CEECTTSS-EEEEEE-TTEEEEEETTC--------------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EeeCCCCC-EEEeCC-CCEEEEecCCC--------------cccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEe
Confidence 57999997 789887 57999999975 356677889999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeecccccccc
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTPFLY 152 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~~~~ 152 (384)
|+..++. .+...+.+| ..+|.+++|+|+++.++ + +.+++|+.... .
T Consensus 87 d~~~~~~----------------------~~~~~~~~~--~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~ 140 (611)
T 1nr0_A 87 DTTQTTH----------------------ILKTTIPVF--SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--N 140 (611)
T ss_dssp ESSSTTC----------------------CEEEEEECS--SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--C
T ss_pred ECCCCcc----------------------eeeEeeccc--CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--c
Confidence 9865311 011123344 56899999999999887 1 47889985321 1
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc-cccccccCcCCCCCCccCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ-FDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~ 231 (384)
..+..+.. .+..+.+++++.. +.....|...+.|..
T Consensus 141 ~~l~gh~~---------------------------------------~v~~v~f~p~~~~~l~s~s~D~~v~lwd~---- 177 (611)
T 1nr0_A 141 GNLTGQAR---------------------------------------AMNSVDFKPSRPFRIISGSDDNTVAIFEG---- 177 (611)
T ss_dssp BCCCCCSS---------------------------------------CEEEEEECSSSSCEEEEEETTSCEEEEET----
T ss_pred ceecCCCC---------------------------------------CceEEEECCCCCeEEEEEeCCCeEEEEEC----
Confidence 11122211 2444555554432 444455555554432
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-------CCCCceEEEE
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-------GHQKEGYGLS 304 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~~~~ 304 (384)
........+.+|...|++++|+|+++ +||+|+.|++|++||+. .+.. +..+. +|.+.|.+++
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~--------~g~~--~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGV--------DGTK--TGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TCCE--EEECBCTTSSSCSSSSCEEEEE
T ss_pred CCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECC--------CCcE--eeeeccccccccccCCCEEEEE
Confidence 11223455678999999999999995 99999999999999986 3332 23342 7999999999
Q ss_pred eCCCCCCeEEEeeCCCcEEEEecCCCCCCCcc------------------------------------ccceeeeeccCC
Q psy4577 305 WNPSLNGYLLSASDDHTICLWDINATPKENRV------------------------------------IDAKTIFTGHTA 348 (384)
Q Consensus 305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~h~~ 348 (384)
|+|++ .+|+|++.|++|++||+++++..... ..+...+.+|..
T Consensus 247 ~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~ 325 (611)
T 1nr0_A 247 WSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325 (611)
T ss_dssp ECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred ECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence 99998 79999999999999999876411000 002345568999
Q ss_pred cEeEEEEecCCCcccccc
Q psy4577 349 VVELELIERLTKKADPVC 366 (384)
Q Consensus 349 ~v~~~~~sp~~~~~~~~c 366 (384)
.|++++|+|+++.+++.+
T Consensus 326 ~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 326 AITALSSSADGKTLFSAD 343 (611)
T ss_dssp CEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEe
Confidence 999999999999877664
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-35 Score=249.63 Aligned_cols=235 Identities=16% Similarity=0.187 Sum_probs=175.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~ 78 (384)
++|+|+++ +||+|+.|++|+|||+.... .+++.++.+|.+.|++++|+|+ +. +|+||+.|++|+
T Consensus 15 ~~~s~~g~-~las~s~D~~v~iw~~~~~~------------~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~ 80 (297)
T 2pm7_B 15 AVMDYYGK-RMATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVM 80 (297)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEBCSSC------------BCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEecCCCC------------cEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEEE
Confidence 47999997 79999999999999997421 2556788999999999999864 66 889999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+.+++.. ....+.+| ...|.+++|+|+ +..++ |+++++|++......
T Consensus 81 iWd~~~~~~~----------------------~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 81 IWKEENGRWS----------------------QIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp EEEBSSSCBC----------------------CCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred EEEcCCCceE----------------------EEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 9999764110 00122234 567999999998 66665 889999987542110
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
.
T Consensus 137 ~------------------------------------------------------------------------------- 137 (297)
T 2pm7_B 137 S------------------------------------------------------------------------------- 137 (297)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CceeEEEEeecCCceEEEEEcCCC------------CcEEEEEeCCCcEEEEecCCCCCCCCCCCC--ccceeeecCCCC
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQN------------PCVIATKTPSSDVLVFDYTKHPSKPDPNGE--CHPDLRLRGHQK 298 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~h~~ 298 (384)
.....+|...|++++|+|++ ..+|++|+.|++|++||++ .+. ......+.+|..
T Consensus 138 ----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~--------~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--------SDAQTYVLESTLEGHSD 205 (297)
T ss_dssp ----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE--------TTTTEEEEEEEECCCSS
T ss_pred ----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc--------CCCceEEEEEEecCCCC
Confidence 11223567778888888752 2489999999999999996 222 224457889999
Q ss_pred ceEEEEeCCCC--CCeEEEeeCCCcEEEEecCCCCCCCccccceeee--eccCCcEeEEEEecCCCcccccccc
Q psy4577 299 EGYGLSWNPSL--NGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 299 ~i~~~~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
.|.+++|+|++ ..+||||+.|++|+|||+++.... . ....+ .+|...|++++|+|+++.+++.+..
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--~--~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--W--KKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--C--EEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--c--ceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 99999999984 269999999999999999875310 0 11222 4688999999999999988876543
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-36 Score=265.80 Aligned_cols=276 Identities=14% Similarity=0.195 Sum_probs=196.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+++ +||+|+.|++|+|||+.+ .+....+.+|...|.+++|+|+++ +|++|+.|+++++|
T Consensus 72 ~~~sp~~~-~l~s~s~D~~v~iWd~~~--------------~~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d~~v~iw 135 (380)
T 3iz6_a 72 LDWTPEKN-WIVSASQDGRLIVWNALT--------------SQKTHAIKLHCPWVMECAFAPNGQ-SVACGGLDSACSIF 135 (380)
T ss_dssp EEECTTSS-CEEEEETTSEEEEEETTT--------------TEEEEEEECCCTTCCCCEECTTSS-EEEECCSSSCCEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEECCC--------------CccceEEecCCCCEEEEEECCCCC-EEEEeeCCCcEEEE
Confidence 47999997 799999999999999976 467778899999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce-eee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
++...... .....+...+.+| ...+.++.|+|++. .++ |+++++||+.+......+
T Consensus 136 ~~~~~~~~-----------------~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 136 NLSSQADR-----------------DGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp ECCCCSSC-----------------CCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred ECCCCccc-----------------cCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 99763110 0011122345566 66788999999754 354 999999999776543322
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCC-CCcccccccccCcCCCCCCccCCCCc
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN-EDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
...... .+...+..+.+.+ ++..+.....|...+.|+... ..
T Consensus 197 ~~~~~~----------------------------------~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~ 239 (380)
T 3iz6_a 197 GSEFPS----------------------------------GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TS 239 (380)
T ss_dssp CCCSSS----------------------------------SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT---TC
T ss_pred ecccCC----------------------------------CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC---CC
Confidence 110000 0001123333322 223333344454444443210 11
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-------CCceEEEEeCC
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-------QKEGYGLSWNP 307 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~s~ 307 (384)
.....+.+|.+.|++++|+|++. +|++|+.||+|++||++ .+. .+..+..+ ...|++++|+|
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~--------~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMR--------TGH--QLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETT--------TTE--EEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred cceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECC--------CCc--EEEEecccccccccccCceEEEEECC
Confidence 22455678999999999999995 99999999999999997 333 22333332 23589999999
Q ss_pred CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee----eccCCcEeEEEEecCCCccccccc
Q psy4577 308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF----TGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
+| .+|++|+.||.|++||+..++ .+..+ .+|.+.|++++|+|++..+++.+.
T Consensus 309 ~g-~~l~~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 309 SG-RLLFAGYSNGDCYVWDTLLAE-------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp SS-SEEEEECTTSCEEEEETTTCC-------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred CC-CEEEEEECCCCEEEEECCCCc-------eEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 99 799999999999999999887 66555 679999999999999998776543
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=258.72 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=170.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|||. +|++++ |+++++||.....-.... .. ...........|...|++++|+|++. |++|+.||+|+||
T Consensus 36 ~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~-~~--~~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~s~dg~v~lW 108 (344)
T 4gqb_B 36 ARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPC-AA--PNEGFCSAGVQTEAGVADLTWVGERG--ILVASDSGAVELW 108 (344)
T ss_dssp EEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGG-GT--TCGGGCSEEEEESSCEEEEEEETTTE--EEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEe-CCceEEeeceeeeecccc-cc--CCcceeeeeeccCCCEEEEEEeCCCe--EEEEECCCEEEEE
Confidence 47999997 788777 778888874310000000 00 00011112234667899999999865 5699999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++... . ......+| ...|.+++|+|+++.++ |++|++||+.+...
T Consensus 109 d~~~~~~~~-------------~-------~~~~~~~H--~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~----- 161 (344)
T 4gqb_B 109 ELDENETLI-------------V-------SKFCKYEH--DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV----- 161 (344)
T ss_dssp EECTTSSCE-------------E-------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred eccCCCcee-------------E-------eeccccCC--CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence 998752210 0 10122344 77899999999999888 89999998754322
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
T Consensus 162 -------------------------------------------------------------------------------- 161 (344)
T 4gqb_B 162 -------------------------------------------------------------------------------- 161 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
+..+.+|.+.|++++|+|++..+|++|+.|++|++||++ .+..........|...+++++|+|++..+|++|
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR--------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT--------SSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeecccccccccccc--------ccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 223347899999999999987799999999999999997 343333223345667899999999765789999
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+.||+|++||+++++ ++.++.+|...|++++|+|++..+...|
T Consensus 234 ~~dg~v~~wd~~~~~-------~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 234 DENGTVSLVDTKSTS-------CVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp ETTSEEEEEESCC---------CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred ccCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 999999999999998 9999999999999999999997544443
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-35 Score=270.48 Aligned_cols=280 Identities=20% Similarity=0.369 Sum_probs=211.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +|++++.|+.|++||... +.+..+.+|...|.+++|+|++. +|++++.|++|++|
T Consensus 268 v~~~~d~~-~l~~~~~d~~i~~w~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 268 VAFRPDGQ-TIASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW 330 (577)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTS---------------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEcCCCC-EEEEEeCCCEEEEEeCCC---------------cEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 46899997 799999999999999764 66778899999999999999999 88899999999999
Q ss_pred EcccCCCcc---------------ch--hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cc
Q psy4577 81 SVVCVEPFD---------------DA--VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE 139 (384)
Q Consensus 81 d~~~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~ 139 (384)
|....+... +. ......++.+++|+.....+ ..+.+| ...|.+++|+|+++.++ |+
T Consensus 331 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~-~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGH--SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE-EEEECC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred eCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE-EEecCC--CCCeEEEEECCCCCEEEEEeCCC
Confidence 986542100 00 01112356788998765533 455556 67899999999999887 89
Q ss_pred eeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc
Q psy4577 140 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 219 (384)
Q Consensus 140 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 219 (384)
.+++|+.....+ ..+..+.. .+..+.+++++..+.....|
T Consensus 408 ~v~~~~~~~~~~-~~~~~~~~---------------------------------------~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 408 TVKLWNRNGQLL-QTLTGHSS---------------------------------------SVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEEECTTCCEE-EEEECCSS---------------------------------------CEEEEEECTTSSEEEEEETT
T ss_pred EEEEEeCCCCEE-EEecCCCC---------------------------------------CeEEEEECCCCCEEEEEcCC
Confidence 999999654322 22222211 13334444444444444444
Q ss_pred CcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577 220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 299 (384)
.....|. ..+. ......+|...|++++|+|+++ +||+++.|+.|++||. ++. .+..+.+|...
T Consensus 448 ~~v~~w~----~~~~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~---------~~~--~~~~~~~h~~~ 510 (577)
T 2ymu_A 448 KTVKLWN----RNGQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR---------NGQ--LLQTLTGHSSS 510 (577)
T ss_dssp SEEEEEE----TTSC-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEET---------TSC--EEEEEECCSSC
T ss_pred CEEEEEE----CCCC-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcC---------CCC--EEEEEeCCCCC
Confidence 4443332 1222 2456678999999999999996 9999999999999996 333 45688999999
Q ss_pred eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 300 i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
|++++|+|++ ++||+++.||.|+|||. +++ ++.++.+|.+.|++++|+||++.+++..
T Consensus 511 v~~l~~s~dg-~~l~s~~~dg~v~lwd~-~~~-------~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 511 VRGVAFSPDG-QTIASASDDKTVKLWNR-NGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp EEEEEECTTS-SCEEEEETTSEEEEECT-TSC-------EEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEEEcCCC-CEEEEEECcCEEEEEeC-CCC-------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9999999999 79999999999999996 455 8899999999999999999999887654
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-34 Score=246.24 Aligned_cols=282 Identities=15% Similarity=0.170 Sum_probs=188.5
Q ss_pred CC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577 4 SP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV 82 (384)
Q Consensus 4 sp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~ 82 (384)
+| +++ +||||+.|++|+|||+...... .........+.+|...|++++|+|++. +|++++.|++|++||+
T Consensus 35 ~~~d~~-~l~sgs~D~~v~iWd~~~~~~~-------~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 35 ENEDSP-VLISGSRDKTVMIWKLYEEEQN-------GYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWDKTLRLWDL 105 (343)
T ss_dssp TTCCCC-EEEEEETTSCEEEEEECSSCCS-------SBSEEEEEEECCCSSCEEEEEECSSTT-EEEEEETTSEEEEEET
T ss_pred cCCCCC-EEEEEcCCCEEEEEECCcCCcc-------cccccccchhccCCCceEEEEECCCCC-EEEEEcCCCcEEEEEC
Confidence 55 665 8999999999999999752110 001245677899999999999999999 8889999999999999
Q ss_pred ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecc
Q psy4577 83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTH 158 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~ 158 (384)
.+++. + ..+.+| ...|.+++|+|+++.++ |+++++||+............
T Consensus 106 ~~~~~-------------~-----------~~~~~h--~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 159 (343)
T 2xzm_R 106 RTGTT-------------Y-----------KRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159 (343)
T ss_dssp TSSCE-------------E-----------EEEECC--CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred CCCcE-------------E-----------EEEcCC--CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence 77511 1 133345 67899999999999887 999999998643322111111
Q ss_pred cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577 159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 238 (384)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 238 (384)
.......++.|.|+....... .+....+.....|.....|.. ......
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~---------------------------~~~~~~l~s~~~d~~i~iwd~-----~~~~~~ 207 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKV---------------------------QPFAPYFASVGWDGRLKVWNT-----NFQIRY 207 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCC---------------------------CSSCCEEEEEETTSEEEEEET-----TTEEEE
T ss_pred CCCceeeeeeecccccccccc---------------------------CCCCCEEEEEcCCCEEEEEcC-----CCceeE
Confidence 111123344555443211000 000111222233333333321 112244
Q ss_pred EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577 239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~ 318 (384)
...+|...|++++|+|+++ +|++|+.||.|++||++. . ..+...+ .+...|.+++|+|++ .+|+ ++.
T Consensus 208 ~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~--------~-~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~ 274 (343)
T 2xzm_R 208 TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILN--------L-TYPQREF-DAGSTINQIAFNPKL-QWVA-VGT 274 (343)
T ss_dssp EEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSC--------C-SSCSEEE-ECSSCEEEEEECSSS-CEEE-EEE
T ss_pred EEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCC--------C-cccceee-cCCCcEEEEEECCCC-CEEE-EEC
Confidence 5678999999999999995 999999999999999842 1 1122233 245579999999997 5665 556
Q ss_pred CCcEEEEecCCCCCCCccccceeee-----------eccCCcEeEEEEecCCCcccccccccc
Q psy4577 319 DHTICLWDINATPKENRVIDAKTIF-----------TGHTAVVELELIERLTKKADPVCTLEK 370 (384)
Q Consensus 319 Dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~sp~~~~~~~~c~~~~ 370 (384)
|+.|++||+.+.+.. .+..+ .+|...|++++|+|+++.+++.+....
T Consensus 275 d~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKA-----PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp SSCEEEEESSSCCSC-----SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred CCCEEEEEeCCCCCC-----ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 889999999876521 11122 378889999999999998887665443
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-34 Score=254.05 Aligned_cols=264 Identities=16% Similarity=0.238 Sum_probs=181.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc------------------cccceEEEEEcc
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG------------------HTAKISDFSWNP 62 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g------------------h~~~V~~l~~~~ 62 (384)
++|+|+|+ +||+|+ |++++||++.+. +.+..+.+ +...|++++|+|
T Consensus 70 v~fspdg~-~la~g~-~~~v~i~~~~~g--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 70 VKFSNDGE-YLATGC-NKTTQVYRVSDG--------------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEECTTSS-EEEEEC-BSCEEEEETTTC--------------CEEEEECC-----------------CCCCBEEEEEECT
T ss_pred EEECCCCC-EEEEEc-CCcEEEEEecCC--------------CEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 47999997 799876 789999999762 22233322 233599999999
Q ss_pred CCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577 63 NEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N 138 (384)
Q Consensus 63 ~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d 138 (384)
+++ +|++|+.|++|++||+.+++ .+ ..+.+| ...|.+++|+|++..++ |
T Consensus 134 dg~-~l~s~~~d~~i~iwd~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 134 DGK-FLATGAEDRLIRIWDIENRK-------------IV-----------MILQGH--EQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTE-------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred CCC-EEEEEcCCCeEEEEECCCCc-------------EE-----------EEEccC--CCCEEEEEEcCCCCEEEEecCC
Confidence 999 88899999999999997741 11 123345 66799999999998887 9
Q ss_pred ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577 139 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY 218 (384)
Q Consensus 139 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 218 (384)
+++++||+.+......+.. ......+.+.|. ++..+.....
T Consensus 187 ~~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~------------------------------------~~~~l~~~s~ 227 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPG------------------------------------DGKYIAAGSL 227 (393)
T ss_dssp SEEEEEETTTTEEEEEEEC---SSCEEEEEECST------------------------------------TCCEEEEEET
T ss_pred CcEEEEECCCCeeEEEEEc---CCCcEEEEEECC------------------------------------CCCEEEEEcC
Confidence 9999999976544322211 111222333221 2222222333
Q ss_pred cCcCCCCCCccCCCCcee------EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC--CCCccce
Q psy4577 219 DTDKGDFGGFGSVSGKIE------IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP--NGECHPD 290 (384)
Q Consensus 219 d~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~ 290 (384)
|.....|+.. .+... .....+|...|.+++|+|+++ +|++|+.|+.|++||++........ .......
T Consensus 228 d~~v~iwd~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 228 DRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp TSCEEEEETT---TCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEE
T ss_pred CCcEEEEECC---CCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence 3333333210 01110 011247899999999999995 9999999999999999742211000 0111234
Q ss_pred eeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577 291 LRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL 358 (384)
Q Consensus 291 ~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 358 (384)
..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++ ++..+.+|...|++++|+|.
T Consensus 304 ~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~-------~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 304 VTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN-------PLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp EEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSS
T ss_pred EEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe-------EEEEECCCCCCEEEEEecCC
Confidence 5778999999999999998 799999999999999999998 89999999999999999874
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-34 Score=245.26 Aligned_cols=263 Identities=21% Similarity=0.365 Sum_probs=194.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +||+|+.|+.|+||++.+ .+....+.+|...|.+++|+|+++ +|++++.|++|++|
T Consensus 29 ~~~s~~~~-~l~s~~~dg~i~iw~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vw 92 (312)
T 4ery_A 29 VKFSPNGE-WLASSSADKLIKIWGAYD--------------GKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIW 92 (312)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEeeCCCeEEEEeCCC--------------cccchhhccCCCceEEEEEcCCCC-EEEEECCCCEEEEE
Confidence 47999997 899999999999999876 356677889999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++. + ..+.+| ...|.+++|+|+++.++ |+.+++||+........+.
T Consensus 93 d~~~~~~-------------~-----------~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 93 DVSSGKC-------------L-----------KTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ECCCCcE-------------E-----------EEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 9977411 1 122334 56788999999998887 8999999997765433332
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. + +..+.+++++..+.....|.....|+. ..+...
T Consensus 147 ~~~~--~-------------------------------------v~~~~~~~~~~~l~~~~~d~~i~~wd~---~~~~~~ 184 (312)
T 4ery_A 147 AHSD--P-------------------------------------VSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCL 184 (312)
T ss_dssp CCSS--C-------------------------------------EEEEEECTTSSEEEEEETTSCEEEEET---TTCCEE
T ss_pred CCCC--c-------------------------------------EEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCcee
Confidence 2211 1 233333333333333344443333321 112222
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE--EEEeC-CCCCCeE
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY--GLSWN-PSLNGYL 313 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s-~~~~~~l 313 (384)
......+...+..++|+|+++ +|++++.|+.|++||++ .+ ..+..+.+|...+. ...++ +++ .+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 252 (312)
T 4ery_A 185 KTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYS--------KG--KCLKTYTGHKNEKYCIFANFSVTGG-KWI 252 (312)
T ss_dssp EEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETT--------TT--EEEEEECSSCCSSSCCCEEEECSSS-CEE
T ss_pred eEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECC--------CC--cEEEEEEecCCceEEEEEEEEeCCC-cEE
Confidence 222335667899999999995 99999999999999986 33 34557777866433 23444 555 799
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
++|+.||.|++||+++++ .+..+.+|...|.+++|+|+++.+++.+
T Consensus 253 ~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKE-------IVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EECCTTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCCEEEEEECCCch-------hhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 999999999999999988 8999999999999999999999877654
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=246.79 Aligned_cols=280 Identities=16% Similarity=0.220 Sum_probs=184.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cc-cccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~g-h~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
+|+|+ +||+|+.|++|+|||+.... ......+ .+ |.+.|++++|+|+++ +|++|+.|++|++
T Consensus 21 ~~s~~---~las~~~D~~i~lw~~~~~~------------~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~i 84 (330)
T 2hes_X 21 DFSQG---ILATGSTDRKIKLVSVKYDD------------FTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSI 84 (330)
T ss_dssp EEETT---EEEEEESSSCEEEEECSSSC------------CEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred ccCCC---EEEEEcCCCEEEEEEecCCC------------eEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEE
Confidence 46665 79999999999999997521 2445555 44 999999999999999 8899999999999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-cccc-
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYD- 153 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~- 153 (384)
||+..... ..........+.+| ...|.+++|+|+++.++ |+++++||+... ....
T Consensus 85 w~~~~~~~-----------------~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~ 145 (330)
T 2hes_X 85 WAKEESAD-----------------RTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145 (330)
T ss_dssp EEC------------------------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred EEcccCcC-----------------ccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence 99864210 00001112244556 67899999999999888 999999998432 1111
Q ss_pred --eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 154 --LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
.+..+. ..+..+.+++++..+.....|...+.|....
T Consensus 146 ~~~~~~h~---------------------------------------~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-- 184 (330)
T 2hes_X 146 ISVLQEHS---------------------------------------QDVKHVIWHPSEALLASSSYDDTVRIWKDYD-- 184 (330)
T ss_dssp EEEECCCS---------------------------------------SCEEEEEECSSSSEEEEEETTSCEEEEEEET--
T ss_pred EEEeccCC---------------------------------------CceEEEEECCCCCEEEEEcCCCeEEEEECCC--
Confidence 111111 1244555555555555556666655553211
Q ss_pred CCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCC
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPS 308 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~ 308 (384)
.....+..+.+|.+.|.+++|+|+ + .+|++|+.|++|++||++...... .........+.+ |...|.+++|+++
T Consensus 185 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 185 DDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDD--QQEWVCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTS--CEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred CCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccc--cceeEEeeecccccccceEEEEEcCC
Confidence 011234566789999999999998 5 489999999999999986321100 001122334554 8999999999976
Q ss_pred CCCeEEEeeCCCcEEEEecCCCCCCCcccccee-eeeccCC-cEeEEEEec--CCCccccccc
Q psy4577 309 LNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTA-VVELELIER--LTKKADPVCT 367 (384)
Q Consensus 309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~h~~-~v~~~~~sp--~~~~~~~~c~ 367 (384)
.+|++++.||+|+|||..+++. ..+. .+.+|.. .|++++|+| ++..+++.+.
T Consensus 262 --~~l~s~~~dg~v~iw~~~~~~~-----~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 262 --GLIASVGADGVLAVYEEVDGEW-----KVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp --SCEEEEETTSCEEEEEEETTEE-----EEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred --CEEEEEeCCCEEEEEEcCCCce-----EEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 3899999999999999976530 0232 3457887 899999999 5666655543
No 19
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-35 Score=251.41 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=170.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~ 78 (384)
|+|+|++. +||+|+.|++|+|||+.+.. ..++..+.+|.+.|++++|+|+ +. +|+||+.|++|+
T Consensus 19 v~~s~~g~-~lasgs~D~~v~lwd~~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~ 84 (316)
T 3bg1_A 19 AQMDYYGT-RLATCSSDRSVKIFDVRNGG------------QILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVI 84 (316)
T ss_dssp EEECGGGC-EEEEEETTTEEEEEEEETTE------------EEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCEE
T ss_pred eeEcCCCC-EEEEEeCCCeEEEEEecCCC------------cEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEEE
Confidence 47999997 79999999999999997521 2356788999999999999863 66 788999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+.+++.. ....+.+| ...|.+++|+|+ +..++ |+++++|+.......
T Consensus 85 iWd~~~~~~~----------------------~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 85 IWREENGTWE----------------------KSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp EECCSSSCCC----------------------EEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred EEECCCCcce----------------------EEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 9999764110 00122344 567999999998 66665 899999988653211
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
......
T Consensus 141 ~~~~~~-------------------------------------------------------------------------- 146 (316)
T 3bg1_A 141 EVKKIN-------------------------------------------------------------------------- 146 (316)
T ss_dssp EECCBT--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 100000
Q ss_pred CceeEEEEeecCCceEEEEEcCC-----------------CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQ-----------------NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG 295 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~-----------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 295 (384)
.+|...|.+++|+|+ + .+|++|+.|+.|++||++. .+...++..+.+
T Consensus 147 --------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~D~~v~lWd~~~-------~~~~~~~~~l~~ 210 (316)
T 3bg1_A 147 --------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI-KRFASGGCDNLIKLWKEEE-------DGQWKEEQKLEA 210 (316)
T ss_dssp --------TSSSSCBCCCEECCCCCC------CCSCCCCCC-CBEECCBTTSBCCEEEECT-------TSCEEEEECCBC
T ss_pred --------ccccCCcceEEEccccCCccccccccccCcccc-ceEEEecCCCeEEEEEeCC-------CCccceeeeccc
Confidence 012222333333332 3 4899999999999999852 122235667899
Q ss_pred CCCceEEEEeCCCC---CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 296 HQKEGYGLSWNPSL---NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 296 h~~~i~~~~~s~~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
|..+|.+++|+|++ ..+|+||+.|++|++||+++...... ....+.+|...|++++|+|+++.+++.+..
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW---SPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCC---BCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccch---hhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99999999999985 25899999999999999986321000 234456789999999999999988776543
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.2e-34 Score=264.05 Aligned_cols=292 Identities=19% Similarity=0.305 Sum_probs=211.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|||||+ +||+|+.|++|+|||... +++.++.+|.+.|++|+|+|+++ +||+++.|++|++|
T Consensus 22 ~a~spdg~-~las~~~d~~v~iWd~~~---------------~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vW 84 (577)
T 2ymu_A 22 VAFSPDGQ-TIASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW 84 (577)
T ss_dssp EEECTTSS-CEEEEETTSEEEEECTTS---------------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEECCC---------------CEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence 57999997 799999999999999643 67788999999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|.... .+ ..+.+| ...|.+++|+|+++.++ |+.+++|+......... .
T Consensus 85 d~~~~--------------~~-----------~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~-~ 136 (577)
T 2ymu_A 85 NRNGQ--------------LL-----------QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-T 136 (577)
T ss_dssp ETTSC--------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEE-C
T ss_pred ECCCC--------------EE-----------EEEECC--CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeec-c
Confidence 97441 11 123344 56799999999999887 89999999765433221 1
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeecc-----CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS-----DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
.+ ..+.....+.++............. .+..... .......+..+.+.+++..+.....|.....|..
T Consensus 137 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~---- 209 (577)
T 2ymu_A 137 GH--SSSVWGVAFSPDGQTIASASDDKTV-KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR---- 209 (577)
T ss_dssp CC--SSCEEEEEECTTSSCEEEEETTSEE-EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT----
T ss_pred CC--CCceeeeeeecCCccceecccccce-eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC----
Confidence 11 1123334444443211000000000 0000000 0011123556667777776666666666555532
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 311 (384)
.+. ......+|...|.+++|+|+++ +|++++.|+.|++||.. +. .+..+.+|...|++++|+|++ .
T Consensus 210 ~~~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~i~~w~~~---------~~--~~~~~~~~~~~v~~v~~~~d~-~ 275 (577)
T 2ymu_A 210 NGQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN---------GQ--LLQTLTGHSSSVNGVAFRPDG-Q 275 (577)
T ss_dssp TSC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTT---------SC--EEEEECCCSSCEEEEEECTTS-S
T ss_pred CCc-EEEEEecCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCC---------CC--EEEEEecCCCCEEEEEEcCCC-C
Confidence 222 2455678999999999999995 89999999999999963 32 456788999999999999998 7
Q ss_pred eEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+|++++.|+.|++||... + .+..+.+|...|++++|+|+++.+++.+
T Consensus 276 ~l~~~~~d~~i~~w~~~~-~-------~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNG-Q-------LLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEEEEETTSCEEEEETTS-C-------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCC-c-------EEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 999999999999999753 4 7788899999999999999999877654
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-34 Score=244.93 Aligned_cols=274 Identities=14% Similarity=0.171 Sum_probs=189.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+++.+||+|+.|++|++|++..... .....+..+.+|...|++++|+|++. +|++|+.|++|++|
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~w 92 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQ---------KFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKTLRLW 92 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETT---------EEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCc---------cccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence 468998766999999999999999864210 01234677889999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++. + ..+.+| ...|.+++|+|++..++ |+++++|++....+.. +.
T Consensus 93 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~-~~ 145 (319)
T 3frx_A 93 DVATGET-------------Y-----------QRFVGH--KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LL 145 (319)
T ss_dssp ETTTTEE-------------E-----------EEEECC--SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE-EC
T ss_pred ECCCCCe-------------e-----------EEEccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-Ee
Confidence 9987511 1 133445 67899999999999887 9999999987543322 12
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. ....+.+.|...... ++..+.....|...+.|.. .....
T Consensus 146 ~h~~--~v~~~~~~~~~~~~~-------------------------------~~~~l~s~~~d~~i~~wd~----~~~~~ 188 (319)
T 3frx_A 146 GHND--WVSQVRVVPNEKADD-------------------------------DSVTIISAGNDKMVKAWNL----NQFQI 188 (319)
T ss_dssp CCSS--CEEEEEECCC-------------------------------------CCEEEEEETTSCEEEEET----TTTEE
T ss_pred ccCC--cEEEEEEccCCCCCC-------------------------------CccEEEEEeCCCEEEEEEC----Ccchh
Confidence 2211 122333333221000 0011122222333322211 12223
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
...+.+|...|++++|+|+++ +|++|+.||.|++||++ .+ +.+..+.. ...|.+++|+|++ .+|+++
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~-~~~v~~~~~sp~~-~~la~~ 255 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLA--------AK--KAMYTLSA-QDEVFSLAFSPNR-YWLAAA 255 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETT--------TT--EEEEEEEC-CSCEEEEEECSSS-SEEEEE
T ss_pred heeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--cEEEEecC-CCcEEEEEEcCCC-CEEEEE
Confidence 455678999999999999995 99999999999999986 22 34455654 4679999999998 688887
Q ss_pred eCCCcEEEEecCCCCCCCccccceeee--------eccCCcEeEEEEecCCCccccccccc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIF--------TGHTAVVELELIERLTKKADPVCTLE 369 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~~c~~~ 369 (384)
+. ..+++|++.... .+..+ ..|...|.+++|+|+|+.+++.+...
T Consensus 256 ~~-~~i~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 256 TA-TGIKVFSLDPQY-------LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp ET-TEEEEEEETTEE-------EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred cC-CCcEEEEeCcCe-------eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 75 469999998764 33333 23567899999999999988765543
No 22
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-34 Score=250.88 Aligned_cols=240 Identities=10% Similarity=0.061 Sum_probs=175.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||+.+.. ++....+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus 17 ~~~s~~g~-~l~~~~~d~~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 17 HAFNSQRT-EFVTTTATNQVELYEQDGNG------------WKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVY 82 (377)
T ss_dssp CEECSSSS-EEECCCSSSCBCEEEEETTE------------EEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC
T ss_pred EEECCCCC-EEEEecCCCEEEEEEccCCc------------eEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence 57999997 89999999999999998621 256667789999999999999998 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..++.. . . ...+.+| ...|.+++|+|+++.++ |+.+++|++........
T Consensus 83 d~~~~~~~----------------~---~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-- 137 (377)
T 3dwl_C 83 EKRPDGTW----------------K---Q--TLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-- 137 (377)
T ss_dssp ------CC----------------C---C--EEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC--
T ss_pred EcCCCCce----------------e---e--eeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee--
Confidence 99875200 0 0 0122233 66799999999998877 88899998754321000
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
T Consensus 138 -------------------------------------------------------------------------------- 137 (377)
T 3dwl_C 138 -------------------------------------------------------------------------------- 137 (377)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEee-cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC----C----CCccceeeecCCCCceEEEEeCC
Q psy4577 237 IEIKIN-HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP----N----GECHPDLRLRGHQKEGYGLSWNP 307 (384)
Q Consensus 237 ~~~~~~-~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~----~~~~~~~~~~~h~~~i~~~~~s~ 307 (384)
...... |...|.+++|+|++. +|++++.|+.|++||++.......+ . .....+..+ +|...|++++|+|
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp 215 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP 215 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence 111123 788999999999995 9999999999999998532211000 0 012334455 8999999999999
Q ss_pred CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
++ .+|++++.||+|++||+++++.. ...+..+.+|...|++++|+|++..+++.
T Consensus 216 ~~-~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 216 SG-NALAYAGHDSSVTIAYPSAPEQP---PRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp TS-SCEEEEETTTEEC-CEECSTTSC---EEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred CC-CEEEEEeCCCcEEEEECCCCCCc---ceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 98 79999999999999999998710 00178889999999999999999876654
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.5e-33 Score=233.88 Aligned_cols=238 Identities=15% Similarity=0.177 Sum_probs=180.6
Q ss_pred eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577 43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW 122 (384)
Q Consensus 43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (384)
++..++.+|.+.|++++|+|+++ +|++++.||+|++||+.+++ .++ .+.+| ..
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~-------------~~~-----------~~~~~--~~ 56 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQV-------------EVR-----------SIQVT--ET 56 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTE-------------EEE-----------EEECC--SS
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-------------eeE-----------Eeecc--CC
Confidence 55677899999999999999999 88899999999999997741 111 22233 56
Q ss_pred CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
++.+++|+|+++.++ |+++++||..+......+..+..
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-------------------------------------- 98 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-------------------------------------- 98 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------------------------------
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC--------------------------------------
Confidence 789999999999887 99999999977655433333322
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP 278 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 278 (384)
.+.++.+++++..++....|...+.|... .+......+.+|...|.+++|+|.+..+|++|+.|++|++||++.
T Consensus 99 -~v~~~~~~~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-- 172 (304)
T 2ynn_A 99 -YIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-- 172 (304)
T ss_dssp -CEEEEEECSSSSEEEEEETTSCEEEEEGG---GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--
T ss_pred -cEEEEEEcCCCCEEEEECCCCeEEEEECC---CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--
Confidence 24445555555555555566655555321 122334556789999999999996546999999999999999862
Q ss_pred CCCCCCCCccceeeecCCCCceEEEEeCC--CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577 279 SKPDPNGECHPDLRLRGHQKEGYGLSWNP--SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE 356 (384)
Q Consensus 279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 356 (384)
... ......+|...+..++|+| ++ .+|++|+.|++|++||+++++ ++.++.+|...|++++|+
T Consensus 173 ------~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 173 ------STP-NFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS-------CVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp ------SSC-SEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEC
T ss_pred ------CCc-cceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc-------cceeeCCCCCCEEEEEEC
Confidence 221 2223346677899999987 55 699999999999999999988 999999999999999999
Q ss_pred cCCCcccccc
Q psy4577 357 RLTKKADPVC 366 (384)
Q Consensus 357 p~~~~~~~~c 366 (384)
|+++.+++.+
T Consensus 238 p~~~~l~s~s 247 (304)
T 2ynn_A 238 PTLPIIISGS 247 (304)
T ss_dssp SSSSEEEEEE
T ss_pred CCCCEEEEEc
Confidence 9999777654
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-33 Score=248.02 Aligned_cols=251 Identities=17% Similarity=0.210 Sum_probs=178.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.|++|+|||+.+ .+.+..+.+|...|.+++|+|++. +|++|+.|++|++|
T Consensus 156 v~~~~~~~-~l~sgs~D~~i~iwd~~~--------------~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 156 ISFDHSGK-LLASCSADMTIKLWDFQG--------------FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMW 219 (410)
T ss_dssp EEECTTSS-EEEEEETTSCCCEEETTS--------------SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCC--------------CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence 47999997 899999999999999976 467788899999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.++.. + ..+.+| ...|.++.|+|++..++ |+++++|++........+.
T Consensus 220 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~ 273 (410)
T 1vyh_C 220 EVQTGYC-------------V-----------KTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 (410)
T ss_dssp ETTTCCE-------------E-----------EEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ECCCCcE-------------E-----------EEEeCC--CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec
Confidence 9987511 1 123344 56788999999999887 8999999998766554444
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. ++.++.|.|+............. . ......+..+.....|...+.|+. .....
T Consensus 274 ~h~~--~v~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~g~~l~sgs~D~~i~iwd~----~~~~~ 330 (410)
T 1vyh_C 274 EHRH--VVECISWAPESSYSSISEATGSE--------------T---KKSGKPGPFLLSGSRDKTIKMWDV----STGMC 330 (410)
T ss_dssp CCSS--CEEEEEECCSCGGGGGGGCCSCC------------------------CCEEEEEETTSEEEEEET----TTTEE
T ss_pred CCCc--eEEEEEEcCcccccchhhhcccc--------------c---cccCCCCCEEEEEeCCCeEEEEEC----CCCce
Confidence 4432 24456666553211000000000 0 000001111222223333333321 12233
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
...+.+|...|++++|+|+++ +|++|+.||.|++||++ .+ ..+..+.+|...|++++|+|++ .+|+||
T Consensus 331 ~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~--------~~--~~~~~~~~h~~~v~~l~~~~~~-~~l~sg 398 (410)
T 1vyh_C 331 LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYK--------NK--RCMKTLNAHEHFVTSLDFHKTA-PYVVTG 398 (410)
T ss_dssp EEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCT--------TS--CCCEEEECCSSCEEEEEECSSS-SCEEEE
T ss_pred EEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--ceEEEEcCCCCcEEEEEEcCCC-CEEEEE
Confidence 556678999999999999995 89999999999999985 33 3456889999999999999998 699999
Q ss_pred eCCCcEEEEecC
Q psy4577 317 SDDHTICLWDIN 328 (384)
Q Consensus 317 s~Dg~i~iwd~~ 328 (384)
+.||+|++|+++
T Consensus 399 s~D~~i~vW~~r 410 (410)
T 1vyh_C 399 SVDQTVKVWECR 410 (410)
T ss_dssp ETTSEEEEEC--
T ss_pred eCCCcEEEEeCC
Confidence 999999999974
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=249.42 Aligned_cols=274 Identities=18% Similarity=0.235 Sum_probs=190.6
Q ss_pred CCCCCCCCceEEEe----------eCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEE
Q psy4577 1 VQWSPHNETILASS----------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 70 (384)
Q Consensus 1 v~fsp~~~~~lat~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s 70 (384)
++|+|+++.+||+| +.|+.|+|||+.+... .+.+.. ..|...|++++|+|++. +|++
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----------~~~~~~-~~~~~~v~~~~~s~~~~-~l~~ 84 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----------EKPIAS-LQVDSKFNDLDWSHNNK-IIAG 84 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----------CSCSCC-CCCSSCEEEEEECSSSS-CEEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----------CcEEEE-EecCCceEEEEECCCCC-eEEE
Confidence 58999997789999 8999999999986321 012222 35888999999999999 7789
Q ss_pred EecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeec
Q psy4577 71 VSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWK 145 (384)
Q Consensus 71 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~ 145 (384)
++.|+.|++||+..... .......+.+| ...|.+++|+|+ +..++ |+.|++||
T Consensus 85 ~~~dg~v~vw~~~~~~~--------------------~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANN--------------------AINSMARFSNH--SSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EESSSCEEEECCSSTTS--------------------CCCEEEECCCS--SSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EccCCeEEEeecccccc--------------------cccchhhccCC--ccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 99999999999976210 00011233344 668999999998 66666 89999999
Q ss_pred ccccc------cccee-ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577 146 KNTPF------LYDLV-MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY 218 (384)
Q Consensus 146 ~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 218 (384)
+.... ..... .......++.++.|.++. +..+.....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------------~~~l~~~~~ 186 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL------------------------------------AHVFASAGS 186 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC------------------------------------TTEEEEESS
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCC------------------------------------CcEEEEEcC
Confidence 97654 11110 000111122333333321 122222223
Q ss_pred cCcCCCCCCccCCCCceeEEEEeec------CCceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCCCccc
Q psy4577 219 DTDKGDFGGFGSVSGKIEIEIKINH------EGEVNRARYMPQNPCVIATKTPSS---DVLVFDYTKHPSKPDPNGECHP 289 (384)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~ 289 (384)
|.....|.. ...........| ...|.+++|+|++..++++++.|+ .|++||++. + ..+
T Consensus 187 dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~--------~-~~~ 253 (416)
T 2pm9_A 187 SNFASIWDL----KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN--------A-NTP 253 (416)
T ss_dssp SSCEEEEET----TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--------T-TSC
T ss_pred CCCEEEEEC----CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--------C-CCC
Confidence 333332211 111123333333 788999999999867999999999 999999962 2 134
Q ss_pred eeeec-CCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 290 DLRLR-GHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 290 ~~~~~-~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+..+. +|...|++++|+| ++ .+|++++.||+|++||+++++ ++..+.+|...|++++|+|+++....++
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE-------QLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC-------EEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred cEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc-------cceeecCCCCceEEEEECCCCCCEEEEE
Confidence 55677 8999999999999 77 799999999999999999988 9999999999999999999995433333
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.1e-34 Score=252.38 Aligned_cols=201 Identities=12% Similarity=0.142 Sum_probs=156.5
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|||.++.+||+|+.||+|+|||+.... ......+.+|.+.|++|+|+|.+..+|+||+.|++|++|
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 57999877799999999999999997622 244556679999999999998543388999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+++. .+.. ....+.....+.+++|+|++..++ |+.|++||+....+
T Consensus 193 d~~~~--------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----- 243 (435)
T 4e54_B 193 DFKGN--------------ILRV----------FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----- 243 (435)
T ss_dssp ETTSC--------------EEEE----------EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-----
T ss_pred eccCC--------------ceeE----------EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-----
Confidence 99763 1111 111222244577899999998887 88899988643211
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
T Consensus 244 -------------------------------------------------------------------------------- 243 (435)
T 4e54_B 244 -------------------------------------------------------------------------------- 243 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
..+.+|...|++++|+|+++.+|++|+.|+.|+|||++... ....+....+|..+|++++|+|+| .+|+|+
T Consensus 244 -~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~ 314 (435)
T 4e54_B 244 -WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-------GKASFLYSLPHRHPVNAACFSPDG-ARLLTT 314 (435)
T ss_dssp -CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC-------SSSCCSBCCBCSSCEEECCBCTTS-SEEEEE
T ss_pred -EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc-------ccceEEEeeeccccccceeECCCC-CeeEEE
Confidence 01125788899999999987799999999999999997321 112233456899999999999999 799999
Q ss_pred eCCCcEEEEecCCCC
Q psy4577 317 SDDHTICLWDINATP 331 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~ 331 (384)
+.||+|+|||++++.
T Consensus 315 ~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 315 DQKSEIRVYSASQWD 329 (435)
T ss_dssp ESSSCEEEEESSSSS
T ss_pred cCCCEEEEEECCCCc
Confidence 999999999999886
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=235.81 Aligned_cols=264 Identities=18% Similarity=0.274 Sum_probs=173.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.|++|+|||+.... .+.+..+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus 67 ~~~sp~g~-~l~s~s~D~~v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 67 VAWSPCGN-YLASASFDATTCIWKKNQDD------------FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVW 132 (345)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEECCC-------------EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEECCCCC-EEEEEECCCcEEEEEccCCC------------eEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEE
Confidence 47999997 89999999999999987521 356778899999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc--ce
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY--DL 154 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~--~~ 154 (384)
|+...+.. .....+.+| ...|.+++|+|++..++ |+++++|+....... ..
T Consensus 133 d~~~~~~~---------------------~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~ 189 (345)
T 3fm0_A 133 EVDEEDEY---------------------ECVSVLNSH--TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189 (345)
T ss_dssp EECTTSCE---------------------EEEEEECCC--CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred ECCCCCCe---------------------EEEEEecCc--CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence 99764110 011123344 56789999999999887 899999998654321 12
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
+..+. .++.++.|.|+.. .+..+. ....+.++..........+.... .....
T Consensus 190 ~~~h~--~~v~~l~~sp~g~----------~l~s~s----~D~~v~iW~~~~~~~~~~~~~~~------------~~~~~ 241 (345)
T 3fm0_A 190 LEGHE--STVWSLAFDPSGQ----------RLASCS----DDRTVRIWRQYLPGNEQGVACSG------------SDPSW 241 (345)
T ss_dssp ECCCS--SCEEEEEECTTSS----------EEEEEE----TTSCEEEEEEECTTCTTCCCCC---------------CEE
T ss_pred ecCCC--CceEEEEECCCCC----------EEEEEe----CCCeEEEeccccCCCCccceeec------------cCCcc
Confidence 22222 2234455555432 111111 12334444433211111000000 00001
Q ss_pred eeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 235 IEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 235 ~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
..+.... .|...|.+++|+|++. .|++++.|+.|++|+......... ...........+|...|++++|+|+++.+|
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQ-PTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTS-CCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred ceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcce-eeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 1122222 3889999999999996 899999999999999863211100 000011123468999999999999975699
Q ss_pred EEeeCCCcEEEEecCCCC
Q psy4577 314 LSASDDHTICLWDINATP 331 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~ 331 (384)
||||.||+|++|++.+.+
T Consensus 320 aS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 320 ASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEETTSCEEEEEECC--
T ss_pred EEcCCCCcEEEEEecCCC
Confidence 999999999999999877
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=235.17 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=175.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. ++|+|+.|++|+|||+.+ .+.+..+.+|...+.+++|+|+++ +|++++.|+.|++|
T Consensus 86 ~~~~~~~~-~l~s~s~D~~i~lWd~~~--------------~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 86 VDISHTLP-IAASSSLDAHIRLWDLEN--------------GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIF 149 (321)
T ss_dssp EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEE
T ss_pred EEECCCCC-EEEEEeCCCcEEEEECCC--------------CCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence 46889987 899999999999999986 467777888999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
++..++. .. .+..| ...+.+++|+|+++.++ |+.+++||+.+......+.
T Consensus 150 ~~~~~~~-------------~~-----------~~~~~--~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 203 (321)
T 3ow8_A 150 GVESGKK-------------EY-----------SLDTR--GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203 (321)
T ss_dssp ETTTCSE-------------EE-----------EEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EcCCCce-------------eE-----------EecCC--CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 9977511 11 11122 45688999999999888 8999999998766544443
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. ++.++.|.|+ +..+.....|...+.|.. .....
T Consensus 204 ~h~~--~v~~l~~spd-------------------------------------~~~l~s~s~dg~i~iwd~----~~~~~ 240 (321)
T 3ow8_A 204 GHAM--PIRSLTFSPD-------------------------------------SQLLVTASDDGYIKIYDV----QHANL 240 (321)
T ss_dssp CCSS--CCCEEEECTT-------------------------------------SCEEEEECTTSCEEEEET----TTCCE
T ss_pred ccCC--ceeEEEEcCC-------------------------------------CCEEEEEcCCCeEEEEEC----CCcce
Confidence 3322 2334444443 333333333333333321 11222
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
...+.+|...|.+++|+|++. +|++|+.|++|++||++ .+ ..+..+.+|...|.+++|+|++ .+|+++
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~--------~~--~~~~~~~~h~~~v~~v~~s~~g-~~l~s~ 308 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVG--------TR--TCVHTFFDHQDQVWGVKYNGNG-SKIVSV 308 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TT--EEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred eEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCC--------CC--EEEEEEcCCCCcEEEEEECCCC-CEEEEE
Confidence 455678999999999999995 99999999999999986 33 3566889999999999999998 799999
Q ss_pred eCCCcEEEEecC
Q psy4577 317 SDDHTICLWDIN 328 (384)
Q Consensus 317 s~Dg~i~iwd~~ 328 (384)
+.||+|++||..
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999973
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.6e-32 Score=231.87 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=183.5
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+++.+|||||.|++|+|||+.... .........+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---------~~~~~~~~~l~~h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDE---------TNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLW 113 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSS---------SCSEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCC---------cccceeeEEEeCCCCCEEEEEECCCCC-EEEEEcccccceEE
Confidence 57999976699999999999999997522 111245677899999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee-
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV- 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~- 155 (384)
+...... ... . ......+..+.+++++..++ |+.+++|+..........
T Consensus 114 ~~~~~~~-------------~~~-----------~--~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 114 DLTTGTT-------------TRR-----------F--VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp ETTTTEE-------------EEE-----------E--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred eecccce-------------eee-----------e--cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 9876411 000 0 01134566788899988877 899999998654332211
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
..+.. ....+.+.++. ....+.....|.....| +.....
T Consensus 168 ~~~~~--~v~~~~~~~~~-----------------------------------~~~~~~s~~~d~~i~i~----d~~~~~ 206 (340)
T 4aow_A 168 ESHSE--WVSCVRFSPNS-----------------------------------SNPIIVSCGWDKLVKVW----NLANCK 206 (340)
T ss_dssp SSCSS--CEEEEEECSCS-----------------------------------SSCEEEEEETTSCEEEE----ETTTTE
T ss_pred ccccC--cccceEEccCC-----------------------------------CCcEEEEEcCCCEEEEE----ECCCCc
Confidence 11111 11112221111 00111111222222222 111223
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
......+|.+.|++++|+|+++ +|++|+.||.|++||++ .. .++..+.+ ...|.+++|+|++ .+++
T Consensus 207 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~--------~~--~~~~~~~~-~~~v~~~~~~~~~--~~~~ 272 (340)
T 4aow_A 207 LKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLN--------EG--KHLYTLDG-GDIINALCFSPNR--YWLC 272 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETT--------TT--EEEEEEEC-SSCEEEEEECSSS--SEEE
T ss_pred eeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEec--------cC--ceeeeecC-CceEEeeecCCCC--ceee
Confidence 3556678999999999999995 99999999999999986 22 34445554 4579999999985 5677
Q ss_pred eeCCCcEEEEecCCCCCCCc--cccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 316 ASDDHTICLWDINATPKENR--VIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
++.|+.|++||+++...... .........+|...|++++|+|+++.+++.+..
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 78899999999987651000 000122234689999999999999988776543
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=233.01 Aligned_cols=275 Identities=12% Similarity=0.089 Sum_probs=202.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.||.|+|||+.+ .+.+..+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus 38 ~~~s~~~~-~l~~~~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 38 VKYNKEGD-LLFSCSKDSSASVWYSLN--------------GERLGTLDGHTGTIWSIDVDCFTK-YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECTTSC-EEEEEESSSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEE
T ss_pred EEEcCCCC-EEEEEeCCCEEEEEeCCC--------------chhhhhhhhcCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence 47999997 899999999999999976 367788899999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c-----ceeeeeccccccc
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N-----EEYKIWKKNTPFL 151 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d-----~~v~~w~~~~~~~ 151 (384)
|+.+++. +..+. ....+.+++|+|++..++ + +.+++|+......
T Consensus 102 d~~~~~~-------------~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 102 DVSNGQC-------------VATWK--------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp ETTTCCE-------------EEEEE--------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred ECCCCcE-------------EEEee--------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 9987521 11111 255788999999999887 4 8999999866543
Q ss_pred cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
...+...... +...+.. ......+..+.+++++..+.+...|.....|.. .
T Consensus 155 ~~~~~~~~~~-~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~---~ 205 (369)
T 3zwl_B 155 THELTKVSEE-PIHKIIT-------------------------HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV---S 205 (369)
T ss_dssp TCCEEEECSS-CSEEEEC-------------------------CTTCCCEEEEEECGGGCEEEEEETTSEEEEEET---T
T ss_pred ceeecccccc-eeeeccC-------------------------CcCccceeEEEEcCCCCEEEEEcCCCEEEEEEC---C
Confidence 2221111100 0000000 001113444555555555555444544444322 1
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 311 (384)
...........|...|.+++|+|++. +|++++.||.|++||++ .+. .+..+. +...+.+++|+|++ .
T Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~--------~~~--~~~~~~-~~~~~~~~~~~~~~-~ 272 (369)
T 3zwl_B 206 NNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVS--------TLQ--VLKKYE-TDCPLNTAVITPLK-E 272 (369)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TCC--EEEEEE-CSSCEEEEEECSSS-S
T ss_pred CCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECC--------CCc--eeeeec-CCCCceeEEecCCC-c
Confidence 11334556667999999999999995 99999999999999986 333 333444 77889999999998 7
Q ss_pred eEEEeeCCC--------------cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 312 YLLSASDDH--------------TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 312 ~l~s~s~Dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
++++++.++ .+++||+.+++ ++..+.+|...|++++|+|+++.+++.+.
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-------EIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp EEEEEECCC-------------CEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeecCCCceEEEEecCCCcceeEEEecCCCc-------chhheecccCcEEEEEECCCCCEEEEEcC
Confidence 999999998 89999999998 99999999999999999999998776644
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-32 Score=231.52 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=181.0
Q ss_pred CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577 42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE 121 (384)
Q Consensus 42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (384)
..+..++.||.+.|++++|+|++..+|+||+.|++|++|++..... ........+.+| .
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-------------------~~~~~~~~~~~h--~ 65 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-------------------KFGVPVRSFKGH--S 65 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-------------------EEEEEEEEEECC--S
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-------------------cccccceEEeCC--c
Confidence 3566788999999999999998755899999999999999865310 000111244456 6
Q ss_pred cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577 122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN 197 (384)
Q Consensus 122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (384)
..|.+++|+|+++.++ |+++++||+.+......+..+..
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~------------------------------------- 108 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS------------------------------------- 108 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-------------------------------------
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-------------------------------------
Confidence 7899999999999887 99999999987665444443322
Q ss_pred eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCC-----cEEEEEeCCCcEEEE
Q psy4577 198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP-----CVIATKTPSSDVLVF 272 (384)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-----~~l~s~s~dg~i~iw 272 (384)
.+.++.+++++..+.....|...+.|.. .+. ......+|...|.+++|+|... .++++++.|+.|++|
T Consensus 109 --~v~~~~~~~~~~~l~s~s~D~~i~vwd~----~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w 181 (319)
T 3frx_A 109 --DVMSVDIDKKASMIISGSRDKTIKVWTI----KGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181 (319)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEET----TSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred --cEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence 2334444444444445555555554432 122 3556678999999999999532 389999999999999
Q ss_pred ecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeE
Q psy4577 273 DYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL 352 (384)
Q Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 352 (384)
|++ .. .....+.+|...|.+++|+|++ .+|++|+.||+|++||+++++ ++.++..+ ..|.+
T Consensus 182 d~~--------~~--~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 182 NLN--------QF--QIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ-DEVFS 242 (319)
T ss_dssp ETT--------TT--EEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------EEEEEECC-SCEEE
T ss_pred ECC--------cc--hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------EEEEecCC-CcEEE
Confidence 986 22 3455788999999999999998 799999999999999999987 78888754 67999
Q ss_pred EEEecCCCcccccc
Q psy4577 353 ELIERLTKKADPVC 366 (384)
Q Consensus 353 ~~~sp~~~~~~~~c 366 (384)
++|+|++..+++.+
T Consensus 243 ~~~sp~~~~la~~~ 256 (319)
T 3frx_A 243 LAFSPNRYWLAAAT 256 (319)
T ss_dssp EEECSSSSEEEEEE
T ss_pred EEEcCCCCEEEEEc
Confidence 99999998776553
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=234.36 Aligned_cols=253 Identities=17% Similarity=0.267 Sum_probs=158.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.|++|+|||+..... .....+.+..+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus 64 v~~sp~~~-~las~s~D~~v~iw~~~~~~~-------~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iw 134 (330)
T 2hes_X 64 VAWRPHTS-LLAAGSFDSTVSIWAKEESAD-------RTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIW 134 (330)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEC--------------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEE
T ss_pred EEECCCCC-EEEEEeCCCcEEEEEcccCcC-------ccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence 47999997 899999999999999864110 0012356778899999999999999999 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc--cccce
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP--FLYDL 154 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~--~~~~~ 154 (384)
|+..... .......+.+| ...|.+++|+|++..++ |+++++|+.... .....
T Consensus 135 d~~~~~~--------------------~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~ 192 (330)
T 2hes_X 135 ETDESGE--------------------EYECISVLQEH--SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192 (330)
T ss_dssp ECCTTCC--------------------CCEEEEEECCC--SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred eccCCCC--------------------CeEEEEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE
Confidence 9953200 00011233445 56799999999999887 999999997653 22222
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
+..+.. ++.++.|.|+... ..+..+. ....+.++.+.-... .....
T Consensus 193 ~~~h~~--~v~~~~~~~~~~~--------~~l~s~s----~D~~v~iw~~~~~~~--------------------~~~~~ 238 (330)
T 2hes_X 193 LNGHEG--TVWSSDFDKTEGV--------FRLCSGS----DDSTVRVWKYMGDDE--------------------DDQQE 238 (330)
T ss_dssp ECCCSS--CEEEEEECCSSSS--------CEEEEEE----TTSCEEEEEEEEECT--------------------TSCEE
T ss_pred ccCCCC--cEEEEEecCCCCe--------eEEEEEe----CCCeEEEEEecCCCc--------------------cccce
Confidence 223322 2334444443110 0111111 122233333320000 00000
Q ss_pred -eeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCCCC-ceEEEEeCC--C
Q psy4577 235 -IEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGHQK-EGYGLSWNP--S 308 (384)
Q Consensus 235 -~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~-~i~~~~~s~--~ 308 (384)
....... .|...|.+++|++++ +|++++.||.|+|||.. .+...... .+.+|.. .|.+++|+| +
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~--------~~~~~~~~~~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEV--------DGEWKVFAKRALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEE--------TTEEEEEEEESCTTTTSCEEEEEEC----
T ss_pred eEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcC--------CCceEEEeccccccccceEEEEEEecCCC
Confidence 1122222 388999999999765 78999999999999985 33322222 3467887 899999999 6
Q ss_pred CCCeEEEeeCCCcEEEEecCC
Q psy4577 309 LNGYLLSASDDHTICLWDINA 329 (384)
Q Consensus 309 ~~~~l~s~s~Dg~i~iwd~~~ 329 (384)
+ .+||||+.||+|+|||++.
T Consensus 309 ~-~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 309 K-TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp --CCEEEEETTSEEEEEEC--
T ss_pred c-eEEEEecCCCcEEEEEecc
Confidence 6 7999999999999999875
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-32 Score=237.31 Aligned_cols=262 Identities=10% Similarity=0.118 Sum_probs=169.3
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec------CCeEEEEEcc
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE------DNIMQILSVV 83 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~------D~~i~vwd~~ 83 (384)
+++.++.+.....|++... ...+|...|++++|+|||+ +||+||. |++|++|+..
T Consensus 18 ~~~~~~g~~~~~~w~~p~~------------------~p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT------------------APACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSC
T ss_pred eEEecCCCccccccCCCCC------------------CcccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECC
Confidence 3455555667788887531 1147999999999999999 8889998 5667777665
Q ss_pred cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeecccc
Q psy4577 84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHAL 160 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~ 160 (384)
.+.. ... +.....+| ...|.+++|+|++..++ +++|++||+.+...........
T Consensus 79 ~~~~-------------------~~~-~~~~~~~~--~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~- 135 (357)
T 4g56_B 79 EGAP-------------------NES-LCTAGVQT--EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAK- 135 (357)
T ss_dssp C----------------------CGG-GCSEEEEC--SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEE-
T ss_pred CCCc-------------------cee-EecccCCC--CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeecc-
Confidence 4311 011 11122233 66799999999998777 9999999986653321110000
Q ss_pred cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577 161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK 240 (384)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 240 (384)
..+...|.++.+++++..+.....|...+.|+. ........+
T Consensus 136 ----------------------------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~----~~~~~~~~~ 177 (357)
T 4g56_B 136 ----------------------------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL----SQKAVLKSY 177 (357)
T ss_dssp ----------------------------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEET----TTTEEEEEE
T ss_pred ----------------------------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCcEEEEE
Confidence 001113555666666666666666665555422 223345666
Q ss_pred eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577 241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH 320 (384)
Q Consensus 241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg 320 (384)
.+|...|++++|+|++..++++++.||.|++||++ .+.......+..|...+++++|+|++..+|++|+.|+
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~--------~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR--------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT--------SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECC--------CCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 78999999999999987789999999999999997 4444344455667889999999998757899999999
Q ss_pred cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
.|++||+++++ ++.++.+|...|++++|+|++..+.+.+
T Consensus 250 ~i~~wd~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 250 NVSLVNIKNPD-------SAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CEEEEESSCGG-------GCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred ceeEEECCCCc-------EeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 99999999988 8999999999999999999987544443
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=235.09 Aligned_cols=270 Identities=13% Similarity=0.220 Sum_probs=190.3
Q ss_pred CCCCCCC--CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~--~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~ 78 (384)
|+|+|++ ..+||+|+.||.|+|||+.+.+ ..+...+.+|.+.|++++|+|+++ +|++++.|++|+
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~ 111 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------------QTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDKTAK 111 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTS------------CEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCC------------ceeEEEeccccCCEEEEEECcCCC-EEEEEcCCCcEE
Confidence 4799995 3489999999999999998522 245577889999999999999999 788999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE--ecCceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW--LPDVTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+.+++. . .+.+| ...|.+++| +|++..++ |+.+++||+......
T Consensus 112 iwd~~~~~~-------------~------------~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 112 MWDLSSNQA-------------I------------QIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEETTTTEE-------------E------------EEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred EEEcCCCCc-------------e------------eeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 999987411 1 11223 677999999 88888776 899999999876554
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
..+..+. .+.++.+... .+..+.. .+.+.++.+. ..
T Consensus 165 ~~~~~~~---~~~~~~~~~~------------~~~~~~~----~~~i~~~~~~----------------~~--------- 200 (368)
T 3mmy_A 165 MVLQLPE---RCYCADVIYP------------MAVVATA----ERGLIVYQLE----------------NQ--------- 200 (368)
T ss_dssp EEEECSS---CEEEEEEETT------------EEEEEEG----GGCEEEEECS----------------SS---------
T ss_pred EEEecCC---CceEEEecCC------------eeEEEeC----CCcEEEEEec----------------cc---------
Confidence 4333221 1222222111 1111111 1112222221 00
Q ss_pred CceeEEEEeecCCceEEEEEcCCCC---cEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCC----------
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQNP---CVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQK---------- 298 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~---------- 298 (384)
..........+...+.++++.++.. ..+++++.||.|++||++. ... .....+.+|..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 201 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP--------PNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC--------SCHHHHSEEEECSEEC----CCCEE
T ss_pred cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC--------CCccccceeeeeeeccccccccccc
Confidence 0111111122345556666665442 2399999999999999973 222 45567777776
Q ss_pred --ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577 299 --EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK 370 (384)
Q Consensus 299 --~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~ 370 (384)
+|++++|+|++ .+|++|+.||.|++||+++++ ++..+.+|..+|++++|+|+++.+++.+..++
T Consensus 273 ~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 273 IYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART-------KLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp ECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-------EEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc-------EEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 79999999998 799999999999999999988 89999999999999999999999888765443
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-32 Score=240.65 Aligned_cols=295 Identities=13% Similarity=0.029 Sum_probs=203.2
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.|+|++. +||+|+.|+.|+|||+.+ .+....+.+|.+.|++++|+|++. +|++++.|++|++||
T Consensus 104 ~~~~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 104 TAKLQMR-RFILGTTEGDIKVLDSNF--------------NLQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWS 167 (420)
T ss_dssp EECSSSC-EEEEEETTSCEEEECTTS--------------CEEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred EEecCCC-EEEEEECCCCEEEEeCCC--------------cceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence 4788887 799999999999999986 366777789999999999999999 888999999999999
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
+.+++.. ..+.+| ...|.+++|+|+++.++ |+++++||+........+..
T Consensus 168 ~~~~~~~------------------------~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 168 VKDGSNP------------------------RTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp TTTCCCC------------------------EEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred CCCCcCc------------------------eEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 9875211 123344 67899999999998887 89999999987665444433
Q ss_pred cc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 158 HA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 158 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
+. ...+...+.+.+...... .......+..+.+++++..+.+...|.....|+. ..+...
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~---~~~~~~ 282 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQL----------------HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV---FSKEQT 282 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSC----------------GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET---TTCCEE
T ss_pred CCCCCCCccEEEEecCCccee----------------eecccCcccceEEcCCCCEEEEEcCCCeEEEEEC---CCCcee
Confidence 21 111223333333221100 0001112333445555555555555555444422 122333
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEE
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s 315 (384)
......|...|.+++|+|+++.+|++|+.||.|++||++ .+. .++..+.+ |...|.++.|. ++ .+|++
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~--------~~~-~~~~~~~~~~~~~v~~~~~~-~~-~~l~s 351 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR--------SPE-CPVGEFLINEGTPINNVYFA-AG-ALFVS 351 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT--------CTT-SCSEEEEESTTSCEEEEEEE-TT-EEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC--------CCc-CchhhhhccCCCCceEEEeC-CC-CEEEE
Confidence 333446889999999999996699999999999999996 222 24556666 66788888665 66 69999
Q ss_pred eeCCCcEEEEecCCCCCCCcc--ccceeeeeccCCcEeEEEEecCCC---cccccccc
Q psy4577 316 ASDDHTICLWDINATPKENRV--IDAKTIFTGHTAVVELELIERLTK---KADPVCTL 368 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~---~~~~~c~~ 368 (384)
++.||+|++||+......... ......+.+|...|.+++|+|+++ .+.++...
T Consensus 352 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 352 SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 999999999999875321110 113334567889999999999999 55555443
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=236.64 Aligned_cols=283 Identities=10% Similarity=0.064 Sum_probs=188.8
Q ss_pred CCCCCCCCceEEEeeC---CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC---CCcEEEEEecC
Q psy4577 1 VQWSPHNETILASSGT---DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWVICSVSED 74 (384)
Q Consensus 1 v~fsp~~~~~lat~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~---~~~~l~s~s~D 74 (384)
|+|+|++..++++|+. |+.|+|||+.+.. .......+|...|++++|+|+ +. +|++++.|
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~d 89 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------------LKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFG 89 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------------EEEEEEEEESSCEEEEECTTCCTTTC-CEEEEETT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------------ccceeeecccCcEEEEEEcCCCCCCc-eEEEecCC
Confidence 4799999877788877 9999999998621 222233478999999999999 46 78899999
Q ss_pred CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE------ecCceeee----cceeeee
Q psy4577 75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW------LPDVTRVI----NEEYKIW 144 (384)
Q Consensus 75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~----d~~v~~w 144 (384)
+.|++||+..++. ....+.+| ...|.++.| +|+++.++ |+.+++|
T Consensus 90 g~i~iwd~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 90 GNLHIWNLEAPEM-----------------------PVYSVKGH--KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp SCEEEECTTSCSS-----------------------CSEEECCC--SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred CeEEEEeCCCCCc-----------------------cEEEEEec--ccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 9999999987520 01122334 566788854 67888877 8999999
Q ss_pred cccccc-ccceeecccc--cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577 145 KKNTPF-LYDLVMTHAL--EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD 221 (384)
Q Consensus 145 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 221 (384)
|+.... ....+..+.. ..++.++.+ ...+++++..+.....|..
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------------------~~~~~~~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAF---------------------------------GNAYNQEERVVCAGYDNGD 191 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEE---------------------------------ECCCC-CCCEEEEEETTSE
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEE---------------------------------EeccCCCCCEEEEEccCCe
Confidence 997754 2222222111 011112221 1112233333333333333
Q ss_pred CCCCCCccCCCCceeEEEEeecCCceEEEEEcC---CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc---eeeecC
Q psy4577 222 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP---QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP---DLRLRG 295 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~ 295 (384)
...|... .+. ......|...|.+++|+| ++. +|++++.||.|++||++. +.... ...+.+
T Consensus 192 i~i~d~~---~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 192 IKLFDLR---NMA--LRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRT--------QHPTKGFASVSEKA 257 (357)
T ss_dssp EEEEETT---TTE--EEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEE--------EETTTEEEEEEEEC
T ss_pred EEEEECc---cCc--eeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcC--------CCcccceeeeccCC
Confidence 3322210 111 234467899999999999 775 899999999999999972 22211 123448
Q ss_pred CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC------------ccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577 296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN------------RVIDAKTIFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
|...|++++|+|+++.+|++|+.||.|++||++...... ....++..+.+|...|++++|+|+++.++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 999999999999983389999999999999998754210 01135777889999999999999999987
Q ss_pred cccccc
Q psy4577 364 PVCTLE 369 (384)
Q Consensus 364 ~~c~~~ 369 (384)
..+..+
T Consensus 338 ~s~~~d 343 (357)
T 3i2n_A 338 VCSSFD 343 (357)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 444333
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-31 Score=253.00 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=189.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++..+||||+.|++|+|||+..... ........+.+|...|.+++|+|+++ +|+||+.|++|++|
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---------~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDK---------AYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGELRLW 457 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTT---------CSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCc---------ccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEE
Confidence 468998877999999999999999975220 11244567889999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++ .. ..+.+| ...|.+++|+|+++.++ |++|++||...........
T Consensus 458 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 458 DLAAGV-------------ST-----------RRFVGH--TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp ETTTTE-------------EE-----------EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred ECCCCc-------------ce-----------eEEeCC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 997741 11 133445 66799999999999887 9999999975443222111
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCC--cccccccccCcCCCCCCccCCCCc
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNED--AQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
... .+...+.++.+++++ ..+.....|...+.|+. ...
T Consensus 512 ~~~------------------------------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~----~~~ 551 (694)
T 3dm0_A 512 GGE------------------------------------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL----SNC 551 (694)
T ss_dssp STT------------------------------------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET----TTC
T ss_pred CCC------------------------------------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC----CCC
Confidence 100 000112333333322 12233334444443322 122
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
.....+.+|.+.|++++|+|++. +|++|+.||.|++||++ .+. .+..+. +...|.+++|+|++ .+|+
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~--------~~~--~~~~~~-~~~~v~~~~~sp~~-~~l~ 618 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLA--------EGK--KLYSLE-ANSVIHALCFSPNR-YWLC 618 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETT--------TTE--EEECCB-CSSCEEEEEECSSS-SEEE
T ss_pred cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECC--------CCc--eEEEec-CCCcEEEEEEcCCC-cEEE
Confidence 23456678999999999999995 99999999999999996 332 344444 44679999999997 5666
Q ss_pred EeeCCCcEEEEecCCCCCCCccccceeeeecc-------------------CCcEeEEEEecCCCccccccccc
Q psy4577 315 SASDDHTICLWDINATPKENRVIDAKTIFTGH-------------------TAVVELELIERLTKKADPVCTLE 369 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-------------------~~~v~~~~~sp~~~~~~~~c~~~ 369 (384)
++ .|+.|+|||+++++ .+..+..+ ...+++++|||+++.+++.+...
T Consensus 619 ~~-~~~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 619 AA-TEHGIKIWDLESKS-------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EE-ETTEEEEEETTTTE-------EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EE-cCCCEEEEECCCCC-------ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 55 56779999999886 55544322 12478999999999988765433
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.5e-32 Score=231.75 Aligned_cols=232 Identities=15% Similarity=0.168 Sum_probs=170.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|++||+.+.. ........+.+|.+.|.++.|++++. +++++.|++|++|
T Consensus 103 ~~~s~~~~-~l~s~~~d~~v~iw~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~w 169 (340)
T 1got_B 103 CAYAPSGN-YVACGGLDNICSIYNLKTRE----------GNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALW 169 (340)
T ss_dssp EEECTTSS-EEEEEETTCEEEEEETTTCS----------BSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEE
T ss_pred EEECCCCC-EEEEEeCCCeEEEEECccCC----------CcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEE
Confidence 46899997 89999999999999997522 12356677889999999999999876 6799999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++ .+ ..+.+| ...|.+++|+|++..++ |+++++||+........+.
T Consensus 170 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 170 DIETGQ-------------QT-----------TTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp ETTTTE-------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred ECCCCc-------------EE-----------EEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 997751 11 123344 56799999999998887 9999999997765443333
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. .+..+.+++++..+.....|...+.|+.. ....
T Consensus 224 ~h~~---------------------------------------~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----~~~~ 260 (340)
T 1got_B 224 GHES---------------------------------------DINAICFFPNGNAFATGSDDATCRLFDLR----ADQE 260 (340)
T ss_dssp CCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEETT----TTEE
T ss_pred CCcC---------------------------------------CEEEEEEcCCCCEEEEEcCCCcEEEEECC----CCcE
Confidence 3221 23444444444444444455544444221 1111
Q ss_pred EEEEe--ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 237 IEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 237 ~~~~~--~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
..... .+...|.+++|+|+++ +|++|+.||.|++||+. .+ ..+..+.+|..+|.+++|+|++ .+|+
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~s~dg-~~l~ 328 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDAL--------KA--DRAGVLAGHDNRVSCLGVTDDG-MAVA 328 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECTTS-SCEE
T ss_pred EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcc--------cC--cEeeEeecCCCcEEEEEEcCCC-CEEE
Confidence 22211 2334799999999995 99999999999999985 22 3456889999999999999998 7999
Q ss_pred EeeCCCcEEEEe
Q psy4577 315 SASDDHTICLWD 326 (384)
Q Consensus 315 s~s~Dg~i~iwd 326 (384)
||+.||+|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-32 Score=237.40 Aligned_cols=243 Identities=19% Similarity=0.272 Sum_probs=172.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|++|+|||+.+ .+.+..+.+|...|++++|+|++. .|++++.|++|++|
T Consensus 129 v~~s~dg~-~l~s~~~d~~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iw 192 (393)
T 1erj_A 129 VCFSPDGK-FLATGAEDRLIRIWDIEN--------------RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIW 192 (393)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEcCCCeEEEEECCC--------------CcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEE
Confidence 47999997 799999999999999986 467788899999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+.+++. ...+ .....+.+++|+| ++..++ |+.+++||..+......+
T Consensus 193 d~~~~~~-------------~~~~--------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 193 DLRTGQC-------------SLTL--------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp ETTTTEE-------------EEEE--------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ECCCCee-------------EEEE--------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 9977511 1110 1144688999999 777776 899999998776543322
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC----
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV---- 231 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---- 231 (384)
....... ..+...+.++.+++++..+.....|...+.|+.....
T Consensus 246 ~~~~~~~--------------------------------~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 246 DSENESG--------------------------------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp C--------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred cccccCC--------------------------------CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 1100000 0001123334444444444333344433333221100
Q ss_pred ----CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577 232 ----SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP 307 (384)
Q Consensus 232 ----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 307 (384)
..........+|...|.+++|+|++. +|++|+.|+.|++||++ .+ .++..+.+|...|.+++|++
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~--------~~--~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK--------SG--NPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECS
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECC--------CC--eEEEEECCCCCCEEEEEecC
Confidence 01122445668999999999999995 99999999999999986 33 35668899999999999886
Q ss_pred ------CCCCeEEEeeCCCcEEEEecCCC
Q psy4577 308 ------SLNGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 308 ------~~~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
++ .+|+||+.||+|+||+++..
T Consensus 363 ~~~~~p~~-~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEY-NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTC-EEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCC-CEEEEECCCCcEEECccccc
Confidence 56 69999999999999998754
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.8e-32 Score=237.24 Aligned_cols=273 Identities=14% Similarity=0.120 Sum_probs=190.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC----C---CcEEEEEec
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN----E---PWVICSVSE 73 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~----~---~~~l~s~s~ 73 (384)
|+|+| . +||+|+.||+|+|||+..... ..+......+.+|...|++++|+|+ + . +|++++.
T Consensus 22 ~~~~~--~-~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~ 89 (397)
T 1sq9_A 22 VSACN--S-FTVSCSGDGYLKVWDNKLLDN--------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSF 89 (397)
T ss_dssp EEECS--S-EEEEEETTSEEEEEESBCCTT--------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEET
T ss_pred EEecC--C-eEEEEcCCCEEEEEECCCccc--------ccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcC
Confidence 46888 3 899999999999999986210 0112357777899999999999999 8 7 7889999
Q ss_pred CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeee---ccCeeEEEEe----cCcee-ee----ccee
Q psy4577 74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL---EWPSLTAQWL----PDVTR-VI----NEEY 141 (384)
Q Consensus 74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~----~~~~~-~~----d~~v 141 (384)
|+.|++||+..++.. .......+..|.. ...|.+++|+ |++.. ++ ++.+
T Consensus 90 dg~i~iw~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 90 SGDLLFYRITREDET-------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 150 (397)
T ss_dssp TSCEEEEEEEECTTT-------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred CCCEEEEEccCCccc-------------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE
Confidence 999999999875210 0000112222311 3678999999 99988 76 8999
Q ss_pred eeecccc------ccccc-----eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCC
Q psy4577 142 KIWKKNT------PFLYD-----LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNED 210 (384)
Q Consensus 142 ~~w~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 210 (384)
++|++.. ..... .+... ..........+..+.+++++
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGT--------------------------------VESPMTPSQFATSVDISERG 198 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEE--------------------------------ECCSSSSCCCCCEEEECTTS
T ss_pred EEEeCCccccccccceeeccCcceeeee--------------------------------eccccCCCCCceEEEECCCc
Confidence 9999876 33322 11100 00000011123344444444
Q ss_pred cccccccccCcCCCCCCccCCCCceeEEEEee---c---CCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCC
Q psy4577 211 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN---H---EGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKP 281 (384)
Q Consensus 211 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~ 281 (384)
.+.....|.....|.. ........... | ...|.+++|+|++. +|++++.| |.|++||++
T Consensus 199 -~l~~~~~dg~i~i~d~----~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~------ 266 (397)
T 1sq9_A 199 -LIATGFNNGTVQISEL----STLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETE------ 266 (397)
T ss_dssp -EEEEECTTSEEEEEET----TTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETT------
T ss_pred -eEEEEeCCCcEEEEEC----CCCceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECC------
Confidence 3334444444433322 11223445556 8 99999999999995 99999999 999999986
Q ss_pred CCCCCccceeeecC-------------CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee----
Q psy4577 282 DPNGECHPDLRLRG-------------HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT---- 344 (384)
Q Consensus 282 ~~~~~~~~~~~~~~-------------h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---- 344 (384)
.+ .++..+.+ |...|.+++|+|++ .+|++++.||.|++||+++++ ++..+.
T Consensus 267 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~ 334 (397)
T 1sq9_A 267 --FG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE-------RITTLNMHCD 334 (397)
T ss_dssp --TC--CEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE-------EEEEEECCGG
T ss_pred --CC--cccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCc-------eeEEEecccC
Confidence 33 34567777 99999999999998 799999999999999999987 888888
Q ss_pred --cc---------------CCcEeEEEEecCCC
Q psy4577 345 --GH---------------TAVVELELIERLTK 360 (384)
Q Consensus 345 --~h---------------~~~v~~~~~sp~~~ 360 (384)
+| ...|++++|+|++.
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 335 DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccchhhhhccccccccccCCceeEEEeccccc
Confidence 78 99999999999983
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=242.83 Aligned_cols=292 Identities=10% Similarity=0.069 Sum_probs=194.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||+.... .....+..+.+|.+.|++++|+|++..+|++++.|++|++|
T Consensus 73 ~~~s~~~~-~l~~~~~dg~v~vw~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 73 LDWSHNNK-IIAGALDNGSLELYSTNEAN----------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp EEECSSSS-CEEEEESSSCEEEECCSSTT----------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred EEECCCCC-eEEEEccCCeEEEeeccccc----------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 47999997 79999999999999997521 11246777889999999999999943388999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+...+..... ..........+| ...+.+++|+|+ +..++ ++.+++||+........+
T Consensus 142 d~~~~~~~~~~---------------~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 204 (416)
T 2pm9_A 142 DMNKCTESPSN---------------YTPLTPGQSMSS--VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204 (416)
T ss_dssp BTTTTSSCTTT---------------CCCBCCCCSCCS--SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred ECCCCcccccc---------------ccccccccccCC--CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence 99875210000 000010112233 567899999999 55555 899999999775543332
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc-cccccccC---cCCCCCCccCC
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ-FDASNYDT---DKGDFGGFGSV 231 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~---~~~~~~~~~~~ 231 (384)
..+... ......+..+.+++++.. +.....|. ....|....
T Consensus 205 ~~~~~~---------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~-- 249 (416)
T 2pm9_A 205 SYTSPN---------------------------------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN-- 249 (416)
T ss_dssp CCCCCS---------------------------------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--
T ss_pred eccccc---------------------------------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--
Confidence 221100 000112333444444322 22222222 333332211
Q ss_pred CCceeEEEEe-ecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 232 SGKIEIEIKI-NHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 232 ~~~~~~~~~~-~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
+........ +|...|.+++|+| ++ .+|++++.||.|++||++ .+ +++..+.+|...|++++|+|++
T Consensus 250 -~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~--------~~--~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 250 -ANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPE--------SA--EQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp -TTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSS--------SC--CEEEEEECSSSCCCCEEECTTC
T ss_pred -CCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCC--------CC--ccceeecCCCCceEEEEECCCC
Confidence 111223334 7899999999999 66 599999999999999986 33 3566888999999999999998
Q ss_pred CCeEEEeeCCCcEEEEecCCCCCCCcccc----------------------------ceeeeeccCCcEeEEEEecCCCc
Q psy4577 310 NGYLLSASDDHTICLWDINATPKENRVID----------------------------AKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
+.+|++++.||.|++||+.+.+....... .+.....|..++++++|+|+|+.
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 56999999999999999988753211000 00111226788999999999998
Q ss_pred cccccc
Q psy4577 362 ADPVCT 367 (384)
Q Consensus 362 ~~~~c~ 367 (384)
+++...
T Consensus 398 la~~~~ 403 (416)
T 2pm9_A 398 VQITPD 403 (416)
T ss_dssp ECBCTT
T ss_pred EEEeCC
Confidence 876653
No 42
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.2e-32 Score=240.10 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=183.5
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++.+||+++.||.|+|||+....... ........+..+.+|...|++|+|+|++..+|++|+.||+|++|
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKP----EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSSC----CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCccccc----CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 46899855699999999999999997521100 00112345667789999999999999998788899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
++..+..... .+ . ....+.+| ...|.+++|+|+ +..++ ++.|++||++......
T Consensus 210 d~~~~~~~~~---------~~---~-----~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-- 268 (430)
T 2xyi_A 210 DINATPKEHR---------VI---D-----AKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-- 268 (430)
T ss_dssp ETTSCCBGGG---------EE---E-----CSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--
T ss_pred eCCCCCCCCc---------ee---c-----cceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--
Confidence 9976311000 00 0 01122234 667999999995 44554 8899999876432100
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
T Consensus 269 -------------------------------------------------------------------------------- 268 (430)
T 2xyi_A 269 -------------------------------------------------------------------------------- 268 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
.......|...|++++|+|+++.+|++|+.||.|++||++. ...++..+.+|...|++++|+|+++.+|++
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---------LKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---------TTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---------CCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 01122367889999999999977899999999999999962 223567888999999999999998667999
Q ss_pred eeCCCcEEEEecCCCCCCCc-------cccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 316 ASDDHTICLWDINATPKENR-------VIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
++.||+|+|||+........ ....+..+.+|...|++++|+|+++.+...
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 99999999999987321100 012677778899999999999999944333
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.5e-31 Score=226.42 Aligned_cols=267 Identities=13% Similarity=0.121 Sum_probs=189.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +|++++ |+.|++||+...+. ..........+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 57 ~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 57 VTISNPTR-HVYTGG-KGCVKVWDISHPGN---------KSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIW 124 (337)
T ss_dssp EEECSSSS-EEEEEC-BSEEEEEETTSTTC---------CSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEE
T ss_pred EEEecCCc-EEEEcC-CCeEEEEECCCCCc---------eeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEE
Confidence 47899997 799988 99999999976321 01112222237899999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..++. .....+.+| ...+.+++|+|+++.++ ++.+++|++.+......+.
T Consensus 125 d~~~~~~----------------------~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~ 180 (337)
T 1gxr_A 125 DLAAPTP----------------------RIKAELTSS--APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180 (337)
T ss_dssp ECCCC------------------------EEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCc----------------------ceeeecccC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Confidence 9977411 000112223 56688999999998877 8999999997765443333
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. +...+.|.| ++..+.....|.....|.. ... .
T Consensus 181 ~~~~--~i~~~~~~~-------------------------------------~~~~l~~~~~dg~i~~~d~----~~~-~ 216 (337)
T 1gxr_A 181 GHTD--GASCIDISN-------------------------------------DGTKLWTGGLDNTVRSWDL----REG-R 216 (337)
T ss_dssp CCSS--CEEEEEECT-------------------------------------TSSEEEEEETTSEEEEEET----TTT-E
T ss_pred cccC--ceEEEEECC-------------------------------------CCCEEEEEecCCcEEEEEC----CCC-c
Confidence 2221 123333433 3322332223333222211 111 1
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
......+...+.+++|+|+++ ++++++.|+.|++||++ ... ...+.+|...|.+++|+|++ .+|+++
T Consensus 217 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~--------~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~ 283 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVN--------KPD---KYQLHLHESCVLSLKFAYCG-KWFVST 283 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------SSC---EEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred eEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECC--------CCC---eEEEcCCccceeEEEECCCC-CEEEEe
Confidence 223346788999999999995 89999999999999986 222 34678899999999999998 799999
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
+.||.|++||+++++ .+.. ..|...|++++|+|+++.+++.+..
T Consensus 284 ~~dg~i~~~~~~~~~-------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGA-------SIFQ-SKESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp ETTSEEEEEETTTCC-------EEEE-EECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCCcEEEEECCCCe-------EEEE-ecCCCcEEEEEECCCCCEEEEecCC
Confidence 999999999999887 5543 4588999999999999987766543
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=239.90 Aligned_cols=314 Identities=11% Similarity=0.112 Sum_probs=206.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeec----CCcCcccccCCCCCCCCeeEEEe----------cccccceEEEEEccCCCc
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDL----SKIGEEQSTEDAEDGPPELLFIH----------GGHTAKISDFSWNPNEPW 66 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~----------~gh~~~V~~l~~~~~~~~ 66 (384)
++|+|+++.+||+|+.|+.|+|||+ .+.... ........+ .+|.+.|++++|+|++.
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 121 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKY--------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN- 121 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------C--------EEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCcccc--------ccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence 4799999757999999999999999 542100 000012222 23788999999999999
Q ss_pred EEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceee
Q psy4577 67 VICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYK 142 (384)
Q Consensus 67 ~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~ 142 (384)
+|++++.|+.|++||.... .+. .+.+| ...|.+++|+|+++.++ ++.++
T Consensus 122 ~l~~~~~dg~i~i~~~~~~--------------~~~-----------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTGA--------------LLN-----------VLNFH--RAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp EEEEEETTSCEEEEETTSC--------------EEE-----------EECCC--CSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EEEEEeCCCeEEEEeCCCC--------------eee-----------eccCC--CccEEEEEECCCCCEEEEEecCCeEE
Confidence 8889999999999994331 111 22233 56799999999998887 89999
Q ss_pred eeccccccccceeeccccccc-------------ceeeeeccCCCCC-CCCccceeEEEEeeecc---CCCCeEEEEEee
Q psy4577 143 IWKKNTPFLYDLVMTHALEWP-------------SLTAQWLPDVTRP-EGKDYSIHRLILGTHTS---DEQNHLLIASVQ 205 (384)
Q Consensus 143 ~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~ 205 (384)
+|++........+..+..... ...+.|.++.... ...+..+..+.+..... -......+..+.
T Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp EEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 999977655443332221100 2334444432200 00111111111100000 011223466777
Q ss_pred cCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q psy4577 206 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG 285 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 285 (384)
+++++..+.....|.....|.. ...........|...|.+++|+|++ ++++++.|+.|++||++ .+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~----~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~--------~~ 320 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHG----GNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLK--------QN 320 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECS----SSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETT--------TT
T ss_pred ECCCCCEEEEEcCCCEEEEEEC----CCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECC--------CC
Confidence 7777777776666766665533 1222244456799999999999988 88999999999999986 33
Q ss_pred CccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC-------------ccccceeeeeccCC--cE
Q psy4577 286 ECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN-------------RVIDAKTIFTGHTA--VV 350 (384)
Q Consensus 286 ~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~h~~--~v 350 (384)
..+..+..|...|.+++|+|++ .+|++++.||.|++||+++.+... ....++..+.+|.. .|
T Consensus 321 --~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 --TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp --EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred --cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 3556788899999999999998 799999999999999998653100 01125777888876 99
Q ss_pred eEEEEecCCCccccccc
Q psy4577 351 ELELIERLTKKADPVCT 367 (384)
Q Consensus 351 ~~~~~sp~~~~~~~~c~ 367 (384)
++++|+|+++.+++.+.
T Consensus 398 ~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEEECTTSSEEEEEES
T ss_pred EEEEccCCCceEEEEec
Confidence 99999999998766543
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-31 Score=233.92 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=182.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++.+||+|+.|+.|+|||+.+.. ........+|.+.|.+++|+|++..+|++++.|++|++|
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQN------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTT------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcc------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 47999984589999999999999998622 233333457999999999999443388999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+. .+..+.. .+.....+.+++|+|++..++ |+.+++||+...... .+.
T Consensus 147 d~~~~--------------~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~ 201 (383)
T 3ei3_B 147 DFSGS--------------VIQVFAK----------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIF-KEK 201 (383)
T ss_dssp ETTSC--------------EEEEEEC----------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEE-EEE
T ss_pred ECCCC--------------ceEEEec----------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEE-Eec
Confidence 99752 1111111 111246789999999999887 899999998543222 222
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCccCCCCce
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
.+. .++.++.|.|+ +. .+.....|.....|+.........
T Consensus 202 ~h~--~~v~~~~~~~~-------------------------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~ 242 (383)
T 3ei3_B 202 LHK--AKVTHAEFNPR-------------------------------------CDWLMATSSVDATVKLWDLRNIKDKNS 242 (383)
T ss_dssp CSS--SCEEEEEECSS-------------------------------------CTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred cCC--CcEEEEEECCC-------------------------------------CCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence 222 12333444433 32 222223333333332211111111
Q ss_pred eEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------------C
Q psy4577 236 EIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------------Q 297 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------------~ 297 (384)
.....+|...|.+++|+| ++. +|++++.|+.|++||++. +.. ...+.+| .
T Consensus 243 -~~~~~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 243 -YIAEMPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYD--------WSK--PDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp -EEEEEECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTB--------TTS--CSEEEECCBCCCTTSCCCCCEECSS
T ss_pred -eEEEecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCC--------Ccc--ccccccccccccccccceEEeccCC
Confidence 223337999999999999 885 999999999999999973 221 1122222 2
Q ss_pred CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCccccc
Q psy4577 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPV 365 (384)
Q Consensus 298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~ 365 (384)
..+..++|+|++ ++ +|+.||.|++||+++++ ++.++.+ |...+..++|+|+++.+++.
T Consensus 311 ~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~-------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 311 YDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGG-------LVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp SSEEEEECBCCT-TT--CTTCCCCEEEEETTTCC-------EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred CCceEEEecCCc-cc--ccCCCCeEEEEecCCCc-------eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 355668888887 55 89999999999999998 8888887 56788888999999987666
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.4e-34 Score=246.25 Aligned_cols=283 Identities=9% Similarity=0.053 Sum_probs=183.3
Q ss_pred CCCCCCCCceEEEeeCC-------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEE--
Q psy4577 1 VQWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV-- 71 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~-- 71 (384)
|+|+|+++ +||+|+.| +.|+||++......... .........+.+|.+.|.+++|+++ .++++
T Consensus 20 v~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~----~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~g~~ 91 (365)
T 4h5i_A 20 AKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE----QFHILSEFALEDNDDSPTAIDASKG---IILVGCN 91 (365)
T ss_dssp EEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHH----HEEEEEEEECCTTSCCCCEEEEETT---EEEEECC
T ss_pred EEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceee----eeeeeeEEEccCCCCceEEEEeCCC---EEEEEEC
Confidence 57999997 89998754 35999998753211000 0001122456789999999887643 44444
Q ss_pred ---------ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----
Q psy4577 72 ---------SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----- 137 (384)
Q Consensus 72 ---------s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 137 (384)
+.|+++|+|++..... .+..+... +....+..+..+.+++|+|||+.++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~------------~~~~~~~~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVND------------QLEFLTSV-----DFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTT------------EEEEEEEE-----CSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred CCccEEEEecCCCcEEEEEecCCCc------------eEEEeeee-----ceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 4577888888765311 01111100 0111222245678999999999875
Q ss_pred -cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc
Q psy4577 138 -NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS 216 (384)
Q Consensus 138 -d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 216 (384)
|++|++||..+......+. + ..++.++.|.|++. .+...
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~-~--~~~V~~v~fspdg~-------------------------------------~l~s~ 194 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE-T--RGEVKDLHFSTDGK-------------------------------------VVAYI 194 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE-C--SSCCCEEEECTTSS-------------------------------------EEEEE
T ss_pred CCCEEEEeECCCCcEEEEeC-C--CCceEEEEEccCCc-------------------------------------eEEec
Confidence 7899999998765433322 1 12244555555432 22211
Q ss_pred cccCcCCCCCCccCCCCce-eEEEEeecCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCcccee
Q psy4577 217 NYDTDKGDFGGFGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDL 291 (384)
Q Consensus 217 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~ 291 (384)
. +.....| +...+.. .......|...|.+++|+|+++ ++++++.|+ .+++|++... ........
T Consensus 195 s-~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~------~~~~~~~~ 263 (365)
T 4h5i_A 195 T-GSSLEVI---STVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSG------NTSVLRSK 263 (365)
T ss_dssp C-SSCEEEE---ETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETT------EEEEEEEE
T ss_pred c-ceeEEEE---EeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccc------eecceeee
Confidence 1 1111111 1111222 1223456888999999999995 888888777 6888988521 01122345
Q ss_pred eecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCccccccc
Q psy4577 292 RLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 292 ~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+.+|..+|++++|+|+| ++||+|+.|++|+|||+++++ ++.++ .+|..+|++|+||||++.+++...
T Consensus 264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~-------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS-------MSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE-------EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc-------EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 678899999999999999 799999999999999999988 88774 789999999999999998877643
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=233.62 Aligned_cols=236 Identities=16% Similarity=0.168 Sum_probs=179.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~ 78 (384)
++|+|++. +||+|+.||.|+|||+.... ......+.+|.+.|++++|+|+ +. +|++++.|++|+
T Consensus 17 ~~~s~~~~-~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~ 82 (379)
T 3jrp_A 17 AVLDYYGK-RLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVL 82 (379)
T ss_dssp EEECSSSS-EEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCEE
T ss_pred EEEcCCCC-EEEEEECCCcEEEEecCCCc------------ceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEEE
Confidence 47999997 89999999999999997411 4667788999999999999977 77 889999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+..++. ..+ ..+.+| ...+.+++|+|+ +..++ |+.+++|++......
T Consensus 83 iwd~~~~~~-----------~~~-----------~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 83 IWKEENGRW-----------SQI-----------AVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EEEEETTEE-----------EEE-----------EEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred EEEcCCCce-----------eEe-----------eeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 999987410 000 122223 567999999999 77766 889999887542110
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
T Consensus 139 -------------------------------------------------------------------------------- 138 (379)
T 3jrp_A 139 -------------------------------------------------------------------------------- 138 (379)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEeecCCceEEEEEcC-------------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577 233 GKIEIEIKINHEGEVNRARYMP-------------QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p-------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 299 (384)
.......|...|.+++|+| ++ .+|++++.||.|++||++.. .........+.+|...
T Consensus 139 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 139 ---SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSD------AQTYVLESTLEGHSDW 208 (379)
T ss_dssp ---CEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETT------TTEEEEEEEECCCSSC
T ss_pred ---eeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCC------CcceeeEEEEecccCc
Confidence 0122346778899999999 56 49999999999999999731 1112345678899999
Q ss_pred eEEEEeCCC---CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 300 GYGLSWNPS---LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 300 i~~~~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
|.+++|+|+ + .+|++++.||.|++||++++... ....+.....|...|++++|+|+++.+++.+.
T Consensus 209 v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 VRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGP--WKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSC--CEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred EeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCcc--ceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 999999999 7 79999999999999999986411 01122333458899999999999998876654
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-32 Score=273.06 Aligned_cols=340 Identities=13% Similarity=0.150 Sum_probs=223.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.||+|+|||+.+ .+.+..+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus 621 ~~~s~~~~-~l~s~~~d~~i~vw~~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 621 ACFSQDGQ-RIASCGADKTLQVFKAET--------------GEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIW 684 (1249)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEeCCCeEEEEECCC--------------CCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEE
Confidence 47999997 899999999999999986 466778899999999999999999 88899999999999
Q ss_pred EcccCCCccch--------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---
Q psy4577 81 SVVCVEPFDDA--------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--- 137 (384)
Q Consensus 81 d~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 137 (384)
|+.+++..... ......++.+++|+.........+.+| ...|.+++|+|++..++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--SSCEEEEEECSSTTEEEEEE
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--CCCEEEEEEecCCCEEEEEE
Confidence 99876422110 011224567899998777665566666 67899999999998887
Q ss_pred -cceeeeeccccccccceeeccc-----------ccccceeeeeccCCCCCC-----------------------CCccc
Q psy4577 138 -NEEYKIWKKNTPFLYDLVMTHA-----------LEWPSLTAQWLPDVTRPE-----------------------GKDYS 182 (384)
Q Consensus 138 -d~~v~~w~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 182 (384)
|+++++||+........+.... ......++.|.+++.... .....
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence 8999999987653322211100 000111122222211000 00000
Q ss_pred ee---------EEEEeeecc---------------CCCCeEEEEEeecCCCCcccccccccCcCCCCCC-----------
Q psy4577 183 IH---------RLILGTHTS---------------DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG----------- 227 (384)
Q Consensus 183 ~~---------~~~~~~~~~---------------~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~----------- 227 (384)
+. .+..+.... -..+...+..+.+++++..+.....|.....|..
T Consensus 843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 922 (1249)
T 3sfz_A 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL 922 (1249)
T ss_dssp CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc
Confidence 00 000000000 0011112444445554444444433333322210
Q ss_pred ----------------------------------------------------------------ccCCCCceeEEEEeec
Q psy4577 228 ----------------------------------------------------------------FGSVSGKIEIEIKINH 243 (384)
Q Consensus 228 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 243 (384)
.+............+|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC
Confidence 0001111123344579
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------CC-----------------CCCccceeee
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP-------------DP-----------------NGECHPDLRL 293 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~-----------------~~~~~~~~~~ 293 (384)
...|.+++|+|+++ +|++++.||.|++||+....... .+ .........+
T Consensus 1003 ~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp SSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE
T ss_pred CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE
Confidence 99999999999995 89999999999999986421100 00 0012234567
Q ss_pred cCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 294 ~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+|...|++++|+|++ .+|++++.||+|++||+.+++ ++..+.+|...|++++|+|+++.+++.+.
T Consensus 1082 ~~~~~~v~~~~~s~d~-~~l~s~s~d~~v~iwd~~~~~-------~~~~l~~h~~~v~~~~~s~dg~~lat~~~ 1147 (1249)
T 3sfz_A 1082 TCHQGTVLSCAISSDA-TKFSSTSADKTAKIWSFDLLS-------PLHELKGHNGCVRCSAFSLDGILLATGDD 1147 (1249)
T ss_dssp ECCSSCCCCEEECSSS-SSCEEECCSSCCCEECSSSSS-------CSBCCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCcc-------eeeeeccCCCcEEEEEECCCCCEEEEEeC
Confidence 7899999999999998 799999999999999999988 88899999999999999999998776643
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-31 Score=232.03 Aligned_cols=255 Identities=11% Similarity=0.137 Sum_probs=174.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||+.+.. .+.+..+.+|...|++++|+|++. +|++++.|+.|++|
T Consensus 14 ~~~s~~~~-~l~~~~~d~~v~i~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 14 HAWNKDRT-QIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVW 79 (372)
T ss_dssp EEECTTSS-EEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEeCCCCc------------EEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEE
Confidence 47999997 89999999999999998611 127788889999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..++. .... .+..| ...+.+++|+|+++.++ ++.+++|++..........
T Consensus 80 d~~~~~~-------------~~~~---------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 80 TLKGRTW-------------KPTL---------VILRI--NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp EEETTEE-------------EEEE---------ECCCC--SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ECCCCee-------------eeeE---------EeecC--CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 9976410 0000 11122 56789999999998887 8999999997655321111
Q ss_pred c--ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 157 T--HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 157 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
. .....+..++.|.|+.. .+..+. ....+.++.+.............+... ....
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~----------~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~ 192 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSV----------LLAAGS----CDFKCRIFSAYIKEVEERPAPTPWGSK---------MPFG 192 (372)
T ss_dssp EECTTCCSCEEEEEECTTSS----------EEEEEE----TTSCEEEEECCCTTTSCCCCCBTTBSC---------CCTT
T ss_pred eeecccCCCeeEEEEcCCCC----------EEEEEc----CCCCEEEEEcccccccccccccccccc---------cchh
Confidence 1 11122344555555431 122221 123344444331110000000000000 0112
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
........|...|.+++|+|++. +|++++.||.|++||++ .+ .++..+.+|..+|.+++|+|++ .+|+
T Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--------~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~ 260 (372)
T 1k8k_C 193 ELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADAD--------KK--MAVATLASETLPLLAVTFITES-SLVA 260 (372)
T ss_dssp CEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGG--------GT--TEEEEEECSSCCEEEEEEEETT-EEEE
T ss_pred hheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECC--------CC--ceeEEEccCCCCeEEEEEecCC-CEEE
Confidence 23445558999999999999995 99999999999999996 33 3566888999999999999998 6777
Q ss_pred EeeCCCcEEEEecCC
Q psy4577 315 SASDDHTICLWDINA 329 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~ 329 (384)
+| .|+.|++||++.
T Consensus 261 ~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 261 AG-HDCFPVLFTYDS 274 (372)
T ss_dssp EE-TTSSCEEEEEET
T ss_pred EE-eCCeEEEEEccC
Confidence 77 999999999987
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.6e-31 Score=232.90 Aligned_cols=264 Identities=16% Similarity=0.236 Sum_probs=179.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+||+++ +||+|. |++|+|||+.+.. ...+..+.+|.+.|++|+|+|+|. +||+|+.|++|++|
T Consensus 111 l~wS~~n--~lAvgl-d~tV~lWd~~tg~------------~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iW 174 (420)
T 4gga_A 111 VDWSSGN--VLAVAL-DNSVYLWSASSGD------------ILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLW 174 (420)
T ss_dssp EEECTTS--EEEEEE-TTEEEEEETTTCC------------EEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEECCCC--EEEEEe-CCEEEEEECCCCC------------EEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEE
Confidence 4688653 788875 9999999998721 223344567888999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc-cee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY-DLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~-~~~ 155 (384)
|+.+++ .+. .+.+| ...+.+++++ +..++ ++.+++|+....... ..+
T Consensus 175 d~~~~~-------------~~~-----------~~~~h--~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 175 DVQQQK-------------RLR-----------NMTSH--SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp ETTTTE-------------EEE-----------EECCC--SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EcCCCc-------------EEE-----------EEeCC--CCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEe
Confidence 998751 111 22334 4556666665 44554 899999987654322 111
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
..+... .....+.+ .+..+.....|.....|..........
T Consensus 227 ~~h~~~--~~~~~~~~-------------------------------------~g~~l~s~~~D~~v~i~~~~~~~~~~~ 267 (420)
T 4gga_A 227 SGHSQE--VCGLRWAP-------------------------------------DGRHLASGGNDNLVNVWPSAPGEGGWV 267 (420)
T ss_dssp ECCSSC--EEEEEECT-------------------------------------TSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred cccccc--eeeeeecC-------------------------------------CCCeeeeeeccccceEEeeccccccce
Confidence 222111 12222322 222222222232222222111111222
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
.......|.+.|.+++|+|.+.++++++ +.|++|++||++ ++. ....+..| ..+.++.|+|++ ..|
T Consensus 268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--------t~~--~~~~~~~~-~~v~~~~~~~~~-~~l 335 (420)
T 4gga_A 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--------SGA--CLSAVDAH-SQVCSILWSPHY-KEL 335 (420)
T ss_dssp CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT--------TTE--EEEEEECS-SCEEEEEEETTT-TEE
T ss_pred eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC--------ccc--cceeeccc-cceeeeeecCCC-CeE
Confidence 3455667999999999999887788764 579999999986 343 34455544 568999999998 677
Q ss_pred EEee--CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 314 LSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 314 ~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
++++ .|++|+|||+.+++ ++.++.+|.+.|++++|+|+|..+++.+
T Consensus 336 v~~sg~~d~~I~iwd~~~~~-------~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEECTTTCCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEecCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 7654 79999999999998 9999999999999999999999887654
No 51
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=241.76 Aligned_cols=308 Identities=12% Similarity=0.144 Sum_probs=187.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc------------cceEEEEEccCC--Cc
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT------------AKISDFSWNPNE--PW 66 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~V~~l~~~~~~--~~ 66 (384)
|+|+|++. +||+|+.||.|+|||+.+.... .........+...+.+|. +.|++++|+|++ .
T Consensus 34 v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~- 108 (447)
T 3dw8_B 34 VEFNHSGE-LLATGDKGGRVVIFQQEQENKI---QSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA- 108 (447)
T ss_dssp EEECSSSS-EEEEEETTSEEEEEEECC--------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS-
T ss_pred EEECCCCC-EEEEEcCCCeEEEEEecCCCCC---CcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc-
Confidence 57999997 8999999999999999863210 001112234677888998 889999999998 5
Q ss_pred EEEEEecCCeEEEEEcccCCCccchhheeeeee-----------eEEE-----eccCCcccccceeeeeeccCeeEEEEe
Q psy4577 67 VICSVSEDNIMQILSVVCVEPFDDAVEERVINE-----------EYKI-----WKKNTPFLYDLVMTHALEWPSLTAQWL 130 (384)
Q Consensus 67 ~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~ 130 (384)
+|++++.|++|++||+..++............+ .+.. |............+| ...|.+++|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~ 186 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH--TYHINSISIN 186 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC--SSCCCEEEEC
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC--CcceEEEEEc
Confidence 788999999999999976421100000000000 0000 000000000012334 6789999999
Q ss_pred cCceeee---cceeeeecccc-ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeec
Q psy4577 131 PDVTRVI---NEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQL 206 (384)
Q Consensus 131 ~~~~~~~---d~~v~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 206 (384)
|+++.++ |+.+++||+.. ......+....... ......+..+.+
T Consensus 187 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~ 234 (447)
T 3dw8_B 187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANM--------------------------------EELTEVITAAEF 234 (447)
T ss_dssp TTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSG--------------------------------GGCCCCEEEEEE
T ss_pred CCCCEEEEeCCCeEEEEECCCCCceeeeeecccccc--------------------------------cccCcceEEEEE
Confidence 9998887 99999999973 22222110000000 000112334444
Q ss_pred CCCC-cccccccccCcCCCCCCccCCCCceeEEEEeecC------------CceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy4577 207 PNED-AQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE------------GEVNRARYMPQNPCVIATKTPSSDVLVFD 273 (384)
Q Consensus 207 ~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~v~~~p~~~~~l~s~s~dg~i~iwd 273 (384)
++++ ..+.....|.....|+.............+..|. ..|.+++|+|+++ +|++++. +.|++||
T Consensus 235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWD 312 (447)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEE
T ss_pred CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEe
Confidence 4443 3333333444333332211110000123333444 4899999999995 8999998 9999999
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCc---------------eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccc
Q psy4577 274 YTKHPSKPDPNGECHPDLRLRGHQKE---------------GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 338 (384)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~h~~~---------------i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 338 (384)
++. ...++..+.+|... +..++|+|++ .+|++|+.||.|++||+.+++
T Consensus 313 ~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~------- 375 (447)
T 3dw8_B 313 LNM---------ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKR------- 375 (447)
T ss_dssp TTC---------CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCC-------
T ss_pred CCC---------CccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCc-------
Confidence 962 12345567777542 3349999998 799999999999999999875
Q ss_pred ceeeee---------------------------------ccCCcEeEEEEecCCCccccccc
Q psy4577 339 AKTIFT---------------------------------GHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 339 ~~~~~~---------------------------------~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+ .+. .+...|.+++|||+++.++..+.
T Consensus 376 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 376 DI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp EE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred ce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence 22 111 24567999999999998776543
No 52
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=250.63 Aligned_cols=330 Identities=10% Similarity=0.042 Sum_probs=205.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+| ++ +||+++.|++|+|||+.+ .+++..+. |.+.|++++|+|++. +|++|+.||+|++|
T Consensus 64 l~fsp-g~-~L~S~s~D~~v~lWd~~~--------------~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 64 MRFVK-GI-YLVVINAKDTVYVLSLYS--------------QKVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVY 125 (902)
T ss_dssp EEEET-TT-EEEEEETTCEEEEEETTT--------------CSEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEE
T ss_pred EEEcC-CC-EEEEEECcCeEEEEECCC--------------CcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence 47899 76 899999999999999986 24555554 667999999999999 78899999999999
Q ss_pred EcccCCCcc-------------c-----------------hhheeeeeeeEEEeccCCcccccceeee------------
Q psy4577 81 SVVCVEPFD-------------D-----------------AVEERVINEEYKIWKKNTPFLYDLVMTH------------ 118 (384)
Q Consensus 81 d~~~~~~~~-------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 118 (384)
|+.+++... . .......++.+ +|+.........+.+|
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 997654210 0 00011235677 8987765444444443
Q ss_pred ----eeccCeeEEEEecCceeee----cceeeeeccccccccce--e---eccc-----------ccccceeeeeccCCC
Q psy4577 119 ----ALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL--V---MTHA-----------LEWPSLTAQWLPDVT 174 (384)
Q Consensus 119 ----~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~--~---~~~~-----------~~~~~~~~~~~~~~~ 174 (384)
.+...|.+++|+|+|..++ |++|++||..+...... + ..+. ...++.++.|.+...
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~ 284 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN 284 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence 1135799999999999888 99999999976543221 1 0010 011234455532110
Q ss_pred -------C---CCC--CccceeEEEEeee----------------------------c-----------------c----
Q psy4577 175 -------R---PEG--KDYSIHRLILGTH----------------------------T-----------------S---- 193 (384)
Q Consensus 175 -------~---~~~--~~~~~~~~~~~~~----------------------------~-----------------~---- 193 (384)
. ... ....+..+.++.. . .
T Consensus 285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~ 364 (902)
T 2oaj_A 285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364 (902)
T ss_dssp TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence 0 000 0001111111000 0 0
Q ss_pred ------CCCCeEEEEEe------------------------------------------------------------ecC
Q psy4577 194 ------DEQNHLLIASV------------------------------------------------------------QLP 207 (384)
Q Consensus 194 ------~~~~~~~i~~~------------------------------------------------------------~~~ 207 (384)
.....+.++.+ .++
T Consensus 365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence 00011222211 112
Q ss_pred CCCcccccccccCcCCCCCCccCCCCceeEEE--E-----eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577 208 NEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI--K-----INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK 280 (384)
Q Consensus 208 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~ 280 (384)
+++..++....|...+.|+............. . .+|...|.+|+|+|+++ +||+|+.||+|+|||+......
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC-
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCcccc
Confidence 33333444445555555543222111000111 1 16889999999999996 9999999999999999643100
Q ss_pred C--------C-------------C--------------CCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 281 P--------D-------------P--------------NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 281 ~--------~-------------~--------------~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
. + + ....+++..+.+|.++|++|+||||| +||+|+.|++|+||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEE
Confidence 0 0 0 00013466888999999999999997 99999999999999
Q ss_pred ecCCCCCCCccccce-----eeee-ccCCcEeEEEEe-----cCC
Q psy4577 326 DINATPKENRVIDAK-----TIFT-GHTAVVELELIE-----RLT 359 (384)
Q Consensus 326 d~~~~~~~~~~~~~~-----~~~~-~h~~~v~~~~~s-----p~~ 359 (384)
|+++.. .+ ..+. +|.+.|++|+|+ |||
T Consensus 602 d~~~~~-------~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 602 DRRGPA-------IIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp ETTTTE-------EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred ECCCCe-------EEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence 997764 33 2454 899999999999 987
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=241.51 Aligned_cols=230 Identities=9% Similarity=0.038 Sum_probs=163.6
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC------CCcEEEEEecCCeEEEEEcc
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN------EPWVICSVSEDNIMQILSVV 83 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~------~~~~l~s~s~D~~i~vwd~~ 83 (384)
+||+++.|++|+|||+.... .......++.+|.+.|.+++|+|+ +. +||+++.||+|++||+.
T Consensus 175 ~laS~s~D~tI~iWd~~~~~----------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTST----------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEII 243 (524)
T ss_dssp -------CEEEEEEEEETTT----------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECC
T ss_pred hhccCCCCceEEEEEccCCC----------CCceEEEEEEecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcC
Confidence 35557789999999987521 011223456778889999999997 34 89999999999999997
Q ss_pred cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeeccc
Q psy4577 84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA 159 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~ 159 (384)
.+..... .......+. ..+.+| ...|.+++|+|++ .++ |++|++||+.+...
T Consensus 244 ~~~~~~~-----------~~~~~~~p~--~~l~~h--~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-------- 299 (524)
T 2j04_B 244 DNATDVH-----------VFKMCEKPS--LTLSLA--DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-------- 299 (524)
T ss_dssp CCSSSSS-----------EEECCCSCS--EEECCT--TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS--------
T ss_pred CCccccc-----------cceeecCce--EEEEcC--CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC--------
Confidence 6421100 000001111 133445 5789999999876 444 99999999853211
Q ss_pred ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577 160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI 239 (384)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 239 (384)
+...
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (524)
T 2j04_B 300 ----------------------------------------------------------------------------PSFY 303 (524)
T ss_dssp ----------------------------------------------------------------------------CSEE
T ss_pred ----------------------------------------------------------------------------ceEE
Confidence 0122
Q ss_pred EeecCCceEEE--EEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEE
Q psy4577 240 KINHEGEVNRA--RYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 240 ~~~~~~~v~~v--~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s 315 (384)
+.+|...|++| +|+|++.++||||+.|++|+|||++ .+. ....+.+|.. .|.+++|+|++ ..|++
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~--------~~~--~~~~~~~~~~~~~v~~v~fsp~~-~~l~s 372 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK--------DIA--TTKTTVSRFRGSNLVPVVYCPQI-YSYIY 372 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG--------GHH--HHCEEEEECSCCSCCCEEEETTT-TEEEE
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC--------CCC--cccccccccccCcccceEeCCCc-CeEEE
Confidence 34688899999 5678763499999999999999996 332 3335566653 58899999998 69999
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
++.|++|++||++++. ++.++.+|.+.|++|+|||+++.+++.+..
T Consensus 373 ~~~d~tv~lwd~~~~~-------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 373 SDGASSLRAVPSRAAF-------AVHPLVSRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp ECSSSEEEEEETTCTT-------CCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred eCCCCcEEEEECcccc-------cceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence 9999999999999987 888899999999999999999987765433
No 54
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-31 Score=228.29 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=186.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--CCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i~ 78 (384)
|+|+|++. +||+|+.||.|+|||+.... ...+....+.+|...|++++|+| ++. +|++++.|++|+
T Consensus 17 ~~~~~~~~-~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~ 84 (351)
T 3f3f_A 17 VVYDFYGR-HVATCSSDQHIKVFKLDKDT----------SNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVK 84 (351)
T ss_dssp EEECSSSS-EEEEEETTSEEEEEEECSSS----------CCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEE
T ss_pred EEEcCCCC-EEEEeeCCCeEEEEECCCCC----------CcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEE
Confidence 47999997 89999999999999998522 12356777889999999999999 577 889999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+..++..... ........+.+| ...+.+++|+|+ +..++ |+.+++||+......
T Consensus 85 vwd~~~~~~~~~~---------------~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 85 LWEEDPDQEECSG---------------RRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp EEEECTTSCTTSS---------------CSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred EEecCCCcccccc---------------cCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 9999875221000 000011122233 677999999999 87776 899999998765432
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
..+.... .+..+.
T Consensus 148 ~~~~~~~----------------------------------------~~~~~~--------------------------- 160 (351)
T 3f3f_A 148 RSWTLTS----------------------------------------EMKVLS--------------------------- 160 (351)
T ss_dssp TCCEEEE----------------------------------------EEESCS---------------------------
T ss_pred ccccccc----------------------------------------cccccc---------------------------
Confidence 2111000 000000
Q ss_pred CceeEEEEeecCCceEEEEEcCC---CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQ---NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
.....|...+.+++|+|+ + .++++++.|+.+.+|+.. .+....+..+.+|...|++++|+|++
T Consensus 161 -----~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 161 -----IPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGK--------DGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp -----CCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECT--------TSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred -----cccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccC--------CCceeeeeecCCCCcceeEEEECCCC
Confidence 001146778999999997 6 599999999999888765 44444577888999999999999997
Q ss_pred C---CeEEEeeCCCcEEEEecCCCCCC---------------------------------------CccccceeeeeccC
Q psy4577 310 N---GYLLSASDDHTICLWDINATPKE---------------------------------------NRVIDAKTIFTGHT 347 (384)
Q Consensus 310 ~---~~l~s~s~Dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~~~h~ 347 (384)
+ .+|++|+.||.|++||++.+... .....++..+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 3 48999999999999999875210 00113677788999
Q ss_pred CcEeEEEEecCCCccccccc
Q psy4577 348 AVVELELIERLTKKADPVCT 367 (384)
Q Consensus 348 ~~v~~~~~sp~~~~~~~~c~ 367 (384)
..|++++|+|+++.+++.+.
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp SCEEEEEECSSSCCEEEEET
T ss_pred ccEEEEEEcCCCCEEEEecC
Confidence 99999999999998776643
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-31 Score=244.98 Aligned_cols=320 Identities=11% Similarity=0.085 Sum_probs=210.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccC-CCcEEEEEecCCe
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPN-EPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~-~~~~l~s~s~D~~ 76 (384)
++|+|+++.+|++++.|+.|++||+.+ .+.+..+.+|.. .|++++|+|+ +. +|++++.|+.
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~ 230 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRK 230 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCC
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCe
Confidence 468999976799999999999999876 477788899999 9999999999 88 8889999999
Q ss_pred EEEEEcccCCCccch-----h----------------heeeeeeeEEEeccCCcccccceeee--eeccCeeEEEEecCc
Q psy4577 77 MQILSVVCVEPFDDA-----V----------------EERVINEEYKIWKKNTPFLYDLVMTH--ALEWPSLTAQWLPDV 133 (384)
Q Consensus 77 i~vwd~~~~~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 133 (384)
|++||+.+++..... . .....++.+++|+.........+..+ .....+.++.|. ++
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 999999776432211 0 00113467888987755443333333 123567788886 66
Q ss_pred eeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCc----------------cceeEEE------
Q psy4577 134 TRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD----------------YSIHRLI------ 187 (384)
Q Consensus 134 ~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~------ 187 (384)
..++ ++.+++|+.........+..+.. ++.++.+ |+ ......+ ..+..+.
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~ 385 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 385 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence 6555 89999999887555444444332 2334444 33 1000000 0000000
Q ss_pred --EeeeccCCCCeEE------------EEEeecCCCC--------------------------------------ccccc
Q psy4577 188 --LGTHTSDEQNHLL------------IASVQLPNED--------------------------------------AQFDA 215 (384)
Q Consensus 188 --~~~~~~~~~~~~~------------i~~~~~~~~~--------------------------------------~~~~~ 215 (384)
.+.. ...+. +..+.+++++ ..+..
T Consensus 386 l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 386 YSSISW----DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp CEEEET----TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred EEEEeC----CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 0000 01111 1111111111 11111
Q ss_pred ccc-cCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577 216 SNY-DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR 294 (384)
Q Consensus 216 ~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 294 (384)
... |.....|... .+.........|...|.+++|+|+++ +|++++.||.|++||+. .+ +.+..+.
T Consensus 462 ~~~~d~~i~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~--------~~--~~~~~~~ 527 (615)
T 1pgu_A 462 GLEEGNTIQVFKLS---DLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQ--------SR--EVKTSRW 527 (615)
T ss_dssp EETTTSCEEEEETT---EEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TT--EEEECCS
T ss_pred eecCCCeEEEEECC---CccccccccCCccCceEEEEECCCCC-EEEEcCCCCeEEEeeCC--------CC--cceeEee
Confidence 111 2222222110 01111133456889999999999995 99999999999999986 33 3455677
Q ss_pred C-CCCceEEEEeCC----------CCCCeEEEeeCCCcEEEEecCCC-CCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577 295 G-HQKEGYGLSWNP----------SLNGYLLSASDDHTICLWDINAT-PKENRVIDAKTIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 295 ~-h~~~i~~~~~s~----------~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
+ |...|++++|+| ++ .+|++|+.||+|++||+.++ + ++..+.+|...|++++|+|+++ +
T Consensus 528 ~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 528 AFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPMK-------IIKALNAHKDGVNNLLWETPST-L 598 (615)
T ss_dssp CCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTTC-------CEEETTSSTTCEEEEEEEETTE-E
T ss_pred cCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCce-------echhhhcCccceEEEEEcCCCC-e
Confidence 7 999999999999 98 79999999999999999987 5 8888999999999999999999 6
Q ss_pred ccccc
Q psy4577 363 DPVCT 367 (384)
Q Consensus 363 ~~~c~ 367 (384)
++.+.
T Consensus 599 ~s~~~ 603 (615)
T 1pgu_A 599 VSSGA 603 (615)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 65543
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-31 Score=227.64 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=169.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.+++|++..... .........+.+|.+.|.+++|+|++. .|++++.|++|++|
T Consensus 112 ~~~sp~g~-~lasg~~d~~i~v~~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lw 181 (354)
T 2pbi_B 112 CAYAPSGC-AIACGGLDNKCSVYPLTFDKN--------ENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALW 181 (354)
T ss_dssp EEECTTSS-EEEEESTTSEEEEEECCCCTT--------CCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEeeCCCCEEEEEEecccc--------ccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEE
Confidence 47999997 799999999999999875221 111234456678999999999999998 77899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeeccccccccce
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLYDL 154 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~ 154 (384)
|+.+++. + ..+.+| ...|.+++|+|+ +..++ |+++++||+++......
T Consensus 182 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~ 235 (354)
T 2pbi_B 182 DVESGQL-------------L-----------QSFHGH--GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235 (354)
T ss_dssp ETTTCCE-------------E-----------EEEECC--SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eCCCCeE-------------E-----------EEEcCC--CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9987521 1 133344 567888999874 56666 99999999987655443
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
+..+.. .+..+.+++++..+.....|...+.|+.. ..
T Consensus 236 ~~~h~~---------------------------------------~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----~~ 272 (354)
T 2pbi_B 236 FETHES---------------------------------------DVNSVRYYPSGDAFASGSDDATCRLYDLR----AD 272 (354)
T ss_dssp ECCCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEETT----TT
T ss_pred ecCCCC---------------------------------------CeEEEEEeCCCCEEEEEeCCCeEEEEECC----CC
Confidence 333321 23344444444444444455554444321 11
Q ss_pred eeEEEEe--ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577 235 IEIEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY 312 (384)
Q Consensus 235 ~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~ 312 (384)
....... .+...+.+++|+|++. +|++|+.|+.|++||+. .+. .+..+.+|...|++++|+|++ .+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~--------~~~--~~~~l~~h~~~v~~l~~spdg-~~ 340 (354)
T 2pbi_B 273 REVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVL--------KGS--RVSILFGHENRVSTLRVSPDG-TA 340 (354)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TCS--EEEEECCCSSCEEEEEECTTS-SC
T ss_pred cEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECC--------CCc--eEEEEECCCCcEEEEEECCCC-CE
Confidence 1122222 2335789999999995 99999999999999986 333 456788999999999999999 79
Q ss_pred EEEeeCCCcEEEEe
Q psy4577 313 LLSASDDHTICLWD 326 (384)
Q Consensus 313 l~s~s~Dg~i~iwd 326 (384)
|+||+.||+|+||+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999996
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.8e-31 Score=251.82 Aligned_cols=260 Identities=14% Similarity=0.175 Sum_probs=195.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|||+++ +||+|+.||.|+|||+.+ ...+..+.+|.+.|++++|+|+++ +|++++.||.|++|
T Consensus 19 i~~sp~~~-~la~~~~~g~v~iwd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 19 IDFHPTEP-WVLTTLYSGRVEIWNYET--------------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEECCC--------------CceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence 57999997 899999999999999976 467788889999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-ccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~~~ 155 (384)
|+.+++. + ..+.+| ...|.+++|+|+++.++ |+.+++|+.... .....+
T Consensus 83 ~~~~~~~-------------~-----------~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 136 (814)
T 3mkq_A 83 NYNTGEK-------------V-----------VDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (814)
T ss_dssp ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred ECCCCcE-------------E-----------EEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence 9977521 1 122334 56799999999998887 899999998765 332222
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
..+.. +..++.|.|. ++..+.....|.....|.. ..+..
T Consensus 137 ~~~~~--~v~~~~~~p~------------------------------------~~~~l~~~~~dg~v~vwd~---~~~~~ 175 (814)
T 3mkq_A 137 EGHEH--FVMCVAFNPK------------------------------------DPSTFASGCLDRTVKVWSL---GQSTP 175 (814)
T ss_dssp ECCSS--CEEEEEEETT------------------------------------EEEEEEEEETTSEEEEEET---TCSSC
T ss_pred cCCCC--cEEEEEEEcC------------------------------------CCCEEEEEeCCCeEEEEEC---CCCcc
Confidence 22221 2333444431 1111222222222222211 01122
Q ss_pred eEEEEeecCCceEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 236 EIEIKINHEGEVNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
.......+...+.+++|+| ++. ++++++.||.|++||++ .+ ..+..+.+|...|.+++|+|++ .+|
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~--------~~--~~~~~~~~~~~~v~~~~~~~~~-~~l 243 (814)
T 3mkq_A 176 NFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQ--------TK--SCVATLEGHMSNVSFAVFHPTL-PII 243 (814)
T ss_dssp SEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETT--------TT--EEEEEEECCSSCEEEEEECSSS-SEE
T ss_pred eeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC-CEE
Confidence 2233334558999999999 885 99999999999999985 33 3466788999999999999999 699
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577 314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
++++.||.|++||+.+++ .+..+..|...|++++|+|++..+
T Consensus 244 ~~~~~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 244 ISGSEDGTLKIWNSSTYK-------VEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp EEEETTSCEEEEETTTCS-------EEEEECCSSSSEEEEEECTTCGGG
T ss_pred EEEeCCCeEEEEECCCCc-------EEEEeecCCCcEEEEEEccCCCce
Confidence 999999999999999988 889999999999999999999864
No 58
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=221.57 Aligned_cols=253 Identities=13% Similarity=0.139 Sum_probs=181.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++| |++. +||+|+.||.|+|||+.+ ......+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus 24 ~~~-~~~~-~l~s~~~dg~v~vw~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 24 VVA-VDDS-KVASVSRDGTVRLWSKDD--------------QWLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMINGV 86 (313)
T ss_dssp EEE-EETT-EEEEEETTSEEEEEEESS--------------SEEEEEEEECSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred EEe-cCCC-EEEEEEcCCcEEEEECCC--------------CEEEEEeecCCccEEEEEECCCCC-EEEEecCCCeEEEE
Confidence 357 7786 799999999999999976 466777789999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
++..... ......+.+| ...+.+++|. +..++ ++.+++|+.. .....+.
T Consensus 87 ~~~~~~~---------------------~~~~~~~~~~--~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~--~~~~~~~ 139 (313)
T 3odt_A 87 PLFATSG---------------------EDPLYTLIGH--QGNVCSLSFQ--DGVVISGSWDKTAKVWKEG--SLVYNLQ 139 (313)
T ss_dssp ETTCCTT---------------------SCC-CEECCC--SSCEEEEEEE--TTEEEEEETTSEEEEEETT--EEEEEEE
T ss_pred EeeecCC---------------------CCcccchhhc--ccCEEEEEec--CCEEEEEeCCCCEEEEcCC--cEEEecc
Confidence 9976311 0011123344 5678899993 44554 8999999821 1111112
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+. .+...+.+.+. ++..+.....|.....|. ....
T Consensus 140 ~~~--~~v~~~~~~~~------------------------------------~~~~l~~~~~d~~i~i~d-----~~~~- 175 (313)
T 3odt_A 140 AHN--ASVWDAKVVSF------------------------------------SENKFLTASADKTIKLWQ-----NDKV- 175 (313)
T ss_dssp CCS--SCEEEEEEEET------------------------------------TTTEEEEEETTSCEEEEE-----TTEE-
T ss_pred cCC--CceeEEEEccC------------------------------------CCCEEEEEECCCCEEEEe-----cCce-
Confidence 221 11222333221 122222222233322221 1122
Q ss_pred EEEEee-cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 237 IEIKIN-HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 237 ~~~~~~-~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
...... |...|.+++|+|++. +++++.||.|++||++ .+ +++..+.+|...|++++|+|++ .|++
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~--------~~--~~~~~~~~~~~~i~~~~~~~~~--~l~~ 241 (313)
T 3odt_A 176 IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMH--------TG--DVLRTYEGHESFVYCIKLLPNG--DIVS 241 (313)
T ss_dssp EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECTTS--CEEE
T ss_pred EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECC--------ch--hhhhhhhcCCceEEEEEEecCC--CEEE
Confidence 233334 899999999999984 8899999999999986 33 3566888999999999999997 5899
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
++.||.|++||+++++ ++..+..|...|++++|+|++..+
T Consensus 242 ~~~dg~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~ 281 (313)
T 3odt_A 242 CGEDRTVRIWSKENGS-------LKQVITLPAISIWSVDCMSNGDII 281 (313)
T ss_dssp EETTSEEEEECTTTCC-------EEEEEECSSSCEEEEEECTTSCEE
T ss_pred EecCCEEEEEECCCCc-------eeEEEeccCceEEEEEEccCCCEE
Confidence 9999999999999998 899999999999999999999843
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.6e-31 Score=229.02 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=140.6
Q ss_pred CCCCCCCCceEE--EeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILA--SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~la--t~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~ 78 (384)
|+|||||+ +|| +++.|++|+|||+.+ .+.+..+. |.+.|++|+|+|+|+ +|++++.|+ ++
T Consensus 139 v~fSpDg~-~la~as~~~d~~i~iwd~~~--------------~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~~-~~ 200 (365)
T 4h5i_A 139 VYISREGT-VAAIASSKVPAIMRIIDPSD--------------LTEKFEIE-TRGEVKDLHFSTDGK-VVAYITGSS-LE 200 (365)
T ss_dssp EEECTTSS-CEEEEESCSSCEEEEEETTT--------------TEEEEEEE-CSSCCCEEEECTTSS-EEEEECSSC-EE
T ss_pred EEEcCCCC-EEEEEECCCCCEEEEeECCC--------------CcEEEEeC-CCCceEEEEEccCCc-eEEecccee-EE
Confidence 47999998 555 555799999999986 35555554 777899999999999 778887554 55
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cc----eeeeecccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE----EYKIWKKNTPF 150 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~----~v~~w~~~~~~ 150 (384)
+|+..+++. .. .....+| ...+.+++|+|+++.++ ++ .+++|+.....
T Consensus 201 ~~~~~~~~~-------------~~---------~~~~~~~--~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~ 256 (365)
T 4h5i_A 201 VISTVTGSC-------------IA---------RKTDFDK--NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN 256 (365)
T ss_dssp EEETTTCCE-------------EE---------EECCCCT--TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred EEEeccCcc-------------ee---------eeecCCC--CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence 665544311 00 0011122 45688999999998876 22 23333321100
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
.
T Consensus 257 ~------------------------------------------------------------------------------- 257 (365)
T 4h5i_A 257 T------------------------------------------------------------------------------- 257 (365)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCC
Q psy4577 231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~ 309 (384)
.........+|...|++++|+|+++ +||+|+.|++|+|||++ ++ +++.. +.+|..+|++|+|||||
T Consensus 258 --~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~--------~~--~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 258 --SVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLK--------DL--SMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp --EEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETT--------TT--EEEEEETTSSSSCEEEEEECTTS
T ss_pred --cceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECC--------CC--cEEEEecCcccCCEEEEEECCCC
Confidence 0011234457888999999999995 99999999999999986 33 34545 57999999999999999
Q ss_pred CCeEEEeeCCCcEEEEecCCC
Q psy4577 310 NGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
++|||||.|++|+|||+...
T Consensus 325 -~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 -TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -CEEEEEETTSEEEEEECCTT
T ss_pred -CEEEEEeCCCeEEEEEcCCC
Confidence 79999999999999999754
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-31 Score=227.75 Aligned_cols=272 Identities=10% Similarity=0.055 Sum_probs=190.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||+.... .......+.+|...|++++|+|++..+|++++.|+.|++|
T Consensus 17 ~~~s~~~~-~l~~~~~d~~v~iw~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 17 IKIIPSKS-LLLITSWDGSLTVYKFDIQA-----------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp EEEEGGGT-EEEEEETTSEEEEEEEETTT-----------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EEEcCCCC-EEEEEcCCCeEEEEEeCCCC-----------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 47899987 79999999999999997621 0123445568999999999999977356799999999999
Q ss_pred Ec-ccCCCccchhheeeeeeeEEEeccCCcccccceee--eeeccCeeEEEEecCceeee----cceeeeecccc-----
Q psy4577 81 SV-VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT--HALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT----- 148 (384)
Q Consensus 81 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~----- 148 (384)
|+ ..++. ..+.+ | ...|.+++|+| +..++ |+.+++|++..
T Consensus 85 d~~~~~~~-------------------------~~~~~~~~--~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 85 DLIGSPSF-------------------------QALTNNEA--NLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp CSSSSSSE-------------------------EECBSCCC--CSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred EeccCCce-------------------------EeccccCC--CCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 99 76411 12223 3 56799999999 77766 99999999865
Q ss_pred ----ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577 149 ----PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD 224 (384)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~ 224 (384)
......+. ......++.+.++. +..+.. ...+.++.+. .
T Consensus 137 ~~~~~~~~~~~~---~~~~v~~~~~~~~~------------l~~~~~----d~~i~i~d~~----------------~-- 179 (342)
T 1yfq_A 137 IAVKNLNSNNTK---VKNKIFTMDTNSSR------------LIVGMN----NSQVQWFRLP----------------L-- 179 (342)
T ss_dssp EEEEESCSSSSS---SCCCEEEEEECSSE------------EEEEES----TTEEEEEESS----------------C--
T ss_pred ccccCCeeeEEe---eCCceEEEEecCCc------------EEEEeC----CCeEEEEECC----------------c--
Confidence 32221111 11112233332211 111111 1122222221 1
Q ss_pred CCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-----
Q psy4577 225 FGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK----- 298 (384)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----- 298 (384)
. ...........|...|.+++|+| ++. ++++++.||.|++|+++.... .....+...+.+|..
T Consensus 180 -----~-~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 180 -----C-EDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGD----DYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp -----C-TTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCC----STTCTTCEEEECCCCCTTCC
T ss_pred -----c-ccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCc----ccccccceeeeccccccccc
Confidence 0 00112334456888999999999 985 999999999999999963200 000234567777755
Q ss_pred ----ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCcccccccccc
Q psy4577 299 ----EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKADPVCTLEK 370 (384)
Q Consensus 299 ----~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~c~~~~ 370 (384)
.|.+++|+|++ .+|++++.||.|++||+++++ .+..+.+| ...|++++ |++..+++.+....
T Consensus 249 ~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK-------KIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-------EEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh-------HhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 99999999998 799999999999999999988 88999998 99999999 99998887776665
No 61
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=5.9e-30 Score=218.25 Aligned_cols=263 Identities=14% Similarity=0.200 Sum_probs=174.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE--EecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~ 78 (384)
|+|||++ +||+|. |++|+|||+.+ .+++. .+.+|...|++++|+|+++ +|++|+.|++|+
T Consensus 31 l~WS~~~--~lAvg~-D~tV~iWd~~t--------------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 31 VDWSSGN--VLAVAL-DNSVYLWSASS--------------GDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQ 92 (318)
T ss_dssp EEECTTS--EEEEEE-TTEEEEEETTT--------------CCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred EEECCCC--EEEEEe-CCEEEEEECCC--------------CCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEE
Confidence 4688875 788775 99999999986 23333 4457888999999999999 888999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc-c
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY-D 153 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~-~ 153 (384)
+||+.+++. +. .+.+| ...+.+ +++++..++ ++.+++|+....... .
T Consensus 93 iw~~~~~~~-------------~~-----------~~~~h--~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 93 LWDVQQQKR-------------LR-----------NMTSH--SARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp EEETTTTEE-------------EE-----------EEECC--SSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred EeecCCcee-------------EE-----------EecCc--cceEEE--eecCCCEEEEEecCCceEeeecCCCceeEE
Confidence 999987521 11 22233 233333 444555554 777888776543221 1
Q ss_pred eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577 154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 233 (384)
.+..+.. .+..+.+.+.+..+.....|.....|........
T Consensus 145 ~~~~~~~---------------------------------------~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 145 TLSGHSQ---------------------------------------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp EEECCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred EEcCccC---------------------------------------ceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 1111111 1112222222223333333333333322111112
Q ss_pred ceeEEEEeecCCceEEEEEcCCCCcEE--EEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577 234 KIEIEIKINHEGEVNRARYMPQNPCVI--ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG 311 (384)
Q Consensus 234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 311 (384)
.........|.+.|.+++++|++..++ ++++.++.|++||.+ ... ......|...+..+.|+|++ .
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~--------~~~---~~~~~~~~~~v~~~~~~~~~-~ 253 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--------SGA---CLSAVDAHSQVCSILWSPHY-K 253 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT--------TCC---EEEEEECSSCEEEEEEETTT-T
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc--------ccc---ccccccceeeeeeeeecccc-c
Confidence 222444557888999999999876655 466788999999985 222 22344577789999999998 5
Q ss_pred eEEEee--CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 312 YLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 312 ~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+++++ .|+.|++||+++++ ++.++.+|.+.|++++|+|+++.+++.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~-------~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ceEEEEEcCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 666544 79999999999998 99999999999999999999998876544
No 62
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=7.2e-31 Score=231.45 Aligned_cols=276 Identities=17% Similarity=0.149 Sum_probs=187.8
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCeEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~vw 80 (384)
+++|+...++++++.||.|+||++...+.. ......+.+|.+.|++++|+| ++. +|++|+.||+|++|
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----------~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRV----------DKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVW 109 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEEC----------CTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEE
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCC----------CCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEE
Confidence 567776656677899999999999753211 123345679999999999999 777 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc-eeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+..+.... ... .....+.+| ...|.+++|+|++ ..++ |+.+++||+........+
T Consensus 110 ~~~~~~~~~---------------~~~--~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 110 EIPDGGLVL---------------PLR--EPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp ECCTTCCSS---------------CBC--SCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EccCCCCcc---------------ccC--CceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 998752210 000 011234455 6789999999998 4555 899999999876544333
Q ss_pred --ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577 156 --MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233 (384)
Q Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 233 (384)
..+. . .+..+.+++++..+.....|.....|+. ..+
T Consensus 171 ~~~~~~--~-------------------------------------~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~~ 208 (402)
T 2aq5_A 171 GPDVHP--D-------------------------------------TIYSVDWSRDGALICTSCRDKRVRVIEP---RKG 208 (402)
T ss_dssp CTTTCC--S-------------------------------------CEEEEEECTTSSCEEEEETTSEEEEEET---TTT
T ss_pred ecCCCC--C-------------------------------------ceEEEEECCCCCEEEEEecCCcEEEEeC---CCC
Confidence 1121 1 1333344444444444444444333321 112
Q ss_pred ceeEEEE-eecCCc-eEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCC
Q psy4577 234 KIEIEIK-INHEGE-VNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNP 307 (384)
Q Consensus 234 ~~~~~~~-~~~~~~-v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~ 307 (384)
.. .... ..|.+. +.+++|+|++ .+|++| +.|+.|++||++. ... ++.. ...|...+.+++|+|
T Consensus 209 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~--------~~~-~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 209 TV-VAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKH--------LEE-PLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp EE-EEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTB--------CSS-CSEEEECCCCSSCEEEEEET
T ss_pred ce-eeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCcc--------ccC-CceEEeccCCCceeEEEEcC
Confidence 22 3333 577766 8999999998 499998 7999999999962 222 2222 235777899999999
Q ss_pred CCCCeEE-EeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCccccccc
Q psy4577 308 SLNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 308 ~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
++ .+|+ +|+.||.|++||+.+++. .+..+.. |...|++++|+|++..+++.|.
T Consensus 278 ~~-~~l~~~g~~dg~i~i~d~~~~~~------~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 278 DT-NIVYLCGKGDSSIRYFEITSEAP------FLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp TT-TEEEEEETTCSCEEEEEECSSTT------CEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred CC-CEEEEEEcCCCeEEEEEecCCCc------ceEeecccccCCcccceEEecccccceecce
Confidence 98 5775 566899999999998761 2555555 4589999999999998776654
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=6.7e-31 Score=229.62 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=169.9
Q ss_pred CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577 42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE 121 (384)
Q Consensus 42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (384)
..+..++.||.+.|++++|+|+++ +|+||+.|++|++||+.+++ ... .+.+| .
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~-------------~~~-----------~~~~h--~ 108 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQ-------------KTH-----------AIKLH--C 108 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE-------------EEE-----------EEECC--C
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-------------cce-----------EEecC--C
Confidence 567788999999999999999999 78899999999999997741 111 22333 5
Q ss_pred cCeeEEEEecCceeee----cceeeeeccccccc-------cceeecccccccceeeeeccCCCCCCCCccceeEEEEee
Q psy4577 122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL-------YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGT 190 (384)
Q Consensus 122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (384)
..|.+++|+|+++.++ |+.+++|++..... ...+.++..
T Consensus 109 ~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~------------------------------ 158 (380)
T 3iz6_a 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------------------------------ 158 (380)
T ss_dssp TTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS------------------------------
T ss_pred CCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCc------------------------------
Confidence 5688999999999988 99999999854321 111111111
Q ss_pred eccCCCCeEEEEEeecCCCC-cccccccccCcCCCCCCccCCCCceeEEEE-----eecCCceEEEEEcCCCCcEEEEEe
Q psy4577 191 HTSDEQNHLLIASVQLPNED-AQFDASNYDTDKGDFGGFGSVSGKIEIEIK-----INHEGEVNRARYMPQNPCVIATKT 264 (384)
Q Consensus 191 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~s 264 (384)
.+..+.+.+++ ..+.....|...+.|+... +. ..... .+|...|.+++|+|.+.++|++|+
T Consensus 159 ---------~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~---~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 159 ---------YASSCQYVPDQETRLITGSGDQTCVLWDVTT---GQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp ---------CCCCCBCCSSSSSCEEEECTTSCEEEECTTT---CC-EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred ---------ceEEEEEecCCCCEEEEECCCCcEEEEEcCC---Cc-EEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 11122222221 1233333444444432211 11 12222 468899999999884446999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577 265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344 (384)
Q Consensus 265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 344 (384)
.|++|++||++. ...++..+.+|...|++++|+|++ .+|+||+.||+|++||+++++ ++..+.
T Consensus 226 ~D~~v~~wd~~~---------~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~-------~~~~~~ 288 (380)
T 3iz6_a 226 CDTTVRLWDLRI---------TSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH-------QLQVYN 288 (380)
T ss_dssp TTSCEEEEETTT---------TCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE-------EEEEEC
T ss_pred CCCeEEEEECCC---------CCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc-------EEEEec
Confidence 999999999862 223566889999999999999998 799999999999999999987 666665
Q ss_pred ccC-------CcEeEEEEecCCCccccccc
Q psy4577 345 GHT-------AVVELELIERLTKKADPVCT 367 (384)
Q Consensus 345 ~h~-------~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+. ..|++++|+|++..+++.+.
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred ccccccccccCceEEEEECCCCCEEEEEEC
Confidence 432 35899999999998776643
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=4.3e-31 Score=229.73 Aligned_cols=266 Identities=15% Similarity=0.219 Sum_probs=187.8
Q ss_pred CCCCCCCC---ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCe
Q psy4577 1 VQWSPHNE---TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp~~~---~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~ 76 (384)
++|+|++. .+||+|+.||.|+|||+.+ .+.+..+.+|...|++++|+| ++. +|++++.|++
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~ 139 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPIT--------------MQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHA 139 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTT--------------CCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSC
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchh--------------ceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCe
Confidence 36888832 3899999999999999986 366777889999999999999 667 8899999999
Q ss_pred EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577 77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~ 152 (384)
|++||+..++ .+..+. .+.+| ...|.+++|+|++..++ |+.+++||+......
T Consensus 140 i~iwd~~~~~-------------~~~~~~--------~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 140 LRLWNIQTDT-------------LVAIFG--------GVEGH--RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp EEEEETTTTE-------------EEEEEC--------STTSC--SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred EEEEEeecCe-------------EEEEec--------ccccc--cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 9999997751 111111 01223 66799999999998887 899999999765443
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
..+... ..+.++.... .......
T Consensus 197 ~~~~~~--------~~~~~~~~~~-------------------------------------~~~~~~~------------ 219 (366)
T 3k26_A 197 NAIKES--------YDYNPNKTNR-------------------------------------PFISQKI------------ 219 (366)
T ss_dssp HHHHHH--------HTCCGGGCSS-------------------------------------CCCCEEE------------
T ss_pred ccccee--------EEecCCCCcc-------------------------------------cccceee------------
Confidence 222110 1111111000 0000000
Q ss_pred CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC----CCCCCccceeeecCCCCceEEEEeCCC
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP----DPNGECHPDLRLRGHQKEGYGLSWNPS 308 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~s~~ 308 (384)
..........|...|.+++|+ + .++++++.||.|++||++...... ........+..+.+|...|++++|+|+
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD 296 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred ccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence 001123334689999999998 5 489999999999999997432110 001112346678889999999999999
Q ss_pred --CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc--CCcEeEEEEecCCCcccccccc
Q psy4577 309 --LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH--TAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 309 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
+ .+|++|+.||.|++||+++++... .....+.+| ...|++++|+|+++.+++.+..
T Consensus 297 ~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 297 FWQ-KMLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp TTS-SEEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CCC-cEEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 8 799999999999999999876111 133467777 7999999999999988876544
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=3e-30 Score=222.43 Aligned_cols=239 Identities=16% Similarity=0.175 Sum_probs=169.9
Q ss_pred eeEEEecccccceEEEEE-----cc-CCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCccccccee
Q psy4577 43 ELLFIHGGHTAKISDFSW-----NP-NEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVM 116 (384)
Q Consensus 43 ~~~~~~~gh~~~V~~l~~-----~~-~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (384)
.+..++.||.+.|++++| ++ +++ +|+||+.|++|++||+...+... ........+.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~-----------------~~~~~~~~l~ 73 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNG-----------------YFGIPHKALT 73 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSS-----------------BSEEEEEEEC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccc-----------------ccccccchhc
Confidence 456778999999999999 77 777 88999999999999997642100 0001112344
Q ss_pred eeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeec
Q psy4577 117 THALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHT 192 (384)
Q Consensus 117 ~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (384)
+| ...|.+++|+|++..++ |+++++||+.+......+..+..
T Consensus 74 ~h--~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-------------------------------- 119 (343)
T 2xzm_R 74 GH--NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-------------------------------- 119 (343)
T ss_dssp CC--SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS--------------------------------
T ss_pred cC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence 56 67899999999998887 99999999987655444333322
Q ss_pred cCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE--EEeecCCceEEEEEcCCCC---------cEEE
Q psy4577 193 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE--IKINHEGEVNRARYMPQNP---------CVIA 261 (384)
Q Consensus 193 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~~p~~~---------~~l~ 261 (384)
.+.++.+++++..++....|...+.|... +..... ....|...|.+++|+|++. .+|+
T Consensus 120 -------~v~~v~~sp~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 120 -------EVYSVAFSPDNRQILSAGAEREIKLWNIL----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp -------CEEEEEECSSTTEEEEEETTSCEEEEESS----SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred -------cEEEEEECCCCCEEEEEcCCCEEEEEecc----CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 23444444444444444445544444321 111111 1126888999999999862 3899
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577 262 TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 341 (384)
Q Consensus 262 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 341 (384)
+++.||.|++||.+ . .....+.+|...|++++|+|+| .+|++|+.||+|++||+..... +..
T Consensus 189 s~~~d~~i~iwd~~---------~--~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~------~~~ 250 (343)
T 2xzm_R 189 SVGWDGRLKVWNTN---------F--QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTY------PQR 250 (343)
T ss_dssp EEETTSEEEEEETT---------T--EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSS------CSE
T ss_pred EEcCCCEEEEEcCC---------C--ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcc------cce
Confidence 99999999999953 2 2455788999999999999999 7999999999999999965431 334
Q ss_pred eeeccCCcEeEEEEecCCCccc
Q psy4577 342 IFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 342 ~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
.+ .+...|++++|+|++..++
T Consensus 251 ~~-~~~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 251 EF-DAGSTINQIAFNPKLQWVA 271 (343)
T ss_dssp EE-ECSSCEEEEEECSSSCEEE
T ss_pred ee-cCCCcEEEEEECCCCCEEE
Confidence 33 3556799999999987654
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-31 Score=235.67 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=161.7
Q ss_pred CCCCCCC-----CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC
Q psy4577 1 VQWSPHN-----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 75 (384)
Q Consensus 1 v~fsp~~-----~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~ 75 (384)
|+|+|++ ..+||+|+.||+|+|||+.......... . ........+.+|...|++++|++++ .|++|+.||
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~--~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~Dg 287 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-K--MCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNG 287 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-E--CCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTS
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-e--eecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCC
Confidence 4688861 2489999999999999997532100000 0 0012234678999999999999863 688999999
Q ss_pred eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEE--EEecCc-eeee----cceeeeecccc
Q psy4577 76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA--QWLPDV-TRVI----NEEYKIWKKNT 148 (384)
Q Consensus 76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~----d~~v~~w~~~~ 148 (384)
+|++||+.+++. ....+.+| ...|.++ .|+|++ ..++ |+++++||+++
T Consensus 288 tV~lWD~~~~~~-----------------------~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 288 FVAEFDLTDPEV-----------------------PSFYDQVH--DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp EEEEEETTBCSS-----------------------CSEEEECS--SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred EEEEEECCCCCC-----------------------ceEEeecc--cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 999999976310 11123455 6678888 578887 6666 99999999865
Q ss_pred ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF 228 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 228 (384)
......+
T Consensus 343 ~~~~~~~------------------------------------------------------------------------- 349 (524)
T 2j04_B 343 IATTKTT------------------------------------------------------------------------- 349 (524)
T ss_dssp HHHHCEE-------------------------------------------------------------------------
T ss_pred CCccccc-------------------------------------------------------------------------
Confidence 4331110
Q ss_pred cCCCCceeEEEEeecC--CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577 229 GSVSGKIEIEIKINHE--GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN 306 (384)
Q Consensus 229 ~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 306 (384)
.+|. ..|.+++|+|+++ .+++++.|++|++||++ .+. .+..+.+|.+.|++|+|+
T Consensus 350 ------------~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~--------~~~--~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 350 ------------VSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSR--------AAF--AVHPLVSRETTITAIGVS 406 (524)
T ss_dssp ------------EEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETT--------CTT--CCEEEEECSSCEEEEECC
T ss_pred ------------ccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECc--------ccc--cceeeecCCCceEEEEeC
Confidence 0122 2478899999996 79999999999999986 332 345678999999999999
Q ss_pred CCCCCeEEEeeCCCcEEEEecCCCCCCC----------------------c---------------cccceeeeeccCCc
Q psy4577 307 PSLNGYLLSASDDHTICLWDINATPKEN----------------------R---------------VIDAKTIFTGHTAV 349 (384)
Q Consensus 307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----------------------~---------------~~~~~~~~~~h~~~ 349 (384)
|++ .+|+||+.||+|++||+....... . .-..+.++.+|...
T Consensus 407 p~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 407 RLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp SSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCS
T ss_pred CCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCce
Confidence 999 699999999999999975421110 0 00124456678888
Q ss_pred EeEEEEecCCC
Q psy4577 350 VELELIERLTK 360 (384)
Q Consensus 350 v~~~~~sp~~~ 360 (384)
|++|+|||+++
T Consensus 486 V~~Vafsp~~~ 496 (524)
T 2j04_B 486 ITCTKWNETSA 496 (524)
T ss_dssp CCCEEECCSTT
T ss_pred EEEEECCCCCC
Confidence 99999999875
No 67
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.3e-30 Score=228.71 Aligned_cols=248 Identities=13% Similarity=0.060 Sum_probs=157.7
Q ss_pred CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--------CCCcEEEEEecCC
Q psy4577 4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--------NEPWVICSVSEDN 75 (384)
Q Consensus 4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--------~~~~~l~s~s~D~ 75 (384)
+|++ .+||+|+.|++|+|||+..... .....+..+.||.+.|++|+|+| +++ +|||||.|+
T Consensus 98 ~~~~-~~las~~~d~~v~lw~~~~~~~---------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~ 166 (393)
T 4gq1_A 98 PVYS-LFLACVCQDNTVRLIITKNETI---------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDC 166 (393)
T ss_dssp CEEE-EEEEEEETTSCEEEEEEETTEE---------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTS
T ss_pred CCCC-CEEEEEeCCCcEEEEECCCCcc---------ceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCC
Confidence 3344 4899999999999999876210 00123445789999999999998 667 899999999
Q ss_pred eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce-eee----cceeeeecccccc
Q psy4577 76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPF 150 (384)
Q Consensus 76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~ 150 (384)
+|||||+..+. .+ ..+.+| ..++.+++|+|++. .++ |+++++||.....
T Consensus 167 tv~~Wd~~~~~-------------~~-----------~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 167 TLIIWRLTDEG-------------PI-----------LAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEEETTE-------------EE-----------EEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred eEEEEECCCCc-------------ee-----------eeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 99999997641 00 012233 56789999999986 454 9999999987654
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
.............. .+.....
T Consensus 221 ~~~~~~~~~~~~~~-----------------------------------~~~s~~~------------------------ 241 (393)
T 4gq1_A 221 SAEENSQTELVKNP-----------------------------------WLLTLNT------------------------ 241 (393)
T ss_dssp ----------CSCC-----------------------------------CSEEEES------------------------
T ss_pred ccccccccCCcccc-----------------------------------eEEeccc------------------------
Confidence 42211111000000 0000000
Q ss_pred CCCceeEEEEeecCCceEEEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce---------
Q psy4577 231 VSGKIEIEIKINHEGEVNRARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG--------- 300 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i--------- 300 (384)
..........+|...+.++.|+ |++. .+++++.|+++++||+..... ...+..|...+
T Consensus 242 -~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~----------~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 242 -LPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANND----------YNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp -GGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-----------------------------CCSCSE
T ss_pred -ccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCC----------CceEeeecCccccEEEcccc
Confidence 0000122234688889999987 6775 999999999999999863221 11222222222
Q ss_pred ---------EEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 301 ---------YGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 301 ---------~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
....|+| .+..++++|+.||+|++||+.+++ +...+.+|..+|++++|||||+.+++..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-------~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-------SNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-------CCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-------EEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 2233333 332467888899999999999988 7778888999999999999999987654
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=243.22 Aligned_cols=236 Identities=16% Similarity=0.157 Sum_probs=181.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~ 78 (384)
++|+|+++ +||+|+.||+|+|||+.... ......+.+|.+.|++++|+|+ +. +|++|+.||+|+
T Consensus 15 l~~s~dg~-~latg~~dg~I~vwd~~~~~------------~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~ 80 (753)
T 3jro_A 15 AVLDYYGK-RLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVL 80 (753)
T ss_dssp ECCCSSSC-CEEEEETTTEEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCEE
T ss_pred EEECCCCC-eEEEEECCCcEEEEecCCCC------------CccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeEE
Confidence 57999997 79999999999999987411 3667788999999999999988 77 889999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~ 152 (384)
+||+.+++. . ....+.+| ...|.+++|+|+ +..++ |+.+++||+......
T Consensus 81 vwd~~~~~~-------------~---------~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 81 IWKEENGRW-------------S---------QIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp EEEEETTEE-------------E---------EEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred EEECCCCcc-------------c---------ccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 999977410 0 00122233 667999999999 77776 889999987543210
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
.
T Consensus 137 ~------------------------------------------------------------------------------- 137 (753)
T 3jro_A 137 S------------------------------------------------------------------------------- 137 (753)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CceeEEEEeecCCceEEEEEcCC-------------CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQ-------------NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~-------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 299 (384)
.....+|...|.+++|+|. + .++++|+.||.|++||++.. .........+.+|..+
T Consensus 138 ----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~------~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSD------AQTYVLESTLEGHSDW 206 (753)
T ss_dssp ----CEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETT------TTEEEEEEEECCCSSC
T ss_pred ----eeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCC------cccceeeeeecCCCCc
Confidence 1122357788899999984 6 48999999999999999731 1112445678899999
Q ss_pred eEEEEeCCC---CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 300 GYGLSWNPS---LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 300 i~~~~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
|++++|+|+ + .+|++|+.||+|++||+++++. .....+....+|...|++++|+|+++.+++.+.
T Consensus 207 V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 207 VRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQG--PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp EEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSS--CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred EEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCC--cceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 999999999 7 7999999999999999998641 111133344568999999999999998776543
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.8e-30 Score=230.29 Aligned_cols=277 Identities=7% Similarity=0.027 Sum_probs=179.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +||+|+.|+.|++||+.+. +....+.+| ..+....|+|++. +|++++.|+.|++|
T Consensus 62 ~~~s~~g~-~l~~~~~d~~v~i~d~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 62 NTFEKVGS-HLYKARLDGHDFLFNTIIR--------------DGSKMLKRA-DYTAVDTAKLQMR-RFILGTTEGDIKVL 124 (420)
T ss_dssp CEEEEEET-TEEEEEETTEEEEEECCSE--------------ETTTTSCSC-CEEEEEEECSSSC-EEEEEETTSCEEEE
T ss_pred eeeeecCC-eEEEEEcCCcEEEEEeccc--------------ceeeEEecC-CceEEEEEecCCC-EEEEEECCCCEEEE
Confidence 57999997 7999999999999999762 222233445 3455557899998 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..++ .. ..+.+| ...|.+++|+|+++.++ |+++++||+........+.
T Consensus 125 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 125 DSNFNL-------------QR-----------EIDQAH--VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp CTTSCE-------------EE-----------EETTSS--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred eCCCcc-------------ee-----------eecccc--cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 987641 11 112234 67899999999998887 8999999998766554444
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce-
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI- 235 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~- 235 (384)
.+.. ++.++.|.|+.. .+..+.. ...+.++.+.- +..... +.... ......
T Consensus 179 ~h~~--~v~~~~~~~~~~----------~l~s~~~----d~~v~iwd~~~---~~~~~~--~~~~~-------~~~~~v~ 230 (420)
T 3vl1_A 179 GHRA--TVTDIAIIDRGR----------NVLSASL----DGTIRLWECGT---GTTIHT--FNRKE-------NPHDGVN 230 (420)
T ss_dssp CCSS--CEEEEEEETTTT----------EEEEEET----TSCEEEEETTT---TEEEEE--ECBTT-------BTTCCEE
T ss_pred CCCC--cEEEEEEcCCCC----------EEEEEcC----CCcEEEeECCC---CceeEE--eecCC-------CCCCCcc
Confidence 4432 244555555432 1111111 12223332210 000000 00000 000000
Q ss_pred eEEE--------EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577 236 EIEI--------KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP 307 (384)
Q Consensus 236 ~~~~--------~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 307 (384)
.... ...+...+.+++|+|++. +|++|+.||.|++||++ .+.. ......+|...|++++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~--------~~~~-~~~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVF--------SKEQ-TIQLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETT--------TCCE-EEEECCTTSSCEEEEEECS
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECC--------CCce-eEEcccccCCCceeEEEeC
Confidence 0000 011346677777889984 99999999999999996 3322 2233456889999999999
Q ss_pred CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccccc
Q psy4577 308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPV 365 (384)
Q Consensus 308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~ 365 (384)
++..+|++|+.||.|++||+++++. ++..+.+ |...|+++.| |++..+++.
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTS------CSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcC------chhhhhccCCCCceEEEe-CCCCEEEEe
Confidence 9833999999999999999998752 5777776 6778888855 566655544
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.1e-29 Score=212.59 Aligned_cols=194 Identities=18% Similarity=0.306 Sum_probs=150.2
Q ss_pred EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577 46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL 125 (384)
Q Consensus 46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 125 (384)
..+.+|.+.|++++|+|+|+ +||+|+.|++|++||+.... ..+...+.+| ..+|.
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~----------------------~~~~~~l~gH--~~~V~ 57 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGPVW 57 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSC----------------------BCCCEEECCC--SSCEE
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCC----------------------cEEEEEEccc--cCCeE
Confidence 45679999999999999999 88999999999999986420 0112345566 67899
Q ss_pred EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577 126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL 199 (384)
Q Consensus 126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (384)
+++|+|+ ++.++ |++|++||.......
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~----------------------------------------------- 90 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWS----------------------------------------------- 90 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-----------------------------------------------
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-----------------------------------------------
Confidence 9999864 66766 999999987532110
Q ss_pred EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577 200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH 277 (384)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~ 277 (384)
.......|...|++++|+|+ + .+|++|+.|+.|++||++.
T Consensus 91 ------------------------------------~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~- 132 (297)
T 2pm7_B 91 ------------------------------------QIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKE- 132 (297)
T ss_dssp ------------------------------------CCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCS-
T ss_pred ------------------------------------EEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecC-
Confidence 01122357888999999997 6 4999999999999999962
Q ss_pred CCCCCCCCCccceeeecCCCCceEEEEeCCCC------------CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577 278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL------------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 345 (384)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 345 (384)
........+.+|...|.+++|+|++ .++|++|+.|++|++||+++++. ......++.+
T Consensus 133 -------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~---~~~~~~~l~~ 202 (297)
T 2pm7_B 133 -------NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLEG 202 (297)
T ss_dssp -------SSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT---EEEEEEEECC
T ss_pred -------CCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc---eEEEEEEecC
Confidence 2222235678999999999999972 16999999999999999987642 1124567889
Q ss_pred cCCcEeEEEEecCC
Q psy4577 346 HTAVVELELIERLT 359 (384)
Q Consensus 346 h~~~v~~~~~sp~~ 359 (384)
|...|++++|+|++
T Consensus 203 H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 203 HSDWVRDVAWSPTV 216 (297)
T ss_dssp CSSCEEEEEECCCC
T ss_pred CCCceEEEEECCCC
Confidence 99999999999996
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=3.2e-29 Score=215.78 Aligned_cols=240 Identities=16% Similarity=0.132 Sum_probs=169.7
Q ss_pred eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577 43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW 122 (384)
Q Consensus 43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (384)
++..+|.||.+.|++|+|+|++..+|+|||.|++|++||+...+. ........+.+| ..
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-------------------~~~~~~~~l~~h--~~ 87 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-------------------NYGIPQRALRGH--SH 87 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-------------------CSEEEEEEECCC--SS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-------------------ccceeeEEEeCC--CC
Confidence 566789999999999999998655899999999999999976421 111122244455 67
Q ss_pred CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
.|.+++|+|+++.++ |+.+++|+................
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------------------------------- 130 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------------------------------- 130 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------------------------------
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------------------------------
Confidence 899999999999887 899999998765443322221111
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCC-cEEEEEeCCCcEEEEecCCC
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP-CVIATKTPSSDVLVFDYTKH 277 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~~~~ 277 (384)
+....+.+.+..+.....|.....|.. ...........+|...+..++|++++. .++++++.|+.|++||++
T Consensus 131 --~~~~~~~~~~~~l~s~s~d~~~~~~d~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-- 203 (340)
T 4aow_A 131 --VLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-- 203 (340)
T ss_dssp --EEEEEECTTSSCEEEEETTSCEEEECT---TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT--
T ss_pred --eeEEEEeecCccceeecCCCeEEEEEe---CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC--
Confidence 111111222222222223333222211 011222333457889999999998753 378899999999999986
Q ss_pred CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577 278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER 357 (384)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 357 (384)
.+ ..+..+.+|.++|++++|+|++ .+|++|+.||+|++||+++.+ ++..+.++ ..|++++|+|
T Consensus 204 ------~~--~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~-------~~~~~~~~-~~v~~~~~~~ 266 (340)
T 4aow_A 204 ------NC--KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK-------HLYTLDGG-DIINALCFSP 266 (340)
T ss_dssp ------TT--EEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------EEEEEECS-SCEEEEEECS
T ss_pred ------CC--ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc-------eeeeecCC-ceEEeeecCC
Confidence 33 3456888999999999999998 799999999999999999987 77777654 6799999999
Q ss_pred CCCcccc
Q psy4577 358 LTKKADP 364 (384)
Q Consensus 358 ~~~~~~~ 364 (384)
++..+.+
T Consensus 267 ~~~~~~~ 273 (340)
T 4aow_A 267 NRYWLCA 273 (340)
T ss_dssp SSSEEEE
T ss_pred CCceeec
Confidence 8875543
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.3e-29 Score=220.40 Aligned_cols=247 Identities=15% Similarity=0.213 Sum_probs=171.6
Q ss_pred CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE-----EecccccceEEEEEccCCCcEEEEEecC
Q psy4577 1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-----IHGGHTAKISDFSWNPNEPWVICSVSED 74 (384)
Q Consensus 1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~~l~s~s~D 74 (384)
|+|+| ++. +||+|+.||.|+|||+.+....... ...... ...+|...|++++|+|++..+|++++.|
T Consensus 49 ~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 49 LDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYY------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp EEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCE------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred EEEecCCCC-EEEEEcCCCeEEEEECCCCcccceE------eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 47999 776 8999999999999999863211000 000000 0136999999999999544488899999
Q ss_pred CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce---eee----cceeeeeccc
Q psy4577 75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT---RVI----NEEYKIWKKN 147 (384)
Q Consensus 75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~----d~~v~~w~~~ 147 (384)
+.|++||+.+++ ....+. ....+.++.|+|.+. .++ ++.+++|++.
T Consensus 122 ~~i~iwd~~~~~-------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 122 KTLKVWDTNTLQ-------------TADVFN--------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp SEEEEEETTTTE-------------EEEEEE--------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred CeEEEeeCCCCc-------------cceecc--------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999998751 111111 144577888888553 444 6777777654
Q ss_pred cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577 148 TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG 227 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~ 227 (384)
....
T Consensus 175 ~~~~---------------------------------------------------------------------------- 178 (408)
T 4a11_B 175 SGSC---------------------------------------------------------------------------- 178 (408)
T ss_dssp SSCC----------------------------------------------------------------------------
T ss_pred Ccce----------------------------------------------------------------------------
Confidence 3211
Q ss_pred ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC------CCCCCccceeeecCCCCceE
Q psy4577 228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP------DPNGECHPDLRLRGHQKEGY 301 (384)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~h~~~i~ 301 (384)
......|...|.+++|+|+++.+|++|+.||.|++||++...... ...........+.+|...|.
T Consensus 179 ---------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 179 ---------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp ---------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred ---------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 122336788899999999997679999999999999997422100 00001111223367899999
Q ss_pred EEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC----------------------------------------cccccee
Q psy4577 302 GLSWNPSLNGYLLSASDDHTICLWDINATPKEN----------------------------------------RVIDAKT 341 (384)
Q Consensus 302 ~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----------------------------------------~~~~~~~ 341 (384)
+++|+|++ .+|++++.||.|++||+++++... ..-.++.
T Consensus 250 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 250 GLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 99999998 799999999999999998764210 0112466
Q ss_pred eeeccCCcEeEEEEecCCCccccccc
Q psy4577 342 IFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 342 ~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.+.+|...|++++|+|+++.+++.+.
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEET
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECC
Confidence 67889999999999999988776643
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=230.60 Aligned_cols=280 Identities=11% Similarity=0.111 Sum_probs=179.5
Q ss_pred CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
|+|+| ++. +||+|+.||+|+|||+.+... .........+ +|.+.|++++|+|++. +|++++.|++|++
T Consensus 69 ~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~--------~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~v 137 (437)
T 3gre_A 69 SAVSPGETP-YLITGSDQGVIKIWNLKEIIV--------GEVYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIV 137 (437)
T ss_dssp EEEECSSSC-EEEEEETTSEEEEEEHHHHHT--------TCCCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred EEECCCCCC-EEEEecCCceEEEeECccccc--------Ccccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEE
Confidence 47899 886 899999999999999864110 0001112222 5899999999999998 8889999999999
Q ss_pred EEcc---cCCCccchhheeeeeeeEEEeccCCcccccceeeee--eccCeeEEE--EecCceeee----cceeeeecccc
Q psy4577 80 LSVV---CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHA--LEWPSLTAQ--WLPDVTRVI----NEEYKIWKKNT 148 (384)
Q Consensus 80 wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~~~----d~~v~~w~~~~ 148 (384)
||+. .++.. +..... . + ..+..+. ....+.++. +++++..++ |+.+++||+..
T Consensus 138 wd~~~~~~~~~~-------------~~~~~~-~-i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 138 LKVNHYQQESEV-------------KFLNCE-C-I-RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp EEEEEEEETTEE-------------EEEEEE-E-E-EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred EEeccccCCcee-------------eccccc-e-e-EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 9995 22111 000000 0 0 0010011 244566666 557888877 89999999987
Q ss_pred ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF 228 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 228 (384)
......+....... .+.++.+++++..+.....|.....|+.
T Consensus 202 ~~~~~~~~~~~h~~-------------------------------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~- 243 (437)
T 3gre_A 202 LERLQIIENSPRHG-------------------------------------AVSSICIDEECCVLILGTTRGIIDIWDI- 243 (437)
T ss_dssp CCEEEEEECCGGGC-------------------------------------CEEEEEECTTSCEEEEEETTSCEEEEET-
T ss_pred CeeeEEEccCCCCC-------------------------------------ceEEEEECCCCCEEEEEcCCCeEEEEEc-
Confidence 65544433311111 2333444444444444444444444322
Q ss_pred cCCCCceeEEEE-eecCCceEEEEEcC----CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccce-------------
Q psy4577 229 GSVSGKIEIEIK-INHEGEVNRARYMP----QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPD------------- 290 (384)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~~v~~v~~~p----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------- 290 (384)
......... ..|...|.+++|+| ++ .+|++|+.||.|++||++. +.....
T Consensus 244 ---~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 244 ---RFNVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVK--------GHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp ---TTTEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTT--------TEEEEEEESSSSCCCGGGG
T ss_pred ---CCccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCC--------CcEEEEEEcCCCCCcccee
Confidence 112223333 36788999996665 45 4999999999999999962 221110
Q ss_pred ---------eeecC--CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--------------
Q psy4577 291 ---------LRLRG--HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-------------- 345 (384)
Q Consensus 291 ---------~~~~~--h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------- 345 (384)
..+.+ |...|++++|+ ++ .+|++|+.||.|++||+++++ ....+.+
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELS-------SSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGG-------GCEEEECC--CCCEEEEEEEE
T ss_pred cccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcc-------cceEEecccccCceEEEEEee
Confidence 02333 77789999999 66 699999999999999999887 5555544
Q ss_pred -----------------------cCCcEeEEEEecC--CCcccccc
Q psy4577 346 -----------------------HTAVVELELIERL--TKKADPVC 366 (384)
Q Consensus 346 -----------------------h~~~v~~~~~sp~--~~~~~~~c 366 (384)
|...|++++|+++ ++.+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 383 ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred cceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 8899999999998 44444443
No 74
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-29 Score=222.87 Aligned_cols=263 Identities=15% Similarity=0.178 Sum_probs=180.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||... ..+..+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus 114 ~~~s~~~~-~l~~~~~dg~i~i~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 114 LAWSHDGN-SIVTGVENGELRLWNKTG---------------ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILW 176 (425)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTS---------------CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCC---------------CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEE
Confidence 47999997 899999999999999442 66777889999999999999999 77899999999999
Q ss_pred EcccCCCccchh--------------------------------heeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577 81 SVVCVEPFDDAV--------------------------------EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 128 (384)
Q Consensus 81 d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 128 (384)
|+.+++...... .....++.+.+|+.........+.+| ...+.+++
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~ 254 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLE 254 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEE
Confidence 997763211000 00112456777776655443444444 56788888
Q ss_pred EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577 129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV 204 (384)
Q Consensus 129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 204 (384)
|+|+++.++ ++.+++|+.........+..+.. ++..+.|.+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~--------------------------------- 299 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVG--------------------------------- 299 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS--CEEEEEEET---------------------------------
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc--cEEEEEECC---------------------------------
Confidence 888887776 78888888876554433322211 122333332
Q ss_pred ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC--
Q psy4577 205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD-- 282 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-- 282 (384)
++ .+.....|.....|.. ...........|...|.+++|+|++. +|++++.||.|++||++.......
T Consensus 300 ----~~-~l~~~~~d~~i~i~d~----~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 300 ----DD-KVISCSMDGSVRLWSL----KQNTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp ----TT-EEEEEETTSEEEEEET----TTTEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC-----
T ss_pred ----CC-EEEEEeCCCcEEEEEC----CCCcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeee
Confidence 22 2222223332222211 11223555667899999999999995 999999999999999863110000
Q ss_pred ---C-----CCCccceeeecCCCC--ceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577 283 ---P-----NGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLSASDDHTICLWDIN 328 (384)
Q Consensus 283 ---~-----~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~ 328 (384)
. .....++..+.+|.. .|++++|+|++ .+|++++.||.|++||++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred ecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEEeec
Confidence 0 000115668888976 99999999998 799999999999999986
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=2.8e-29 Score=215.79 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=183.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+|+ ++|++..++.+.+|+... ........+|.+.|++++|+|+++ +|++++ |+.|++|
T Consensus 15 ~~~s~dg~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw 77 (337)
T 1gxr_A 15 FHVTADGQ-MQPVPFPPDALIGPGIPR--------------HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVW 77 (337)
T ss_dssp EEECSSSC-EEECCCCTTSSSSTTCCS--------------EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEE
T ss_pred EEECCCCC-EEEeecCCCcEeccccCC--------------ccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEE
Confidence 47999998 788888777777776543 122333358999999999999999 777888 9999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..++.. .. ...+..+.....+.+++|+|+++.++ ++.+++|+...........
T Consensus 78 ~~~~~~~~-------------------~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 136 (337)
T 1gxr_A 78 DISHPGNK-------------------SP--VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp ETTSTTCC-------------------SC--SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred ECCCCCce-------------------ee--eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence 99774211 00 01111112366799999999998877 8999999987654211111
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
......++..+.| ++++..+.....|.....|.. .....
T Consensus 137 ~~~~~~~i~~~~~-------------------------------------~~~~~~l~~~~~dg~v~~~d~----~~~~~ 175 (337)
T 1gxr_A 137 LTSSAPACYALAI-------------------------------------SPDSKVCFSCCSDGNIAVWDL----HNQTL 175 (337)
T ss_dssp EECSSSCEEEEEE-------------------------------------CTTSSEEEEEETTSCEEEEET----TTTEE
T ss_pred cccCCCceEEEEE-------------------------------------CCCCCEEEEEeCCCcEEEEeC----CCCce
Confidence 1111111223333 333333333333333322211 12223
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
......|...|.+++|+|++. +|++++.||.|++||++ .+. .+..+ .|...+.+++|+|++ .+|+++
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~--------~~~--~~~~~-~~~~~v~~~~~s~~~-~~l~~~ 242 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLR--------EGR--QLQQH-DFTSQIFSLGYCPTG-EWLAVG 242 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TTE--EEEEE-ECSSCEEEEEECTTS-SEEEEE
T ss_pred eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECC--------CCc--eEeee-cCCCceEEEEECCCC-CEEEEE
Confidence 455567999999999999995 99999999999999986 332 23233 477889999999998 799999
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+.|+.|++||+++.+ . ..+..|...|++++|+|+++.+++.+
T Consensus 243 ~~~~~i~~~~~~~~~-------~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 243 MESSNVEVLHVNKPD-------K-YQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp ETTSCEEEEETTSSC-------E-EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCcEEEEECCCCC-------e-EEEcCCccceeEEEECCCCCEEEEec
Confidence 999999999999874 3 45778999999999999999776654
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2e-29 Score=222.00 Aligned_cols=237 Identities=16% Similarity=0.285 Sum_probs=169.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.||.|+|||+.+ .+.+..+.+|...|.+++|+ +. +|++++.|+.|++|
T Consensus 140 v~~s~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 140 VKWSHDGS-FLSVGLGNGLVDIYDVES--------------QTKLRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHH 201 (401)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEECCCCeEEEEECcC--------------CeEEEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEE
Confidence 47999997 899999999999999986 36677888999999999995 34 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+..... ....+.+| ...|.+++|+|++..++ |+.|++||+........+.
T Consensus 202 d~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 202 DVRIANH-----------------------QIGTLQGH--SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT 256 (401)
T ss_dssp ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred ecccCcc-----------------------eeeEEcCC--CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence 9974310 01123334 66799999999998887 8999999998755443333
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.+.. +..++.|.|+.. ..+..+.. .....+.++.+. .+.
T Consensus 257 ~~~~--~v~~~~~~p~~~---------~ll~~~~g--s~d~~i~i~d~~--------------------------~~~-- 295 (401)
T 4aez_A 257 NHNA--AVKAVAWCPWQS---------NLLATGGG--TMDKQIHFWNAA--------------------------TGA-- 295 (401)
T ss_dssp CCSS--CCCEEEECTTST---------TEEEEECC--TTTCEEEEEETT--------------------------TCC--
T ss_pred CCcc--eEEEEEECCCCC---------CEEEEecC--CCCCEEEEEECC--------------------------CCC--
Confidence 3222 234455554332 01111100 011222222221 111
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEE--EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
......+...|.+++|+|+++ ++++ |+.||.|++||++ .+.......+.+|...|.+++|+|++ .+|+
T Consensus 296 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~--------~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~ 365 (401)
T 4aez_A 296 RVNTVDAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYS--------SSGLTKQVDIPAHDTRVLYSALSPDG-RILS 365 (401)
T ss_dssp EEEEEECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEE--------TTEEEEEEEEECCSSCCCEEEECTTS-SEEE
T ss_pred EEEEEeCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecC--------CccceeEEEecCCCCCEEEEEECCCC-CEEE
Confidence 222335778899999999996 7777 4589999999997 44455566788999999999999998 7999
Q ss_pred EeeCCCcEEEEecCCCC
Q psy4577 315 SASDDHTICLWDINATP 331 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~ 331 (384)
+++.||.|++||+.+++
T Consensus 366 s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 366 TAASDENLKFWRVYDGD 382 (401)
T ss_dssp EECTTSEEEEEECCC--
T ss_pred EEeCCCcEEEEECCCCc
Confidence 99999999999999887
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1e-29 Score=254.50 Aligned_cols=318 Identities=12% Similarity=0.100 Sum_probs=217.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. ++++++.|+.|++||+.+ ......+.+|.+.|++++|+|++. .|++++.|++|++|
T Consensus 846 ~~~sp~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 846 CDFSPYDH-LAVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVW 909 (1249)
T ss_dssp EEECSSTT-EEEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 46899997 799999999999999986 467788899999999999999999 78899999999999
Q ss_pred EcccCCCccchhheee----------------eeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cce
Q psy4577 81 SVVCVEPFDDAVEERV----------------INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEE 140 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~ 140 (384)
++.............. ....+..+....... .......+.+++|+|++..++ ++.
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE-----EEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE-----EEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 9865311110000000 001111222111111 111245688999999999887 899
Q ss_pred eeeeccccccccceeecccccccceeeeeccCCCC--CCCCccceeEEEEeeec--cCCCCeEEEEEeecCCCCcccccc
Q psy4577 141 YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR--PEGKDYSIHRLILGTHT--SDEQNHLLIASVQLPNEDAQFDAS 216 (384)
Q Consensus 141 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 216 (384)
+++|+............+.. ++.++.|.|++.. ....+..+..+.+.+.. ........+..+.+.++ +.+...
T Consensus 985 i~i~d~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 1061 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKK--AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLLSW 1061 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSS--CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCceeeecccCCC--ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCC-CcEEEE
Confidence 99999987766555444443 3455677776541 11122222221111100 01112223555555553 344555
Q ss_pred cccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC
Q psy4577 217 NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH 296 (384)
Q Consensus 217 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 296 (384)
..|.....|.. ..........+|.+.|.+++|+|+++ ++++++.||+|++||+. .+. ++..+.+|
T Consensus 1062 ~~dg~v~vwd~----~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iwd~~--------~~~--~~~~l~~h 1126 (1249)
T 3sfz_A 1062 SFDGTVKVWNV----ITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIWSFD--------LLS--PLHELKGH 1126 (1249)
T ss_dssp ESSSEEEEEET----TTTCCCEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEECSS--------SSS--CSBCCCCC
T ss_pred ECCCcEEEEEC----CCCceeEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEEECC--------Ccc--eeeeeccC
Confidence 55555554432 11222445668999999999999996 89999999999999986 332 45578899
Q ss_pred CCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee---------eccCCcEeEEEEecCCCccccc
Q psy4577 297 QKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF---------TGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 297 ~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
...|++++|+|++ .+|++|+.||+|++||+.+++ .+..+ .+|.+.|++++|+|++..+++.
T Consensus 1127 ~~~v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQ-------LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp SSCEEEEEECSSS-SEEEEEETTSCCCEEESSSSC-------CCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc-------eEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence 9999999999999 799999999999999999887 44443 6799999999999999987654
No 78
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=8.1e-29 Score=210.71 Aligned_cols=232 Identities=20% Similarity=0.288 Sum_probs=163.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|+.|+|||+.+ .+.+..+.+|...|.+++|+|++. +|++++.|++|++|
T Consensus 71 ~~~~~~~~-~l~s~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iw 134 (312)
T 4ery_A 71 VAWSSDSN-LLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIW 134 (312)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred EEEcCCCC-EEEEECCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Confidence 47999997 899999999999999986 366778889999999999999999 88899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++. +. .+..| ..++.+++|+|++..++ |+.+++||.........+.
T Consensus 135 d~~~~~~-------------~~-----------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 135 DVKTGKC-------------LK-----------TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp ETTTCCE-------------EE-----------EECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ECCCCEE-------------EE-----------EecCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe
Confidence 9977411 11 22233 56788999999998887 8999999997654432221
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.. ...+...+.| ++++..+.....|.....|+. .....
T Consensus 189 ~~-~~~~~~~~~~-------------------------------------~~~~~~l~~~~~d~~i~iwd~----~~~~~ 226 (312)
T 4ery_A 189 DD-DNPPVSFVKF-------------------------------------SPNGKYILAATLDNTLKLWDY----SKGKC 226 (312)
T ss_dssp CS-SCCCEEEEEE-------------------------------------CTTSSEEEEEETTTEEEEEET----TTTEE
T ss_pred cc-CCCceEEEEE-------------------------------------CCCCCEEEEEcCCCeEEEEEC----CCCcE
Confidence 11 1111222333 333333333333333332211 11122
Q ss_pred EEEEeecCCceE--EEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 237 IEIKINHEGEVN--RARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 237 ~~~~~~~~~~v~--~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
.....+|...+. ...++ +++ .+|++|+.||.|++||++ .+ ..+..+.+|...|.+++|+|++ .+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~~p~~-~~l 294 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQ--------TK--EIVQKLQGHTDVVISTACHPTE-NII 294 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEECSSS-SEE
T ss_pred EEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECC--------Cc--hhhhhhhccCCcEEEEeecCcC-Cce
Confidence 344445554432 23444 455 599999999999999986 33 3466889999999999999998 799
Q ss_pred EEee--CCCcEEEEecC
Q psy4577 314 LSAS--DDHTICLWDIN 328 (384)
Q Consensus 314 ~s~s--~Dg~i~iwd~~ 328 (384)
++++ .|++|++|+..
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 9987 69999999864
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.5e-28 Score=216.41 Aligned_cols=258 Identities=11% Similarity=0.185 Sum_probs=179.9
Q ss_pred CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577 6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC 84 (384)
Q Consensus 6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~ 84 (384)
++. .+++++.|+.|+|||+.+. +....+. .|...|++++|+|++. +|++|+.||.|++||+.+
T Consensus 102 s~~-~l~~~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 102 SNL-NVVAVALERNVYVWNADSG--------------SVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CTT-SEEEEEETTEEEEEETTTC--------------CEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred cCC-CEEEEECCCeEEEeeCCCC--------------cEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcC
Confidence 344 4778889999999999862 3333333 4889999999999999 788999999999999977
Q ss_pred CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-cccceeeccc
Q psy4577 85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYDLVMTHA 159 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~~~~~~~ 159 (384)
++. +. .+.+| ...|.+++|++ ..++ ++.+++||+... .....+..+.
T Consensus 166 ~~~-------------~~-----------~~~~~--~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 217 (401)
T 4aez_A 166 QTK-------------LR-----------TMAGH--QARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHS 217 (401)
T ss_dssp CCE-------------EE-----------EECCC--SSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred CeE-------------EE-----------EecCC--CCceEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence 411 11 22233 56788999954 4444 999999999742 2222222221
Q ss_pred ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577 160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI 239 (384)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 239 (384)
. .+..+.+++++..+.....|.....|+. ........
T Consensus 218 ~---------------------------------------~v~~~~~~~~~~~l~s~~~d~~v~iwd~----~~~~~~~~ 254 (401)
T 4aez_A 218 S---------------------------------------EVCGLAWRSDGLQLASGGNDNVVQIWDA----RSSIPKFT 254 (401)
T ss_dssp S---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TCSSEEEE
T ss_pred C---------------------------------------CeeEEEEcCCCCEEEEEeCCCeEEEccC----CCCCccEE
Confidence 1 2333334443333444444444333322 11223455
Q ss_pred EeecCCceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE--
Q psy4577 240 KINHEGEVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS-- 315 (384)
Q Consensus 240 ~~~~~~~v~~v~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s-- 315 (384)
...|...|.+++|+|++..++++++ .|+.|++||++ .+. ++..+. |...|.+++|+|++ .+|++
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--------~~~--~~~~~~-~~~~v~~~~~s~~~-~~l~~~~ 322 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--------TGA--RVNTVD-AGSQVTSLIWSPHS-KEIMSTH 322 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT--------TCC--EEEEEE-CSSCEEEEEECSSS-SEEEEEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC--------CCC--EEEEEe-CCCcEEEEEECCCC-CeEEEEe
Confidence 6689999999999998877888876 89999999986 332 344454 66789999999998 68888
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
|+.||.|++||+.+++. .....+.+|...|++++|+|+++.+++.+.
T Consensus 323 g~~dg~i~v~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGL-----TKQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp CTTTCEEEEEEEETTEE-----EEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred ecCCCcEEEEecCCccc-----eeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 44899999999998641 144456789999999999999998776643
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.4e-29 Score=235.82 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=178.4
Q ss_pred eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577 43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW 122 (384)
Q Consensus 43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (384)
.+...+.+|.+.|++|+|+|++..+|+|||.|++|++|++..... ........+.+| ..
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-------------------~~~~~~~~~~~h--~~ 431 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-------------------AYGVAQRRLTGH--SH 431 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-------------------CSCEEEEEEECC--SS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-------------------ccccccceecCC--CC
Confidence 445678899999999999998766899999999999999976311 011111244556 67
Q ss_pred CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
.|.+++|+|+++.++ |++|++||+........+..|..
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-------------------------------------- 473 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-------------------------------------- 473 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------------------------------
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC--------------------------------------
Confidence 899999999999887 89999999977654433333322
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE---EeecCCceEEEEEcCCCC-cEEEEEeCCCcEEEEec
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI---KINHEGEVNRARYMPQNP-CVIATKTPSSDVLVFDY 274 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~ 274 (384)
.|.++.+++++..+.....|...+.|... +...... ..+|...|.+++|+|++. .++++|+.|++|++||+
T Consensus 474 -~v~~~~~s~~~~~l~s~s~D~~i~iwd~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 474 -DVLSVAFSLDNRQIVSASRDRTIKLWNTL----GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp -CEEEEEECTTSSCEEEEETTSCEEEECTT----SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred -CEEEEEEeCCCCEEEEEeCCCEEEEEECC----CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 24445555555555555566655555321 1111111 136888999999999862 48999999999999998
Q ss_pred CCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEE
Q psy4577 275 TKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELEL 354 (384)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 354 (384)
+ .. .....+.+|.+.|++++|+|++ .+|+||+.||+|++||+++++ .+..+.. ...|.+++
T Consensus 549 ~--------~~--~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~-------~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 549 S--------NC--KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK-------KLYSLEA-NSVIHALC 609 (694)
T ss_dssp T--------TC--CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE-------EEECCBC-SSCEEEEE
T ss_pred C--------CC--cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-------eEEEecC-CCcEEEEE
Confidence 6 22 2456789999999999999998 799999999999999999987 7777664 46799999
Q ss_pred EecCCCccccc
Q psy4577 355 IERLTKKADPV 365 (384)
Q Consensus 355 ~sp~~~~~~~~ 365 (384)
|+|++..+.+.
T Consensus 610 ~sp~~~~l~~~ 620 (694)
T 3dm0_A 610 FSPNRYWLCAA 620 (694)
T ss_dssp ECSSSSEEEEE
T ss_pred EcCCCcEEEEE
Confidence 99998866544
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.2e-28 Score=217.40 Aligned_cols=277 Identities=19% Similarity=0.228 Sum_probs=185.5
Q ss_pred CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577 3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV 82 (384)
Q Consensus 3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~ 82 (384)
+++++. +||+|+.||+|++||+.+ .+.+..+.+|.+.|.+++|+ +. ++++|+.||+|++||+
T Consensus 125 ~~~~g~-~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 125 LQFCGN-RIVSGSDDNTLKVWSAVT--------------GKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNA 186 (445)
T ss_dssp EEEETT-EEEEEETTSCEEEEETTT--------------CCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEET
T ss_pred EEEcCC-EEEEEECCCcEEEEECCC--------------CcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEEC
Confidence 456675 799999999999999986 46778889999999999998 34 7899999999999999
Q ss_pred ccCCCccch----------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceee
Q psy4577 83 VCVEPFDDA----------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYK 142 (384)
Q Consensus 83 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~ 142 (384)
.+++..... ......++.+++|+.........+.+| ...+.+++| ++..++ |+.++
T Consensus 187 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC--SSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred CcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--cccEEEEEE--CCCEEEEEcCCCEEE
Confidence 876321100 011123455666665554443444444 455666666 344444 66677
Q ss_pred eeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcC
Q psy4577 143 IWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 222 (384)
Q Consensus 143 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~ 222 (384)
+||.........+..+.. .+..+.+ ++..+.....|...
T Consensus 263 iwd~~~~~~~~~~~~~~~---------------------------------------~v~~~~~--~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTN---------------------------------------RVYSLQF--DGIHVVSGSLDTSI 301 (445)
T ss_dssp EEEGGGTEEEEEECCCSS---------------------------------------CEEEEEE--CSSEEEEEETTSCE
T ss_pred EEECCCCcEeEEecCCCC---------------------------------------ceEEEEE--CCCEEEEEeCCCeE
Confidence 776655433322222211 1222222 22222333333333
Q ss_pred CCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC---CCCc
Q psy4577 223 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG---HQKE 299 (384)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~~ 299 (384)
..|+. ..........+|...+.++.++ + .++++|+.||.|++||++ .+. ++..+.+ |...
T Consensus 302 ~i~d~----~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~--------~~~--~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 302 RVWDV----ETGNCIHTLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIK--------TGQ--CLQTLQGPNKHQSA 364 (445)
T ss_dssp EEEET----TTCCEEEEECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TCC--EEEEECSTTSCSSC
T ss_pred EEEEC----CCCCEEEEEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECC--------CCc--EEEEEccCCCCCCC
Confidence 33211 1122245566888899988875 4 489999999999999986 333 3455655 8889
Q ss_pred eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-----eccCCcEeEEEEecCCCccccccccc
Q psy4577 300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-----TGHTAVVELELIERLTKKADPVCTLE 369 (384)
Q Consensus 300 i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~~~~~c~~~ 369 (384)
|++++|+ + .+|++|+.||.|++||+++++ .+..+ .+|.+.|++++|+|++..+++.+...
T Consensus 365 v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 365 VTCLQFN--K-NFVITSSDDGTVKLWDLKTGE-------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp EEEEEEC--S-SEEEEEETTSEEEEEETTTCC-------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred EEEEEEC--C-CEEEEEeCCCeEEEEECCCCc-------eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 9999996 4 699999999999999999988 77777 46889999999999988777665443
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.7e-28 Score=217.39 Aligned_cols=249 Identities=16% Similarity=0.232 Sum_probs=165.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+|. +||+|+.||+|+|||+.+ .+.+..+.+|...|.+++|++ . +|++|+.|+.+++|
T Consensus 153 v~fspdg~-~lasgs~Dg~v~iWd~~~--------------~~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 153 VAWIKEGN-YLAVGTSSAEVQLWDVQQ--------------QKRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHH 214 (420)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEECCCeEEEEEcCC--------------CcEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEe
Confidence 57999997 899999999999999987 477888999999999998864 4 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce--
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL-- 154 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~-- 154 (384)
|...... ....+.+| ...+..+.|+|++..++ |+.+++|+.........
T Consensus 215 d~~~~~~-----------------------~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 215 DVRVAEH-----------------------HVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred eecccce-----------------------eeEEeccc--ccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence 9866311 11133344 56788999999999887 89999999865432111
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc---cccCcCCCCCCccCC
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS---NYDTDKGDFGGFGSV 231 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~ 231 (384)
.........+..+.|.|.. ..+++. ..|...+.|..
T Consensus 270 ~~~~~~~~~V~~~~~~p~~-------------------------------------~~~la~~~gs~D~~I~iwd~---- 308 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQ-------------------------------------SNVLATGGGTSDRHIRIWNV---- 308 (420)
T ss_dssp EEECCCSSCEEEEEECTTC-------------------------------------TTEEEEEECTTTCEEEEEET----
T ss_pred eeecccCCceeeeeeCCCc-------------------------------------ccEEEEEeecCCCEEEEEeC----
Confidence 0111111112233333322 211111 12222222211
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
.... ......+...+.++.|+|++. .++++ +.|+.|+|||++ ++ .++..+.+|.+.|++++|+|+|
T Consensus 309 ~t~~-~~~~~~~~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~--------~~--~~v~~l~gH~~~V~~l~~spdg 376 (420)
T 4gga_A 309 CSGA-CLSAVDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYP--------TM--AKVAELKGHTSRVLSLTMSPDG 376 (420)
T ss_dssp TTTE-EEEEEECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS
T ss_pred Cccc-cceeeccccceeeeeecCCCC-eEEEEEecCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC
Confidence 1111 223334567899999999996 55544 379999999986 33 3577899999999999999999
Q ss_pred CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEE
Q psy4577 310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELE 353 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~ 353 (384)
.+|+|||.|++|+|||+.... +......+...+...
T Consensus 377 -~~l~S~s~D~tvriWdv~~~~-------~~~~~~~~~~~~~~~ 412 (420)
T 4gga_A 377 -ATVASAAADETLRLWRCFELD-------PARRREREKASAAKS 412 (420)
T ss_dssp -SCEEEEETTTEEEEECCSCSS-------CC-------------
T ss_pred -CEEEEEecCCeEEEEECCCCC-------ccchhhhccCCcccc
Confidence 799999999999999998765 555554454444333
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=6.9e-29 Score=215.12 Aligned_cols=256 Identities=14% Similarity=0.155 Sum_probs=169.2
Q ss_pred CCCCCCC--CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE------ccCCCcEEEEEe
Q psy4577 1 VQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW------NPNEPWVICSVS 72 (384)
Q Consensus 1 v~fsp~~--~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~------~~~~~~~l~s~s 72 (384)
++|+|++ ..+||+|+.|+.|++||+.... ..+..+.+|.+.|.+++| +|++. +|++++
T Consensus 71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~ 136 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPE-------------MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGS 136 (357)
T ss_dssp EECTTCCTTTCCEEEEETTSCEEEECTTSCS-------------SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEE
T ss_pred EEEcCCCCCCceEEEecCCCeEEEEeCCCCC-------------ccEEEEEecccceEEEeeccccccCCCcc-EEEEEe
Confidence 4789983 2489999999999999998621 256677899999999955 67888 788999
Q ss_pred cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE----EecCceeee----cceeeee
Q psy4577 73 EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ----WLPDVTRVI----NEEYKIW 144 (384)
Q Consensus 73 ~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~----d~~v~~w 144 (384)
.|++|++||+..++. .+..+..... + ....+.+++ |+|++..++ ++.+++|
T Consensus 137 ~d~~i~vwd~~~~~~------------~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDD------------PVANMEPVQG--------E-NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp TTSCEEEECTTSCSS------------CSEEECCCTT--------S-CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred CCCeEEEEeCCCCCC------------cceeccccCC--------C-CCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 999999999987521 0111111110 0 023567777 778898887 7999999
Q ss_pred ccccccccceeecccccccceeeeecc---CCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577 145 KKNTPFLYDLVMTHALEWPSLTAQWLP---DVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD 221 (384)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 221 (384)
|+........ .....++.++.|.| +.. .+..+.. ...+.++.+.-
T Consensus 196 d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~----------~l~~~~~----dg~i~i~d~~~--------------- 243 (357)
T 3i2n_A 196 DLRNMALRWE---TNIKNGVCSLEFDRKDISMN----------KLVATSL----EGKFHVFDMRT--------------- 243 (357)
T ss_dssp ETTTTEEEEE---EECSSCEEEEEESCSSSSCC----------EEEEEES----TTEEEEEEEEE---------------
T ss_pred ECccCceeee---cCCCCceEEEEcCCCCCCCC----------EEEEECC----CCeEEEEeCcC---------------
Confidence 9987654222 11222344555554 221 1222211 22333333320
Q ss_pred CCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC---------CCCCccceee
Q psy4577 222 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD---------PNGECHPDLR 292 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~ 292 (384)
......+......+|...|++++|+|+++.+|++++.||.|++||++....... ..+....+..
T Consensus 244 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 244 -------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp -------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred -------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 000112223344589999999999999855899999999999999974321100 0012245678
Q ss_pred ecCCCCceEEEEeCCCCCCeEE-EeeCCCcEEEEecCCCC
Q psy4577 293 LRGHQKEGYGLSWNPSLNGYLL-SASDDHTICLWDINATP 331 (384)
Q Consensus 293 ~~~h~~~i~~~~~s~~~~~~l~-s~s~Dg~i~iwd~~~~~ 331 (384)
+.+|..+|++++|+|++ .+|+ |++.||.|++||+.+.+
T Consensus 317 ~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC--
T ss_pred cccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCcc
Confidence 89999999999999999 6777 89999999999998764
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=1.1e-27 Score=215.15 Aligned_cols=275 Identities=15% Similarity=0.178 Sum_probs=187.0
Q ss_pred CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc
Q psy4577 4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV 83 (384)
Q Consensus 4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~ 83 (384)
.+++. +||+|+.||+|++||+.+ .+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.
T Consensus 129 ~~~~~-~l~sgs~dg~i~vwd~~~--------------~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 129 QFEDN-YVITGADDKMIRVYDSIN--------------KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEETT-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETT
T ss_pred EECCC-EEEEEcCCCcEEEEECCC--------------CcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECC
Confidence 34554 899999999999999986 47788889999999999999987 67899999999999998
Q ss_pred cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec--Cceeee----cceeeeeccccccccceeec
Q psy4577 84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP--DVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
+++ .+. .+.+| ...|.+++|++ ++..++ |+++++|++...........
T Consensus 192 ~~~-------------~~~-----------~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 192 KGC-------------CTH-----------VFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp TTE-------------EEE-----------EECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCc-------------EEE-----------EECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence 751 111 22334 66788999984 666666 99999999976543221111
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
. ...+ .....+... .+. ...... ....+..+ ++++..+.....|.....|+. ......
T Consensus 246 ~-~~~~--~~~~~~~~~-----~~~--~~~~~~------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~----~~~~~~ 303 (464)
T 3v7d_B 246 E-HDYP--LVFHTPEEN-----PYF--VGVLRG------HMASVRTV--SGHGNIVVSGSYDNTLIVWDV----AQMKCL 303 (464)
T ss_dssp --CCSS--EEESCGGGC-----TTE--EEEECC------CSSCEEEE--EEETTEEEEEETTSCEEEEET----TTTEEE
T ss_pred c-CCcc--eEeeccCCC-----eEE--EEEccC------ccceEEEE--cCCCCEEEEEeCCCeEEEEEC----CCCcEE
Confidence 0 0000 000000000 000 000000 00111222 223334444444554444422 222335
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
....+|...|.+++|+|++. ++++|+.||.|++||++ .+ .++..+.+|...|.+++|+ + .+|++|+
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~~--~-~~l~s~s 369 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLE--------NG--ELMYTLQGHTALVGLLRLS--D-KFLVSAA 369 (464)
T ss_dssp EEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETT--------TT--EEEEEECCCSSCEEEEEEC--S-SEEEEEE
T ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC--------CC--cEEEEEeCCCCcEEEEEEc--C-CEEEEEe
Confidence 56678999999999999995 99999999999999986 33 3567889999999999997 3 5999999
Q ss_pred CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
.||+|++||+++.. ....+ .|...+..++|+|++..+++.
T Consensus 370 ~dg~v~vwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 370 ADGSIRGWDANDYS-------RKFSY-HHTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp TTSEEEEEETTTCC-------EEEEE-ECTTCCCEEEEEECSSEEEEE
T ss_pred CCCcEEEEECCCCc-------eeeee-cCCCCccEEEEEeCCCEEEEe
Confidence 99999999999876 44444 367788889999999876654
No 85
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.3e-27 Score=206.69 Aligned_cols=284 Identities=11% Similarity=0.086 Sum_probs=176.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.|+ ++|||+.. .+..... +...+..++|.+++..++++++.|++|++|
T Consensus 25 v~fs~dg~-~la~g~~~~-~~iw~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 25 YEFNQDQS-CLILSTLKS-FEIYNVHP--------------VAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp EEECTTSS-EEEEECSSE-EEEEEETT--------------EEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred EEECCCCC-EEEEEcCCE-EEEEecCC--------------cceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 57999997 799988765 78999875 2333322 223588899999988565778889999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-cceeeeeccccc-cccceeecc
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-NEEYKIWKKNTP-FLYDLVMTH 158 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-d~~v~~w~~~~~-~~~~~~~~~ 158 (384)
|+.+++. +..+ ....+|.+++|+++...++ ++.+++|++... .....+..
T Consensus 87 d~~~~~~-------------~~~~--------------~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 87 DDVKKQD-------------VSRI--------------KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp ETTTTEE-------------EEEE--------------ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-
T ss_pred ECCCCcE-------------EEEE--------------ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-
Confidence 9977511 1111 1245788999999876555 999999999775 33222222
Q ss_pred cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee-E
Q psy4577 159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE-I 237 (384)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~ 237 (384)
+...+.+.+ ..+.+.+ +.....+.++.+.-. .... ..+.... .....+ .
T Consensus 139 ----~~~~~~~s~------------~~la~~s--g~~~g~v~iwd~~~~---~~~~--~~~~~~~-------~~~~~p~~ 188 (355)
T 3vu4_A 139 ----FGGVCEFSN------------GLLVYSN--EFNLGQIHITKLQSS---GSAT--TQDQGVQ-------QKAILGKG 188 (355)
T ss_dssp ----EEEEEEEET------------TEEEEEE--SSCTTCEEEEECCC------------------------------CC
T ss_pred ----CCceEEEEc------------cEEEEeC--CCcCcEEEEEECCCC---Cccc--ccccccc-------ccccCccc
Confidence 111111111 0111110 011223333333200 0000 0000000 000011 4
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCCCccceeeec-C-CCCceEEEEeCCCCCCeEE
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSD-VLVFDYTKHPSKPDPNGECHPDLRLR-G-HQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~i~~~~~s~~~~~~l~ 314 (384)
..+.+|.+.|++++|+|++. +||+|+.|++ |++||++ ++. .+..+. + |...|++++|+|++ .+|+
T Consensus 189 ~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~--------~~~--~~~~~~~g~h~~~v~~~~~s~~~-~~l~ 256 (355)
T 3vu4_A 189 VLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTE--------DGV--LVREFRRGLDRADVVDMKWSTDG-SKLA 256 (355)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETT--------TCC--EEEEEECTTCCSCEEEEEECTTS-CEEE
T ss_pred EEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECC--------CCc--EEEEEEcCCCCCcEEEEEECCCC-CEEE
Confidence 55678999999999999995 9999999998 9999986 333 455676 5 99999999999998 7999
Q ss_pred EeeCCCcEEEEecCCCCCCCcc-ccc------------eee--e-eccCCcEeEEEEecCCCcccccccccccc
Q psy4577 315 SASDDHTICLWDINATPKENRV-IDA------------KTI--F-TGHTAVVELELIERLTKKADPVCTLEKAK 372 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~~~~~~-~~~------------~~~--~-~~h~~~v~~~~~sp~~~~~~~~c~~~~~~ 372 (384)
+++.|++|++||++........ +.. +.. + ..+......++|+|+++.++..|.....+
T Consensus 257 s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 257 VVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp EEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred EEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 9999999999999875421110 000 000 1 11223347799999999888887654433
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.5e-29 Score=213.09 Aligned_cols=194 Identities=17% Similarity=0.242 Sum_probs=144.0
Q ss_pred EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577 46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL 125 (384)
Q Consensus 46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 125 (384)
..+.+|.+.|++++|+|+|+ +||+|+.|++|++||+.+++ ..+...+.+| ..+|.
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~----------------------~~~~~~l~gH--~~~V~ 61 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGG----------------------QILIADLRGH--EGPVW 61 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTE----------------------EEEEEEEECC--SSCEE
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCC----------------------cEEEEEEcCC--CccEE
Confidence 34579999999999999999 88999999999999997631 0011234456 67899
Q ss_pred EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577 126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL 199 (384)
Q Consensus 126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (384)
+++|+|+ +..++ |++|++||.......
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~----------------------------------------------- 94 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWE----------------------------------------------- 94 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-----------------------------------------------
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-----------------------------------------------
Confidence 9999864 66666 899999987532110
Q ss_pred EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577 200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH 277 (384)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~ 277 (384)
......+|...|++++|+|+ + .+|++|+.|+.|++||++..
T Consensus 95 ------------------------------------~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 95 ------------------------------------KSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp ------------------------------------EEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSS
T ss_pred ------------------------------------EEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCC
Confidence 01223468889999999998 5 58999999999999999621
Q ss_pred CCCCCCCCCccceeeecCCCCceEEEEeCCCC----------------CCeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577 278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL----------------NGYLLSASDDHTICLWDINATPKENRVIDAKT 341 (384)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~----------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 341 (384)
........+.+|...|.+++|+|++ ..+|++|+.|++|++||++... ...++.
T Consensus 138 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~ 206 (316)
T 3bg1_A 138 -------GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG----QWKEEQ 206 (316)
T ss_dssp -------SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS----CEEEEE
T ss_pred -------CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC----ccceee
Confidence 1222234667899999999999972 1589999999999999997542 111667
Q ss_pred eeeccCCcEeEEEEecCC
Q psy4577 342 IFTGHTAVVELELIERLT 359 (384)
Q Consensus 342 ~~~~h~~~v~~~~~sp~~ 359 (384)
++.+|...|++++|+|++
T Consensus 207 ~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 207 KLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CCBCCSSCEEEEECCCCS
T ss_pred ecccCCCceEEEEecCCC
Confidence 788999999999999997
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=236.01 Aligned_cols=220 Identities=8% Similarity=0.116 Sum_probs=162.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|++. +||+|+.||+|+||+... .+....+ .|...|.+|+|+| ++ +|++++.|++|++|
T Consensus 23 lafspdg~-~lAsgs~Dg~I~lw~~~~--------------~~~~~~~-~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 23 AAFDFTQN-LLAIATVTGEVHIYGQQQ--------------VEVVIKL-EDRSAIKEMRFVK-GI-YLVVINAKDTVYVL 84 (902)
T ss_dssp EEEETTTT-EEEEEETTSEEEEECSTT--------------CEEEEEC-SSCCCEEEEEEET-TT-EEEEEETTCEEEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEeCCC--------------cEEEEEc-CCCCCEEEEEEcC-CC-EEEEEECcCeEEEE
Confidence 57999997 899999999999999875 2444433 4788999999999 77 78999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
|+.+++. +.. + .....|.+++|+|++..++ |++|++||+.+..+... .
T Consensus 85 d~~~~~~-------------~~~-----------~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~ 136 (902)
T 2oaj_A 85 SLYSQKV-------------LTT-----------V---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-K 136 (902)
T ss_dssp ETTTCSE-------------EEE-----------E---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-E
T ss_pred ECCCCcE-------------EEE-----------E---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-e
Confidence 9987521 111 1 1245789999999999887 99999999865433100 0
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.. .+ +..
T Consensus 137 i~--------------------------------------------~~-------------~~~---------------- 143 (902)
T 2oaj_A 137 LD--------------------------------------------NL-------------QKS---------------- 143 (902)
T ss_dssp EC--------------------------------------------CH-------------HHH----------------
T ss_pred ec--------------------------------------------cc-------------ccc----------------
Confidence 00 00 000
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------------------CCC
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------------------HQK 298 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~ 298 (384)
.....+|.+.|++++|+|++..++++|+.||.| +||++ .+. ++..+.+ |..
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~--------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV--------ENE--IKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT--------TTE--EEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC--------CCc--eEEEEecccCCcCCCcccccccccccCC
Confidence 000126888999999999755689999999999 99996 322 2334443 357
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceee--e---ec-------------cCCcEeEEEEecC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--F---TG-------------HTAVVELELIERL 358 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~---~~-------------h~~~v~~~~~sp~ 358 (384)
.|++++|+|+| .+|+||+.||+|++||+++++ ++.. + .+ |..+|++++|+|.
T Consensus 213 ~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~-------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 213 KVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH-------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp CEEEEEECTTS-SEEEEEETTCCEEEEETTTCC-------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred CeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence 89999999998 799999999999999999876 5432 2 12 3558999999754
No 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=7.6e-28 Score=223.81 Aligned_cols=229 Identities=12% Similarity=0.142 Sum_probs=176.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc-eEEEEEcc--CCCcEEEEEecCCeE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-ISDFSWNP--NEPWVICSVSEDNIM 77 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-V~~l~~~~--~~~~~l~s~s~D~~i 77 (384)
++|+|+++ +||+++ |+.|+|||+.+.. .+.+....+.+|.+. |++++|+| +++ +|++++.||+|
T Consensus 24 ~~~spdg~-~l~~~~-~~~v~v~~~~~~~----------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v 90 (615)
T 1pgu_A 24 LSYDPTTN-AIAYPC-GKSAFVRCLDDGD----------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKV 90 (615)
T ss_dssp CEEETTTT-EEEEEE-TTEEEEEECCSSC----------CSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEE
T ss_pred EEECCCCC-EEEEec-CCeEEEEECCCCC----------CccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEE
Confidence 57999997 788887 8899999998621 111567778999999 99999999 999 88999999999
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeeccccc
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTP 149 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~ 149 (384)
++||+.+++.... . ...+...+..| ..+|.+++|+|+++.++ + +.+++|+...
T Consensus 91 ~vw~~~~~~~~~~------~----------~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~- 151 (615)
T 1pgu_A 91 IVWGWTFDKESNS------V----------EVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN- 151 (615)
T ss_dssp EEEEEEEEGGGTE------E----------EEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-
T ss_pred EEEeCCCCccccc------c----------cccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC-
Confidence 9999965310000 0 00011122233 56799999999998876 2 3455544110
Q ss_pred cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCcc
Q psy4577 150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG 229 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 229 (384)
T Consensus 152 -------------------------------------------------------------------------------- 151 (615)
T 1pgu_A 152 -------------------------------------------------------------------------------- 151 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeC
Q psy4577 230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWN 306 (384)
Q Consensus 230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s 306 (384)
.......|...|.+++|+|+++.++++++.|+.|++||++ . .+.+..+.+|.. .|.+++|+
T Consensus 152 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~--------~--~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 152 ------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP--------P--FKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp ------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT--------T--BEEEEEECSSSCTTCCEEEEEEC
T ss_pred ------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC--------C--cceeeeecccCCCCceEEEEEEC
Confidence 0223346888999999999996689999999999999975 2 235668889999 99999999
Q ss_pred CC-CCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-e---ccCCcEeEEEEecCCCcccccc
Q psy4577 307 PS-LNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-T---GHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 307 ~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~sp~~~~~~~~c 366 (384)
|+ + .+|++++.||.|++||+++++ .+..+ . +|...|++++|+ ++..+++.+
T Consensus 216 ~~~~-~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 216 PDSG-EFVITVGSDRKISCFDGKSGE-------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp STTC-CEEEEEETTCCEEEEETTTCC-------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred CCCC-CEEEEEeCCCeEEEEECCCCC-------EeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence 99 8 799999999999999999988 88888 6 899999999999 887766654
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=212.11 Aligned_cols=223 Identities=11% Similarity=0.024 Sum_probs=160.5
Q ss_pred CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577 3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV 82 (384)
Q Consensus 3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~ 82 (384)
+.+++. +||+|+.||+|++||+.+. +.+..+. ...|.++.|+|+ +++++.|++|++|+.
T Consensus 44 ~~~d~~-~l~sg~~Dg~v~iwd~~~~--------------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 44 MYYDKW-VCMCRCEDGALHFTQLKDS--------------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYP 102 (343)
T ss_dssp SSEEEE-EEEEEEETTEEEEEEESSS--------------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEET
T ss_pred hcCCCC-EEEEECCCCcEEEEECCCC--------------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEc
Confidence 344554 7999999999999999862 3333333 457889999998 679999999999998
Q ss_pred ccCCCccchhheeeeeeeEEEeccCCccccc-ceeeeeeccCeeEEEEec--Cceeee----cceeeeecccccccccee
Q psy4577 83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYD-LVMTHALEWPSLTAQWLP--DVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
... +.+|+.....+.. ...+| ..+|.+++|+| ++..++ |+++++||+........
T Consensus 103 ~~~---------------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~- 164 (343)
T 3lrv_A 103 GNQ---------------ITILDSKTNKVLREIEVDS--ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV- 164 (343)
T ss_dssp TTE---------------EEEEETTTCCEEEEEECCC--SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-
T ss_pred cCc---------------eEEeecCCcceeEEeecCC--CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-
Confidence 652 3445544433211 11123 46799999999 898887 89999998864332100
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
T Consensus 165 -------------------------------------------------------------------------------- 164 (343)
T 3lrv_A 165 -------------------------------------------------------------------------------- 164 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~ 314 (384)
....|...|++++|+|++. +|++|+.||.|++||++ .+.. ....+.+ |..+|++++|+|++ .+|+
T Consensus 165 ---~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~--------~~~~-~~~~~~~~h~~~v~~l~fs~~g-~~l~ 230 (343)
T 3lrv_A 165 ---HSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLS--------SPDQ-ASSRFPVDEEAKIKEVKFADNG-YWMV 230 (343)
T ss_dssp ---ECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESS--------CTTS-CCEECCCCTTSCEEEEEECTTS-SEEE
T ss_pred ---EecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECC--------CCCC-CccEEeccCCCCEEEEEEeCCC-CEEE
Confidence 0012445689999999995 99999999999999997 3332 2146677 99999999999998 7999
Q ss_pred EeeCCCcEEEEecCCCCCCCccccceeeee---ccCCcEe--EEEEecCCCcccccc
Q psy4577 315 SASDDHTICLWDINATPKENRVIDAKTIFT---GHTAVVE--LELIERLTKKADPVC 366 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~--~~~~sp~~~~~~~~c 366 (384)
+++ |++|++||+++.+ .+..+. .|...+. +++|+|+++.+++..
T Consensus 231 s~~-~~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDV-------GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp EEE-SSBEEEEETTSST-------TCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred EEe-CCeEEEEEcCCCC-------cceeecccccccccccceEEEECCCCCEEEEec
Confidence 999 5599999999886 444433 3445554 699999999877743
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.1e-28 Score=215.67 Aligned_cols=213 Identities=13% Similarity=0.131 Sum_probs=147.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. +||+|+.|++|+|||+.+.. .......+.+|...|++++|+|++. +|++++.|++|++|
T Consensus 61 ~~~s~~~~-~l~s~s~d~~v~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 61 VDWAPKSN-RIVTCSQDRNAYVYEKRPDG-----------TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVC 127 (377)
T ss_dssp EEECTTTC-CEEEEETTSSEEEC-----------------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEEC
T ss_pred EEEeCCCC-EEEEEeCCCeEEEEEcCCCC-----------ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEE
Confidence 47999997 79999999999999998621 1234566788999999999999999 77899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceee-eeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+..++.. . +...+.+ | ...|.+++|+|+++.++ |+.+++||+.........
T Consensus 128 d~~~~~~~----------------~-----~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 128 YFEQENDW----------------W-----VSKHLKRPL--RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CC-----C----------------C-----CCEEECSSC--CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred EECCcccc----------------e-----eeeEeeccc--CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 99774210 0 0112222 3 67899999999998887 899999998543321100
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
... .+.... ....
T Consensus 185 ~~~----------------------------------------------------------~~~~~~---------~~~~ 197 (377)
T 3dwl_C 185 EAS----------------------------------------------------------VWGSRL---------PFNT 197 (377)
T ss_dssp CSC----------------------------------------------------------SSCSCC---------CEEE
T ss_pred ccc----------------------------------------------------------cccccc---------chhh
Confidence 000 000000 0000
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc--cceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC--HPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
..... .|.+.|.+++|+|+++ +|++++.||.|++||++ .+.. ..+..+.+|..+|.+++|+|++ .+|
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~--------~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 266 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPS--------APEQPPRALITVKLSQLPLRSLLWANES-AIV 266 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEEC--------STTSCEEECCCEECSSSCEEEEEEEETT-EEE
T ss_pred hhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECC--------CCCCcceeeEeecCCCCceEEEEEcCCC-CEE
Confidence 12222 7899999999999995 99999999999999997 3332 1256788999999999999998 799
Q ss_pred EEeeCCCcEEEEecC
Q psy4577 314 LSASDDHTICLWDIN 328 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~ 328 (384)
++|+.|+.+ +|+..
T Consensus 267 ~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 267 AAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEESSSSEE-EECCC
T ss_pred EEEcCCcEE-EEEeC
Confidence 998876666 66654
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-29 Score=220.79 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=175.6
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEcc-CCCcEEEEEecCCeEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNP-NEPWVICSVSEDNIMQI 79 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~v 79 (384)
.|+|++. .+++++ .|+... +++..+ .+|.+.|++++|+| ++. +|++|+.|++|++
T Consensus 34 ~f~~~~~-~~~~~~------~w~~~g---------------~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~v 90 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGNLRG---------------KLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKI 90 (437)
T ss_dssp GGCCCCC-CCCCCC------GGGCCC---------------CEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEE
T ss_pred hcCCccc-cccccc------cccccc---------------eEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEE
Confidence 4788887 566665 387553 667777 89999999999999 888 8899999999999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccc---ccccc
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKN---TPFLY 152 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~---~~~~~ 152 (384)
||+...+ ...........+| ...|.+++|+|++..++ |+++++|++. .....
T Consensus 91 wd~~~~~-------------------~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 91 WNLKEII-------------------VGEVYSSSLTYDC--SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp EEHHHHH-------------------TTCCCSCSEEEEC--SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred eECcccc-------------------cCcccceeeeccC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 9997620 0000000011123 67899999999998887 8999999985 32222
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
.....+ +...+.+.+... ..........+.+++..+.....|.....|+. .
T Consensus 150 ~~~~~~----~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~ 200 (437)
T 3gre_A 150 KFLNCE----CIRKINLKNFGK---------------------NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI----R 200 (437)
T ss_dssp EEEEEE----EEEEEEGGGGSS---------------------CCCEEEEEEEECSSCEEEEEEETTSEEEEEET----T
T ss_pred eccccc----eeEEEEccCccc---------------------ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC----C
Confidence 222211 112222222110 00011111112233334444444444444322 1
Q ss_pred CceeEEEEee--cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CCCCceEEEEeC---
Q psy4577 233 GKIEIEIKIN--HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GHQKEGYGLSWN--- 306 (384)
Q Consensus 233 ~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s--- 306 (384)
.......+.. |.+.|++++|+|++. +|++|+.||.|++||++ .+ .++..+. +|..+|++++|+
T Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 201 TLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIR--------FN--VLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp TCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETT--------TT--EEEEEEBCTTCEEEEEEEECTTT
T ss_pred CCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcC--------Cc--cEEEEEecCCCCceEEEEecccc
Confidence 1222444445 899999999999985 99999999999999996 33 3445554 778899999555
Q ss_pred -CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--------------------------cCCcEeEEEEecCC
Q psy4577 307 -PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--------------------------HTAVVELELIERLT 359 (384)
Q Consensus 307 -~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------------------h~~~v~~~~~sp~~ 359 (384)
|++ .+|++|+.||+|++||+++++ ++..+.+ |...|++++|+ ++
T Consensus 270 s~~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 270 GKNS-VIVVGGSSKTFLTIWNFVKGH-------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp CTTE-EEEEEESTTEEEEEEETTTTE-------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred CCCc-cEEEEEcCCCcEEEEEcCCCc-------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 466 699999999999999999886 5555543 55567777777 55
Q ss_pred Cccccc
Q psy4577 360 KKADPV 365 (384)
Q Consensus 360 ~~~~~~ 365 (384)
+.+++.
T Consensus 341 ~~l~s~ 346 (437)
T 3gre_A 341 KILLTD 346 (437)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 544444
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=214.19 Aligned_cols=230 Identities=11% Similarity=-0.001 Sum_probs=153.4
Q ss_pred cccccceEEEEEccCCCcEEEEEecCCeEEEEEcc--cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeE
Q psy4577 49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV--CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT 126 (384)
Q Consensus 49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 126 (384)
.+|.+.|++++|+|+++.++++++.|++|++||+. .++. ...+..|.....+.+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~------------------------~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV------------------------LKLRKRFCFSKRPNA 154 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC------------------------EEEEEEEECSSCEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce------------------------eeeeecccCCCCceE
Confidence 35777899999999999556899999999999997 4311 122333444678999
Q ss_pred EEEecCceeee----cceeeeeccccccccc----eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 127 AQWLPDVTRVI----NEEYKIWKKNTPFLYD----LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 127 ~~~~~~~~~~~----d~~v~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
++|+|++..++ ++.+++|++....... .+..+. .++.++.|.|+..
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~------------------------ 208 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSD------------------------ 208 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTT------------------------
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCC------------------------
Confidence 99999998887 7889999886654332 222221 1233344443300
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP 278 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 278 (384)
.+..++....|.....|.. ..+........+|...|.+++|+ ++. +|++++.|+.|++||++
T Consensus 209 ----------~~~~l~s~~~d~~i~vwd~---~~~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~--- 270 (450)
T 2vdu_B 209 ----------GHQFIITSDRDEHIKISHY---PQCFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWK--- 270 (450)
T ss_dssp ----------SCEEEEEEETTSCEEEEEE---SCTTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETT---
T ss_pred ----------CCcEEEEEcCCCcEEEEEC---CCCceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECC---
Confidence 0222222233333332211 01222222245799999999999 885 99999999999999996
Q ss_pred CCCCCCCCccceeeec-------------------------CCCCceEEEEeCCCCCCeEEEee-CCCcEEEEec--CCC
Q psy4577 279 SKPDPNGECHPDLRLR-------------------------GHQKEGYGLSWNPSLNGYLLSAS-DDHTICLWDI--NAT 330 (384)
Q Consensus 279 ~~~~~~~~~~~~~~~~-------------------------~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i~iwd~--~~~ 330 (384)
.+.. +..+. .+...|.+++|+|++ .+|++++ .|+.|++|++ ..+
T Consensus 271 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 271 -----TGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp -----TCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSST
T ss_pred -----CCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCC
Confidence 3332 22332 233578999999998 6888888 8999999999 443
Q ss_pred CCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577 331 PKENRVIDAKTIFTGHTAVVELELIERLT 359 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 359 (384)
. .+..+..+.+| ..|.+++|+|++
T Consensus 343 ~----~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 343 G----DLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp T----CEEEEEEEECS-SCEEEEEEETTE
T ss_pred C----ceeeccEeccC-CceEEEEecCCc
Confidence 1 12267778888 889999999954
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-28 Score=212.68 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=162.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-----ceEEEEEccCCCcEEEEEecCC
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-----KISDFSWNPNEPWVICSVSEDN 75 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-----~V~~l~~~~~~~~~l~s~s~D~ 75 (384)
|+|||+|. +||+++.||.|+|||.+ .++..+. |.. .|.+++|||+|+ +||+|+.||
T Consensus 91 vawSPdG~-~LAs~s~dg~V~iwd~~----------------~~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DG 151 (588)
T 2j04_A 91 CKPSPIDD-WMAVLSNNGNVSVFKDN----------------KMLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDG 151 (588)
T ss_dssp EEECSSSS-CEEEEETTSCEEEEETT----------------EEEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTS
T ss_pred EEECCCCC-EEEEEeCCCcEEEEeCC----------------ceeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCC
Confidence 58999998 79999999999999964 3555556 665 499999999999 889999999
Q ss_pred eEEEEEcccCCCccchhheeeeeeeEEEeccCCc--ccccce----eeeeeccCeeEEEEecCceeee---cceeeeecc
Q psy4577 76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTP--FLYDLV----MTHALEWPSLTAQWLPDVTRVI---NEEYKIWKK 146 (384)
Q Consensus 76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~ 146 (384)
+|++||+.++... .+ .....+ .+| ...|.+++|+|+| .++ |+++++|+.
T Consensus 152 tVkIWd~~~~~l~-------------------~~~~i~l~ti~~~~~gh--~~~V~sVawSPdg-Laass~D~tVrlWd~ 209 (588)
T 2j04_A 152 ELQFFSIRKNSEN-------------------TPEFYFESSIRLSDAGS--KDWVTHIVWYEDV-LVAALSNNSVFSMTV 209 (588)
T ss_dssp EEEEEECCCCTTT-------------------CCCCEEEEEEECSCTTC--CCCEEEEEEETTE-EEEEETTCCEEEECC
T ss_pred EEEEEECCCCccc-------------------cccceeeeeeecccccc--cccEEEEEEcCCc-EEEEeCCCeEEEEEC
Confidence 9999999874110 00 011122 234 5689999999999 444 999999987
Q ss_pred ccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577 147 NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFG 226 (384)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 226 (384)
.+.....
T Consensus 210 ~~~~~~~------------------------------------------------------------------------- 216 (588)
T 2j04_A 210 SASSHQP------------------------------------------------------------------------- 216 (588)
T ss_dssp CSSSSCC-------------------------------------------------------------------------
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 5433200
Q ss_pred CccCCCCceeEEEE-eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe
Q psy4577 227 GFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW 305 (384)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 305 (384)
....+ .+|...|.+++|+ + ..+|+++ ++.|++||+. +..... ...+|...|.+++|
T Consensus 217 ---------~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~---------~~~~~~-~~~gh~~~V~~va~ 273 (588)
T 2j04_A 217 ---------VSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLK---------NYSISS-LKTGSLENFHIIPL 273 (588)
T ss_dssp ---------CEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETT---------TTEEEE-EECSCCSCCCEEEE
T ss_pred ---------ceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECC---------CCeEEE-EEcCCCceEEEEEe
Confidence 01111 2577889999999 5 4888887 6999999985 222112 22389999999999
Q ss_pred --CCCCCCeEEEeeCCCcEEEEecCCCCC--CCc--------------cccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 306 --NPSLNGYLLSASDDHTICLWDINATPK--ENR--------------VIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 306 --s~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~--------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
+|++ ..|++++.||+ ++|....-.. .+. .-..+..+.+ ...|++++|||+|+.++..-.
T Consensus 274 ~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 274 NHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred eeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 9998 79999999999 9998742100 000 0002333333 556999999999998877654
Q ss_pred c
Q psy4577 368 L 368 (384)
Q Consensus 368 ~ 368 (384)
.
T Consensus 351 i 351 (588)
T 2j04_A 351 M 351 (588)
T ss_dssp E
T ss_pred c
Confidence 4
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.4e-28 Score=218.84 Aligned_cols=202 Identities=12% Similarity=0.128 Sum_probs=152.4
Q ss_pred eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577 44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 123 (384)
Q Consensus 44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (384)
+.....+|...|+||+|+|....+||+|+.||+|+|||+..++.. ....+.+| ...
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------~~~~~~gH--~~~ 166 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------TFIKGIGA--GGS 166 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------------------EEECCCSS--SCC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------------------eEEEccCC--CCC
Confidence 344556889999999999976668999999999999999764110 00122345 678
Q ss_pred eeEEEEec-Cceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 124 SLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 124 v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
|.+++|+| ++..++ |++|++||+.+.......
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------------------------------------- 203 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA------------------------------------------- 203 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-------------------------------------------
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-------------------------------------------
Confidence 99999998 566666 899999987542211000
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP 278 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 278 (384)
....+...+.+++|+|++. +|++|+.||.|++||++
T Consensus 204 ----------------------------------------~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~--- 239 (435)
T 4e54_B 204 ----------------------------------------SSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD--- 239 (435)
T ss_dssp ----------------------------------------CCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS---
T ss_pred ----------------------------------------ccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC---
Confidence 0001234567899999995 99999999999999985
Q ss_pred CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577 279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL 358 (384)
Q Consensus 279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 358 (384)
+. .+..+.+|...|++++|+|+++.+|++|+.|++|+|||+++.+.. ..+....+|...|++++|+|+
T Consensus 240 ------~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~spd 307 (435)
T 4e54_B 240 ------GK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASFLYSLPHRHPVNAACFSPD 307 (435)
T ss_dssp ------SC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCCSBCCBCSSCEEECCBCTT
T ss_pred ------cc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceEEEeeeccccccceeECCC
Confidence 22 345788999999999999998668999999999999999987521 123334679999999999999
Q ss_pred CCcccccccc
Q psy4577 359 TKKADPVCTL 368 (384)
Q Consensus 359 ~~~~~~~c~~ 368 (384)
+..+++.+..
T Consensus 308 g~~l~s~~~D 317 (435)
T 4e54_B 308 GARLLTTDQK 317 (435)
T ss_dssp SSEEEEEESS
T ss_pred CCeeEEEcCC
Confidence 9988776543
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=2.4e-27 Score=212.96 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=184.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--CCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i~ 78 (384)
++|+|++ +|++|+.||+|++||+.+ .+.+..+.+|.+.|.+++|++ ++. ++++++.|++|+
T Consensus 168 l~~~~~~--~l~s~s~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~ 230 (464)
T 3v7d_B 168 LKYAHGG--ILVSGSTDRTVRVWDIKK--------------GCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLH 230 (464)
T ss_dssp EEECSTT--EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEE
T ss_pred EEEcCCC--EEEEEeCCCCEEEEECCC--------------CcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEE
Confidence 4678876 799999999999999986 467788899999999999985 556 788999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL 154 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~ 154 (384)
+||+................ .........+.+...+.+| ...+.++ ++++..++ |+.+++||+.+......
T Consensus 231 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVLRGH--MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp EEECCCCCCC------CCSS-EEESCGGGCTTEEEEECCC--SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EeeCCCCcccccccccCCcc-eEeeccCCCeEEEEEccCc--cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 99998764332211110000 0000011112222344444 4445554 67777776 99999999977655433
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
+..+.. + +..+.+++++..+.+...|.....|.. ...
T Consensus 306 ~~~~~~--~-------------------------------------v~~~~~~~~~~~l~sg~~dg~i~vwd~----~~~ 342 (464)
T 3v7d_B 306 LSGHTD--R-------------------------------------IYSTIYDHERKRCISASMDTTIRIWDL----ENG 342 (464)
T ss_dssp ECCCSS--C-------------------------------------EEEEEEETTTTEEEEEETTSCEEEEET----TTT
T ss_pred ecCCCC--C-------------------------------------EEEEEEcCCCCEEEEEeCCCcEEEEEC----CCC
Confidence 333221 1 233333333333333344444333321 122
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
.......+|...|.+++|++ .+|++++.||.|++||++ ... ..... .|...+..++|+|++ .+|+
T Consensus 343 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~--------~~~--~~~~~-~~~~~~~~~~~~~~~-~~l~ 407 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN--------DYS--RKFSY-HHTNLSAITTFYVSD-NILV 407 (464)
T ss_dssp EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETT--------TCC--EEEEE-ECTTCCCEEEEEECS-SEEE
T ss_pred cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECC--------CCc--eeeee-cCCCCccEEEEEeCC-CEEE
Confidence 23556678999999999984 489999999999999996 222 22222 366678889999998 7999
Q ss_pred EeeCCCcEEEEecCCCCCCCccccceee-eeccCCcEeEEEEecCCCccccccc
Q psy4577 315 SASDDHTICLWDINATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
+|+ ||.|++||+++++ .+.. +.+|...|++++|+ +..+...+.
T Consensus 408 ~~~-dg~i~iwd~~~g~-------~~~~~~~~~~~~v~~v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 408 SGS-ENQFNIYNLRSGK-------LVHANILKDADQIWSVNFK--GKTLVAAVE 451 (464)
T ss_dssp EEE-TTEEEEEETTTCC-------EEESCTTTTCSEEEEEEEE--TTEEEEEEE
T ss_pred Eec-CCeEEEEECCCCc-------EEehhhccCCCcEEEEEec--CCEEEEEEE
Confidence 988 9999999999998 7775 66799999999997 455554443
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=8.4e-28 Score=207.35 Aligned_cols=227 Identities=17% Similarity=0.243 Sum_probs=153.4
Q ss_pred CCCCC--CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCe
Q psy4577 1 VQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp--~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~ 76 (384)
++|+| ++. +||+|+.|+.|+|||+....... .....+.+..+.+|.+.|.+++|+|+ +. +|++++.|+.
T Consensus 63 ~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~ 135 (351)
T 3f3f_A 63 IDWASPEYGR-IIASASYDKTVKLWEEDPDQEEC-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGI 135 (351)
T ss_dssp EEECCGGGCS-EEEEEETTSCEEEEEECTTSCTT-----SSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCE
T ss_pred EEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccc-----cccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCc
Confidence 46888 465 89999999999999998632110 01112567778899999999999999 88 7889999999
Q ss_pred EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC---ceeee----cceeeeeccccc
Q psy4577 77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD---VTRVI----NEEYKIWKKNTP 149 (384)
Q Consensus 77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~----d~~v~~w~~~~~ 149 (384)
|++||+..++........ ..... + .+........+.+++|+|+ +..++ ++.+.+|+....
T Consensus 136 v~iwd~~~~~~~~~~~~~----~~~~~-------~--~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLT----SEMKV-------L--SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp EEEEECSSTTCTTCCEEE----EEEES-------C--SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred EEEecCCChHHhcccccc----ccccc-------c--ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence 999999876432211100 00000 0 0011112456778888886 44443 333222211100
Q ss_pred cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCcc
Q psy4577 150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG 229 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 229 (384)
T Consensus 203 -------------------------------------------------------------------------------- 202 (351)
T 3f3f_A 203 -------------------------------------------------------------------------------- 202 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeEEEEeecCCceEEEEEcCCCC---cEEEEEeCCCcEEEEecCCCCCCCC------------------------
Q psy4577 230 SVSGKIEIEIKINHEGEVNRARYMPQNP---CVIATKTPSSDVLVFDYTKHPSKPD------------------------ 282 (384)
Q Consensus 230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~------------------------ 282 (384)
.........+|...|++++|+|++. .+|++|+.||.|++||++.......
T Consensus 203 ---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 203 ---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp ---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred ---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence 0011333446889999999999973 4999999999999999974211000
Q ss_pred ------------CCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 283 ------------PNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 283 ------------~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.......+..+.+|...|++++|+|++ .+|++|+.||.|++||+.+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -----------CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred cccccceeeeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence 000124566788999999999999998 799999999999999999876
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=1e-27 Score=209.00 Aligned_cols=246 Identities=13% Similarity=0.114 Sum_probs=170.4
Q ss_pred cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577 49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 128 (384)
Q Consensus 49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 128 (384)
..|.++|++++|+|+++ +|++++.|+.|++||+.+++ . .....+.+| ...|.+++
T Consensus 5 ~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~--------------~--------~~~~~~~~h--~~~v~~~~ 59 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNK--------------W--------VQVHELKEH--NGQVTGVD 59 (372)
T ss_dssp ESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTE--------------E--------EEEEEEECC--SSCEEEEE
T ss_pred cccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCc--------------E--------EeeeeecCC--CCcccEEE
Confidence 45889999999999999 88899999999999997741 0 011123344 66899999
Q ss_pred EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577 129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV 204 (384)
Q Consensus 129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 204 (384)
|+|+++.++ |+.+++|++................++.++.|.++
T Consensus 60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------- 107 (372)
T 1k8k_C 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN-------------------------------- 107 (372)
T ss_dssp EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--------------------------------
T ss_pred EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC--------------------------------
Confidence 999998887 89999999866543222211111222334444433
Q ss_pred ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC-
Q psy4577 205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP- 283 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 283 (384)
+..+.....|.....|.................|...|.+++|+|++. +|++++.||.|++||++........
T Consensus 108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccccc
Confidence 222222222222222211110001112223356889999999999995 9999999999999997532111000
Q ss_pred -------CCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577 284 -------NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE 356 (384)
Q Consensus 284 -------~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 356 (384)
......+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++ ++..+..|..+|++++|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM-------AVATLASETLPLLAVTFI 253 (372)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT-------EEEEEECSSCCEEEEEEE
T ss_pred ccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc-------eeEEEccCCCCeEEEEEe
Confidence 01123456778999999999999998 799999999999999999988 899999999999999999
Q ss_pred cCCCccccc
Q psy4577 357 RLTKKADPV 365 (384)
Q Consensus 357 p~~~~~~~~ 365 (384)
|++..+++.
T Consensus 254 ~~~~~l~~~ 262 (372)
T 1k8k_C 254 TESSLVAAG 262 (372)
T ss_dssp ETTEEEEEE
T ss_pred cCCCEEEEE
Confidence 999866544
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.5e-29 Score=218.58 Aligned_cols=252 Identities=8% Similarity=-0.018 Sum_probs=176.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|||||+ ++||++.|++|+ |... ++ .+.||...|.+++|+|+| .++++.+|
T Consensus 21 v~~SpDG~-~iASas~D~TV~--d~~~--------------~~---~l~gh~~~v~~V~FsPdg--------~~~~~~~~ 72 (588)
T 2j04_A 21 LTWARDGT-LYLTTFPDISIG--QPKY--------------AK---DINCNSKNLFHVKEFPLE--------FENKLDFE 72 (588)
T ss_dssp EEECTTSC-EEEECSSSEEEE--EECC--------------CS---CCSSBGGGTEEEEEECCC--------CCCTTTTS
T ss_pred EEECCCCC-EEEEEcCCceee--cccc--------------cc---eecCCCccEEEEEECCCC--------CcceEEEE
Confidence 57999997 899999999999 7443 12 226999999999999998 45665555
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~ 156 (384)
+.+....+ -.+| ...|.+++|+|+|..++ +|++++|+... +...+.
T Consensus 73 ~~~~~~~~--------------------------~~~~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 73 LAQQNGLL--------------------------NSQP--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp CCCSSCSS--------------------------TTSC--SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred eCCCceEe--------------------------ecCC--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 54332110 0022 56799999999999888 99999999644 111111
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc--
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK-- 234 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-- 234 (384)
+... -....+.++++++++..+.+...|...+.|.........
T Consensus 123 -~~~~----------------------------------~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 123 -SKGN----------------------------------LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp -CSSC----------------------------------STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred -CCCc----------------------------------cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 1100 000125567777777777777777777766543321111
Q ss_pred -eeEEEE----eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeee-cCCCCceEEEEeCC
Q psy4577 235 -IEIEIK----INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRL-RGHQKEGYGLSWNP 307 (384)
Q Consensus 235 -~~~~~~----~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~h~~~i~~~~~s~ 307 (384)
..+... .+|...|.+++|+|+| +++++.|++|++||+. .+... ...++ .+|...|.+++|+
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~--------~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVS--------ASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCC--------SSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred ceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECC--------CCccccceeeecccccCcEEEEEEE-
Confidence 123343 5678899999999988 6778889999999985 22221 23456 4788999999999
Q ss_pred CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE--ecCCCccccccc
Q psy4577 308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI--ERLTKKADPVCT 367 (384)
Q Consensus 308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~~~~c~ 367 (384)
| ++||+++ |++|++||+.+++ ......+|.+.|++++| +|++..++....
T Consensus 236 -g-~~LASa~-~~tIkLWd~~~~~-------~~~~~~gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 236 -D-YKVVLTC-PGYVHKIDLKNYS-------ISSLKTGSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp -T-TEEEEEC-SSEEEEEETTTTE-------EEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred -C-CEEEEEe-CCeEEEEECCCCe-------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence 5 6999987 6999999999875 42333389999999999 999987666653
No 99
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.1e-26 Score=203.33 Aligned_cols=239 Identities=11% Similarity=0.111 Sum_probs=164.6
Q ss_pred CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577 42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE 121 (384)
Q Consensus 42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (384)
..+...+.+|.+.|++++|+|++..+|++|+.|++|++||+.+++.. . .+....+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~-----------~~~~~~h~ 118 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------S-----------FIQGMGPG 118 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------E-----------EECCCSTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------e-----------eeecCCcC
Confidence 46677889999999999999999338999999999999999864211 1 11111126
Q ss_pred cCeeEEEEec-Cceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCC
Q psy4577 122 WPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQ 196 (384)
Q Consensus 122 ~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (384)
..|.+++|+| ++..++ |+.+++||+.+.....+........
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 164 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDY---------------------------------- 164 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSC----------------------------------
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCC----------------------------------
Confidence 7899999999 667766 8999999997643322211111111
Q ss_pred CeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q psy4577 197 NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 276 (384)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~ 276 (384)
.+..+.+++++..+.....|.....|.. .+. .......|...|.+++|+|+++.+|++|+.|+.|++||++.
T Consensus 165 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 165 ---WYCCVDVSVSRQMLATGDSTGRLLLLGL----DGH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp ---CEEEEEEETTTTEEEEEETTSEEEEEET----TSC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred ---CeEEEEECCCCCEEEEECCCCCEEEEEC----CCC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 1333333334333333344444333322 122 35556689999999999999966999999999999999973
Q ss_pred CCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccC--------
Q psy4577 277 HPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-------- 347 (384)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~-------- 347 (384)
.. .....+..+ +|...|.+++|+| ++ .+|++++.|+.|++||+++++ .+..+.+|.
T Consensus 237 ~~------~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 237 IK------DKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWS-------KPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp CC------STTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTT-------SCSEEEECCBCCCTTSC
T ss_pred CC------cccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCc-------ccccccccccccccccc
Confidence 11 011233334 7999999999999 98 799999999999999999887 555555443
Q ss_pred ---------CcEeEEEEecCCCc
Q psy4577 348 ---------AVVELELIERLTKK 361 (384)
Q Consensus 348 ---------~~v~~~~~sp~~~~ 361 (384)
..+..++|+|++..
T Consensus 302 ~~~~~~~p~~~~~~~~~s~dg~~ 324 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYPDDQL 324 (383)
T ss_dssp CCCCEECSSSSEEEEECBCCTTT
T ss_pred ceEEeccCCCCceEEEecCCccc
Confidence 34445677776655
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.4e-27 Score=210.04 Aligned_cols=247 Identities=8% Similarity=-0.031 Sum_probs=164.6
Q ss_pred CCCCCC----C---CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-----ccceEEEEEc----cCC
Q psy4577 1 VQWSPH----N---ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-----TAKISDFSWN----PNE 64 (384)
Q Consensus 1 v~fsp~----~---~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-----~~~V~~l~~~----~~~ 64 (384)
++|+|+ + . +||+++.|+.|++||+.+... ........+.+| ...|.+++|+ |++
T Consensus 68 ~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 68 VDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDE---------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTT---------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred EEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcc---------cccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 357777 6 6 799999999999999986210 111226677788 5899999999 999
Q ss_pred CcE-EEEEecCCeEEEEEccc------CCCccchhheeeeeeeEEEeccCCcccccceee-----eeeccCeeEEEEecC
Q psy4577 65 PWV-ICSVSEDNIMQILSVVC------VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT-----HALEWPSLTAQWLPD 132 (384)
Q Consensus 65 ~~~-l~s~s~D~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 132 (384)
. + |++++.|+.|++||+.. ++.+. |... ..+.+ +.....+.+++|+|+
T Consensus 138 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 138 S-HRLVATDVKGTTYIWKFHPFADESNSLTLN--------------WSPT-----LELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp C-EEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------CCCE-----EEEEEEECCSSSSCCCCCEEEECTT
T ss_pred c-eEEEEEeCCCcEEEEeCCccccccccceee--------------ccCc-----ceeeeeeccccCCCCCceEEEECCC
Confidence 9 6 88999999999999987 32211 0000 01111 223667899999999
Q ss_pred ceeee----cceeeeeccccccccceeec---cc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577 133 VTRVI----NEEYKIWKKNTPFLYDLVMT---HA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV 204 (384)
Q Consensus 133 ~~~~~----d~~v~~w~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 204 (384)
+ .++ ++.+++||+........+.. +. ...+..++.|.|+.
T Consensus 198 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~------------------------------- 245 (397)
T 1sq9_A 198 G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG------------------------------- 245 (397)
T ss_dssp S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-------------------------------
T ss_pred c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC-------------------------------
Confidence 9 666 89999999987654433333 20 02223444554432
Q ss_pred ecCCCCccccccccc---CcCCCCCCccCCCCceeEEEEee-------------cCCceEEEEEcCCCCcEEEEEeCCCc
Q psy4577 205 QLPNEDAQFDASNYD---TDKGDFGGFGSVSGKIEIEIKIN-------------HEGEVNRARYMPQNPCVIATKTPSSD 268 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~~p~~~~~l~s~s~dg~ 268 (384)
..+.+...| .....|.. ........... |...|.+++|+|+++ +|++++.||.
T Consensus 246 ------~~l~~~~~d~~~g~i~i~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~ 314 (397)
T 1sq9_A 246 ------SLLAIAHDSNSFGCITLYET----EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGK 314 (397)
T ss_dssp ------TEEEEEEEETTEEEEEEEET----TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred ------CEEEEEecCCCCceEEEEEC----CCCcccceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCCe
Confidence 222222222 11111111 01111333344 899999999999995 9999999999
Q ss_pred EEEEecCCCCCCCCCCCCccceeeec------CC---------------CCceEEEEeCCCCC---------CeEEEeeC
Q psy4577 269 VLVFDYTKHPSKPDPNGECHPDLRLR------GH---------------QKEGYGLSWNPSLN---------GYLLSASD 318 (384)
Q Consensus 269 i~iwd~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~i~~~~~s~~~~---------~~l~s~s~ 318 (384)
|++||++ .+ +.+..+. +| ..+|++++|+|++. .+|++++.
T Consensus 315 i~iwd~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~ 384 (397)
T 1sq9_A 315 LRFWDVK--------TK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL 384 (397)
T ss_dssp EEEEETT--------TT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred EEEEEcC--------CC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC
Confidence 9999986 33 3455666 77 89999999999972 49999999
Q ss_pred CCcEEEEecCCC
Q psy4577 319 DHTICLWDINAT 330 (384)
Q Consensus 319 Dg~i~iwd~~~~ 330 (384)
||.|++||++++
T Consensus 385 dg~i~iw~~~~g 396 (397)
T 1sq9_A 385 DRSIRWFREAGG 396 (397)
T ss_dssp TTEEEEEEEEC-
T ss_pred CCcEEEEEcCCC
Confidence 999999999876
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.4e-26 Score=197.33 Aligned_cols=238 Identities=18% Similarity=0.281 Sum_probs=161.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
|+|+|+++ +||+|+.|++|+|||+++ .+.+..+.+|...+.++.+. +. ++++++.++.+++|
T Consensus 73 v~~~~~~~-~l~sgs~Dg~v~iw~~~~--------------~~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 73 VAWIKEGN-YLAVGTSSAEVQLWDVQQ--------------QKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHH 134 (318)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred EEECCCCC-EEEEEECCCcEEEeecCC--------------ceeEEEecCccceEEEeecC--CC-EEEEEecCCceEee
Confidence 47999997 899999999999999987 47788889999988877665 44 88999999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee-
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV- 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~- 155 (384)
+...... ....+.+| ...+..+.|.++++.++ |+++++||..........
T Consensus 135 ~~~~~~~-----------------------~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 135 DVRVAEH-----------------------HVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred ecCCCce-----------------------eEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence 9866311 11123334 56788999999998887 899999998765432111
Q ss_pred -ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 156 -MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
.......+...+.+.+... ..+...+. .....+.+ ||.. .
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~--~~~~~i~l----------------wd~~------------~ 230 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQS---------NVLATGGG--TSDRHIRI----------------WNVC------------S 230 (318)
T ss_dssp EEECCCCSCEEEEEECTTST---------TEEEEEEC--TTTCEEEE----------------EETT------------T
T ss_pred eeecccCCceEEEEecCCCC---------cEEEEEec--CCCCEEEE----------------Eecc------------c
Confidence 1111111112222222211 00000000 00111111 1111 1
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEE-EEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIA-TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
........+...+..+.|+|.+..+++ +|+.|+.|+|||++ ++ +++..+.+|.++|++++|+|++ .+|
T Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~--------~~--~~~~~l~gH~~~V~~l~~spdg-~~l 299 (318)
T 4ggc_A 231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--------TM--AKVAELKGHTSRVLSLTMSPDG-ATV 299 (318)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS-SCE
T ss_pred ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC-CEE
Confidence 113344567888999999999864433 23479999999986 33 3567899999999999999999 799
Q ss_pred EEeeCCCcEEEEecCCCC
Q psy4577 314 LSASDDHTICLWDINATP 331 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~ 331 (384)
||||.||+|+|||+....
T Consensus 300 ~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 300 ASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTEEEEECCSCCC
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999997654
No 102
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=5.6e-28 Score=210.05 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=169.0
Q ss_pred CCCCCC---CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec--ccccceEEEEEccC----CCcEEEEE
Q psy4577 1 VQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPN----EPWVICSV 71 (384)
Q Consensus 1 v~fsp~---~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~l~~~~~----~~~~l~s~ 71 (384)
|+|+|+ +..++++++.++.|+|||+.+.+. ...+..+. .|...|++++|+|+ +. +|++|
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~ 91 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------IRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVA 91 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------EEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEE
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------EEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEe
Confidence 468884 444677777788999999985220 11222111 36688999999999 45 78999
Q ss_pred ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecc
Q psy4577 72 SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKK 146 (384)
Q Consensus 72 s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~ 146 (384)
+.|++|++||+.+++. + ..+.+| ...|.+++|+| ++..++ |+.|++||+
T Consensus 92 ~~dg~i~v~d~~~~~~-------------~-----------~~~~~~--~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-------------I-----------KHYVGH--GNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp ETTCEEEEECTTTCCE-------------E-----------EEEESC--CSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEchhceE-------------e-----------eeecCC--CCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 9999999999976411 1 122334 66899999999 777776 889999988
Q ss_pred ccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577 147 NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFG 226 (384)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 226 (384)
........ +
T Consensus 146 ~~~~~~~~-------------------------------------------------~---------------------- 154 (366)
T 3k26_A 146 QTDTLVAI-------------------------------------------------F---------------------- 154 (366)
T ss_dssp TTTEEEEE-------------------------------------------------E----------------------
T ss_pred ecCeEEEE-------------------------------------------------e----------------------
Confidence 54322110 0
Q ss_pred CccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC--------CCC----------CCcc
Q psy4577 227 GFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP--------DPN----------GECH 288 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~----------~~~~ 288 (384)
.....|...|.+++|+|++. +|++++.||.|++||++...... .+. ....
T Consensus 155 -----------~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 155 -----------GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp -----------CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred -----------cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 00025778899999999995 99999999999999986210000 000 0000
Q ss_pred ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCC-------CccccceeeeeccCCcEeEEEEecC--C
Q psy4577 289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE-------NRVIDAKTIFTGHTAVVELELIERL--T 359 (384)
Q Consensus 289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~sp~--~ 359 (384)
......+|...|.+++|+ + .+|++++.||.|++||+++.... ......+..+.+|...|++++|+|+ +
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 122334599999999998 5 69999999999999999887521 1111247778889999999999999 8
Q ss_pred Ccccccc
Q psy4577 360 KKADPVC 366 (384)
Q Consensus 360 ~~~~~~c 366 (384)
..+++.+
T Consensus 300 ~~l~~~~ 306 (366)
T 3k26_A 300 KMLALGN 306 (366)
T ss_dssp SEEEEEC
T ss_pred cEEEEEe
Confidence 8766553
No 103
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-26 Score=198.11 Aligned_cols=254 Identities=13% Similarity=0.138 Sum_probs=181.7
Q ss_pred CCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeee
Q psy4577 39 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTH 118 (384)
Q Consensus 39 ~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (384)
.+.......+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++. +. .+.+|
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~-------------~~-----------~~~~h 73 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGER-------------LG-----------TLDGH 73 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCE-------------EE-----------EECCC
T ss_pred eccccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchh-------------hh-----------hhhhc
Confidence 444556677899999999999999999 888999999999999977511 11 22334
Q ss_pred eeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeec-c
Q psy4577 119 ALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHT-S 193 (384)
Q Consensus 119 ~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (384)
...|.+++|+|+++.++ |+.+++|++.+......+. ...+...+.|.++.. .+..+... .
T Consensus 74 --~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~----------~l~~~~~~~~ 138 (369)
T 3zwl_B 74 --TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGN----------YFLAILDNVM 138 (369)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSS----------EEEEEECCBT
T ss_pred --CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCC----------EEEEecCCcc
Confidence 56799999999998887 8999999998766544433 233455666766542 12222111 0
Q ss_pred CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC--ceEEEEEcCCCCcEEEEEeCCCcEEE
Q psy4577 194 DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVLV 271 (384)
Q Consensus 194 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~s~dg~i~i 271 (384)
.....+.++.+.-......+.. ...........|.+ .+.+++|+|++. +|++++.||.|++
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i 201 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTK----------------VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISK 201 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEE----------------ECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred CCCCEEEEEEecCCccceeecc----------------cccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEE
Confidence 1123444444431110000000 00011233445666 999999999995 8999999999999
Q ss_pred EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe
Q psy4577 272 FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351 (384)
Q Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 351 (384)
||++ . ...++..+.+|...|.+++|+|++ .+|++++.||.|++||+++++ .+..+. +...+.
T Consensus 202 ~d~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-------~~~~~~-~~~~~~ 263 (369)
T 3zwl_B 202 YDVS--------N-NYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ-------VLKKYE-TDCPLN 263 (369)
T ss_dssp EETT--------T-TTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------EEEEEE-CSSCEE
T ss_pred EECC--------C-CcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc-------eeeeec-CCCCce
Confidence 9985 2 234566888999999999999998 799999999999999999987 777776 778899
Q ss_pred EEEEecCCCccccccc
Q psy4577 352 LELIERLTKKADPVCT 367 (384)
Q Consensus 352 ~~~~sp~~~~~~~~c~ 367 (384)
.++|+|+++.++..+.
T Consensus 264 ~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 264 TAVITPLKEFIILGGG 279 (369)
T ss_dssp EEEECSSSSEEEEEEC
T ss_pred eEEecCCCceEEEeec
Confidence 9999999998776653
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=6.8e-27 Score=208.14 Aligned_cols=255 Identities=15% Similarity=0.192 Sum_probs=177.3
Q ss_pred CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577 3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV 82 (384)
Q Consensus 3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~ 82 (384)
++++++ +||+|+.||.|++||+.+ .+....+.+|.+.|++++| ++. +|++|+.||+|++||+
T Consensus 139 ~~~d~~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 139 LQYDDQ-KIVSGLRDNTIKIWDKNT--------------LECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDV 200 (435)
T ss_dssp EECCSS-EEEEEESSSCEEEEESSS--------------CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEES
T ss_pred EEECCC-EEEEEeCCCeEEEEeCCC--------------CeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEEC
Confidence 455675 799999999999999986 4677888999999999999 566 8899999999999999
Q ss_pred ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc---ee
Q psy4577 83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD---LV 155 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~---~~ 155 (384)
.+++. + ..+.+| ...|.+++|+++ .++ |+.+++||........ ..
T Consensus 201 ~~~~~-------------~-----------~~~~~h--~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 252 (435)
T 1p22_A 201 NTGEM-------------L-----------NTLIHH--CEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVL 252 (435)
T ss_dssp SSCCE-------------E-----------EEECCC--CSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred CCCcE-------------E-----------EEEcCC--CCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence 87521 1 122233 567889999754 443 8999999997654432 11
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
..+.. ++.++.+ ++..+.....|.....|+. ....
T Consensus 253 ~~~~~--~v~~~~~---------------------------------------~~~~l~s~~~dg~i~vwd~----~~~~ 287 (435)
T 1p22_A 253 VGHRA--AVNVVDF---------------------------------------DDKYIVSASGDRTIKVWNT----STCE 287 (435)
T ss_dssp CCCSS--CEEEEEE---------------------------------------ETTEEEEEETTSEEEEEET----TTCC
T ss_pred cCCCC--cEEEEEe---------------------------------------CCCEEEEEeCCCeEEEEEC----CcCc
Confidence 12211 1111222 1112222222222222211 1122
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
......+|...|.+++++ + .++++|+.||.|++||++ .+ ..+..+.+|...|.+++| ++ .+|++
T Consensus 288 ~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~--------~~--~~~~~~~~h~~~v~~~~~--~~-~~l~s 351 (435)
T 1p22_A 288 FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIE--------CG--ACLRVLEGHEELVRCIRF--DN-KRIVS 351 (435)
T ss_dssp EEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEC--CS-SEEEE
T ss_pred EEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECC--------CC--CEEEEEeCCcCcEEEEEe--cC-CEEEE
Confidence 355566899999999995 4 489999999999999986 33 356688999999999999 55 69999
Q ss_pred eeCCCcEEEEecCCCCCCCc--cccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 316 ASDDHTICLWDINATPKENR--VIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
|+.||.|++||++++..... ...++..+.+|.+.|++++| ++..+++.+
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 99999999999976542111 11157778899999999999 566555443
No 105
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=7.8e-27 Score=224.06 Aligned_cols=238 Identities=13% Similarity=0.169 Sum_probs=168.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++ +||+|+.||.|+|||+.+ .+.+..+.+|.+.|++++|+|+++ .|++++.|++|++|
T Consensus 61 ~~~s~~~~-~l~~~~~dg~i~vw~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 61 GKFIARKN-WIIVGSDDFRIRVFNYNT--------------GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW 124 (814)
T ss_dssp EEEEGGGT-EEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred EEEeCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEE
Confidence 47999997 799999999999999986 366777889999999999999999 78899999999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
|+.++.. ....+.+| ...+.+++|+| ++..++ |+++++|+.........+
T Consensus 125 ~~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 125 NWENNWA-----------------------LEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp EGGGTSE-----------------------EEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred ECCCCce-----------------------EEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 9976310 11123334 56799999999 777776 899999998765443322
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 235 (384)
..+. ..+...+.|.|.. ++..+.....|.....|. .....
T Consensus 180 ~~~~-~~~v~~~~~~~~~-----------------------------------~~~~l~~~~~dg~i~~~d----~~~~~ 219 (814)
T 3mkq_A 180 TTGQ-ERGVNYVDYYPLP-----------------------------------DKPYMITASDDLTIKIWD----YQTKS 219 (814)
T ss_dssp ECCC-TTCCCEEEECCST-----------------------------------TCCEEEEECTTSEEEEEE----TTTTE
T ss_pred ecCC-CCCEEEEEEEECC-----------------------------------CCCEEEEEeCCCEEEEEE----CCCCc
Confidence 2221 1122334443310 111111122222222211 11122
Q ss_pred eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
......+|...|.+++|+|+++ ++++++.||.|++||+. .+ ..+..+..|...+.+++|+|++...+++
T Consensus 220 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~--------~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS--------TY--KVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETT--------TC--SEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--cEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 3555667999999999999996 99999999999999986 33 3456788899999999999998444466
Q ss_pred eeCCCcEEEEecCCC
Q psy4577 316 ASDDHTICLWDINAT 330 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~ 330 (384)
++.|+.+.+|++...
T Consensus 289 ~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 289 SGFDNGFTVLSLGND 303 (814)
T ss_dssp EEETTEEEEEECSCC
T ss_pred EEeCCCEEEEEcCCC
Confidence 666888999998754
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.9e-27 Score=193.73 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=121.6
Q ss_pred CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc---CCCcEEEEEecCCeEEEEEcccCCCccchhh
Q psy4577 17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP---NEPWVICSVSEDNIMQILSVVCVEPFDDAVE 93 (384)
Q Consensus 17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~---~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~ 93 (384)
|+.|++|++...+ +.+..+.+|...++.++|+| ++. +|+|++.|++|||||+.+++.
T Consensus 156 d~~V~~~~~s~dG-------------~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~------ 215 (356)
T 2w18_A 156 DQQVEVMTFAEDG-------------GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQL------ 215 (356)
T ss_dssp TCEEEEEEECTTS-------------CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCE------
T ss_pred CCcEEEEEECCCC-------------ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcE------
Confidence 7888888885433 56667778998999999998 567 889999999999999988622
Q ss_pred eeeeeeeEEEeccCCcccccceee-eeeccCeeEEEEecCceeee----------------cceeeeeccccccccceee
Q psy4577 94 ERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRVI----------------NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----------------d~~v~~w~~~~~~~~~~~~ 156 (384)
++. +.+ |.....+.+++|+|+|..++ |+++++|+..+.....
T Consensus 216 -------l~t-----------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~--- 274 (356)
T 2w18_A 216 -------LKK-----------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG--- 274 (356)
T ss_dssp -------EEE-----------EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE---
T ss_pred -------EEE-----------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE---
Confidence 122 222 22234577889999998763 3444444443322210
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
+..+.+
T Consensus 275 --------------------------------------------v~~~~~------------------------------ 280 (356)
T 2w18_A 275 --------------------------------------------VMLYCL------------------------------ 280 (356)
T ss_dssp --------------------------------------------EEEECC------------------------------
T ss_pred --------------------------------------------EEEeec------------------------------
Confidence 000000
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE-EEEeCCCCCCeEEE
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY-GLSWNPSLNGYLLS 315 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~~l~s 315 (384)
..+|...+.+..++ + .++|+|+.|++|+|||+. ++. .+.++.+|...+. +++||||| .+|+|
T Consensus 281 ---p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~--------tGk--~l~tL~gH~~~vvs~vafSPDG-~~LaS 343 (356)
T 2w18_A 281 ---PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLL--------LGQ--CTALLPPVSDQHWSFVKWSGTD-SHLLA 343 (356)
T ss_dssp ---CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TCS--EEEEECCC--CCCCEEEECSSS-SEEEE
T ss_pred ---cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECC--------CCc--EEEEecCCCCCeEEEEEECCCC-CEEEE
Confidence 01233333344443 5 489999999999999996 443 4568889987655 68999999 79999
Q ss_pred eeCCCcEEEEecC
Q psy4577 316 ASDDHTICLWDIN 328 (384)
Q Consensus 316 ~s~Dg~i~iwd~~ 328 (384)
|+.|++|+|||+.
T Consensus 344 GS~D~TIklWd~~ 356 (356)
T 2w18_A 344 GQKDGNIFVYHYS 356 (356)
T ss_dssp ECTTSCEEEEEEC
T ss_pred EECCCcEEEecCC
Confidence 9999999999963
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=7.3e-27 Score=205.84 Aligned_cols=250 Identities=14% Similarity=0.198 Sum_probs=163.7
Q ss_pred CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
++|+| ++. +||+|+.||+|+|||+.+.+... ...+.+..+.+|...|++++|+|++..+|++++.|++|++
T Consensus 87 ~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 87 IAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp EEECTTCTT-EEEEEETTSEEEEEECCTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred EEeCCCCCC-EEEEEeCCCeEEEEEccCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence 47999 665 89999999999999998632100 0013456678999999999999998558999999999999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~ 155 (384)
||+.+++ .+..+. ..+| ...|.+++|+|++..++ |+.+++||++.......+
T Consensus 159 wd~~~~~-------------~~~~~~---------~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 159 WDVGTGA-------------AVLTLG---------PDVH--PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp EETTTTE-------------EEEEEC---------TTTC--CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCC-------------ccEEEe---------cCCC--CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 9998751 111110 0223 56789999999998887 899999999876554433
Q ss_pred -ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577 156 -MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 234 (384)
..+.. .....+.|.++.. .+..+.. ......+.++.+. .. ..
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~----------~l~~g~~-~~~d~~i~iwd~~----------------~~---------~~ 257 (402)
T 2aq5_A 215 DRPHEG-TRPVHAVFVSEGK----------ILTTGFS-RMSERQVALWDTK----------------HL---------EE 257 (402)
T ss_dssp ECSSCS-SSCCEEEECSTTE----------EEEEEEC-TTCCEEEEEEETT----------------BC---------SS
T ss_pred ccCCCC-CcceEEEEcCCCc----------EEEEecc-CCCCceEEEEcCc----------------cc---------cC
Confidence 22221 1133445554321 1111100 0012222232221 10 01
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC--CCCceEEEEeCCCCCCe
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQKEGYGLSWNPSLNGY 312 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~~~~~ 312 (384)
........|...+.+++|+|++..++++|+.||.|++||+. .+.. .+..+.. |..+|.+++|+|++ .+
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~--------~~~~-~~~~l~~~~~~~~v~~~~~sp~~-~~ 327 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT--------SEAP-FLHYLSMFSSKESQRGMGYMPKR-GL 327 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC--------SSTT-CEEEEEEECCSSCCSEEEECCGG-GS
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec--------CCCc-ceEeecccccCCcccceEEeccc-cc
Confidence 11223345778899999999997444577789999999996 3321 1223333 56899999999998 67
Q ss_pred EEEeeCCCcEEEEecCCCC
Q psy4577 313 LLSASDDHTICLWDINATP 331 (384)
Q Consensus 313 l~s~s~Dg~i~iwd~~~~~ 331 (384)
+++ .|+.+++|++.+++
T Consensus 328 ~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 328 EVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CGG--GTEEEEEEEEETTE
T ss_pred cee--cceeEEEEEcCCCc
Confidence 765 46699999998764
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-26 Score=200.90 Aligned_cols=202 Identities=18% Similarity=0.296 Sum_probs=155.2
Q ss_pred eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577 44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 123 (384)
Q Consensus 44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (384)
++..+.+|.+.|++++|+|+++ +|++|+.|++|++||+.... ......+.+| ...
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~----------------------~~~~~~~~~h--~~~ 57 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGP 57 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE----------------------EEEEEEECCC--SSC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCc----------------------ceeeeEecCC--CCc
Confidence 3456689999999999999999 78899999999999997420 0011233344 678
Q ss_pred eeEEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577 124 SLTAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN 197 (384)
Q Consensus 124 v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (384)
|.+++|+|+ +..++ |+.|++|++......
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------------------------- 92 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS--------------------------------------------- 92 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE---------------------------------------------
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee---------------------------------------------
Confidence 999999977 77776 889999987542210
Q ss_pred eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecC
Q psy4577 198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYT 275 (384)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~ 275 (384)
.......|...|.+++|+|+ + .+|++++.|+.|++||++
T Consensus 93 --------------------------------------~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 93 --------------------------------------QIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp --------------------------------------EEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECC
T ss_pred --------------------------------------EeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecC
Confidence 02223357888999999999 7 499999999999999997
Q ss_pred CCCCCCCCCCCccceeeecCCCCceEEEEeCC-------------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceee
Q psy4577 276 KHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-------------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 342 (384)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 342 (384)
.........+.+|...|.+++|+| ++ .+|++|+.||.|++||++++.. ...+...
T Consensus 134 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~ 201 (379)
T 3jrp_A 134 --------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQ---TYVLEST 201 (379)
T ss_dssp --------TTSCCCEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTT---EEEEEEE
T ss_pred --------CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCc---ceeeEEE
Confidence 333344557788999999999999 56 7999999999999999987652 1124567
Q ss_pred eeccCCcEeEEEEecC---CCcccccc
Q psy4577 343 FTGHTAVVELELIERL---TKKADPVC 366 (384)
Q Consensus 343 ~~~h~~~v~~~~~sp~---~~~~~~~c 366 (384)
+.+|...|++++|+|+ +..+++.+
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEe
Confidence 7889999999999999 66655543
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.6e-26 Score=194.92 Aligned_cols=202 Identities=9% Similarity=0.035 Sum_probs=138.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEcc--CCCcEEEEEecCCeE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNP--NEPWVICSVSEDNIM 77 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i 77 (384)
+.|+|+ +++|+.|++|++|+....-.. ......+.+..+ .+|.+.|.+++|+| ++. ++++++.|++|
T Consensus 82 ~~~~~~----~~s~s~D~~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i 151 (343)
T 3lrv_A 82 GGEHPA----IISRGPCNRLLLLYPGNQITI-----LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTI 151 (343)
T ss_dssp TCCCCS----EEEECSTTEEEEEETTTEEEE-----EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCE
T ss_pred eeeCCc----eEEecCCCeEEEEEccCceEE-----eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcE
Confidence 356776 899999999999987631000 000012323333 37778999999999 888 78899999999
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD 153 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~ 153 (384)
++||+.+++. +... ..+ ....+.+++|+|++..++ |+.|++||+++....
T Consensus 152 ~~wd~~~~~~-------------~~~~-----------~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~- 205 (343)
T 3lrv_A 152 GFQSYEDDSQ-------------YIVH-----------SAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA- 205 (343)
T ss_dssp EEEESSSSCE-------------EEEE-----------CCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-
T ss_pred EEEECCCCcE-------------EEEE-----------ecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-
Confidence 9999987521 1111 011 134588999999999887 899999988653221
Q ss_pred eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577 154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 233 (384)
T Consensus 206 -------------------------------------------------------------------------------- 205 (343)
T 3lrv_A 206 -------------------------------------------------------------------------------- 205 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE--EEEeCCCCC
Q psy4577 234 KIEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY--GLSWNPSLN 310 (384)
Q Consensus 234 ~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~~~ 310 (384)
...+. .|.+.|++++|+|++. +|++++ |+.|++||++... ....+..+..|...+. +++|+|++
T Consensus 206 ---~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g- 272 (343)
T 3lrv_A 206 ---SSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDV-------GTLAYPTYTIPEFKTGTVTYDIDDSG- 272 (343)
T ss_dssp ---CEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSST-------TCBSSCCCBC-----CCEEEEECTTS-
T ss_pred ---ccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCC-------cceeecccccccccccceEEEECCCC-
Confidence 01111 3788999999999995 899988 5599999997321 1111222333444444 69999999
Q ss_pred CeEEEeeC-CCcEEEEecCCCC
Q psy4577 311 GYLLSASD-DHTICLWDINATP 331 (384)
Q Consensus 311 ~~l~s~s~-Dg~i~iwd~~~~~ 331 (384)
.+|++++. |+.|++|++....
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTT
T ss_pred CEEEEecCCCCcEEEEEEcccc
Confidence 79999998 9999999997765
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=191.18 Aligned_cols=226 Identities=14% Similarity=0.062 Sum_probs=165.2
Q ss_pred CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577 42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE 121 (384)
Q Consensus 42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (384)
.++...+.+|.+.|++++| |++. +|++++.||.|++||+.+++. . ..+..| .
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~-------------~-----------~~~~~~--~ 59 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWL-------------G-----------TVVYTG--Q 59 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEE-------------E-----------EEEEEC--S
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEE-------------E-----------EEeecC--C
Confidence 5788889999999999999 8988 788999999999999966411 1 122233 6
Q ss_pred cCeeEEEEecCceeee----cceeeeeccccccccc---eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccC
Q psy4577 122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD---LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194 (384)
Q Consensus 122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (384)
..+.+++|+|++..++ ++.+++|++....... .+..+.. ++.++.+
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~------------------------- 112 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG--NVCSLSF------------------------- 112 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS--CEEEEEE-------------------------
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc--CEEEEEe-------------------------
Confidence 6799999999999887 8999999886542211 1111111 1111111
Q ss_pred CCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEe
Q psy4577 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFD 273 (384)
Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd 273 (384)
++..+.....|.....|. ..........|...+.+++|+| ++ .++++++.||.|++||
T Consensus 113 --------------~~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 113 --------------QDGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQ 171 (313)
T ss_dssp --------------ETTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred --------------cCCEEEEEeCCCCEEEEc------CCcEEEecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEe
Confidence 112222222333333321 1223555668999999999999 56 5999999999999999
Q ss_pred cCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeE
Q psy4577 274 YTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL 352 (384)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 352 (384)
.. .....+.. |...|.+++|+|++ . |++++.||.|++||+++++ ++..+.+|...|++
T Consensus 172 ~~------------~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 172 ND------------KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD-------VLRTYEGHESFVYC 230 (313)
T ss_dssp TT------------EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEE
T ss_pred cC------------ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh-------hhhhhhcCCceEEE
Confidence 53 23446666 88999999999997 4 9999999999999999988 99999999999999
Q ss_pred EEEecCCCccccc
Q psy4577 353 ELIERLTKKADPV 365 (384)
Q Consensus 353 ~~~sp~~~~~~~~ 365 (384)
++|+|++. +++.
T Consensus 231 ~~~~~~~~-l~~~ 242 (313)
T 3odt_A 231 IKLLPNGD-IVSC 242 (313)
T ss_dssp EEECTTSC-EEEE
T ss_pred EEEecCCC-EEEE
Confidence 99999994 4433
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3.3e-25 Score=197.23 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=179.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE-----EecccccceEEEEEccCCCcEEEEEecCC
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-----IHGGHTAKISDFSWNPNEPWVICSVSEDN 75 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~~l~s~s~D~ 75 (384)
++|+|++ .++++++.|+.|++||+.+. +... .+.+|.+.|.+++|+|++. ++++++.|+
T Consensus 128 ~~~s~~~-~~~~~~~~~~~i~~~d~~~g--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~ 191 (433)
T 3bws_A 128 VRFIDNT-RLAIPLLEDEGMDVLDINSG--------------QTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQAN 191 (433)
T ss_dssp CEESSSS-EEEEEBTTSSSEEEEETTTC--------------CEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGT
T ss_pred EEEeCCC-eEEEEeCCCCeEEEEECCCC--------------eEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCC
Confidence 4789944 58899999999999999862 3333 3458999999999999988 888999999
Q ss_pred eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccc
Q psy4577 76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPF 150 (384)
Q Consensus 76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~ 150 (384)
.|++||+.+++. +. .+..| ...+.+++|+|+++.++ ++.+++||..+..
T Consensus 192 ~v~~~d~~~~~~-------------~~-----------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 192 AVHVFDLKTLAY-------------KA-----------TVDLT--GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEEEEETTTCCE-------------EE-----------EEECS--SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEEECCCceE-------------EE-----------EEcCC--CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999999976411 11 11122 45678999999998774 7899999987654
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccC----CCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD----EQNHLLIASVQLPNEDAQFDASNYDTDKGDFG 226 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 226 (384)
....+... .....+.+.|+.. .+..+..... ....+.+ ||..
T Consensus 246 ~~~~~~~~---~~~~~~~~~~~g~----------~l~~~~~~~~~~~~~dg~i~~----------------~d~~----- 291 (433)
T 3bws_A 246 EIRKTDKI---GLPRGLLLSKDGK----------ELYIAQFSASNQESGGGRLGI----------------YSMD----- 291 (433)
T ss_dssp EEEECCCC---SEEEEEEECTTSS----------EEEEEEEESCTTCSCCEEEEE----------------EETT-----
T ss_pred EEEEecCC---CCceEEEEcCCCC----------EEEEEECCCCccccCCCeEEE----------------EECC-----
Confidence 43322211 1122333433321 1111111000 0011111 1111
Q ss_pred CccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577 227 GFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN 306 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 306 (384)
.+. ......|...+.+++|+|+++.++++++.|+.|++||+. .+. .+..+. +...+.+++|+
T Consensus 292 -----~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~--------~~~--~~~~~~-~~~~~~~~~~s 353 (433)
T 3bws_A 292 -----KEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK--------EKK--VQKSIP-VFDKPNTIALS 353 (433)
T ss_dssp -----TTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT--------TTE--EEEEEE-CSSSEEEEEEC
T ss_pred -----CCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC--------CCc--EEEEec-CCCCCCeEEEc
Confidence 111 223345666889999999997678888999999999985 332 233443 66789999999
Q ss_pred CCCCCeEEEeeC---------------CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 307 PSLNGYLLSASD---------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 307 ~~~~~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
|++ .+|++++. ||.|++||+.+++ .+..+.. ...+.+++|+|+++.+...+.
T Consensus 354 ~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 354 PDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-------VKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp TTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred CCC-CEEEEEecCCCccccccccccccceEEEEEECCCCc-------EEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 998 67777776 5799999999887 7777765 457999999999998876654
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=4.1e-26 Score=200.07 Aligned_cols=227 Identities=8% Similarity=0.084 Sum_probs=134.4
Q ss_pred CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
+++ +||+||.|++|+|||+.+ ......+.+|...|.+++|+|++..+|++++.|++|++||+.++
T Consensus 155 d~~-~las~s~D~tv~~Wd~~~--------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 155 AEQ-VIASVGDDCTLIIWRLTD--------------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEE-EEEEEETTSEEEEEEEET--------------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred CCC-EEEEEECCCeEEEEECCC--------------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 564 899999999999999976 24555667888899999999998768999999999999999876
Q ss_pred CCccchhheee--eeeeEEEeccCCcccccceeeeeeccCeeEEEEe-cCceeee----cceeeeeccccccccceeecc
Q psy4577 86 EPFDDAVEERV--INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL-PDVTRVI----NEEYKIWKKNTPFLYDLVMTH 158 (384)
Q Consensus 86 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~----d~~v~~w~~~~~~~~~~~~~~ 158 (384)
+.......... ....... ............+| ...+.++.|+ |++..++ |+++++||+........+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~--~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~ 296 (393)
T 4gq1_A 220 LSAEENSQTELVKNPWLLTL-NTLPLVNTCHSSGI--ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS 296 (393)
T ss_dssp C----------CSCCCSEEE-ESGGGC------CC--SSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred cccccccccCCcccceEEec-ccccceeeeecccc--cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee
Confidence 43221111100 0000000 00000000112233 5678899987 7888877 899999998654432221111
Q ss_pred cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577 159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 238 (384)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 238 (384)
... +..+.+.++ ..
T Consensus 297 ~~~---------------------------------------~~~~~~~~~---------------------------~~ 310 (393)
T 4gq1_A 297 TMK---------------------------------------LGPKNLLPN---------------------------VQ 310 (393)
T ss_dssp ----------------------------------------------CCSCS---------------------------EE
T ss_pred cCc---------------------------------------cccEEEccc---------------------------cc
Confidence 100 111111000 11
Q ss_pred EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577 239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~ 318 (384)
....+...+..+.+.+.+..++++|+.||.|++||+. .+. ....+.+|..+|++++||||| ++||+++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~--------~~~--~~~~~~~~~~~V~svafspdG-~~LA~as~ 379 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY--------EKD--SNSIPIQLGMPIVDFCWHQDG-SHLAIATE 379 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT--------CTT--CCEEEEECSSCEEEEEECTTS-SEEEEEES
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC--------CCc--EEEEecCCCCcEEEEEEcCCC-CEEEEEeC
Confidence 1111222233333333444577888999999999986 332 344667888999999999999 79999987
Q ss_pred CCcEEEEecC
Q psy4577 319 DHTICLWDIN 328 (384)
Q Consensus 319 Dg~i~iwd~~ 328 (384)
|| +.+|.+.
T Consensus 380 ~G-v~lvrL~ 388 (393)
T 4gq1_A 380 GS-VLLTRLM 388 (393)
T ss_dssp SE-EEEEEEG
T ss_pred CC-eEEEEEe
Confidence 65 5566543
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.9e-24 Score=188.51 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=171.9
Q ss_pred ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577 9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF 88 (384)
Q Consensus 9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~ 88 (384)
.++++++.|+.|++||+.+ .+++..+.+|. .+.+++|+|+++.++++++.|++|++||+.+++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred EEEEEcCCCCEEEEEECCC--------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence 4789999999999999986 36667777775 5899999999996667888999999999977511
Q ss_pred cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccccc
Q psy4577 89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWP 163 (384)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~ 163 (384)
+.. +.. ...+.+++|+|+++.++ ++.+++||..+......+..+. .
T Consensus 67 ------------~~~-----------~~~---~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~ 117 (391)
T 1l0q_A 67 ------------IAT-----------VPA---GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---S 117 (391)
T ss_dssp ------------EEE-----------EEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---S
T ss_pred ------------EEE-----------EEC---CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---C
Confidence 111 111 23688999999999775 6899999998765543332211 1
Q ss_pred ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccc-cccccCcCCCCCCccCCCCceeEEEEee
Q psy4577 164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFD-ASNYDTDKGDFGGFGSVSGKIEIEIKIN 242 (384)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 242 (384)
...+.|.++. ..+. ....+.....|.. ..+.. .... .
T Consensus 118 ~~~~~~s~dg-------------------------------------~~l~~~~~~~~~v~~~d~---~~~~~-~~~~-~ 155 (391)
T 1l0q_A 118 PLGLALSPDG-------------------------------------KKLYVTNNGDKTVSVINT---VTKAV-INTV-S 155 (391)
T ss_dssp EEEEEECTTS-------------------------------------SEEEEEETTTTEEEEEET---TTTEE-EEEE-E
T ss_pred cceEEECCCC-------------------------------------CEEEEEeCCCCEEEEEEC---CCCcE-EEEE-e
Confidence 2233343332 2221 1111111111111 01111 2222 3
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee---CC
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS---DD 319 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s---~D 319 (384)
+...+.+++|+|+++.++++++.|+.|++||++ .+. ....+. +...+.+++|+|++ .+|++++ .|
T Consensus 156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~--------~~~--~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~ 223 (391)
T 1l0q_A 156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV--------TNS--VIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYF 223 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETT--------TTE--EEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSC
T ss_pred cCCCcceEEECCCCCEEEEEeCCCCEEEEEECC--------CCe--EEEEEe-cCCCccceEECCCC-CEEEEEecCcCC
Confidence 345679999999997566888899999999986 332 233333 55679999999998 6788777 68
Q ss_pred CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+.|++||+++++ .+..+..|. .+.+++|+|+++.+...+
T Consensus 224 ~~v~~~d~~~~~-------~~~~~~~~~-~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 224 NTVSMIDTGTNK-------ITARIPVGP-DPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp CEEEEEETTTTE-------EEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCe-------EEEEEecCC-CccEEEEccCCCEEEEEc
Confidence 999999999887 778887765 478999999999775443
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=200.75 Aligned_cols=279 Identities=10% Similarity=0.084 Sum_probs=169.6
Q ss_pred ccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec--------
Q psy4577 50 GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE-------- 121 (384)
Q Consensus 50 gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 121 (384)
.|.+.|++++|+|++. +||+|+.||.|++||+..++..... ......+...+.+|..+
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQSHEPEFDYLKSLE 91 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccccccccccccccc
Confidence 3678999999999999 8899999999999999875211000 00000012233445322
Q ss_pred --cCeeEEEEecCc--eeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccce---eEEEEee
Q psy4577 122 --WPSLTAQWLPDV--TRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSI---HRLILGT 190 (384)
Q Consensus 122 --~~v~~~~~~~~~--~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 190 (384)
..|.+++|+|++ ..++ |++|++|++.................. .. ..........+. .......
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~--~~---~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR--YR---DPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-------------CCCCCSCCCCEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccc--cc---CcccccceEeccccchheeeec
Confidence 779999999998 5565 999999998654321100000000000 00 000000000000 0000000
Q ss_pred e---ccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE-------EEeecCCceEEEEEcCCCCcEE
Q psy4577 191 H---TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE-------IKINHEGEVNRARYMPQNPCVI 260 (384)
Q Consensus 191 ~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~v~~~p~~~~~l 260 (384)
. .....+...+..+.+++++..+... .|.....|.... ...... ....|...|++++|+|++..+|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI---TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE---EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC---CCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence 0 0011222346677777776666655 666666654311 111111 1347899999999999984599
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC------------ceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577 261 ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK------------EGYGLSWNPSLNGYLLSASDDHTICLWDIN 328 (384)
Q Consensus 261 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~ 328 (384)
++|+.||.|++||++.... .......+.+|.. .|.+++|+|++ .+|++++. +.|++||++
T Consensus 243 ~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASAL------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp EEEETTSCEEEEETTTCSS------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETT
T ss_pred EEEeCCCeEEEEECcCCcc------ccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCC
Confidence 9999999999999973210 1112456777765 89999999998 79999999 999999999
Q ss_pred C-CCCCCccccceeeeeccCCc---------------EeEEEEecCCCcccccc
Q psy4577 329 A-TPKENRVIDAKTIFTGHTAV---------------VELELIERLTKKADPVC 366 (384)
Q Consensus 329 ~-~~~~~~~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~~~~c 366 (384)
+ ++ ++..+.+|... +..++|+|+++.+++.+
T Consensus 315 ~~~~-------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 315 MENR-------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp CCSS-------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred CCcc-------ccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 7 66 88888888642 33499999999876553
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=2.2e-25 Score=191.91 Aligned_cols=237 Identities=11% Similarity=0.015 Sum_probs=160.5
Q ss_pred EecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeE
Q psy4577 47 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT 126 (384)
Q Consensus 47 ~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 126 (384)
...+|.+.|++++|+|++. +|++++.|+.|++|++..++.. . ....+.+| ...|.+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~-------------------~--~~~~~~~~--~~~v~~ 61 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKN-------------------V--DLLQSLRY--KHPLLC 61 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTE-------------------E--EEEEEEEC--SSCEEE
T ss_pred cccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcc-------------------c--cceeeeec--CCceEE
Confidence 3468999999999999999 7889999999999999774100 0 00112233 678999
Q ss_pred EEEecCce-eee----cceeeeecc-ccccccceeec--ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 127 AQWLPDVT-RVI----NEEYKIWKK-NTPFLYDLVMT--HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 127 ~~~~~~~~-~~~----d~~v~~w~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
++|+|+++ .++ ++.+++|++ ....... +.. +. .++..+.|.+
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~--~~v~~l~~~~--------------------------- 111 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA-LTNNEAN--LGICRICKYG--------------------------- 111 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSEEE-CBSCCCC--SCEEEEEEET---------------------------
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCceEe-ccccCCC--CceEEEEeCC---------------------------
Confidence 99999999 776 899999998 7654421 222 21 1223344433
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCc----eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK----IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 274 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~ 274 (384)
+..+.....|.....|......... ........|...|.+++|+|++ +++++.|+.|++||+
T Consensus 112 -----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 112 -----------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRL 177 (342)
T ss_dssp -----------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE---EEEEESTTEEEEEES
T ss_pred -----------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc---EEEEeCCCeEEEEEC
Confidence 1222222222222222110000000 0000112378899999999865 888899999999999
Q ss_pred CCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCC------CCCCccccceeeeeccC
Q psy4577 275 TKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINAT------PKENRVIDAKTIFTGHT 347 (384)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~h~ 347 (384)
+.. ...........|...|.+++|+| ++ .+|++++.||.|++|+++.. + ....+.+|.
T Consensus 178 ~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~~~~~~~~~ 242 (342)
T 1yfq_A 178 PLC-------EDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSS-------KRFAFRCHR 242 (342)
T ss_dssp SCC-------TTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCT-------TCEEEECCC
T ss_pred Ccc-------ccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccc-------cceeeeccc
Confidence 720 22223335567888999999999 98 79999999999999999876 4 777788876
Q ss_pred C---------cEeEEEEecCCCcccccc
Q psy4577 348 A---------VVELELIERLTKKADPVC 366 (384)
Q Consensus 348 ~---------~v~~~~~sp~~~~~~~~c 366 (384)
. .|++++|+|+++.+++.+
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccceeEEEEEEcCCCCEEEEec
Confidence 5 999999999999877654
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=6.2e-25 Score=193.69 Aligned_cols=218 Identities=17% Similarity=0.229 Sum_probs=153.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCc--EEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW--VICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~--~l~s~s~D~~i~ 78 (384)
++|+|++..+|++++.|+.|++||+.+ .+....+. |...+.+++|+|.+.. ++++++.|+.|+
T Consensus 105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 105 VQWYPHDTGMFTSSSFDKTLKVWDTNT--------------LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp EEECTTCTTCEEEEETTSEEEEEETTT--------------TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred EEEccCCCcEEEEEeCCCeEEEeeCCC--------------Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 468995555899999999999999986 24444443 6778999999985432 788999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeecccccccc-
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLY- 152 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~- 152 (384)
+||+..++.. ..+.+| ...|.+++|+|++.. ++ |+.+++||++.....
T Consensus 170 ~~d~~~~~~~------------------------~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 170 LCDLKSGSCS------------------------HILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp EEESSSSCCC------------------------EEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred EEeCCCccee------------------------eeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 9999775211 122233 567899999999985 44 899999998654321
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
..+...... .
T Consensus 224 ~~~~~~~~~------------------------------------------------------------~---------- 233 (408)
T 4a11_B 224 ITLDQHNGK------------------------------------------------------------K---------- 233 (408)
T ss_dssp EECCTTTTC------------------------------------------------------------S----------
T ss_pred ccccccccc------------------------------------------------------------c----------
Confidence 100000000 0
Q ss_pred CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC----------------------------
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPN---------------------------- 284 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------------------- 284 (384)
..........|...|.+++|+|++. +|++++.||.|++||++.........
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 0000011125778899999999885 88899999999999987432110000
Q ss_pred ---------CCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 285 ---------GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 285 ---------~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
....++..+.+|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--
T ss_pred CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC
Confidence 1123456778899999999999998 799999999999999999887
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.7e-24 Score=179.51 Aligned_cols=242 Identities=8% Similarity=0.008 Sum_probs=148.8
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-------------------------ceEEEEEccC-
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-------------------------KISDFSWNPN- 63 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-------------------------~V~~l~~~~~- 63 (384)
.+++++ ..+|++|+.... ...+.++++.+|.. .|.+|+|+|+
T Consensus 56 ~~~~~~-~~~v~lw~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~ 123 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDA-----------WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDD 123 (356)
T ss_dssp EEEEEE-SSEEEEEEESSS-----------SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred EEEEec-cceEEEcccCCC-----------ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCc
Confidence 566666 568999999862 11255666666654 4566666667
Q ss_pred ---CCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCC-cccccceeeeeeccCeeEEEEec---Cceee
Q psy4577 64 ---EPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLP---DVTRV 136 (384)
Q Consensus 64 ---~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~ 136 (384)
++ .+++++.+ +++|++.+++.+.... ..-++.+++|.... ......+.+| ...+..++|+| ++..+
T Consensus 124 ~~~~~-~l~s~g~~--~~v~~l~~g~lv~ss~--~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 124 ESEKQ-VLLKSGNI--KAVLGLTKRRLVSSSG--TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp --CCE-EEEEEEEE--EEEEEETTTEEEEEES--SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEE
T ss_pred ccccc-EEEeCCCe--EEEEecCCCcEEEecc--cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceE
Confidence 66 56666643 7788886654322211 00246677777622 3233444556 44566777777 55677
Q ss_pred e----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc
Q psy4577 137 I----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ 212 (384)
Q Consensus 137 ~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 212 (384)
+ |++|++||..++.....+..+.
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~----------------------------------------------------- 223 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDD----------------------------------------------------- 223 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC-----------------------------------------------------
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCC-----------------------------------------------------
Confidence 6 9999999997765433322110
Q ss_pred cccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCc-----------EEEEEeCCCcEEEEecCCCCCCC
Q psy4577 213 FDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPC-----------VIATKTPSSDVLVFDYTKHPSKP 281 (384)
Q Consensus 213 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-----------~l~s~s~dg~i~iwd~~~~~~~~ 281 (384)
.+...+.+++|+|++.. .+++|+.|++|++||..
T Consensus 224 -----------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~------ 268 (356)
T 2w18_A 224 -----------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK------ 268 (356)
T ss_dssp --------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT------
T ss_pred -----------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC------
Confidence 01123555666666631 24788999999999986
Q ss_pred CCCCCccceee---ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe-EEEEec
Q psy4577 282 DPNGECHPDLR---LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE-LELIER 357 (384)
Q Consensus 282 ~~~~~~~~~~~---~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp 357 (384)
.+....... ..+|...+.+..++ + .++|+|+.|++|+|||+.+++ ++.++.+|...+. .++|||
T Consensus 269 --tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-------~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 269 --TTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-------CTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp --TTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS-------EEEEECCC--CCCCEEEECS
T ss_pred --CCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc-------EEEEecCCCCCeEEEEEECC
Confidence 443322211 14777666555554 6 699999999999999999998 9999999987654 699999
Q ss_pred CCCcccccccccc
Q psy4577 358 LTKKADPVCTLEK 370 (384)
Q Consensus 358 ~~~~~~~~c~~~~ 370 (384)
+|+.+++.+....
T Consensus 337 DG~~LaSGS~D~T 349 (356)
T 2w18_A 337 TDSHLLAGQKDGN 349 (356)
T ss_dssp SSSEEEEECTTSC
T ss_pred CCCEEEEEECCCc
Confidence 9999887765443
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.1e-25 Score=199.79 Aligned_cols=229 Identities=86% Similarity=1.366 Sum_probs=167.4
Q ss_pred cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc
Q psy4577 138 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN 217 (384)
Q Consensus 138 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 217 (384)
+..+++|+.+.+.+|+++..+...||+++++|.|+........+...++++|+++....+.+.+..+.++..........
T Consensus 22 ~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~ 101 (430)
T 2xyi_A 22 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH 101 (430)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----------
T ss_pred hHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccc
Confidence 55677888888888999999999999999999999876677778888999999988788999999988764433333344
Q ss_pred ccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC
Q psy4577 218 YDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 297 (384)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 297 (384)
+|.+......+....+++.......|.+.|++++|+|++..+||+++.||.|++||+..........+...++..+.+|.
T Consensus 102 ~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 181 (430)
T 2xyi_A 102 YDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ 181 (430)
T ss_dssp ----------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS
T ss_pred ccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC
Confidence 55444444344445566767778899999999999998557999999999999999975433322223456777899999
Q ss_pred CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
..|++++|+|++..+|++|+.||+|++||+..+......+.+...+.+|...|.+++|+|++.....+|
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 999999999998449999999999999999986533333344677788999999999999766555444
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-25 Score=209.82 Aligned_cols=200 Identities=18% Similarity=0.292 Sum_probs=152.8
Q ss_pred EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577 46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL 125 (384)
Q Consensus 46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 125 (384)
.++.||.+.|++++|+|+++ +|++|+.||+|++||+.... ......+.+| ..+|.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~----------------------~~~~~~l~~h--~~~V~ 57 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGPVW 57 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTE----------------------EEEEEEECCC--SSCEE
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCC----------------------CccceeccCC--cCceE
Confidence 45679999999999999999 77899999999999987420 0011233445 67899
Q ss_pred EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577 126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL 199 (384)
Q Consensus 126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (384)
+++|+|+ +..++ |+.|++|++.+...
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------------------------------------------------ 89 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------------------------------------------ 89 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEE------------------------------------------------
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcc------------------------------------------------
Confidence 9999988 77776 89999998644211
Q ss_pred EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577 200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH 277 (384)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~ 277 (384)
........|...|.+++|+|+ + .++++|+.||.|++||++
T Consensus 90 -----------------------------------~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~-- 131 (753)
T 3jro_A 90 -----------------------------------SQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFK-- 131 (753)
T ss_dssp -----------------------------------EEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECC--
T ss_pred -----------------------------------cccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEee--
Confidence 002233468889999999998 7 499999999999999997
Q ss_pred CCCCCCCCCccceeeecCCCCceEEEEeCC-------------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577 278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNP-------------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344 (384)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 344 (384)
.+.......+.+|...|.+++|+| ++ .+|++|+.||+|++||++++.. ...+...+.
T Consensus 132 ------~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~ 201 (753)
T 3jro_A 132 ------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQ---TYVLESTLE 201 (753)
T ss_dssp ------SSSCCCCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTT---EEEEEEEEC
T ss_pred ------cCCCcceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcc---cceeeeeec
Confidence 333344557789999999999999 46 7999999999999999988742 112667788
Q ss_pred ccCCcEeEEEEecC---CCcccccc
Q psy4577 345 GHTAVVELELIERL---TKKADPVC 366 (384)
Q Consensus 345 ~h~~~v~~~~~sp~---~~~~~~~c 366 (384)
+|...|++++|+|+ +..+++.+
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEe
Confidence 99999999999999 66655543
No 120
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=1.2e-24 Score=193.66 Aligned_cols=231 Identities=17% Similarity=0.240 Sum_probs=154.3
Q ss_pred CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
++. +||+|+.||+|++||+.+ .+.+..+.+|...|.+++|++ . ++++|+.|++|++||+..+
T Consensus 182 ~~~-~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 182 DER-VIITGSSDSTVRVWDVNT--------------GEMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp CSS-EEEEEETTSCEEEEESSS--------------CCEEEEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSS
T ss_pred CCC-EEEEEcCCCeEEEEECCC--------------CcEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCC
Confidence 554 899999999999999986 367788889999999999974 3 7889999999999999775
Q ss_pred CCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeeccccc
Q psy4577 86 EPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALE 161 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~ 161 (384)
+.. .....+.+| ...|.+++| ++..++ |+.+++||..+......+..+...
T Consensus 244 ~~~---------------------~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (435)
T 1p22_A 244 TDI---------------------TLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298 (435)
T ss_dssp SCC---------------------EEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCc---------------------eeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence 221 001123344 567888888 555555 899999999876554444333221
Q ss_pred ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEe
Q psy4577 162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI 241 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 241 (384)
+.++.+. +..+.+...|.....|+. ..........
T Consensus 299 --v~~~~~~---------------------------------------~~~l~~g~~dg~i~iwd~----~~~~~~~~~~ 333 (435)
T 1p22_A 299 --IACLQYR---------------------------------------DRLVVSGSSDNTIRLWDI----ECGACLRVLE 333 (435)
T ss_dssp --EEEEEEE---------------------------------------TTEEEEEETTSCEEEEET----TTCCEEEEEC
T ss_pred --EEEEEeC---------------------------------------CCEEEEEeCCCeEEEEEC----CCCCEEEEEe
Confidence 1112110 111122222222222211 1112355566
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
+|...|.+++| ++ .+|++|+.||.|++||++....... ......+..+.+|.+.|++++| ++ .+|++|+.||+
T Consensus 334 ~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~ 406 (435)
T 1p22_A 334 GHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDT 406 (435)
T ss_dssp CCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSE
T ss_pred CCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccc-cccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCE
Confidence 89999999999 55 4899999999999999863211100 0111246678899999999999 65 68999999999
Q ss_pred EEEEecCCCC
Q psy4577 322 ICLWDINATP 331 (384)
Q Consensus 322 i~iwd~~~~~ 331 (384)
|++||+.+..
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999998875
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=2.1e-23 Score=183.02 Aligned_cols=253 Identities=9% Similarity=0.048 Sum_probs=167.2
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|+++.++++++.|++|++||+.+ .+.+..+..|. .|.+++|+|+++.++++++.|+.|++|
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~--------------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTAT--------------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTT--------------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCC--------------CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence 479999986568888999999999976 35666666555 899999999999666677788999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV 155 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~ 155 (384)
|+.+++. +... .. ...+.+++|+|+++.++ ++.+++||..+......+
T Consensus 102 d~~~~~~-------------~~~~-----------~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 102 DTTSNTV-------------AGTV-----------KT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp ETTTTEE-------------EEEE-----------EC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ECCCCeE-------------EEEE-----------eC---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9987511 1111 11 23567999999998774 899999998776554333
Q ss_pred ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccc-ccccCcCCCCCCccCCCCc
Q psy4577 156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDA-SNYDTDKGDFGGFGSVSGK 234 (384)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~ 234 (384)
..+. ....+.|.++. ..+.+ ...+.....|+. ...
T Consensus 155 ~~~~---~~~~~~~~~dg-------------------------------------~~l~~~~~~~~~v~~~d~----~~~ 190 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDG-------------------------------------TKVYVANFDSMSISVIDT----VTN 190 (391)
T ss_dssp ECCS---SEEEEEECTTS-------------------------------------SEEEEEETTTTEEEEEET----TTT
T ss_pred ecCC---CcceEEECCCC-------------------------------------CEEEEEeCCCCEEEEEEC----CCC
Confidence 2221 11233343332 11111 111111111110 011
Q ss_pred eeEEEEeecCCceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577 235 IEIEIKINHEGEVNRARYMPQNPCVIATKT---PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG 311 (384)
Q Consensus 235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 311 (384)
.......+...+.+++|+|+++ ++++++ .++.|++||++ .+ +.+..+..|. .+.+++|+|++ +
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~--------~~--~~~~~~~~~~-~~~~~~~s~dg-~ 256 (391)
T 1l0q_A 191 -SVIDTVKVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTG--------TN--KITARIPVGP-DPAGIAVTPDG-K 256 (391)
T ss_dssp -EEEEEEECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETT--------TT--EEEEEEECCS-SEEEEEECTTS-S
T ss_pred -eEEEEEecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECC--------CC--eEEEEEecCC-CccEEEEccCC-C
Confidence 1223345677899999999996 566655 78999999986 33 2345666655 47899999998 5
Q ss_pred eE-EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe---EEEEecCCC
Q psy4577 312 YL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE---LELIERLTK 360 (384)
Q Consensus 312 ~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~sp~~~ 360 (384)
+| ++++.|+.|++||+.+++ .+..+..|..+.. .+.+.|++.
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATNT-------ITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------EEEEEECSSSEECCSSCEEECSSCC
T ss_pred EEEEEcCCCCEEEEEECCCCc-------EEEEEECCcCCCccceeeecccccc
Confidence 55 788899999999999987 7777766655432 244555443
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=1e-23 Score=183.15 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=153.0
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE--ccCCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~--~~~~~~~l~s~s~D~~i~ 78 (384)
++|+|++. +||+|+.||.|++||+.+ .+.. .+.+|...|++++| +|++. +|++++.|++|+
T Consensus 92 ~~~~~~~~-~l~s~~~dg~v~iwd~~~--------------~~~~-~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~ 154 (368)
T 3mmy_A 92 VCWSDDGS-KVFTASCDKTAKMWDLSS--------------NQAI-QIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLK 154 (368)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTT--------------TEEE-EEEECSSCEEEEEEEECSSCE-EEEEEETTSEEE
T ss_pred EEECcCCC-EEEEEcCCCcEEEEEcCC--------------CCce-eeccccCceEEEEEEeCCCCC-EEEEccCCCcEE
Confidence 47999997 799999999999999986 2333 35679999999999 88888 788999999999
Q ss_pred EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeeeccccccccceee
Q psy4577 79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w~~~~~~~~~~~~ 156 (384)
+||+.+++.. ..+. . ...+.++.+.++...+. ++.+++|+...........
T Consensus 155 vwd~~~~~~~-------------~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 155 FWDTRSSNPM-------------MVLQ-----------L---PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp EECSSCSSCS-------------EEEE-----------C---SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred EEECCCCcEE-------------EEEe-----------c---CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence 9999875221 1111 1 22355666665533333 8999999986543211111
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
............+.+... .....+..+.. ...+.++.+.... ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----dg~i~i~~~~~~~------------------------~~~~ 253 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQ------NKPTGFALGSI----EGRVAIHYINPPN------------------------PAKD 253 (368)
T ss_dssp CCSCSSCEEEEEEEECTT------SCEEEEEEEET----TSEEEEEESSCSC------------------------HHHH
T ss_pred cccccCCCceEEEcccCC------CCCCeEEEecC----CCcEEEEecCCCC------------------------cccc
Confidence 111111111111111110 00000111111 2222333222100 0011
Q ss_pred EEEEee------------cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577 237 IEIKIN------------HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS 304 (384)
Q Consensus 237 ~~~~~~------------~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 304 (384)
...... |...|++++|+|++. +|++|+.||.|++||++ .+ ..+..+.+|..+|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKD--------AR--TKLKTSEQLDQPISACC 322 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETT--------TT--EEEEECCCCSSCEEEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECC--------CC--cEEEEecCCCCCceEEE
Confidence 122223 334799999999995 89999999999999986 33 35668889999999999
Q ss_pred eCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 305 WNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
|+|++ .+|++|+.|+..+.|++...+
T Consensus 323 ~s~~g-~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 323 FNHNG-NIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp ECTTS-SCEEEEECCCSTTCGGGCCTT
T ss_pred ECCCC-CeEEEEecccccccccccCCC
Confidence 99999 799999999887777766543
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=4.1e-24 Score=184.77 Aligned_cols=234 Identities=10% Similarity=0.051 Sum_probs=142.7
Q ss_pred eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577 44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 123 (384)
Q Consensus 44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (384)
.+....+|.+.|++++|+|+|+ +|++|+.| .+++|++...+. .. ..+ ...
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~-------------~~-------------~~~--~~~ 60 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAH-------------IM-------------SQE--MRH 60 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEE-------------EE-------------EEE--CSC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcce-------------ee-------------eee--cCC
Confidence 3445678999999999999999 77777766 478999866310 00 000 113
Q ss_pred eeEEEEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577 124 SLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH 198 (384)
Q Consensus 124 v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (384)
+..+++.+++..++ ++++++||..+......+. ...++.++.+.++. +.+.. .+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~------------~~~~~-----~~~ 120 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF------------IVVSY-----GDV 120 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE------------EEEEE-----TTE
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE------------EEEEE-----cCE
Confidence 55677888777664 6799999987765433222 11123334333221 01110 122
Q ss_pred EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEE--EeCCCcEEEEecCC
Q psy4577 199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTK 276 (384)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s--~s~dg~i~iwd~~~ 276 (384)
+.++.+. ...... ..+. . ....+++++ . +++. |+.||.|++||++.
T Consensus 121 i~i~d~~--------------~~~~~~-------~~~~-----~---~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 121 ISVFKFG--------------NPWKRI-------TDDI-----R---FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp EEEEESS--------------TTCCBS-------SCCE-----E---EEEEEEEET--T-EEEEEESSCTTCEEEEECCC
T ss_pred EEEEECC--------------CCceee-------EEec-----c---CCceEEEEc--c-EEEEeCCCcCcEEEEEECCC
Confidence 2333222 000000 0110 0 233456666 2 4454 68999999999973
Q ss_pred CCCCCC-----CCCCccc-eeeecCCCCceEEEEeCCCCCCeEEEeeCCCc-EEEEecCCCCCCCccccceeeee-c-cC
Q psy4577 277 HPSKPD-----PNGECHP-DLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT-ICLWDINATPKENRVIDAKTIFT-G-HT 347 (384)
Q Consensus 277 ~~~~~~-----~~~~~~~-~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~-~-h~ 347 (384)
...... ......+ +..+.+|..+|++++|+|+| .+||||+.|++ |++||+++++ ++.++. + |.
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~-------~~~~~~~g~h~ 240 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV-------LVREFRRGLDR 240 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC-------EEEEEECTTCC
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc-------EEEEEEcCCCC
Confidence 210000 0001123 66889999999999999998 79999999999 9999999998 889998 6 99
Q ss_pred CcEeEEEEecCCCccccccc
Q psy4577 348 AVVELELIERLTKKADPVCT 367 (384)
Q Consensus 348 ~~v~~~~~sp~~~~~~~~c~ 367 (384)
..|++++|+|+++.+++.+.
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp SCEEEEEECTTSCEEEEEET
T ss_pred CcEEEEEECCCCCEEEEEEC
Confidence 99999999999998776643
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.9e-24 Score=189.18 Aligned_cols=251 Identities=11% Similarity=0.009 Sum_probs=158.3
Q ss_pred cceEEEEEccCCCcEEEEEecCCeEEEEEcccCC---Cccchhheee---------------------ee-eeE------
Q psy4577 53 AKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE---PFDDAVEERV---------------------IN-EEY------ 101 (384)
Q Consensus 53 ~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~---~~~~~~~~~~---------------------~~-~~~------ 101 (384)
.++++++|+|+|+ +|++ +.++.|++||+.+++ .+........ .+ ...
T Consensus 5 ~p~~~v~~s~dg~-~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSS-EEEE-EETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCC-EEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4789999999999 6644 568899999998875 2111100000 00 000
Q ss_pred ----EEeccCCcccccceeeeeeccCeeEEEEecCceee-e----cceeeeeccc--cccccceeecccccccceeeeec
Q psy4577 102 ----KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV-I----NEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWL 170 (384)
Q Consensus 102 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~----d~~v~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~ 170 (384)
+.++...+ .....+| ...|.+++|+|+++.+ + |+.+++|++. .......+..+.....+.++.|.
T Consensus 83 ~~~~~~~~~~~~--~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 83 SIKRTAAKVPSP--GLGAPPI--YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp -------------------CC--CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred cccccCccccCC--CCCCCcc--CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 00000000 0001112 4469999999999986 4 8999999998 55554444333333334455555
Q ss_pred cCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEE
Q psy4577 171 PDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRA 250 (384)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 250 (384)
|+.. .+.....+.....|................+|...|+++
T Consensus 159 p~~~-------------------------------------~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 201 (450)
T 2vdu_B 159 EDDT-------------------------------------TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201 (450)
T ss_dssp TTSS-------------------------------------EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred CCCC-------------------------------------EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE
Confidence 5432 222211111111111100000000122345799999999
Q ss_pred EEcCC---CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577 251 RYMPQ---NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD 326 (384)
Q Consensus 251 ~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd 326 (384)
+|+|+ + .+|++|+.|+.|++||++ .+. .+.. +.+|...|.+++|+ ++ .+|++|+.|++|++||
T Consensus 202 ~~sp~~~~~-~~l~s~~~d~~i~vwd~~--------~~~--~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 202 HLIKDSDGH-QFIITSDRDEHIKISHYP--------QCF--IVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWD 268 (450)
T ss_dssp EEEECTTSC-EEEEEEETTSCEEEEEES--------CTT--CEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEE
T ss_pred EEcCCCCCC-cEEEEEcCCCcEEEEECC--------CCc--eeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEE
Confidence 99999 7 599999999999999996 332 2334 56899999999999 88 7999999999999999
Q ss_pred cCCCCCCCccccceeeeec-------------------------cCCcEeEEEEecCCCcccccc
Q psy4577 327 INATPKENRVIDAKTIFTG-------------------------HTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~-------------------------h~~~v~~~~~sp~~~~~~~~c 366 (384)
+++++ ++..+.. +...|.+++|+|+++.+++.+
T Consensus 269 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 269 WKTGK-------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp TTTCC-------EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred CCCCc-------EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 99987 6666652 235799999999999887776
No 125
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=4.8e-23 Score=183.90 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=166.6
Q ss_pred ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577 9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF 88 (384)
Q Consensus 9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~ 88 (384)
.+|++|+.||+|++||+.+ .+.+..+.+|...|.+++|++ . .+++|+.|++|++||+.+++..
T Consensus 170 ~~l~s~~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAET--------------GECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp TEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEE
T ss_pred CEEEEEeCCCeEEEEECCc--------------CcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEE
Confidence 3799999999999999986 477788899999999999964 4 6889999999999999876422
Q ss_pred cch----------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccc
Q psy4577 89 DDA----------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT 148 (384)
Q Consensus 89 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~ 148 (384)
... ......++.+++|+.........+.+| ...+.+++| ++..++ |+.+++||+.+
T Consensus 233 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence 111 011224567899987766554555556 677889998 666665 89999999987
Q ss_pred ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF 228 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 228 (384)
......+..+... ...+.+. +..+.+...|.....|..
T Consensus 309 ~~~~~~~~~~~~~--v~~~~~~---------------------------------------~~~l~~~~~dg~i~vwd~- 346 (445)
T 2ovr_B 309 GNCIHTLTGHQSL--TSGMELK---------------------------------------DNILVSGNADSTVKIWDI- 346 (445)
T ss_dssp CCEEEEECCCCSC--EEEEEEE---------------------------------------TTEEEEEETTSCEEEEET-
T ss_pred CCEEEEEcCCccc--EEEEEEe---------------------------------------CCEEEEEeCCCeEEEEEC-
Confidence 6554433332211 1111110 111111122222222211
Q ss_pred cCCCCceeEEEEee---cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee-----cCCCCce
Q psy4577 229 GSVSGKIEIEIKIN---HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL-----RGHQKEG 300 (384)
Q Consensus 229 ~~~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~i 300 (384)
..+. ....... |...|.+++|++ .++++|+.||.|++||++ ++. .+..+ .+|.+.|
T Consensus 347 --~~~~-~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~--------~~~--~~~~~~~~~~~~~~~~v 410 (445)
T 2ovr_B 347 --KTGQ-CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK--------TGE--FIRNLVTLESGGSGGVV 410 (445)
T ss_dssp --TTCC-EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT--------TCC--EEEEEEECTTGGGTCEE
T ss_pred --CCCc-EEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC--------CCc--eeeeeeccccCCCCceE
Confidence 0111 1333333 888999999964 489999999999999986 343 23344 4788899
Q ss_pred EEEEeCCCCCCeEEEeeCCCc----EEEEecCCC
Q psy4577 301 YGLSWNPSLNGYLLSASDDHT----ICLWDINAT 330 (384)
Q Consensus 301 ~~~~~s~~~~~~l~s~s~Dg~----i~iwd~~~~ 330 (384)
++++|+|++ .+|++|+.||+ |.+||++..
T Consensus 411 ~~~~~s~~~-~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 411 WRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSSE-EEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEecCCE-EEEEEcccCCCCccEEEEEECCCC
Confidence 999999998 79999999998 999999864
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.1e-21 Score=172.98 Aligned_cols=246 Identities=11% Similarity=0.115 Sum_probs=160.4
Q ss_pred CCceEEEeeCC------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC---eE
Q psy4577 7 NETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN---IM 77 (384)
Q Consensus 7 ~~~~lat~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~---~i 77 (384)
+. .||.++.+ ++|++||+.. .....+.+|...|.+++|+|+|+ .|++++.|+ .|
T Consensus 143 ~~-~l~~~s~~~~~~~~~~i~i~d~~g---------------~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i 205 (415)
T 2hqs_A 143 RT-RIAYVVQTNGGQFPYELRVSDYDG---------------YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSAL 205 (415)
T ss_dssp TC-EEEEEEECSSSSCCEEEEEEETTS---------------CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEE
T ss_pred CC-EEEEEEecCCCCccceEEEEcCCC---------------CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEE
Confidence 44 45555544 7999999974 23355567889999999999999 777888875 99
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----c--ceeeeecccccc
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----N--EEYKIWKKNTPF 150 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d--~~v~~w~~~~~~ 150 (384)
++||+.+++. . .+..| ...+.+++|+|+|+.++ + ..+.+||..+..
T Consensus 206 ~~~d~~tg~~-------------~------------~l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 206 VIQTLANGAV-------------R------------QVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp EEEETTTCCE-------------E------------EEECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred EEEECCCCcE-------------E------------EeecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 9999987511 0 11122 34678999999998776 3 348888887655
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
...+ ..+. .....+.|.|++. .+.+..... ....+.+ +|...
T Consensus 259 ~~~l-~~~~--~~~~~~~~spdg~----------~l~~~s~~~-g~~~i~~----------------~d~~~-------- 300 (415)
T 2hqs_A 259 IRQV-TDGR--SNNTEPTWFPDSQ----------NLAFTSDQA-GRPQVYK----------------VNING-------- 300 (415)
T ss_dssp EEEC-CCCS--SCEEEEEECTTSS----------EEEEEECTT-SSCEEEE----------------EETTS--------
T ss_pred EEeC-cCCC--CcccceEECCCCC----------EEEEEECCC-CCcEEEE----------------EECCC--------
Confidence 4222 2221 1233455555432 111111100 0001111 11110
Q ss_pred CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577 231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP 307 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 307 (384)
+. ......+...+.+++|+|+|+ +|+.++.+ ..|++||+. .+.. ..+..|. .+.+++|+|
T Consensus 301 --~~--~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~--------~~~~---~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 301 --GA--PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLA--------TGGV---QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp --SC--CEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETT--------TCCE---EECCCSS-SCEEEEECT
T ss_pred --CC--EEEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECC--------CCCE---EEecCCC-CcCCeEEcC
Confidence 11 122234567788999999997 66665543 589999985 3332 3455554 899999999
Q ss_pred CCCCeEEEeeCCC---cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 308 SLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 308 ~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
+| ++|++++.|+ .|++||+.+. ....+.+|.+.|.+++|+|...
T Consensus 364 dg-~~l~~~s~~~~~~~l~~~d~~g~--------~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NG-TMVIYSSSQGMGSVLNLVSTDGR--------FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TS-SEEEEEEEETTEEEEEEEETTSC--------CEEECCCSSSEEEEEEECCCCC
T ss_pred CC-CEEEEEEcCCCccEEEEEECCCC--------cEEEeeCCCCCCcCCccccccc
Confidence 99 7888888877 7999999754 6777889999999999999764
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=5.2e-21 Score=170.09 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=150.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++. ++++++.|+.|++||+.+ .+....+.+|...+.+++|+|+++.++++++.|+.|++|
T Consensus 175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 175 ISIPEHNE-LWVSQMQANAVHVFDLKT--------------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp EEEGGGTE-EEEEEGGGTEEEEEETTT--------------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEcCCCE-EEEEECCCCEEEEEECCC--------------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 35788886 899999999999999976 356667778889999999999999565676789999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------------cceeeeecccc
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------------NEEYKIWKKNT 148 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------d~~v~~w~~~~ 148 (384)
|+.+++. +..+. . ...+.+++|+|+++.++ ++.+++||..+
T Consensus 240 d~~~~~~-------------~~~~~-----------~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 240 DRKTKLE-------------IRKTD-----------K---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp ETTTTEE-------------EEECC-----------C---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred ECCCCcE-------------EEEec-----------C---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 9976411 11111 1 12367899999997765 24788999876
Q ss_pred ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc-cccCcCCCCCC
Q psy4577 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS-NYDTDKGDFGG 227 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~d~~~~~~~~ 227 (384)
.......... .....+.|.|+ +..+.+. ..+.....|..
T Consensus 293 ~~~~~~~~~~---~~~~~~~~~~~-------------------------------------g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 293 EKLIDTIGPP---GNKRHIVSGNT-------------------------------------ENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp TEEEEEEEEE---ECEEEEEECSS-------------------------------------TTEEEEEETTTTEEEEEET
T ss_pred CcEEeeccCC---CCcceEEECCC-------------------------------------CCEEEEEecCCCEEEEEEC
Confidence 5443322111 01222333332 2211111 12222222111
Q ss_pred ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeC---------------CCcEEEEecCCCCCCCCCCCCccceee
Q psy4577 228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP---------------SSDVLVFDYTKHPSKPDPNGECHPDLR 292 (384)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 292 (384)
. .+. ......+...+.+++|+|+++ ++++++. ||.|++||+. ++. .+..
T Consensus 333 ~---~~~--~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~--------~~~--~~~~ 396 (433)
T 3bws_A 333 K---EKK--VQKSIPVFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT--------TDT--VKEF 396 (433)
T ss_dssp T---TTE--EEEEEECSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT--------TTE--EEEE
T ss_pred C---CCc--EEEEecCCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECC--------CCc--EEEE
Confidence 0 111 223335778899999999996 6666655 5799999985 332 3445
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEeeC-CCcEEEEecCC
Q psy4577 293 LRGHQKEGYGLSWNPSLNGYLLSASD-DHTICLWDINA 329 (384)
Q Consensus 293 ~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg~i~iwd~~~ 329 (384)
+.. ...+.+++|+|+| .+|++++. |++|++|++..
T Consensus 397 ~~~-~~~~~~~~~s~dg-~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 WEA-GNQPTGLDVSPDN-RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEC-SSSEEEEEECTTS-CEEEEEETTTTEEEEEEETT
T ss_pred ecC-CCCCceEEEcCCC-CEEEEEECCCCeEEEEEecC
Confidence 554 4578999999998 68877764 99999999864
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.1e-20 Score=158.86 Aligned_cols=255 Identities=13% Similarity=0.105 Sum_probs=161.3
Q ss_pred eeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc-CCCccchh
Q psy4577 14 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC-VEPFDDAV 92 (384)
Q Consensus 14 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~ 92 (384)
++.|++|++||+.+ .+ ...+..|...|.+++|+|+++ +|++++ ++.|++||+.+ ++..
T Consensus 18 ~~~~~~i~~~d~~~--------------~~-~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~---- 76 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT--------------RK-MRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPE---- 76 (297)
T ss_dssp CCCCEEEEEEETTT--------------TE-EEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCE----
T ss_pred CCcceeEEEEeCCC--------------Cc-eeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCce----
Confidence 46789999999976 12 234456888999999999999 666655 88999999977 5211
Q ss_pred heeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccc--cccccceeecccccccc
Q psy4577 93 EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKN--TPFLYDLVMTHALEWPS 164 (384)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~--~~~~~~~~~~~~~~~~~ 164 (384)
.+ ..++ ....+.+++|+|+++.++ ++..++|..+ +..... +... ...
T Consensus 77 ---------~~-----------~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~ 131 (297)
T 2ojh_A 77 ---------KV-----------DTGF-ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKN---LPS 131 (297)
T ss_dssp ---------EC-----------CCTT-CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-CCSS---SSE
T ss_pred ---------Ee-----------cccc-ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-eecC---CCc
Confidence 11 1111 124567899999999887 2456676553 222111 1111 112
Q ss_pred eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577 165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE 244 (384)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (384)
..+.|.|+.. .+.+.... ...+.+..+.. . .+ .......+.
T Consensus 132 ~~~~~spdg~----------~l~~~~~~---~~~~~l~~~~~--------------~----------~~--~~~~~~~~~ 172 (297)
T 2ojh_A 132 YWHGWSPDGK----------SFTYCGIR---DQVFDIYSMDI--------------D----------SG--VETRLTHGE 172 (297)
T ss_dssp EEEEECTTSS----------EEEEEEEE---TTEEEEEEEET--------------T----------TC--CEEECCCSS
T ss_pred cceEECCCCC----------EEEEEECC---CCceEEEEEEC--------------C----------CC--cceEcccCC
Confidence 3344544432 11100000 11112222211 0 01 123344577
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-----
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD----- 319 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D----- 319 (384)
..+.+++|+|+++.+++++..++.++||++.. .......+..|...+.+++|+|++ .+|++++.+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------DGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFD 242 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEET---------TSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCS
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECC---------CCCCcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCc
Confidence 88999999999974444555699999999852 112345677788889999999999 788888876
Q ss_pred ------CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 320 ------HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 320 ------g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
+.|++||+.+++.. .+..+.+|...|.+++|+|+++.++..+..
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVE-----TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCE-----EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCce-----eeeccCCCCcccccceECCCCCEEEEEEec
Confidence 56999999887511 345555788899999999999987766543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=2e-21 Score=171.35 Aligned_cols=260 Identities=12% Similarity=0.141 Sum_probs=167.6
Q ss_pred CCCCCCCceEEEee----CCC----eEEEeec--CCcCcccccCCCCCCCCeeE--EEecccccceEEEEEccC------
Q psy4577 2 QWSPHNETILASSG----TDR----RLHVWDL--SKIGEEQSTEDAEDGPPELL--FIHGGHTAKISDFSWNPN------ 63 (384)
Q Consensus 2 ~fsp~~~~~lat~~----~d~----~i~vwd~--~~~~~~~~~~~~~~~~~~~~--~~~~gh~~~V~~l~~~~~------ 63 (384)
+|++.+..++|+|+ .|| +|+|||+ .+ .+.+ ..+.+|...+..+++++.
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 134 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP--------------GTVLAQNSYKVNKQWLRYAGHTASDEVFEK 134 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST--------------TCEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC--------------CCEEeeeEEEcChhHHHHHHHHHHHHHHHH
Confidence 46778877888886 467 8999999 65 2333 557889888988888752
Q ss_pred --------CCcEEEEEecC------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE
Q psy4577 64 --------EPWVICSVSED------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW 129 (384)
Q Consensus 64 --------~~~~l~s~s~D------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 129 (384)
+. .++.++.+ ++|++||+..... ..+.+| ...+.+++|
T Consensus 135 ~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g~~~-------------------------~~l~~~--~~~v~~~~~ 186 (415)
T 2hqs_A 135 LTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDGYNQ-------------------------FVVHRS--PQPLMSPAW 186 (415)
T ss_dssp HHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTSCSC-------------------------EEEEEE--SSCEEEEEE
T ss_pred HcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCCCCC-------------------------EEEeCC--CCcceeeEE
Confidence 44 34455554 7999999865310 123334 567889999
Q ss_pred ecCceeee----c---ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577 130 LPDVTRVI----N---EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA 202 (384)
Q Consensus 130 ~~~~~~~~----d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 202 (384)
+|+|+.++ + ..+++||+.+.....+ ..+. .....+.|.|++. .+.+.... +....+.+
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~~~~--~~~~~~~~spdg~----------~la~~~~~-~g~~~i~~- 251 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP--RHNGAPAFSPDGS----------KLAFALSK-TGSLNLYV- 251 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCS--SCEEEEEECTTSS----------EEEEEECT-TSSCEEEE-
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-ecCC--CcccCEEEcCCCC----------EEEEEEec-CCCceEEE-
Confidence 99999887 3 3899999977654322 2221 1234455655542 01100000 00011111
Q ss_pred EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeC-CC--cEEEEecCCCCC
Q psy4577 203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP-SS--DVLVFDYTKHPS 279 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~ 279 (384)
+|.. .+. ...+..|...+.+++|+|+|+ .|+.++. ++ .|++||+.
T Consensus 252 ---------------~d~~----------~~~--~~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~---- 299 (415)
T 2hqs_A 252 ---------------MDLA----------SGQ--IRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNIN---- 299 (415)
T ss_dssp ---------------EETT----------TCC--EEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETT----
T ss_pred ---------------EECC----------CCC--EEeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECC----
Confidence 1111 111 234456788899999999996 6666664 55 56666764
Q ss_pred CCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC---CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577 280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD---HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE 356 (384)
Q Consensus 280 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 356 (384)
.+. ...+..|...+.+++|+|+| ++|++++.+ ..|++||+.+++ . ..+..|. .+.+++|+
T Consensus 300 ----~~~---~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~-------~-~~l~~~~-~~~~~~~s 362 (415)
T 2hqs_A 300 ----GGA---PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-------V-QVLSSTF-LDETPSLA 362 (415)
T ss_dssp ----SSC---CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-------E-EECCCSS-SCEEEEEC
T ss_pred ----CCC---EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-------E-EEecCCC-CcCCeEEc
Confidence 222 23455677789999999999 788888765 589999999875 4 3455554 89999999
Q ss_pred cCCCccccccc
Q psy4577 357 RLTKKADPVCT 367 (384)
Q Consensus 357 p~~~~~~~~c~ 367 (384)
|+|+.++..+.
T Consensus 363 pdg~~l~~~s~ 373 (415)
T 2hqs_A 363 PNGTMVIYSSS 373 (415)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEc
Confidence 99997766543
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=1.5e-20 Score=170.80 Aligned_cols=278 Identities=9% Similarity=0.043 Sum_probs=170.1
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
.|+|++. ++++++.|++|.+||..+ .+++.++. +|. +.+++|+|+|+ +|++++.|++|++|
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t--------------~~~~~~i~~g~~--~~~v~~spdg~-~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDS--------------KKIVKVIDTGYA--VHISRMSASGR-YLLVIGRDARIDMI 205 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTT--------------CCEEEEEECSTT--EEEEEECTTSC-EEEEEETTSEEEEE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCC--------------ceEEEEEecCcc--cceEEECCCCC-EEEEECCCCeEEEE
Confidence 4788875 899999999999999986 35666666 443 89999999999 77899999999999
Q ss_pred Ec--ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec----Cceeee-----cceeeeeccccc
Q psy4577 81 SV--VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP----DVTRVI-----NEEYKIWKKNTP 149 (384)
Q Consensus 81 d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~-----d~~v~~w~~~~~ 149 (384)
|+ .+++. +. .+. ....+..++|+| +|+.++ +++|.+||..+.
T Consensus 206 D~~~~t~~~-------------~~-----------~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 206 DLWAKEPTK-------------VA-----------EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp ETTSSSCEE-------------EE-----------EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred ECcCCCCcE-------------EE-----------EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 99 44311 11 111 022356899999 998876 789999998765
Q ss_pred cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCCc
Q psy4577 150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGGF 228 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~ 228 (384)
.....+......... ..+.+.. .+..+.+++++..+.+.. .+.....+..
T Consensus 259 ~~~~~i~~~g~~~~~--~~~~~~~--------------------------~v~~i~~s~~~~~~~vs~~~~g~i~vvd~- 309 (543)
T 1nir_A 259 EPKQIVSTRGMTVDT--QTYHPEP--------------------------RVAAIIASHEHPEFIVNVKETGKVLLVNY- 309 (543)
T ss_dssp CEEEEEECCEECSSS--CCEESCC--------------------------CEEEEEECSSSSEEEEEETTTTEEEEEEC-
T ss_pred ccceeecccCcccCc--cccccCC--------------------------ceEEEEECCCCCEEEEEECCCCeEEEEEe-
Confidence 554433321110000 0000000 111122222211111110 0111100000
Q ss_pred cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEE
Q psy4577 229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLS 304 (384)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~ 304 (384)
............+...+..++|+|+++.+++++..+++|.+||.. ++.. +..+.. |.+....+
T Consensus 310 --~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------tg~l--~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 310 --KDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------DRRL--SALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp --TTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT--------TTEE--EEEEECSSSBCCTTCEEE-
T ss_pred --cCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC--------CCeE--EEeeccCCCCCCCCCccc-
Confidence 000111122334666788999999997566677778999999986 4433 333432 54433333
Q ss_pred eCCCCCCeEEEee-CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 305 WNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 305 ~s~~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
++|++..+++|++ .|++|.+||+.+..........++++.+|...+..++|||+++.+....
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 4777325788876 6899999999983211112238999999998899999999998765543
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.5e-21 Score=172.60 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=85.5
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
+|...|.+++|+|++.++|++++.||+|++||++ .+ .......+|...|++++|+|+| .+|++|+.||+
T Consensus 147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~--------~~--~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~ 215 (434)
T 2oit_A 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT--------ET--VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGT 215 (434)
T ss_dssp SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES--------SS--EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSC
T ss_pred CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC--------CC--cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCc
Confidence 5788999999999844699999999999999996 33 2344566788999999999998 79999999999
Q ss_pred EEEEecCCCCCCCccccceeeeec-------cCCcEeEEEEecCCCcccccc
Q psy4577 322 ICLWDINATPKENRVIDAKTIFTG-------HTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~~~~c 366 (384)
|++||++ ++ ....+.. |...|.+++|++++..+++..
T Consensus 216 v~iwd~~-~~-------~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 216 VVQYLPT-LQ-------EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EEEECTT-CC-------EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred EEEEccC-Cc-------ccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 9999998 44 4444433 334899999999887765443
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=7e-19 Score=159.83 Aligned_cols=280 Identities=11% Similarity=0.059 Sum_probs=171.5
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeec--CCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc----CCCcEEEEEe-c
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWVICSVS-E 73 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~----~~~~~l~s~s-~ 73 (384)
++|+|+++ +|++++.|++|++||+ .+ .+++..+.. ...+..++|+| +|+ +|++++ .
T Consensus 184 v~~spdg~-~l~v~~~d~~V~v~D~~~~t--------------~~~~~~i~~-g~~p~~va~sp~~~~dg~-~l~v~~~~ 246 (543)
T 1nir_A 184 SRMSASGR-YLLVIGRDARIDMIDLWAKE--------------PTKVAEIKI-GIEARSVESSKFKGYEDR-YTIAGAYW 246 (543)
T ss_dssp EEECTTSC-EEEEEETTSEEEEEETTSSS--------------CEEEEEEEC-CSEEEEEEECCSTTCTTT-EEEEEEEE
T ss_pred EEECCCCC-EEEEECCCCeEEEEECcCCC--------------CcEEEEEec-CCCcceEEeCCCcCCCCC-EEEEEEcc
Confidence 46999998 7999999999999999 44 355666664 34689999999 999 555665 5
Q ss_pred CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc
Q psy4577 74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT 148 (384)
Q Consensus 74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~ 148 (384)
+++|.+||..+.+. ++.+....... .....| .+..+.++.++|++..++ ++++.+||...
T Consensus 247 ~~~v~v~D~~t~~~-------------~~~i~~~g~~~-~~~~~~-~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 247 PPQFAIMDGETLEP-------------KQIVSTRGMTV-DTQTYH-PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp SSEEEEEETTTCCE-------------EEEEECCEECS-SSCCEE-SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CCeEEEEecccccc-------------ceeecccCccc-Cccccc-cCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 89999999877522 12211111000 000001 123577899999887655 78999999866
Q ss_pred ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF 228 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 228 (384)
...... ...........+.|.|++. .+...... .+.+.+ +|..
T Consensus 312 ~~~l~~-~~i~~~~~~~~~~~spdg~----------~l~va~~~---~~~v~v----------------~D~~------- 354 (543)
T 1nir_A 312 IDNLTV-TSIGAAPFLHDGGWDSSHR----------YFMTAANN---SNKVAV----------------IDSK------- 354 (543)
T ss_dssp SSSCEE-EEEECCSSCCCEEECTTSC----------EEEEEEGG---GTEEEE----------------EETT-------
T ss_pred CCccee-EEeccCcCccCceECCCCC----------EEEEEecC---CCeEEE----------------EECC-------
Confidence 433221 0000000111233333321 01111100 111111 1211
Q ss_pred cCCCCceeEEEEe----ecCCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577 229 GSVSGKIEIEIKI----NHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL 303 (384)
Q Consensus 229 ~~~~~~~~~~~~~----~~~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 303 (384)
.+++ ..... .|.+....+ ++|++..+++++. .|++|.+||+...... ....+.+.++.+|...+..+
T Consensus 355 ---tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 355 ---DRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp ---TTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred ---CCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEE
Confidence 1222 11111 255444443 4787445888876 6899999998631100 12245677899998889999
Q ss_pred EeCCCCCCeEEEee-------CCCcEEEEecCCCCCCCccccce-eee--------eccCCcEeEEEEecCCCccccc
Q psy4577 304 SWNPSLNGYLLSAS-------DDHTICLWDINATPKENRVIDAK-TIF--------TGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 304 ~~s~~~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~-~~~--------~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
+++|++ ++|++++ .+++|.+||+.+.+ .. ..+ ..+...+..++|+|+|+.+...
T Consensus 427 ~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 427 KTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD-------AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp ECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT-------SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred EcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC-------CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 999999 7999887 37899999999987 33 332 4567889999999999987643
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=6.9e-20 Score=174.00 Aligned_cols=103 Identities=8% Similarity=0.040 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE-EeCCCCCCeE-EEeeCCC--c
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL-SWNPSLNGYL-LSASDDH--T 321 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~s~~~~~~l-~s~s~Dg--~ 321 (384)
.+..++|+|+|+ ++++++.||.++||.+.. .+. ...+..|...+..+ .|+|++ +.| ++++.|+ .
T Consensus 338 ~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~-------~~~---~~~l~~~~~~v~~~~~~s~dg-~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 338 LHNSLRFLDDGS-ILWSSERTGFQHLYRIDS-------KGK---AAALTHGNWSVDELLAVDEKA-GLAYFRAGIESARE 405 (741)
T ss_dssp CCSCCEECTTSC-EEEEECTTSSCEEEEECS-------SSC---EEESCCSSSCEEEEEEEETTT-TEEEEEECSSCTTC
T ss_pred cCCceEECCCCe-EEEEecCCCccEEEEEcC-------CCC---eeeeeecceEEEeEeEEeCCC-CEEEEEEeCCCCce
Confidence 456899999997 899999999999998742 222 45677788888887 599998 555 5566666 8
Q ss_pred EEEEecCC-CCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 322 ICLWDINA-TPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 322 i~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
++||++.. +. ....+.. ...+..++|+||++.++..+..
T Consensus 406 ~~l~~~~~~g~-------~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 406 SQIYAVPLQGG-------QPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp BEEEEEETTCC-------CCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred EEEEEEEcCCC-------Ceeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 99999875 33 4555554 5668899999999987766543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.1e-19 Score=156.14 Aligned_cols=273 Identities=11% Similarity=0.076 Sum_probs=155.2
Q ss_pred CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC-CeEEEEEcc--
Q psy4577 7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED-NIMQILSVV-- 83 (384)
Q Consensus 7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-~~i~vwd~~-- 83 (384)
++.++++++.|+.|++||+...+ ..+.+.. ..|...+.+++|+|+++ .|++++.+ +.|++|++.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~ 70 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEG-----------ALTLTQV-VDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTS-----------CEEEEEE-EECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred eEEEEEeCCCCCeEEEEEECCCC-----------cEEEeee-EecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCC
Confidence 33456666889999999996321 1122332 34677899999999999 55566665 999999997
Q ss_pred cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecc
Q psy4577 84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTH 158 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~ 158 (384)
+++ ... + ..+.. ...+..++|+|+++.++ ++.+.+|+.............
T Consensus 71 ~~~--------------~~~-------~-~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 125 (343)
T 1ri6_A 71 DGA--------------LTF-------A-AESAL---PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 125 (343)
T ss_dssp TCC--------------EEE-------E-EEEEC---SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE
T ss_pred CCc--------------eee-------c-ccccc---CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc
Confidence 321 000 0 00111 22567899999998775 678999998422111111111
Q ss_pred cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE-
Q psy4577 159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI- 237 (384)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~- 237 (384)
........+.|.|+.. .+.+.... .+.+.++.+. . .+....
T Consensus 126 ~~~~~~~~~~~s~dg~----------~l~~~~~~---~~~v~~~d~~----------------~---------~~~~~~~ 167 (343)
T 1ri6_A 126 EGLDGCHSANISPDNR----------TLWVPALK---QDRICLFTVS----------------D---------DGHLVAQ 167 (343)
T ss_dssp CCCTTBCCCEECTTSS----------EEEEEEGG---GTEEEEEEEC----------------T---------TSCEEEE
T ss_pred cCCCCceEEEECCCCC----------EEEEecCC---CCEEEEEEec----------------C---------CCceeee
Confidence 1111122334444321 11111100 1122222221 0 011111
Q ss_pred ---EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec----CC--CCceEEEEeCCC
Q psy4577 238 ---EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR----GH--QKEGYGLSWNPS 308 (384)
Q Consensus 238 ---~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h--~~~i~~~~~s~~ 308 (384)
.........+..++|+|+++.+++++..++.|++|++... .+.......+. ++ ...+..++|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcEEEEeeccccCccccccCCccceEECCC
Confidence 1122234578899999999755666668999999998521 12222122221 11 235778999999
Q ss_pred CCCeEE-EeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 309 LNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 309 ~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
+ ++|+ ++..|+.|++||+...... ...+..+..+.. +.+++|+|+++.+...+
T Consensus 242 g-~~l~v~~~~~~~i~v~d~~~~~~~---~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 242 G-RHLYACDRTASLITVFSVSEDGSV---LSKEGFQPTETQ-PRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp S-SEEEEEETTTTEEEEEEECTTSCC---EEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred C-CEEEEEecCCCEEEEEEEcCCCCc---eEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence 8 5555 6668999999999842110 114444544444 88999999999776665
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.3e-19 Score=153.59 Aligned_cols=270 Identities=7% Similarity=-0.011 Sum_probs=161.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.|.+++..++++++.++.|.+||..+ .++...+..+...+ +++|+|+++.+++++..++.|.+||
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT--------------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT--------------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc--------------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46777776789999999999999986 24444445555567 9999999995665555689999999
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c-c--eeeeeccccccccce
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N-E--EYKIWKKNTPFLYDL 154 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d-~--~v~~w~~~~~~~~~~ 154 (384)
+.+++.. .. .+..+ ..+..+++|+|+++.++ + + .+.+|+..+......
T Consensus 69 ~~~~~~~------------~~-----------~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 69 TQLEPPK------------VV-----------AIQEG--QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp CSSSSCE------------EE-----------EEEEC--SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred CCCCcee------------EE-----------ecccC--CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 9875210 00 11111 22333499999999876 2 3 899999877655333
Q ss_pred eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe-EEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577 155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH-LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233 (384)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 233 (384)
+.... ....+.|.|++. .+.+.... .+. +.++.+. . .+
T Consensus 124 ~~~~~---~~~~~~~spdg~----------~l~~~~~~---~~~~i~~~~~~--------------~-----------~g 162 (331)
T 3u4y_A 124 IPIPY---DAVGIAISPNGN----------GLILIDRS---SANTVRRFKID--------------A-----------DG 162 (331)
T ss_dssp EECCT---TEEEEEECTTSS----------CEEEEEET---TTTEEEEEEEC--------------T-----------TC
T ss_pred EECCC---CccceEECCCCC----------EEEEEecC---CCceEEEEEEC--------------C-----------CC
Confidence 22211 123344544432 01111000 111 2222222 0 00
Q ss_pred ce-eE-EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCC
Q psy4577 234 KI-EI-EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLN 310 (384)
Q Consensus 234 ~~-~~-~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~ 310 (384)
.. .. ............++|+|+++.+++++..++.|++||+. .+.. ..+..+.. ...+..++|+|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~--------~~~~~~~~~~~~~-~~~~~~~~~spdg- 232 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ--------NPENITLLNAVGT-NNLPGTIVVSRDG- 232 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS--------STTSCEEEEEEEC-SSCCCCEEECTTS-
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC--------CCcccceeeeccC-CCCCceEEECCCC-
Confidence 11 00 12223455688999999997567777789999999986 3332 11334443 3567899999999
Q ss_pred CeE-EEeeCCCcEEEEecCCCCCCCccccceeeeecc----C---CcEeEEEEecCCCccccccc
Q psy4577 311 GYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGH----T---AVVELELIERLTKKADPVCT 367 (384)
Q Consensus 311 ~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h----~---~~v~~~~~sp~~~~~~~~c~ 367 (384)
++| ++...++.|.+||+.+++.. .+..+..+ . .....++|+|+++.+...+.
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLS-----FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEE-----EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred CEEEEEEcCCCEEEEEECCCCcee-----eecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence 554 55556889999999987510 13322221 2 22356899999998765543
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2.6e-19 Score=169.57 Aligned_cols=315 Identities=10% Similarity=0.079 Sum_probs=175.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccCCCcEEEEEecC---
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPNEPWVICSVSED--- 74 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~~l~s~s~D--- 74 (384)
++|+|||+ ++++ +.||+|++||+.+. +....+.+|.. .|.+++|||||+ .|++++.+
T Consensus 22 ~~~spdg~-~~~~-~~dg~i~~~d~~~g--------------~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~ 84 (723)
T 1xfd_A 22 AKWISDTE-FIYR-EQKGTVRLWNVETN--------------TSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPI 84 (723)
T ss_dssp CCBSSSSC-BCCC-CSSSCEEEBCGGGC--------------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCC
T ss_pred cEEcCCCc-EEEE-eCCCCEEEEECCCC--------------cEEEEeccccccccccceEEECCCCC-EEEEEecCccc
Confidence 57999998 6776 68999999999862 33444566654 499999999999 66777664
Q ss_pred ------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeec
Q psy4577 75 ------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWK 145 (384)
Q Consensus 75 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~ 145 (384)
+.+.+||+.+++. +... ...+| ...+..++|+|+|+.++ ++.+++|+
T Consensus 85 ~~~~~~~~i~~~d~~~~~~--------------~~l~--------~~~~~--~~~~~~~~~SPdG~~la~~~~~~i~~~~ 140 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDP--------------QSLD--------PPEVS--NAKLQYAGWGPKGQQLIFIFENNIYYCA 140 (723)
T ss_dssp SSSCCCSEEEEEESSSCCC--------------EECC--------CTTCC--SCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred eeecceeeEEEEECCCCce--------------Eecc--------CCccc--cccccccEECCCCCEEEEEECCeEEEEE
Confidence 7888999987521 0000 00011 23366788999998877 77899998
Q ss_pred cccccccceeecccccc----------------cceeeeeccCCCCCC-----CCc------------------------
Q psy4577 146 KNTPFLYDLVMTHALEW----------------PSLTAQWLPDVTRPE-----GKD------------------------ 180 (384)
Q Consensus 146 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~------------------------ 180 (384)
..+.....+........ ....+.|.|++.... ...
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 87655443322211110 113566777764110 000
Q ss_pred ----c-ceeEEEEeeeccC------CC-----CeEEEEEeecCCCCcccccccccCcCCCCCCccC-CCCceeEEEEeec
Q psy4577 181 ----Y-SIHRLILGTHTSD------EQ-----NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS-VSGKIEIEIKINH 243 (384)
Q Consensus 181 ----~-~~~~~~~~~~~~~------~~-----~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 243 (384)
. .....+....... .. ....+..+.+++++..+...............++ ..+.........+
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 300 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence 0 0011111111100 00 1345677788887765433222111000000111 1223222222234
Q ss_pred CCceE----EEEEcCCCCcEEEE-EeCCC------cEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCC
Q psy4577 244 EGEVN----RARYMPQNPCVIAT-KTPSS------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNG 311 (384)
Q Consensus 244 ~~~v~----~v~~~p~~~~~l~s-~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~ 311 (384)
.+.+. .++|+|+|+.+++. +..++ .|++||... .+.......+..+...+.. ++|+||| +
T Consensus 301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~~~~~l~~~~~~~~~~~~~spdg-~ 372 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP-------NSSNDNIQSITSGDWDVTKILAYDEKG-N 372 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC-------CSSSCCCCBSCCSSSCEEEEEEEETTT-T
T ss_pred CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC-------CCCccceeEeecCCeEEEeeeEEcCCC-C
Confidence 44443 78999999755444 55677 466666211 2220002233433344544 6999999 6
Q ss_pred eEEEeeCC---CcEEEEecCCCCCCCccccceeeeec---cCCcEeEEEEecCCCccccccccc
Q psy4577 312 YLLSASDD---HTICLWDINATPKENRVIDAKTIFTG---HTAVVELELIERLTKKADPVCTLE 369 (384)
Q Consensus 312 ~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~~c~~~ 369 (384)
.|+..+.+ +.++||++...... ....+.. |...+..++|+|+++.++..|...
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANTVGNF-----NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECSSTTC-----CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred EEEEEEcCCCCcceEEEEEeCCCCC-----CcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 77655554 89999999754210 2223333 677799999999999877665543
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=4.7e-19 Score=152.71 Aligned_cols=243 Identities=7% Similarity=0.057 Sum_probs=150.5
Q ss_pred CCCCCCCCceEEEeeC--CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe-cCCeE
Q psy4577 1 VQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNIM 77 (384)
Q Consensus 1 v~fsp~~~~~lat~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s-~D~~i 77 (384)
++|+|+++ +++++.. ++.|.+||+.... .+.+..+..|...+..++|+|+|+ .|++++ .+++|
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------------~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v 110 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------------AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTA 110 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTE------------EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCc------------EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEE
Confidence 46899997 6666643 6899999996411 234555556777899999999999 555666 78999
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccC--CcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccc-cc
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT-PF 150 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~-~~ 150 (384)
++|++...... ..+...... .+.. ......+.+++|+|+|+.++ ++.+.+|++.. ..
T Consensus 111 ~v~~~~~~g~~----------~~~~~~~~~~~~p~~------~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 111 EVMKIAADGAL----------TLTDTVQHSGHGPRP------EQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEEECTTSCE----------EEEEEEECCCCCSST------TCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEEeCCCCCe----------eecceeecCCCCCCc------cccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 99999632110 000000000 0000 00122467899999998333 55677776541 11
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
+. .+..+
T Consensus 175 ~~-----------------------------------------------~~~~~-------------------------- 181 (347)
T 3hfq_A 175 LS-----------------------------------------------EQSVL-------------------------- 181 (347)
T ss_dssp EE-----------------------------------------------EEEEE--------------------------
T ss_pred EE-----------------------------------------------EeeeE--------------------------
Confidence 10 00000
Q ss_pred CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC------CceEEEE
Q psy4577 231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ------KEGYGLS 304 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~------~~i~~~~ 304 (384)
.......+..++|+|+|+.+++++..++.|++|++... .+....+..+.... ..+..++
T Consensus 182 ---------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 182 ---------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ------TGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ---------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT------TTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ---------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCceEEeeeeeecCCCCCCCCcceeEE
Confidence 00111245679999999756666778899999998621 12222222332222 3588999
Q ss_pred eCCCCCCeE-EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 305 WNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 305 ~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
|+|+| ++| ++...++.|.+|++.... .+..+..+..+...+.+++|+|+++.+...+
T Consensus 247 ~spdG-~~l~v~~~~~~~v~v~~~~~~g----~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 247 LSHDG-HFLYVSNRGYNTLAVFAVTADG----HLTLIQQISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp ECTTS-CEEEEEEETTTEEEEEEECGGG----CEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred ECCCC-CEEEEEeCCCCEEEEEEECCCC----cEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence 99999 655 667779999999997321 1115556666667789999999999766554
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=2.8e-19 Score=175.60 Aligned_cols=317 Identities=9% Similarity=-0.002 Sum_probs=188.6
Q ss_pred CCCCCCCCceEEEeeCC------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccce-------EEEEEccCCCcE
Q psy4577 1 VQWSPHNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI-------SDFSWNPNEPWV 67 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-------~~l~~~~~~~~~ 67 (384)
++|||||+ .||.++.+ ..|++||+.. .....+.+|...+ .+++|+|||+ +
T Consensus 58 ~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~---------------g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-l 120 (1045)
T 1k32_A 58 ARFFPDGR-KIAIRVMRGSSLNTADLYFYNGEN---------------GEIKRITYFSGKSTGRRMFTDVAGFDPDGN-L 120 (1045)
T ss_dssp EEECTTSS-EEEEEEEESTTCCEEEEEEEETTT---------------TEEEECCCCCEEEETTEECSEEEEECTTCC-E
T ss_pred eEECCCCC-EEEEEEeeccCCCCCeEEEEECCC---------------CCeEEcccCCCcccccccccccccCCCCCE-E
Confidence 37999998 67877543 3799999875 2245667888888 9999999999 8
Q ss_pred EEEEecC------CeEEEEEcccCCCc--cchh-----------------------------------------------
Q psy4577 68 ICSVSED------NIMQILSVVCVEPF--DDAV----------------------------------------------- 92 (384)
Q Consensus 68 l~s~s~D------~~i~vwd~~~~~~~--~~~~----------------------------------------------- 92 (384)
+++++.+ ..|.+|++.+++.. ....
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 8888755 35777777654210 0000
Q ss_pred ------------heee-----eeeeEEEeccC--CcccccceeeeeeccCeeEEEEecCceeee---cceeeeecccccc
Q psy4577 93 ------------EERV-----INEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPF 150 (384)
Q Consensus 93 ------------~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~ 150 (384)
.... .++...+|... +... ..+..| ..+...+|+|+|+.++ ++.+.+|+.....
T Consensus 201 ~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~---~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 201 DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTSF---TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 276 (1045)
T ss_dssp CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCCC---CSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcc-eEecCC---CCcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence 0000 01122334321 1111 112222 2355779999998776 8999999984433
Q ss_pred ccceeeccc---------ccccceeeeec-cCCCCCCCC-ccceeEEEEeeecc-----CCCCeEEEEEeecCCCCcccc
Q psy4577 151 LYDLVMTHA---------LEWPSLTAQWL-PDVTRPEGK-DYSIHRLILGTHTS-----DEQNHLLIASVQLPNEDAQFD 214 (384)
Q Consensus 151 ~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~ 214 (384)
+. .+.... .......+.|. |++...... ...+ ........ .......+..+.++ ++..+.
T Consensus 277 l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 277 IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQA--FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEE--EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEE
T ss_pred ee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEE--EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEE
Confidence 32 111110 00123456677 665311000 0000 00000000 01111245666666 554444
Q ss_pred cccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577 215 ASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR 294 (384)
Q Consensus 215 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 294 (384)
....+. ..+.. ....... ......|...+..++|+|+|+ +|++++.++.|++||+. .+.. ...+.
T Consensus 353 ~~s~~~--~l~~~-~d~~~~~-~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~--------tg~~--~~~~~ 417 (1045)
T 1k32_A 353 HGTREG--DFLGI-YDYRTGK-AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLE--------TGKP--TVIER 417 (1045)
T ss_dssp EEETTE--EEEEE-EETTTCC-EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETT--------TCCE--EEEEE
T ss_pred EEECCC--ceEEE-EECCCCC-ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECC--------CCce--EEecc
Confidence 322211 11100 0111111 222336778899999999996 89999999999999986 3433 33455
Q ss_pred CCCCceEEEEeCCCCCCeEEEeeCCC----------cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577 295 GHQKEGYGLSWNPSLNGYLLSASDDH----------TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP 364 (384)
Q Consensus 295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg----------~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 364 (384)
+|...+.+++||||| ++|++++.++ .|++||+.++ .+..+..|...+..++|+|+|+.+..
T Consensus 418 ~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 418 SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------KIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTT--------EEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCC--------cEEEeeCCCcccCCceEcCCCCEEEE
Confidence 788899999999999 7888887754 9999999876 44566778888999999999997665
Q ss_pred cc
Q psy4577 365 VC 366 (384)
Q Consensus 365 ~c 366 (384)
..
T Consensus 489 ~s 490 (1045)
T 1k32_A 489 LS 490 (1045)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=2.1e-18 Score=148.23 Aligned_cols=274 Identities=12% Similarity=0.063 Sum_probs=152.4
Q ss_pred CCCCCCCCceEEEeeCC-CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 1 VQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
++|+|+++ +|++++.+ +.|++|++.... ...+.+..+..+. .+.+++|+|+++.+++++..++.|.+
T Consensus 43 ~~~spdg~-~l~~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 43 MVVSPDKR-YLYVGVRPEFRVLAYRIAPDD----------GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp EEECTTSS-EEEEEETTTTEEEEEEECTTT----------CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCC-EEEEeecCCCeEEEEEecCCC----------CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 46999998 56666665 999999997211 1123444444444 78999999999955555556899999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc-ccccc
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT-PFLYD 153 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~-~~~~~ 153 (384)
||+..+... ..... +. ....+.+++|+|+++.++ ++.+.+|++.. .....
T Consensus 111 ~d~~~~~~~----------~~~~~-----------~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 111 TRLEDGLPV----------GVVDV-----------VE---GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EEEETTEEE----------EEEEE-----------EC---CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EECCCCccc----------ccccc-----------cc---CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 999522000 00111 11 123467899999998665 68899999875 33221
Q ss_pred ee---ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 154 LV---MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 154 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
.. ...........+.|.|+.. .+.+... ..+.+.+..+. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~----------~l~~~~~---~~~~i~~~~~~--------------~~--------- 210 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQ----------YAYCVNE---LNSSVDVWELK--------------DP--------- 210 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSS----------EEEEEET---TTTEEEEEESS--------------CT---------
T ss_pred ecccccccCCCCCcceEEECCCCC----------EEEEEeC---CCCEEEEEEec--------------CC---------
Confidence 11 0000001112233333321 0111000 01112222211 00
Q ss_pred CCCceeEE-EEe------ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577 231 VSGKIEIE-IKI------NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL 303 (384)
Q Consensus 231 ~~~~~~~~-~~~------~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 303 (384)
.+.+... ... .....+..++|+|+++.+++++..++.|++||+... .+....+..+..+.. +.++
T Consensus 211 -~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~-~~~~ 282 (343)
T 1ri6_A 211 -HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVLSKEGFQPTETQ-PRGF 282 (343)
T ss_dssp -TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCEEEEEEEECSSS-CCCE
T ss_pred -CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCceEEeeeecCCCc-cceE
Confidence 0111111 111 112356789999999756667778999999999521 122334444554544 8899
Q ss_pred EeCCCCCCeEEEee-CCCcEEEEecC--CCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577 304 SWNPSLNGYLLSAS-DDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 304 ~~s~~~~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
+|+|+| ++|++++ .|+.|.+|++. +++ +..+..+... ....+++|.|+.+.
T Consensus 283 ~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~-----~~~~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 283 NVDHSG-KYLIAAGQKSHHISVYEIVGEQGL-----LHEKGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp EECTTS-SEEEEECTTTCEEEEEEEETTTTE-----EEEEEEEECS-SSCCEEEEEEEC--
T ss_pred EECCCC-CEEEEecCCCCeEEEEEEcCCCce-----eeEccccccC-CCCeeEEEEcccCC
Confidence 999998 6666666 68999999665 432 1134444332 34667888886653
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=3.8e-19 Score=153.52 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=161.3
Q ss_pred CCCCCCCCceEEEeeC-------CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec
Q psy4577 1 VQWSPHNETILASSGT-------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 73 (384)
Q Consensus 1 v~fsp~~~~~lat~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~ 73 (384)
++|+|+++. |++++. ++.|.+||..+ .+....+.. ...+.+++|+|+++.++++...
T Consensus 46 ~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 46 MAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVT--------------LEVTQAIHN-DLKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp EEEETTTTE-EEEEECCCTTTEESEEEEEECTTT--------------CCEEEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred eEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCC--------------CeEEEEEec-CCCcceEEECCCCCEEEEEecC
Confidence 468999974 555543 67899999976 244444433 2357889999999967777777
Q ss_pred CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccc
Q psy4577 74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKN 147 (384)
Q Consensus 74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~ 147 (384)
++.|.+||+.+++.. ..+....... ........+.+++|+|+++.++ ++.+.+||..
T Consensus 110 ~~~v~~~d~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVK-------------GRLVLDDRKR----TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp TTEEEEEETTTCCEE-------------EEEESCCCCC----CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred CCEEEEEeCCCCeeE-------------EEEecCCCcc----ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 899999999875221 1111111000 0000001246799999998765 5678999987
Q ss_pred cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577 148 TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG 227 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~ 227 (384)
+......+..... ....+.+.++.. .+.+... .+.+.+ +|..
T Consensus 173 ~~~~~~~~~~~~~--~~~~~~~s~dg~----------~l~~~~~----~~~i~~----------------~d~~------ 214 (353)
T 3vgz_A 173 NIKLKTAIQNTGK--MSTGLALDSEGK----------RLYTTNA----DGELIT----------------IDTA------ 214 (353)
T ss_dssp TTEEEEEECCCCT--TCCCCEEETTTT----------EEEEECT----TSEEEE----------------EETT------
T ss_pred CCceEEEecCCCC--ccceEEECCCCC----------EEEEEcC----CCeEEE----------------EECC------
Confidence 6554333221111 012233333321 0111110 111111 1111
Q ss_pred ccCCCCceeEEEEe---ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577 228 FGSVSGKIEIEIKI---NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS 304 (384)
Q Consensus 228 ~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 304 (384)
.+........ ++...+.+++|+|+++.++++...++.|.+||.. .+.. +..+..+. ...++
T Consensus 215 ----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~--------~~~~--~~~~~~~~--~~~~~ 278 (353)
T 3vgz_A 215 ----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR--------NGNI--LAKVAAPE--SLAVL 278 (353)
T ss_dssp ----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT--------TCCE--EEEEECSS--CCCEE
T ss_pred ----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC--------CCcE--EEEEEcCC--CceEE
Confidence 1111111111 2455688899999997566666667999999986 3332 22333322 25799
Q ss_pred eCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577 305 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
|+|++..++++...++.|.+||..+++ .+..+... ..+.+++|+|+++.+...+..
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAKSYK-------VVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTE-------EEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCe-------EEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 999983355566679999999999887 66666543 468999999999976655543
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=2.5e-18 Score=162.39 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=73.1
Q ss_pred eEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCCeEE-EeeCCC--
Q psy4577 247 VNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNGYLL-SASDDH-- 320 (384)
Q Consensus 247 v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~~l~-s~s~Dg-- 320 (384)
+..++|+| +|+ ++++++.|+.++||++.. .+ ..+..+..|...+.. ++|+|++ +.|+ +++.++
T Consensus 312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~-------~~--~~~~~l~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDT-------TG--RLIRQVTKGEWEVTNFAGFDPKG-TRLYFESTEASPL 380 (706)
T ss_dssp CSCCEECTTCSSE-EEEEECTTSSCEEEEEET-------TS--CEEEECCCSSSCEEEEEEECTTS-SEEEEEESSSCTT
T ss_pred cCCceeecCCCCE-EEEEEccCCccEEEEEEC-------CC--CEEEecCCCCeEEEeeeEEcCCC-CEEEEEecCCCCc
Confidence 46789999 995 899999999999998852 12 234566777777877 8999998 5554 455555
Q ss_pred --cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 321 --TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 321 --~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.|+.||+.+++ ...+. |...+.+++|+|+++.++..|.
T Consensus 381 ~~~l~~~d~~~~~--------~~~l~-~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 381 ERHFYCIDIKGGK--------TKDLT-PESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp CBEEEEEETTCCC--------CEESC-CSSSEEEEEECTTSSEEEEEEE
T ss_pred eEEEEEEEcCCCC--------ceecc-CCCceEEEEECCCCCEEEEEec
Confidence 66666776653 22333 6677999999999998776654
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.9e-18 Score=159.46 Aligned_cols=253 Identities=11% Similarity=0.017 Sum_probs=156.8
Q ss_pred CCCCCCCCceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEec---CC
Q psy4577 1 VQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSE---DN 75 (384)
Q Consensus 1 v~fsp~~~~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~---D~ 75 (384)
++|+|||+ .||.++. ||+++||++.. .+... +..|. ..|.+++|+|+ + ++++++. +.
T Consensus 27 ~~~~~DG~-~la~~s~~~g~~~lw~~~~--------------g~~~~-lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~ 88 (582)
T 3o4h_A 27 LQGVVDGD-KLLVVGFSEGSVNAYLYDG--------------GETVK-LNREPINSVLDPHYGVG-R-VILVRDVSKGAE 88 (582)
T ss_dssp EEEEETTT-EEEEEEEETTEEEEEEEET--------------TEEEE-CCSSCCSEECEECTTCS-E-EEEEEECSTTSC
T ss_pred eecCCCCC-eEEEEEccCCceeEEEEcC--------------CCcEe-eecccccccccccCCCC-e-EEEEeccCCCCc
Confidence 46899998 6888776 99999999854 23333 33444 68999999999 5 7777775 56
Q ss_pred eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccc
Q psy4577 76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPF 150 (384)
Q Consensus 76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~ 150 (384)
..++|.+... +...... ... .......+|+|+++.++ ++.+.+|++.+..
T Consensus 89 ~~~l~~~~~~-------------------~~g~~~~--l~~----~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 89 QHALFKVNTS-------------------RPGEEQR--LEA----VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp CEEEEEEETT-------------------STTCCEE--CTT----SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred ceEEEEEecc-------------------CCCcccc--ccC----CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 6777766430 0000000 000 11223568888886543 4555699887665
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 230 (384)
...+.... .....|.|++. .+............+.+ +|...
T Consensus 144 ~~~l~~~~-----~~~~~~spDG~----------~la~~~~~~~~~~~i~~----------------~d~~~-------- 184 (582)
T 3o4h_A 144 LRELARLP-----GFGFVSDIRGD----------LIAGLGFFGGGRVSLFT----------------SNLSS-------- 184 (582)
T ss_dssp EEEEEEES-----SCEEEEEEETT----------EEEEEEEEETTEEEEEE----------------EETTT--------
T ss_pred EEEeecCC-----CceEEECCCCC----------EEEEEEEcCCCCeEEEE----------------EcCCC--------
Confidence 43332211 13455555543 11111111000011111 11111
Q ss_pred CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE----
Q psy4577 231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS---- 304 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---- 304 (384)
+. ...+..|.+.+..++|+|+|+ .|+++..++ .|++||+. .+.. . .+.+|...+..++
T Consensus 185 --g~--~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~--------~~~~--~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 185 --GG--LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPR--------DGSV--E-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp --CC--CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTT--------TCCE--E-ECCCSCSHHHHHCCSEE
T ss_pred --CC--ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCC--------CCcE--E-EccCCCcChhhhhhccc
Confidence 11 224457888899999999996 777888888 89999985 3332 2 5667777777777
Q ss_pred ----eCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 305 ----WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 305 ----~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
|+||| .++++++.|+++++|++ ++ .... +.+.|.+++|+ ++..+.+.
T Consensus 249 ~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-------~~~~---~~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 249 TWLGYLPDG-RLAVVARREGRSAVFID--GE-------RVEA---PQGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp EEEEECTTS-CEEEEEEETTEEEEEET--TE-------EECC---CSSEEEEEEEE-TTEEEEEE
T ss_pred cceeEcCCC-cEEEEEEcCCcEEEEEE--CC-------eecc---CCCceEEEEec-CCEEEEEE
Confidence 99999 89999999999999999 44 3332 34678899999 88765443
No 143
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=170.60 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=146.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccCCCcEEEEEec----
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPNEPWVICSVSE---- 73 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~~l~s~s~---- 73 (384)
++|+|++. +++++ .|++|++||+.+ .+....+.+|.. .|.+++|||||+ .|++++.
T Consensus 21 ~~~s~dg~-~~~~~-~d~~i~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~ 83 (719)
T 1z68_A 21 PNWISGQE-YLHQS-ADNNIVLYNIET--------------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKL 83 (719)
T ss_dssp CEESSSSE-EEEEC-TTSCEEEEESSS--------------CCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEEC
T ss_pred cEECCCCe-EEEEc-CCCCEEEEEcCC--------------CcEEEEEccccccccceeeEEECCCCC-eEEEEecCcee
Confidence 47999994 66655 699999999986 233444455543 389999999999 6667665
Q ss_pred -----CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeec
Q psy4577 74 -----DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWK 145 (384)
Q Consensus 74 -----D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~ 145 (384)
|++|++||+.+++... ...+ ...+..++|+|||+.++ ++.+++|+
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~------------------~~~l---------~~~~~~~~~SPDG~~la~~~~~~i~~~~ 136 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVR------------------GNEL---------PRPIQYLCWSPVGSKLAYVYQNNIYLKQ 136 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECC------------------SSCC---------CSSBCCEEECSSTTCEEEEETTEEEEES
T ss_pred EEeecceEEEEEECCCCcccc------------------ceec---------CcccccceECCCCCEEEEEECCeEEEEe
Confidence 7999999998752100 0001 13467899999999887 88999998
Q ss_pred cccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCC
Q psy4577 146 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF 225 (384)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 225 (384)
..+.....+...... .. +
T Consensus 137 ~~~g~~~~l~~~~~~------------------------------------~~--v------------------------ 154 (719)
T 1z68_A 137 RPGDPPFQITFNGRE------------------------------------NK--I------------------------ 154 (719)
T ss_dssp STTSCCEECCCCCBT------------------------------------TT--E------------------------
T ss_pred CCCCCcEEEecCCCc------------------------------------CC--e------------------------
Confidence 865443211000000 00 0
Q ss_pred CCccCCCCceeEEEEeecC---------CceEEEEEcCCCCcEEEEEeCCC-----------------------------
Q psy4577 226 GGFGSVSGKIEIEIKINHE---------GEVNRARYMPQNPCVIATKTPSS----------------------------- 267 (384)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~---------~~v~~v~~~p~~~~~l~s~s~dg----------------------------- 267 (384)
..++. +...+++|+|+|+ .||+++.|.
T Consensus 155 --------------~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~ 219 (719)
T 1z68_A 155 --------------FNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA 219 (719)
T ss_dssp --------------EESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred --------------EcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence 00111 2235788888886 677666442
Q ss_pred -----cEEEEecCCCCCCCCCCCCcc---ce---eeecCCCCceEEEEeCCCCCCeEEEeeCC----CcEEEEe----cC
Q psy4577 268 -----DVLVFDYTKHPSKPDPNGECH---PD---LRLRGHQKEGYGLSWNPSLNGYLLSASDD----HTICLWD----IN 328 (384)
Q Consensus 268 -----~i~iwd~~~~~~~~~~~~~~~---~~---~~~~~h~~~i~~~~~s~~~~~~l~s~s~D----g~i~iwd----~~ 328 (384)
.|++||+. .+... .+ ..+.+|...+.+++||||+ +++++.... ..|++|| +.
T Consensus 220 ~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 220 KNPVVRIFIIDTT--------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp CCCEEEEEEEESS--------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCeeEEEEEECC--------CCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence 78899985 22211 11 1245788899999999997 677775433 2488899 77
Q ss_pred CCCCCCccccceeee----eccCCcEe-----EEEEecCCCccc
Q psy4577 329 ATPKENRVIDAKTIF----TGHTAVVE-----LELIERLTKKAD 363 (384)
Q Consensus 329 ~~~~~~~~~~~~~~~----~~h~~~v~-----~~~~sp~~~~~~ 363 (384)
+++ +...+ .+|...|. .+.|+|||+.+.
T Consensus 291 ~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 291 TWD-------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp SEE-------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCc-------eEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 665 44444 46777777 899999998654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=1.5e-17 Score=142.43 Aligned_cols=255 Identities=10% Similarity=0.027 Sum_probs=149.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-c----cccceEEEEEccCCCcEEEEEe---
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-G----HTAKISDFSWNPNEPWVICSVS--- 72 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-g----h~~~V~~l~~~~~~~~~l~s~s--- 72 (384)
++|+|+++.++++++.++.|.+||+.+. +.+..+. + |...+.+++|+|+++ .|++++
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~ 103 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTG--------------ETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPV 103 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTC--------------CEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCC--------------CeEeeEEcCCcccccccccceEECCCCC-EEEEEeccc
Confidence 4689999766677777899999999762 3333222 2 223677899999998 555554
Q ss_pred ---------cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--ccee
Q psy4577 73 ---------EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEY 141 (384)
Q Consensus 73 ---------~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v 141 (384)
.++.|.+||+.+++. ...... ...+.+++|+|+++.++ ++.+
T Consensus 104 ~~~~~~~~~~~~~i~v~d~~~~~~-------------~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~i 156 (337)
T 1pby_B 104 RLELTHFEVQPTRVALYDAETLSR-------------RKAFEA--------------PRQITMLAWARDGSKLYGLGRDL 156 (337)
T ss_dssp EECSSCEEECCCEEEEEETTTTEE-------------EEEEEC--------------CSSCCCEEECTTSSCEEEESSSE
T ss_pred ccccccccccCceEEEEECCCCcE-------------EEEEeC--------------CCCcceeEECCCCCEEEEeCCeE
Confidence 579999999976411 111110 22356789999998766 8899
Q ss_pred eeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe-EEEEEeecCCCCccc------c
Q psy4577 142 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH-LLIASVQLPNEDAQF------D 214 (384)
Q Consensus 142 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~------~ 214 (384)
.+||..+......+....... ...+.|+....-.... ..+. ...........+... .
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHE-------------SSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCT-------------TTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred EEEECCCCcEeeeeeccccCC---CceeCCCccEEeeecc-------------CCCceeeeeeccccccccccccccccc
Confidence 999987765543322221111 1133333221000000 0000 001111100000000 0
Q ss_pred cccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577 215 ASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR 294 (384)
Q Consensus 215 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 294 (384)
+..+|... +.........+...+.+++|+|+++ +++++ ++.|++||+. .+. .+..+.
T Consensus 221 v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~--------~~~--~~~~~~ 277 (337)
T 1pby_B 221 LLTMDLET----------GEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLE--------KNA--SIKRVP 277 (337)
T ss_dssp EEEEETTT----------CCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETT--------TTE--EEEEEE
T ss_pred eEEEeCCC----------CCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECC--------CCc--Ccceec
Confidence 11122111 2222233345667788999999996 66666 7899999985 332 233333
Q ss_pred CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577 295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 345 (384)
Q Consensus 295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 345 (384)
. ...+.+++|+|+| ++|++++.|+.|++||+.+++ .+..+..
T Consensus 278 ~-~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~-------~~~~~~~ 319 (337)
T 1pby_B 278 L-PHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLE-------KKGQVDL 319 (337)
T ss_dssp C-SSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCC-------EEEEEEC
T ss_pred C-CCceeeEEECCCC-CEEEEEcCCCcEEEEECcCCc-------EEEEEEc
Confidence 2 3457899999999 688888999999999999987 6666653
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=6.5e-18 Score=144.54 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=136.6
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCee-EEEecccccceEEEEEccCCCcEEEEEecC-C--e
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL-LFIHGGHTAKISDFSWNPNEPWVICSVSED-N--I 76 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-~--~ 76 (384)
++|+|+++.+++++..++.|.+||+.+. ++ ...+..+..+..+++|+|+++ .|+++..+ + .
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLE--------------PPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFN 109 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSS--------------SCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCE
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCC--------------ceeEEecccCCCCccceEECCCCC-EEEEecCCCCccc
Confidence 4789999855555555899999999862 33 455566666666699999999 55554444 3 9
Q ss_pred EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cce-eeeecccccc
Q psy4577 77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEE-YKIWKKNTPF 150 (384)
Q Consensus 77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~-v~~w~~~~~~ 150 (384)
|.+||+.+++. +.... ......+++|+|+|+.++ ++. +.+|++....
T Consensus 110 i~v~d~~~~~~-------------~~~~~--------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 110 MQSYSFLKNKF-------------ISTIP--------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp EEEEETTTTEE-------------EEEEE--------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEECCCCCe-------------EEEEE--------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 99999977511 11110 122356899999998665 466 8999876432
Q ss_pred cc-cee-ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCC
Q psy4577 151 LY-DLV-MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGG 227 (384)
Q Consensus 151 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~ 227 (384)
.. ... ........ ...+.++++++.+.+.. .+.....|..
T Consensus 163 ~~~~~~~~~~~~~~~-------------------------------------~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 163 VLFDTGQEFISGGTR-------------------------------------PFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp CEEEEEEEEECSSSS-------------------------------------EEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred cEeecCCccccCCCC-------------------------------------ccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 11 110 00000000 12222333322221111 1111111111
Q ss_pred ccCCCCce-eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC----CC---c
Q psy4577 228 FGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----QK---E 299 (384)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~---~ 299 (384)
..+.. ...........+..++|+|+++.++++...++.|.+||+. ++....+..+..+ .. .
T Consensus 206 ---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
T 3u4y_A 206 ---QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL--------SGTLSFVKSFGHGLLIDPRPLFG 274 (331)
T ss_dssp ---SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT--------TTEEEEEEEEECCCCCCCGGGTT
T ss_pred ---CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC--------CCceeeecccccccccCCCCccc
Confidence 01111 1122233456778999999997555666668899999986 3433223222222 22 2
Q ss_pred eEEEEeCCCCCCeE-EEeeCCCcEEEEecCCC
Q psy4577 300 GYGLSWNPSLNGYL-LSASDDHTICLWDINAT 330 (384)
Q Consensus 300 i~~~~~s~~~~~~l-~s~s~Dg~i~iwd~~~~ 330 (384)
...++|+|++ ++| +++..++.|.+||+...
T Consensus 275 ~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 275 ANQMALNKTE-TKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCCEEECTTS-SEEEEEETTTTEEEEEETTSC
T ss_pred ccceEECCCC-CEEEEecCCCCcEEEEEecCC
Confidence 3568999999 565 45556779999999865
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1.2e-18 Score=154.01 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=59.4
Q ss_pred CCCCCCCCceEE----EeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577 1 VQWSPHNETILA----SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp~~~~~la----t~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~ 76 (384)
|+|+|++. +|| +|+.|++|+|||+.+..... .....+...+..+.+|.+.|.+++|+|++..+|++++.||+
T Consensus 98 l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 98 LALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEA---KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp EEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTT---CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred EEEcCCCC-EEEEEEeccCCCceEEEEEccccccCC---cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 47999997 677 88999999999986521000 00001122356677899999999999985448999999999
Q ss_pred EEEEEccc
Q psy4577 77 MQILSVVC 84 (384)
Q Consensus 77 i~vwd~~~ 84 (384)
|++||+.+
T Consensus 174 v~iwD~~~ 181 (434)
T 2oit_A 174 IAVLQVTE 181 (434)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 99999865
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=2.8e-16 Score=136.07 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=144.7
Q ss_pred CCCCCCCCceEEEeeCC----CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577 1 VQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~ 76 (384)
++|+|+++ +|++++.+ +.|.+|++.... +..+.+.....+......+++ +++.++++...+++
T Consensus 55 l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~----------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 55 LIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK----------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS 121 (361)
T ss_dssp EEECTTSS-EEEEEECCSSTTCEEEEEEEETTT----------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred EEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC----------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence 47899997 67777765 799999987521 112334444445556778888 77745544446899
Q ss_pred EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccc
Q psy4577 77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFL 151 (384)
Q Consensus 77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~ 151 (384)
|.+|++.....+..... ........+... ......+.+++|+|+|+.++ ++.+.+|++.....
T Consensus 122 v~~~~~~~~g~~~~~~~-------~~~~~g~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 122 ITVFPIGQDGALLPASD-------VIEFKGSGPDKE-----RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp EEEEEBCTTSCBCSCSE-------EEECCCCCSCTT-----TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEEeCCCCcCcccce-------eEEccCCCCCcc-----ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 99999975322110000 000000000000 00022356899999998664 55667765532210
Q ss_pred cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
... .. .+...
T Consensus 190 ~~~---~~--------------------------------------~l~~~----------------------------- 199 (361)
T 3scy_A 190 ADN---KE--------------------------------------KFLTK----------------------------- 199 (361)
T ss_dssp TTT---CC--------------------------------------CCEEE-----------------------------
T ss_pred ccc---cc--------------------------------------ceeec-----------------------------
Confidence 000 00 00000
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCC
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPS 308 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~ 308 (384)
+ ........+......++|+|+++.++++...++.|++|++. .+....+..+ ..+......++|+||
T Consensus 200 -~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~--------~g~~~~~~~~~~~~~~~~~~~~i~~spd 269 (361)
T 3scy_A 200 -G-TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA--------DGMLDEIQTVAADTVNAQGSGDIHLSPD 269 (361)
T ss_dssp -E-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE--------TTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred -c-cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec--------CCceEEeEEEecCCCCCCCcccEEECCC
Confidence 0 00001112234467899999997444554478999999986 3433333333 333455789999999
Q ss_pred CCCeEEEeeC--CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577 309 LNGYLLSASD--DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 309 ~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
| ++|+.+.. +++|.+|++..... .+..+..+.. ...+.+++|+|+++.+...+
T Consensus 270 g-~~l~v~~~~~~~~i~v~~~~~~~g---~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 270 G-KYLYASNRLKADGVAIFKVDETNG---TLTKVGYQLT-GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp S-SEEEEEECSSSCEEEEEEECTTTC---CEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred C-CEEEEECCCCCCEEEEEEEcCCCC---cEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence 9 67755554 58999999963211 0113333433 45688999999999776554
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.76 E-value=7.4e-18 Score=159.18 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=79.3
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCCCCCCCC-CccceeeecCCCC---ceEEEEeCC--CCC
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPSS-----DVLVFDYTKHPSKPDPNG-ECHPDLRLRGHQK---EGYGLSWNP--SLN 310 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~---~i~~~~~s~--~~~ 310 (384)
.|...+.+++|+|+|+ .|++++.|+ .|++||+. ++ ....+.. ..+.. .+.+++|+| +|
T Consensus 255 ~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~--------~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg- 323 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAE--------TGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNN- 323 (706)
T ss_dssp CTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETT--------TCCEEEEEEE-EECSSCCCCCSCCEECTTCSS-
T ss_pred CCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECC--------CCceeeEEEE-ccCCCeECccCCceeecCCCC-
Confidence 4667799999999996 777766665 89999986 34 2222211 12222 346789999 98
Q ss_pred CeEEEeeCCCcEEEEecC-CCCCCCccccceeeeeccCCcEeE-EEEecCCCccccccc
Q psy4577 311 GYLLSASDDHTICLWDIN-ATPKENRVIDAKTIFTGHTAVVEL-ELIERLTKKADPVCT 367 (384)
Q Consensus 311 ~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~~~~~c~ 367 (384)
++|++++.|+.++||++. .++ .+..+..|...+.. ++|+|+++.+...+.
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~-------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGR-------LIRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSC-------EEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred EEEEEEccCCccEEEEEECCCC-------EEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 699999999999999987 444 67777778888877 899999987655443
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=4.3e-17 Score=139.58 Aligned_cols=254 Identities=13% Similarity=0.048 Sum_probs=150.3
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-cccc-ceEEEEEccCCCcEEEEEecCCeEEEEEcccCCC
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTA-KISDFSWNPNEPWVICSVSEDNIMQILSVVCVEP 87 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~-~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~ 87 (384)
+|++++.+++|.+||+.+ .+.+..+. ++.. .+.+++|+|+++.++++++.++.|.+||+.+++.
T Consensus 3 ~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 68 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEK--------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET 68 (337)
T ss_dssp EEEEEETTTEEEEEETTT--------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEcCCCCeEEEEECCC--------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe
Confidence 789999999999999976 24444443 3222 4789999999986777777889999999977522
Q ss_pred ccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--c--------------ceeeeeccccccc
Q psy4577 88 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--N--------------EEYKIWKKNTPFL 151 (384)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d--------------~~v~~w~~~~~~~ 151 (384)
+..+..... ......+..++|+|+++.++ + +.+.+||..+...
T Consensus 69 -------------~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 127 (337)
T 1pby_B 69 -------------LGRIDLSTP--------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp -------------EEEEECCBT--------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred -------------EeeEEcCCc--------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE
Confidence 111111100 00012456789999997665 2 7888888866544
Q ss_pred cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
...+... .....+.+.|+... +.+. .+.+.+..+ .
T Consensus 128 ~~~~~~~---~~~~~~~~s~dg~~----------l~~~------~~~i~~~d~----------------~---------- 162 (337)
T 1pby_B 128 RKAFEAP---RQITMLAWARDGSK----------LYGL------GRDLHVMDP----------------E---------- 162 (337)
T ss_dssp EEEEECC---SSCCCEEECTTSSC----------EEEE------SSSEEEEET----------------T----------
T ss_pred EEEEeCC---CCcceeEECCCCCE----------EEEe------CCeEEEEEC----------------C----------
Confidence 3322211 11222334433210 0000 001111111 0
Q ss_pred CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC-----------------------cEEEEecCCCCCCCCCCCCcc
Q psy4577 232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS-----------------------DVLVFDYTKHPSKPDPNGECH 288 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~ 288 (384)
.+.. ......+. ....+.|+|++..+++++..++ .|.+||+. .+...
T Consensus 163 ~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------~~~~~ 232 (337)
T 1pby_B 163 AGTL-VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE--------TGEMA 232 (337)
T ss_dssp TTEE-EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT--------TCCEE
T ss_pred CCcE-eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC--------CCCce
Confidence 0111 11111111 0112367787764444433333 46889986 44433
Q ss_pred ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
...+..+...+.+++|+|++ ++|+++ ++.|++||+.+++ .+..+..+ ..+.+++|+|+++.+...
T Consensus 233 -~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 233 -MREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------SIKRVPLP-HSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp -EEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------EEEEEECS-SCCCEEEECTTSCEEEEE
T ss_pred -EeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------CcceecCC-CceeeEEECCCCCEEEEE
Confidence 44556677788999999998 688877 7999999999886 66666533 467899999999966654
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=1e-15 Score=131.66 Aligned_cols=279 Identities=9% Similarity=-0.037 Sum_probs=152.3
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
+++++++. ++++++.+++|.+||+.+ .+.+..+..+. ..+..++|+|+++.+++++..++.|.+
T Consensus 5 ~~~~~~~~-~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 5 PALKAGHE-YMIVTNYPNNLHVVDVAS--------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCTTCE-EEEEEETTTEEEEEETTT--------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccCCCE-EEEEeCCCCeEEEEECCC--------------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence 46787775 899999999999999976 35555544332 257899999999856667778899999
Q ss_pred EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c------------ceeee
Q psy4577 80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N------------EEYKI 143 (384)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d------------~~v~~ 143 (384)
||+.+++. .......... . .....+..++|+|+|+.++ + +.+.+
T Consensus 70 ~d~~t~~~-------------~~~~~~~~~~---~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 70 IDLDTCKN-------------TFHANLSSVP---G----EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp EETTTTEE-------------EEEEESCCST---T----EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred EeCCCCcE-------------EEEEEccccc---c----cccccccceEECCCCCEEEEEcccccccccccccCCCeEEE
Confidence 99977521 1111110000 0 0012356899999998776 3 78999
Q ss_pred eccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccc----------
Q psy4577 144 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQF---------- 213 (384)
Q Consensus 144 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------- 213 (384)
||..+......+...........+.+.+++..-. ....+. .+.... .. .+..+.....+...
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~--~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 130 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIY--KMDVKT---GK--YTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEE--EECTTT---CC--EEEEECSTTCCCTTBCCCBCCCCC
T ss_pred EECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEE--EEeCCC---Cc--eeccccccccCCccccCccceeee
Confidence 9987644332222211111223344555542000 000000 000000 00 01111100000000
Q ss_pred --------------ccccccCc--------CCCCCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEE
Q psy4577 214 --------------DASNYDTD--------KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVL 270 (384)
Q Consensus 214 --------------~~~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~ 270 (384)
.....|.. ...+.......+.........+...+.+++|+| +++ +++++ ++.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~ 278 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLA 278 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEE
Confidence 00000000 000000001112222222334556788999999 996 66666 88999
Q ss_pred EEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577 271 VFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344 (384)
Q Consensus 271 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 344 (384)
+||+. ++. .+..+.. ...+.+++|+|++ ++|++++.++.|++||+++++ .+..+.
T Consensus 279 ~~d~~--------~~~--~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~-------~~~~~~ 333 (349)
T 1jmx_B 279 KYDLK--------QRK--LIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLE-------KVKNIK 333 (349)
T ss_dssp EEETT--------TTE--EEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTE-------EEEEEE
T ss_pred EEECc--------cCe--EEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccccc-------eeeeee
Confidence 99986 332 2233332 2357799999998 677778889999999999886 665554
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=2.9e-17 Score=137.80 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=134.1
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-ccceEEEEEccCCCcEEEEEe--cCCeE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVS--EDNIM 77 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~~l~s~s--~D~~i 77 (384)
++|+|+++ +||+++ ++.|++||+.+.+ +......+| ...|.+++|+|+++ .|++++ .++..
T Consensus 47 ~~~spdg~-~l~~~~-~~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 47 PNWSPDGK-YLLLNS-EGLLYRLSLAGDP-------------SPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKS 110 (297)
T ss_dssp EEECTTSS-EEEEEE-TTEEEEEESSSCC-------------SCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSC
T ss_pred eEECCCCC-EEEEEc-CCeEEEEeCCCCC-------------CceEeccccccccccceEECCCCC-EEEEEEeCCCCcc
Confidence 47999997 688876 8899999997511 222333444 46789999999999 666777 44677
Q ss_pred EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccc--c
Q psy4577 78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTP--F 150 (384)
Q Consensus 78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~--~ 150 (384)
+||.+..... ... .+.. ...+..++|+|+++.++ ++.+++|+++.. .
T Consensus 111 ~l~~~~~~~~------------~~~-----------~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 111 AIYLLPSTGG------------TPR-----------LMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp EEEEEETTCC------------CCE-----------ECCS---SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred eEEEEECCCC------------ceE-----------Eeec---CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 7777643100 000 0111 12367889999998776 788888886422 1
Q ss_pred ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCCcc
Q psy4577 151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGGFG 229 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~~ 229 (384)
... +..+ ......+.|.|+. ..+.... .+.....|...
T Consensus 165 ~~~-~~~~--~~~~~~~~~s~dg-------------------------------------~~l~~~~~~~~~~~i~~~~- 203 (297)
T 2ojh_A 165 ETR-LTHG--EGRNDGPDYSPDG-------------------------------------RWIYFNSSRTGQMQIWRVR- 203 (297)
T ss_dssp EEE-CCCS--SSCEEEEEECTTS-------------------------------------SEEEEEECTTSSCEEEEEE-
T ss_pred ceE-cccC--CCccccceECCCC-------------------------------------CEEEEEecCCCCccEEEEC-
Confidence 111 1111 1112334444432 2111111 11111111100
Q ss_pred CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCC-----------CcEEEEecCCCCCCCCCCCCccceeeecCCCC
Q psy4577 230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS-----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 298 (384)
Q Consensus 230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 298 (384)
..+. .......|...+..++|+|+++ +|+.++.+ +.|++||+. .+....+..+.+|..
T Consensus 204 -~~~~-~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 204 -VDGS-SVERITDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQLMDMD--------GGNVETLFDLFGGQG 272 (297)
T ss_dssp -TTSS-CEEECCCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEEEEEEEETT--------SCSCEEEEEEEESTT
T ss_pred -CCCC-CcEEEecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCceEEEEEecC--------CCCceeeeccCCCCc
Confidence 0011 1233445667889999999996 66666655 569999986 444445556668888
Q ss_pred ceEEEEeCCCCCCeEEEeeCCC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDH 320 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg 320 (384)
.+.+++|+|++ .+|++++.|.
T Consensus 273 ~~~~~~~spdg-~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDG-DEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTS-SEEEEEEECC
T ss_pred ccccceECCCC-CEEEEEEecc
Confidence 99999999999 6888777653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=5.7e-16 Score=133.38 Aligned_cols=210 Identities=10% Similarity=0.076 Sum_probs=129.8
Q ss_pred CCCCCCCCceEEEee-CCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc---------cccceEEEEEccCCCcEEEE
Q psy4577 1 VQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---------HTAKISDFSWNPNEPWVICS 70 (384)
Q Consensus 1 v~fsp~~~~~lat~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g---------h~~~V~~l~~~~~~~~~l~s 70 (384)
++|+|+++ +|++++ .+++|.+|++...+. ...+..+.. +...+.+++|+|+|+ ++++
T Consensus 91 ~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~ 157 (347)
T 3hfq_A 91 VAVDEARQ-LVYSANYHKGTAEVMKIAADGA-----------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI 157 (347)
T ss_dssp EEEETTTT-EEEEEETTTTEEEEEEECTTSC-----------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred EEECCCCC-EEEEEeCCCCEEEEEEeCCCCC-----------eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence 46899998 566665 789999999964221 122222211 223588999999999 8888
Q ss_pred EecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeec
Q psy4577 71 VSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWK 145 (384)
Q Consensus 71 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~ 145 (384)
...++.|++|++..... +.... .+.. ........++|+|+|+.++ ++.+.+|+
T Consensus 158 ~~~~~~v~~~~~~~~g~-------------~~~~~--------~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQ-------------LSEQS--------VLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp ETTTTEEEEEEECTTSC-------------EEEEE--------EEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEEECCCCc-------------EEEee--------eEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 88899999999973100 00000 0000 0022355799999998654 56677776
Q ss_pred cccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCC
Q psy4577 146 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF 225 (384)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 225 (384)
.....-. + ..+..+...+
T Consensus 216 ~~~~~g~-~--------------------------------------------~~~~~~~~~~----------------- 233 (347)
T 3hfq_A 216 YDTQTGA-F--------------------------------------------TQLGIVKTIP----------------- 233 (347)
T ss_dssp EETTTTE-E--------------------------------------------EEEEEEESSC-----------------
T ss_pred ecCCCCc-e--------------------------------------------EEeeeeeecC-----------------
Confidence 5421000 0 0000000000
Q ss_pred CCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe
Q psy4577 226 GGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW 305 (384)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 305 (384)
.. ......+..++|+|+|+.++++...++.|.+|++.. .+....+..+..+...+..++|
T Consensus 234 -------~~------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 234 -------AD------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-------DGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp -------TT------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-------GGCEEEEEEEECSSSCCCEEEE
T ss_pred -------CC------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-------CCcEEEeEEEecCCCCcCeEEE
Confidence 00 001134788999999975557777899999999852 2333445566666677899999
Q ss_pred CCCCCCeEEEeeC-CCcEEEEecC
Q psy4577 306 NPSLNGYLLSASD-DHTICLWDIN 328 (384)
Q Consensus 306 s~~~~~~l~s~s~-Dg~i~iwd~~ 328 (384)
+|+| ++|++++. ++.|.+|++.
T Consensus 294 spdg-~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 294 DPTE-AFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CTTS-SEEEEEETTTTEEEEEEEC
T ss_pred CCCC-CEEEEEEcCCCcEEEEEEe
Confidence 9999 67777765 4999999554
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=1e-16 Score=140.26 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCCCCCCceEEEeeC-CC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577 1 VQWSPHNETILASSGT-DR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 77 (384)
Q Consensus 1 v~fsp~~~~~lat~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i 77 (384)
.+|||||+ .||.++. ++ .|.+||+.+ .+......+|...+.+++|+|+|+ .|+.++.++.|
T Consensus 41 ~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~--------------g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l 104 (388)
T 3pe7_A 41 KCFTRDGS-KLLFGGAFDGPWNYYLLDLNT--------------QVATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNL 104 (388)
T ss_dssp CCBCTTSC-EEEEEECTTSSCEEEEEETTT--------------CEEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEE
T ss_pred ccCCCCCC-EEEEEEcCCCCceEEEEeCCC--------------CceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeE
Confidence 36999998 5666665 67 477888875 244455566666666789999999 67788889999
Q ss_pred EEEEcccC
Q psy4577 78 QILSVVCV 85 (384)
Q Consensus 78 ~vwd~~~~ 85 (384)
.+||+.++
T Consensus 105 ~~~d~~~g 112 (388)
T 3pe7_A 105 MRVDLATL 112 (388)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999875
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=2.6e-15 Score=129.99 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCCcEE
Q psy4577 246 EVNRARYMPQNPCVIATKTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDHTIC 323 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i~ 323 (384)
....++|+|+++.++++... ++.|.+|++... .+....+..+.. ...+.+++|+|+| ++|++++ .++.|.
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~------~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDET------NGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQ 331 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTT------TCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEE
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCC------CCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEE
Confidence 35789999999744455545 589999998521 233334444444 4568899999999 6777776 679999
Q ss_pred EEecC--CCCCCCccccceeee-eccCCcEeEEEEe
Q psy4577 324 LWDIN--ATPKENRVIDAKTIF-TGHTAVVELELIE 356 (384)
Q Consensus 324 iwd~~--~~~~~~~~~~~~~~~-~~h~~~v~~~~~s 356 (384)
+|++. +++ ..... ..+...+.|+.|.
T Consensus 332 v~~~d~~~g~-------~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 332 IFERDQATGL-------LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCC-------EEECSCCEECSSEEEEEEE
T ss_pred EEEEECCCCc-------EeecceeeeCCCCeEEEEc
Confidence 97665 443 32222 1245578899986
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=1.4e-16 Score=151.02 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc-----eEEEEEccCCCcEEEEEecC-
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWVICSVSED- 74 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-----V~~l~~~~~~~~~l~s~s~D- 74 (384)
++|+|+++ +|+++ |++|++||+.+. +....+.+|... ..+++|||||+ .|+.++.+
T Consensus 22 ~~w~~dg~-~~~~~--~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~ 83 (740)
T 4a5s_A 22 LRWISDHE-YLYKQ--ENNILVFNAEYG--------------NSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYV 83 (740)
T ss_dssp EEECSSSE-EEEEE--TTEEEEEETTTC--------------CEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEE
T ss_pred cEECCCCc-EEEEc--CCcEEEEECCCC--------------ceEEEEechhhhhhcccccceEECCCCC-EEEEEECCe
Confidence 47999996 78886 999999999862 333445666532 34578999999 66677776
Q ss_pred --------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeee
Q psy4577 75 --------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKI 143 (384)
Q Consensus 75 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~ 143 (384)
+.+.+||+.+++.. .+..| ...+...+|||||+.++ ++.+.+
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~-------------------------~l~~~--~~~~~~~~~SPdG~~la~~~~~~i~~ 136 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI-------------------------TEERI--PNNTQWVTWSPVGHKLAYVWNNDIYV 136 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC-------------------------CSSCC--CTTEEEEEECSSTTCEEEEETTEEEE
T ss_pred eeEEEccceEEEEEECCCCcEE-------------------------EcccC--CCcceeeEECCCCCEEEEEECCeEEE
Confidence 45568998775110 11112 34577899999999887 888999
Q ss_pred eccccccc
Q psy4577 144 WKKNTPFL 151 (384)
Q Consensus 144 w~~~~~~~ 151 (384)
|+..+...
T Consensus 137 ~~~~~~~~ 144 (740)
T 4a5s_A 137 KIEPNLPS 144 (740)
T ss_dssp ESSTTSCC
T ss_pred EECCCCce
Confidence 98866543
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=1.3e-15 Score=132.03 Aligned_cols=109 Identities=6% Similarity=-0.063 Sum_probs=70.0
Q ss_pred CCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccc----eeeec----CCCC------ceEEEE-eCC
Q psy4577 244 EGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHP----DLRLR----GHQK------EGYGLS-WNP 307 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~----~h~~------~i~~~~-~s~ 307 (384)
...+..++|+|+|+ ++++++ .++.|.+|++... ++.... +..+. +|.. .+..++ |+|
T Consensus 192 g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 192 GDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPA------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp TCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTT------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred CCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCC------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 45578999999997 555544 5789999987521 122211 11221 2332 588999 999
Q ss_pred CCCCeEEEeeCC-C-----cEEEEecC-CCCCCCcccccee---eeeccCCcEeEEEEec---CCCccccccc
Q psy4577 308 SLNGYLLSASDD-H-----TICLWDIN-ATPKENRVIDAKT---IFTGHTAVVELELIER---LTKKADPVCT 367 (384)
Q Consensus 308 ~~~~~l~s~s~D-g-----~i~iwd~~-~~~~~~~~~~~~~---~~~~h~~~v~~~~~sp---~~~~~~~~c~ 367 (384)
|| ++|+++..+ . +|.+|++. +++ ... ....+...+..++|+| +|+.+...+.
T Consensus 265 dG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 265 SG-KYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp TS-SEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred CC-CEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 99 677766543 3 89999997 443 222 1333555677899999 7887766553
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.68 E-value=5.3e-15 Score=145.38 Aligned_cols=267 Identities=7% Similarity=-0.102 Sum_probs=168.0
Q ss_pred CCCC-CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-ceEEEEEccCCCcEEEEEecCCeEE
Q psy4577 1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fs-p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~l~~~~~~~~~l~s~s~D~~i~ 78 (384)
++|| |+|+ .||+++ ++.|.+|++... . ...+..|.. .+.+++|+ +|+ .|++++.+..+.
T Consensus 301 ~~~S~pdG~-~la~~~-~~~i~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~ 361 (1045)
T 1k32_A 301 EDFSPLDGD-LIAFVS-RGQAFIQDVSGT--------------Y-VLKVPEPLRIRYVRRGGD-TKV-AFIHGTREGDFL 361 (1045)
T ss_dssp EEEEECGGG-CEEEEE-TTEEEEECTTSS--------------B-EEECSCCSCEEEEEECSS-SEE-EEEEEETTEEEE
T ss_pred eeecCCCCC-EEEEEE-cCEEEEEcCCCC--------------c-eEEccCCCcceEEeeeEc-CCC-eEEEEECCCceE
Confidence 3689 9997 577776 889999998751 2 233566777 89999999 988 667778788888
Q ss_pred -EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577 79 -ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD 153 (384)
Q Consensus 79 -vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~ 153 (384)
+|++.+++. . .+.+| ...+.+++|+|+|+.++ ++.+++||..+.....
T Consensus 362 ~~~d~~~~~~--------------~-----------~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~ 414 (1045)
T 1k32_A 362 GIYDYRTGKA--------------E-----------KFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 414 (1045)
T ss_dssp EEEETTTCCE--------------E-----------ECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCc--------------e-----------EecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence 888766310 0 11122 34678999999999887 7899999998766544
Q ss_pred eeecccccccceeeeeccCCCCCCCCccceeEEEEeeecc------CCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577 154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS------DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG 227 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~ 227 (384)
....+.. +...+.|.|++. .+....... .....+.++.+. .
T Consensus 415 ~~~~~~~--~v~~~~~SpDG~----------~la~~~~~~~~~~~~~~~~~i~l~d~~----------------~----- 461 (1045)
T 1k32_A 415 IERSREA--MITDFTISDNSR----------FIAYGFPLKHGETDGYVMQAIHVYDME----------------G----- 461 (1045)
T ss_dssp EEECSSS--CCCCEEECTTSC----------EEEEEEEECSSTTCSCCEEEEEEEETT----------------T-----
T ss_pred eccCCCC--CccceEECCCCC----------eEEEEecCccccccCCCCCeEEEEECC----------------C-----
Confidence 4333221 234456666643 111111100 001112222111 0
Q ss_pred ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC---------------------------
Q psy4577 228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK--------------------------- 280 (384)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~--------------------------- 280 (384)
+. ......|...+..++|+|+|+ .|+.++.++..++|+.......
T Consensus 462 -----g~--~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1045)
T 1k32_A 462 -----RK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 533 (1045)
T ss_dssp -----TE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred -----Cc--EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcc
Confidence 11 344456777888999999996 7778888777777764321100
Q ss_pred ------CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE-------------eeCCCcEEEEecCCCCCCCcccccee
Q psy4577 281 ------PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS-------------ASDDHTICLWDINATPKENRVIDAKT 341 (384)
Q Consensus 281 ------~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s-------------~s~Dg~i~iwd~~~~~~~~~~~~~~~ 341 (384)
.+..+....+..+..|.+.+..++++|+| .++++ .+.+..|++||+.+++ . .
T Consensus 534 ~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~-------~-~ 604 (1045)
T 1k32_A 534 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------V-T 604 (1045)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------E-E
T ss_pred ccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCcccccccccCCCceEEEEECCCCc-------E-E
Confidence 00011112234556677889999999998 66764 2235678888988875 2 2
Q ss_pred eeeccCCcEeEEEEecCCCcccccc
Q psy4577 342 IFTGHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 342 ~~~~h~~~v~~~~~sp~~~~~~~~c 366 (384)
.+. ..+..++|||||+.++..+
T Consensus 605 ~l~---~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 605 EVK---NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp EEE---EEEEEEEECTTSCEEEEEE
T ss_pred Eee---cCcceEEECCCCCEEEEEc
Confidence 332 5688999999999877553
No 158
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.67 E-value=7.5e-16 Score=146.29 Aligned_cols=251 Identities=9% Similarity=-0.001 Sum_probs=138.4
Q ss_pred ccceEEEEEccCCCcEEEEEec-CC-----eEEEEEcccCCCccchhheeeeeeeEEEeccCCc-----cc------ccc
Q psy4577 52 TAKISDFSWNPNEPWVICSVSE-DN-----IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTP-----FL------YDL 114 (384)
Q Consensus 52 ~~~V~~l~~~~~~~~~l~s~s~-D~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~ 114 (384)
...|.+++|+|||+ .|++++. |+ +|++||+.+++.. .+...... .+ .+.
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTR-------------LLVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEE-------------EEECGGGTC---------------
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCcee-------------Eccchhhcccccccccchhhhhhh
Confidence 34699999999999 7778887 88 9999999876321 11110000 00 000
Q ss_pred eeeeeeccCeeEEEEecCceeee---cceeeeeccccc---cccceeecccccccceeeeeccCCCCCCCCccceeEEEE
Q psy4577 115 VMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTP---FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLIL 188 (384)
Q Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (384)
.........+.+++|+|||+.++ .+.+.+|+..+. ....+ ..+ ......+.|.|++. .+..
T Consensus 102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l-~~~--~~~~~~~~~SPDG~----------~la~ 168 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQL-THG--EGFATDAKLSPKGG----------FVSF 168 (741)
T ss_dssp -----CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBC-CCS--SSCEEEEEECTTSS----------EEEE
T ss_pred hhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEc-ccC--CcccccccCCCCCC----------EEEE
Confidence 00000002367899999999887 789999999776 33322 111 12234566666653 1111
Q ss_pred eeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC-
Q psy4577 189 GTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS- 267 (384)
Q Consensus 189 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg- 267 (384)
.. .+.+.+..+. .+.......+.......+ ..... .......+..++|+|+|+ .|++++.|+
T Consensus 169 ~~-----~~~i~~~d~~----~g~~~~~~~~~~~~~~~g---~~~~v----~~~~~~~~~~~~~SpDg~-~l~~~~~d~~ 231 (741)
T 2ecf_A 169 IR-----GRNLWVIDLA----SGRQMQLTADGSTTIGNG---IAEFV----ADEEMDRHTGYWWAPDDS-AIAYARIDES 231 (741)
T ss_dssp EE-----TTEEEEEETT----TTEEEECCCCCCSSEEES---CCCHH----HHHHSCCCCSEEECTTSS-CEEEEEEECT
T ss_pred Ee-----CCcEEEEecC----CCCEEEeccCCccceecc---cccee----eeeccccccceEECCCCC-EEEEEEEcCC
Confidence 11 0122222221 000000000000000000 00000 000012257899999996 677776655
Q ss_pred --------------------------------cEEEEecCCCCCCCCCC-CCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 268 --------------------------------DVLVFDYTKHPSKPDPN-GECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 268 --------------------------------~i~iwd~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
.|++||+. . +....+.....|...+..++| ||| ++|+
T Consensus 232 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~ 301 (741)
T 2ecf_A 232 PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA--------EQAQTQWIDLGKEQDIYLARVNW-RDP-QHLS 301 (741)
T ss_dssp TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS--------TTCCCEEECCCSCSSEEEEEEEE-EET-TEEE
T ss_pred CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC--------CCCceEEecCCCCcceEEEEEEe-CCC-CEEE
Confidence 78888875 3 332222111257788999999 999 6887
Q ss_pred EeeC-----CCcEEEEecCCCCCCCccccceeeeeccCC----cEeEEEEecCCCccc
Q psy4577 315 SASD-----DHTICLWDINATPKENRVIDAKTIFTGHTA----VVELELIERLTKKAD 363 (384)
Q Consensus 315 s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~ 363 (384)
.++. +..|++||+.+++ ....+..|.. .+.+++|+|||+.+.
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQ-------QRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCC-------EEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred EEEecccCCeEEEEEEECCCCc-------eEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 6654 6789999999987 6666665543 457899999998443
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.63 E-value=4.9e-15 Score=136.69 Aligned_cols=93 Identities=6% Similarity=-0.131 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC--c
Q psy4577 248 NRARYMPQNPCVIATKTPS----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH--T 321 (384)
Q Consensus 248 ~~v~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg--~ 321 (384)
.+++|+|+|+ ++++++.+ +.|++||+. .+. ...+.+|...+..++||||| ++|++++.|+ .
T Consensus 153 ~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~--------~g~---~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 153 FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLS--------SGG---LRVFDSGEGSFSSASISPGM-KVTAGLETAREAR 219 (582)
T ss_dssp CEEEEEEETT-EEEEEEEEETTEEEEEEEETT--------TCC---CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEE
T ss_pred ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCC--------CCC---ceEeecCCCccccceECCCC-CEEEEccCCCeeE
Confidence 8899999996 78877766 789999985 333 23667888899999999999 7999888898 9
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCcEeEEE--------EecCCCc
Q psy4577 322 ICLWDINATPKENRVIDAKTIFTGHTAVVELEL--------IERLTKK 361 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~sp~~~~ 361 (384)
|++||+.+++ .. .+.+|...+..++ |+|||..
T Consensus 220 i~~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~ 259 (582)
T 3o4h_A 220 LVTVDPRDGS-------VE-DLELPSKDFSSYRPTAITWLGYLPDGRL 259 (582)
T ss_dssp EEEECTTTCC-------EE-ECCCSCSHHHHHCCSEEEEEEECTTSCE
T ss_pred EEEEcCCCCc-------EE-EccCCCcChhhhhhccccceeEcCCCcE
Confidence 9999999886 55 6777887787777 9999943
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.8e-15 Score=140.25 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=67.8
Q ss_pred ecCCceE-----EEEEcCCCCcEEE-EEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577 242 NHEGEVN-----RARYMPQNPCVIA-TKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 242 ~~~~~v~-----~v~~~p~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
.|.+.+. .+.|+|+|+.+++ ++..+|. |.+||+. .+. ...+..+...+..+.++ ++ +.|
T Consensus 304 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~--------~~~---~~~lt~~~~~v~~~~~~-d~-~~i 370 (719)
T 1z68_A 304 SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT--------VEN---AIQITSGKWEAINIFRV-TQ-DSL 370 (719)
T ss_dssp CSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC--------STT---CEECSCSSSCEEEEEEE-CS-SEE
T ss_pred cCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC--------CCc---eEecccCceEEEEEEEE-eC-CEE
Confidence 4566666 7899999974444 4456665 5555553 222 23455566667787777 76 455
Q ss_pred EEeeC-----CCcEEEEecCCCCCCCccccceee-eeccCCcEeEEEEecCCCcccccccc
Q psy4577 314 LSASD-----DHTICLWDINATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVCTL 368 (384)
Q Consensus 314 ~s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c~~ 368 (384)
+..+. ++.+++|.+.......+ ..++.. +.+|...+..+.|+|+++.++..|+.
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISIGSYPPS-KKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEECSSSSCC-EEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred EEEEecCCCCCceEEEEEEeCCCCCCC-ceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 55444 48899998865210000 001111 23366778899999999877765543
No 161
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.62 E-value=9.3e-14 Score=119.64 Aligned_cols=226 Identities=10% Similarity=0.007 Sum_probs=128.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---------ceEEEEEccCCCcEEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---------KISDFSWNPNEPWVICSV 71 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---------~V~~l~~~~~~~~~l~s~ 71 (384)
++|+|+++.+++++..++.|.+||..+ .+.+..+..+.. .+.+++|+|+++.++++.
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 159 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKT--------------GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG 159 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTT--------------CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCC--------------CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe
Confidence 368999986667777789999999976 234444443322 278999999999554444
Q ss_pred -ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecc
Q psy4577 72 -SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKK 146 (384)
Q Consensus 72 -s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~ 146 (384)
+.++.|.+||+.+++ ....+.. + ...+.+++|+|+++.++ ++.+.+||.
T Consensus 160 ~~~~~~i~~~d~~~~~-------------~~~~~~~-----------~--~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 160 IGKESVIWVVDGGNIK-------------LKTAIQN-----------T--GKMSTGLALDSEGKRLYTTNADGELITIDT 213 (353)
T ss_dssp ESSSCEEEEEETTTTE-------------EEEEECC-----------C--CTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred cCCCceEEEEcCCCCc-------------eEEEecC-----------C--CCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence 357899999997751 1111110 0 22356789999998776 788999998
Q ss_pred ccccccceeecccc--cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577 147 NTPFLYDLVMTHAL--EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD 224 (384)
Q Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~ 224 (384)
.+......+..... ......+.+.|+.. .+.+... ..+.+.+ +|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~----------~l~~~~~---~~~~v~~----------------~d~~--- 261 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKEHFFINISLDTARQ----------RAFITDS---KAAEVLV----------------VDTR--- 261 (353)
T ss_dssp TTTEEEEEEECCCSSSCCCEEEEEEETTTT----------EEEEEES---SSSEEEE----------------EETT---
T ss_pred CCCeEEEEEEcCCCCCCcccceEEECCCCC----------EEEEEeC---CCCEEEE----------------EECC---
Confidence 76554332221100 00011223333221 0000000 0011111 1111
Q ss_pred CCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577 225 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS 304 (384)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 304 (384)
.+.. ....... ....++|+|+++.++++...++.|.+||.. ++. .+..+..+ ..+.+++
T Consensus 262 -------~~~~-~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--------~~~--~~~~~~~~-~~~~~~~ 320 (353)
T 3vgz_A 262 -------NGNI-LAKVAAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAK--------SYK--VVKTFDTP-THPNSLA 320 (353)
T ss_dssp -------TCCE-EEEEECS--SCCCEEEETTTTEEEEEETTTTEEEEEETT--------TTE--EEEEEECC-SEEEEEE
T ss_pred -------CCcE-EEEEEcC--CCceEEECCCCCEEEEEECCCCeEEEEECC--------CCe--EEEEEecC-CCCCeEE
Confidence 1121 1111111 125799999997567776689999999985 333 23344433 4679999
Q ss_pred eCCCCCCeEEEeeCCC
Q psy4577 305 WNPSLNGYLLSASDDH 320 (384)
Q Consensus 305 ~s~~~~~~l~s~s~Dg 320 (384)
|+|+| ++|+.+..++
T Consensus 321 ~s~dg-~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADG-KTLYVSVKQK 335 (353)
T ss_dssp ECTTS-CEEEEEEECC
T ss_pred EcCCC-CEEEEEEccc
Confidence 99998 6665555543
No 162
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.62 E-value=4.1e-13 Score=127.12 Aligned_cols=137 Identities=9% Similarity=0.064 Sum_probs=80.8
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc------------------eEEEEEcc
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK------------------ISDFSWNP 62 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~------------------V~~l~~~~ 62 (384)
++|||||+ .||.++. +.|++||+.+. +.......+... +.+++|+|
T Consensus 119 ~~~SPdG~-~la~~~~-~~i~~~~~~~g--------------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp 182 (723)
T 1xfd_A 119 AGWGPKGQ-QLIFIFE-NNIYYCAHVGK--------------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (723)
T ss_dssp CCBCSSTT-CEEEEET-TEEEEESSSSS--------------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred cEECCCCC-EEEEEEC-CeEEEEECCCC--------------ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence 47999998 6888775 79999999762 222222332222 37899999
Q ss_pred CCCcEEEEEecC-CeEEEEEcccCCCc--cch-------hheeeeeeeEEEeccCCcccccceeeee----eccCeeEEE
Q psy4577 63 NEPWVICSVSED-NIMQILSVVCVEPF--DDA-------VEERVINEEYKIWKKNTPFLYDLVMTHA----LEWPSLTAQ 128 (384)
Q Consensus 63 ~~~~~l~s~s~D-~~i~vwd~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~ 128 (384)
||+ .|++++.| +.+++|++...... ... .........+.+|+.........+..+. ....+.+++
T Consensus 183 Dg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (723)
T 1xfd_A 183 DGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (723)
T ss_dssp TSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred CCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE
Confidence 999 55566544 56777776422110 000 0000112356777765543212222210 134577899
Q ss_pred EecCceeee--------cceeeeeccccccccce
Q psy4577 129 WLPDVTRVI--------NEEYKIWKKNTPFLYDL 154 (384)
Q Consensus 129 ~~~~~~~~~--------d~~v~~w~~~~~~~~~~ 154 (384)
|+|+|+.++ +..+.+||..+......
T Consensus 262 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred EeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 999999875 35788999877655443
No 163
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.5e-13 Score=115.47 Aligned_cols=236 Identities=10% Similarity=0.013 Sum_probs=145.5
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
++|+|++..+++++..++.|..||..+ . ...+..+...+.+++|+|+|. ++++...++.|.+|
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDG---------------Q-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQ 95 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTS---------------C-EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCC---------------C-eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEE
Confidence 368899876888998999999999875 2 344455677899999999999 77776677899999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-c---ceeeeeccccccccceee
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-N---EEYKIWKKNTPFLYDLVM 156 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-d---~~v~~w~~~~~~~~~~~~ 156 (384)
|..+++. ..+... ..+ .....+..++++|+|+..+ + ++...+... .
T Consensus 96 d~~~g~~--------------~~~~~~-------~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~--------~ 145 (296)
T 3e5z_A 96 REPGGEW--------------ESIADS-------FEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY--------G 145 (296)
T ss_dssp CSTTCCE--------------EEEECE-------ETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS--------C
T ss_pred cCCCCcE--------------EEEeec-------cCC-CCCCCCCCEEECCCCCEEEECCccccccccccc--------c
Confidence 9866421 110000 000 0022355788889887654 1 221100000 0
Q ss_pred cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577 157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 236 (384)
.. . ......+..+. .. +.
T Consensus 146 ~~-~----------------------------------~~~~~~l~~~~--------------~~-----------g~-- 163 (296)
T 3e5z_A 146 GE-M----------------------------------ELPGRWVFRLA--------------PD-----------GT-- 163 (296)
T ss_dssp CC-C----------------------------------CSSSCEEEEEC--------------TT-----------SC--
T ss_pred cc-c----------------------------------cCCCcEEEEEC--------------CC-----------CC--
Confidence 00 0 00000111111 00 11
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~s 315 (384)
......+....+.++|+|+++ ++++.+.++.|++|++.. .+.. .....+..+...+.+++++++| +++++
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~ 234 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNA-------RGETEYQGVHFTVEPGKTDGLRVDAGG-LIWAS 234 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECS-------SSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEE
T ss_pred EEEeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECC-------CCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEE
Confidence 112223445678999999996 558888889999999852 2222 1122233355567889999998 66666
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE-ecCCCccccc
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI-ERLTKKADPV 365 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~~~~~ 365 (384)
. ++.|.+||.. ++ .+..+..+.. +++++| +|++..+...
T Consensus 235 ~--~~~v~~~~~~-g~-------~~~~~~~~~~-~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 235 A--GDGVHVLTPD-GD-------ELGRVLTPQT-TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp E--TTEEEEECTT-SC-------EEEEEECSSC-CCEEEEESTTSCEEEEE
T ss_pred c--CCeEEEECCC-CC-------EEEEEECCCC-ceeEEEECCCCCEEEEE
Confidence 6 7899999987 55 6777777777 999999 4777755443
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.61 E-value=6.9e-14 Score=121.12 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=51.9
Q ss_pred ceEEEE-EcCCCCcEEEEEeC-CC-----cEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCC---CCCCeEE
Q psy4577 246 EVNRAR-YMPQNPCVIATKTP-SS-----DVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNP---SLNGYLL 314 (384)
Q Consensus 246 ~v~~v~-~~p~~~~~l~s~s~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~---~~~~~l~ 314 (384)
.+..++ |+|+|+ +|++++. +. .|.+|++.. ++....+.. ...+...+..++|+| +| ++|+
T Consensus 255 ~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~ 325 (365)
T 1jof_A 255 YRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRD-------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMA 325 (365)
T ss_dssp EEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECT-------TSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEE
T ss_pred ccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECC-------CCCEEEeeeeeecCCCCcccceecCCCcCC-CEEE
Confidence 477899 999997 5554443 23 899999852 232222111 333455567899999 78 7888
Q ss_pred EeeCC-CcEEEEecCCC
Q psy4577 315 SASDD-HTICLWDINAT 330 (384)
Q Consensus 315 s~s~D-g~i~iwd~~~~ 330 (384)
+++.+ ++|.+|++...
T Consensus 326 v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSSCEEEEEEEETT
T ss_pred EEEcCCCeEEEEEEchh
Confidence 88764 99999999764
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=1.2e-14 Score=127.33 Aligned_cols=98 Identities=7% Similarity=-0.006 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEee--
Q psy4577 246 EVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSAS-- 317 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s-- 317 (384)
.+..++|+|+++ .|+.++.+ +.|++||+. .+....+..+.+ .. +.|+| +| ++|++++
T Consensus 239 ~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~--------~g~~~~l~~~~~----~~-~~~s~~dg-~~l~~~~~~ 303 (396)
T 3c5m_A 239 SCTHEFWIPDGS-AMAYVSYFKGQTDRVIYKANPE--------TLENEEVMVMPP----CS-HLMSNFDG-SLMVGDGCD 303 (396)
T ss_dssp EEEEEEECTTSS-CEEEEEEETTTCCEEEEEECTT--------TCCEEEEEECCS----EE-EEEECSSS-SEEEEEECC
T ss_pred cccceEECCCCC-EEEEEecCCCCccceEEEEECC--------CCCeEEeeeCCC----CC-CCccCCCC-ceEEEecCC
Confidence 577899999997 44444433 449999985 343333322322 23 89999 98 6887754
Q ss_pred --------------CCCcEEEEecCCCCCCCccccceeeeeccCC-----------cEeEEEEecCCCcccccc
Q psy4577 318 --------------DDHTICLWDINATPKENRVIDAKTIFTGHTA-----------VVELELIERLTKKADPVC 366 (384)
Q Consensus 318 --------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~~~~~c 366 (384)
.+..|++||+.+++ . ..+..|.. .+..++|+|+++.+....
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~-------~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKS-------A-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTB-------C-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCc-------e-EEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 34789999998774 2 33444443 256789999998766554
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=6.3e-13 Score=113.30 Aligned_cols=103 Identities=7% Similarity=0.058 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC------CCCCeEEEeeCC
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP------SLNGYLLSASDD 319 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~------~~~~~l~s~s~D 319 (384)
...+++++|++.+++++...++.|++||.. ++.........++...+..++|+| +| ..+++...+
T Consensus 197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g-~~~v~~~~~ 267 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADRENGRIQCFKTD--------TKEFVREIKHASFGRNVFAISYIPGFLFAVNG-KPYFGDQEP 267 (329)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------TCCEEEEECCTTTTTCEEEEEEETTEEEEEEC-CCCTTCSCC
T ss_pred CCcEEEEECCCCEEEEEECCCCEEEEEECC--------CCcEEEEEeccccCCCcceeeecCCEEEEeCC-CEEeccCCC
Confidence 467899999844689998899999999984 354433333345667889999999 55 355555566
Q ss_pred CcEEEEecCCCCCCCccccceeee---eccCCcEeEEEEecCCCcccc
Q psy4577 320 HTICLWDINATPKENRVIDAKTIF---TGHTAVVELELIERLTKKADP 364 (384)
Q Consensus 320 g~i~iwd~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~~~~ 364 (384)
.+|++||..+++ .+..+ .++.....+++++|+|....+
T Consensus 268 ~~v~~~~~~~g~-------~~~~~~~~~~~~~~p~~ia~~~dG~lyva 308 (329)
T 3fvz_A 268 VQGFVMNFSSGE-------IIDVFKPVRKHFDMPHDIVASEDGTVYIG 308 (329)
T ss_dssp CCEEEEETTTCC-------EEEEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred cEEEEEEcCCCe-------EEEEEcCCCCccCCeeEEEECCCCCEEEE
Confidence 799999999987 77776 357778999999999954443
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.59 E-value=1.1e-12 Score=109.52 Aligned_cols=99 Identities=10% Similarity=0.080 Sum_probs=73.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec--CCCCceEEEEeCCCCCCeEEEeeCCC-c
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR--GHQKEGYGLSWNPSLNGYLLSASDDH-T 321 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~s~~~~~~l~s~s~Dg-~ 321 (384)
..+.+++++|++ +++++.+.++.|++||.. +.. +..+. ++...+..++++|+| +++++...++ .
T Consensus 164 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~---------g~~--~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~ 230 (286)
T 1q7f_A 164 EFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE---------GQY--LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFN 230 (286)
T ss_dssp SSEEEEEECSSS-EEEEEEGGGTEEEEEETT---------CCE--EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCE
T ss_pred CCcEEEEECCCC-CEEEEECCCCEEEEEcCC---------CCE--EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEE
Confidence 357899999999 488888889999999973 322 22333 333578999999998 7888888886 9
Q ss_pred EEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCcccc
Q psy4577 322 ICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKADP 364 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~ 364 (384)
|.+||.. ++ .+..+..+.. .+.+++++|+|....+
T Consensus 231 i~~~~~~-g~-------~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 231 LTIFTQD-GQ-------LISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp EEEECTT-SC-------EEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred EEEECCC-CC-------EEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 9999964 44 5666655433 4789999999975544
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=4.7e-12 Score=109.21 Aligned_cols=90 Identities=10% Similarity=0.169 Sum_probs=70.8
Q ss_pred EEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577 250 ARYMPQNPCVIATKTP----------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD 319 (384)
Q Consensus 250 v~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D 319 (384)
++|+|+++.++++... .+.|.+||+. +. +.+..+..+. +.+++|+||| ++|++++.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--------t~--~~v~~i~~~~--p~~ia~spdg-~~l~v~n~- 324 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--------TK--QRVARIPGRD--ALSMTIDQQR-NLMLTLDG- 324 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--------TT--EEEEEEECTT--CCEEEEETTT-TEEEEECS-
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--------CC--cEEEEEecCC--eeEEEECCCC-CEEEEeCC-
Confidence 7899998766665441 3479999985 33 3455677666 8999999999 68888876
Q ss_pred CcEEEEecCCC--CCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 320 HTICLWDINAT--PKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 320 g~i~iwd~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
++|.+||..++ + .+.++..+...-..++++|+|.
T Consensus 325 ~~v~v~D~~t~~l~-------~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPK-------LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCE-------EEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcce-------eeEEeccCCCCcEEEEecCCCC
Confidence 99999999998 7 7887766677788899999986
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=2.5e-12 Score=109.79 Aligned_cols=266 Identities=7% Similarity=-0.039 Sum_probs=152.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
+.|+|++. .++..+.++.++.|.- .....+.++...+.+++|+|++. +++++..++.|.+|
T Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 11 LFYSGKSN-SAVPIISESELQTITA-----------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKI 71 (333)
T ss_dssp CCSCGGGG-CSSCCCCGGGSCEEEC-----------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEE
T ss_pred eeecCCcc-ceeEEeecccCccccc-----------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEE
Confidence 46888876 4666677888999922 44555566667889999999999 77788889999999
Q ss_pred EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeecccccccc
Q psy4577 81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTPFLY 152 (384)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~~~~ 152 (384)
|..+++. ..+.. . ....+.+++|+|+++.++ + +.+.+|+..+....
T Consensus 72 d~~~~~~--------------~~~~~----------~--~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 72 NPETKEI--------------KRPFV----------S--HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp CTTTCCE--------------EEEEE----------C--SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred eCCCCcE--------------EEEee----------C--CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 9876411 11100 0 134577899999998665 2 36788877655432
Q ss_pred ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577 153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 232 (384)
..+...........+.+.+++ .+.+....-........+..++...
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~g------------------------~l~v~~~~~~~~~~~~~l~~~~~~~---------- 171 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSKG------------------------GFYFTDFRGYSTNPLGGVYYVSPDF---------- 171 (333)
T ss_dssp EEECSSSSCCCEEEEEECTTS------------------------CEEEEECCCBTTBCCEEEEEECTTS----------
T ss_pred EEEccCccCCcccceEECCCC------------------------CEEEEeccccccCCCceEEEEeCCC----------
Confidence 221110000001111121111 1111111000000000011111110
Q ss_pred CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cc-----eeeecCCCCceEEEEeC
Q psy4577 233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HP-----DLRLRGHQKEGYGLSWN 306 (384)
Q Consensus 233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~-----~~~~~~h~~~i~~~~~s 306 (384)
+.+ .....+...+..++|+|+++.++++.+.++.|++||+... +.. .. ...+.++ ..+..++++
T Consensus 172 ~~~--~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~-------g~~~~~~~~~~~~~~~~~-~~~~~i~~d 241 (333)
T 2dg1_A 172 RTV--TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD-------GVTIQPFGATIPYYFTGH-EGPDSCCID 241 (333)
T ss_dssp CCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-------SSSEEEEEEEEEEECCSS-SEEEEEEEB
T ss_pred CEE--EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC-------CcCcccccceEEEecCCC-CCCCceEEC
Confidence 111 1112233457899999999646666667889999998521 111 10 1122233 467889999
Q ss_pred CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCC------cEeEEEEecCCCcccc
Q psy4577 307 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA------VVELELIERLTKKADP 364 (384)
Q Consensus 307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~sp~~~~~~~ 364 (384)
++| +++++...++.|.+||.. ++ .+..+..+.. .+.+++|+|++..+..
T Consensus 242 ~~G-~l~v~~~~~~~v~~~d~~-g~-------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 242 SDD-NLYVAMYGQGRVLVFNKR-GY-------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp TTC-CEEEEEETTTEEEEECTT-SC-------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCC-CEEEEEcCCCEEEEECCC-CC-------EEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 998 788888888999999984 44 5555543332 6899999999866543
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.54 E-value=1.9e-13 Score=129.53 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=50.9
Q ss_pred CCCCCCCceEEEeeCC---------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe
Q psy4577 2 QWSPHNETILASSGTD---------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 72 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s 72 (384)
+|||||+ .||.++.+ +.+.+||+.+. + ...+.+|.+.+...+|||||+ .||.+
T Consensus 68 ~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~--------------~-~~~l~~~~~~~~~~~~SPdG~-~la~~- 129 (740)
T 4a5s_A 68 SISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKR--------------Q-LITEERIPNNTQWVTWSPVGH-KLAYV- 129 (740)
T ss_dssp EECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTT--------------E-ECCSSCCCTTEEEEEECSSTT-CEEEE-
T ss_pred EECCCCC-EEEEEECCeeeEEEccceEEEEEECCCC--------------c-EEEcccCCCcceeeEECCCCC-EEEEE-
Confidence 4699998 67887766 55679999861 2 233566778899999999999 55565
Q ss_pred cCCeEEEEEcccC
Q psy4577 73 EDNIMQILSVVCV 85 (384)
Q Consensus 73 ~D~~i~vwd~~~~ 85 (384)
.|+.|.+|++.++
T Consensus 130 ~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 130 WNNDIYVKIEPNL 142 (740)
T ss_dssp ETTEEEEESSTTS
T ss_pred ECCeEEEEECCCC
Confidence 5789999999875
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=1.3e-12 Score=123.23 Aligned_cols=105 Identities=11% Similarity=-0.056 Sum_probs=69.4
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEEe
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s~ 316 (384)
.+...+.. .|+|+|..+++.+..+ +.|.+||+. .+.......+..|.. .+..++|++++ .++++.
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~ 353 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT--------DPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCY 353 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT--------SCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC--------CCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEE
Confidence 34444444 4788886555554433 369999985 222112234445544 68889999776 789999
Q ss_pred eCCCc--EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577 317 SDDHT--ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 317 s~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
..|+. |++||+.+++ .+..+..+.+.|..+.++|+++.+.
T Consensus 354 ~~~g~~~l~~~~~~~g~-------~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGA-------LLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp EETTEEEEEEEETTTCC-------EEEEECCCSSEEEEEECCTTCSEEE
T ss_pred EECCEEEEEEEECCCCC-------EEEecCCCCceEEEEecCCCCCEEE
Confidence 99985 5566776666 6677777778899999999887544
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.52 E-value=9.3e-13 Score=123.40 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=66.5
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc--------eEEEEeCCCCCCeE
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE--------GYGLSWNPSLNGYL 313 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--------i~~~~~s~~~~~~l 313 (384)
.|...+..++|+|+|+ ++++++.++..+||.+... .+.... ...++... +..++|+|++ +++
T Consensus 239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~------~~~~~~--l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~ 308 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPA------TGAATQ--LCRREEEFAGPLWTPGMRWFAPLANG-LIA 308 (662)
T ss_dssp ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTT------TCCEEE--SSCCSSBSSCCCCSTTCCSEEECTTS-CEE
T ss_pred CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECC------CCceee--cccccccccCccccccCceEeEeCCC-EEE
Confidence 4567889999999997 8888888885455444210 222221 12222221 5678999998 799
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577 314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
++++. +.++||.+..... .+..+..|...+..+ |++++..+.
T Consensus 309 ~~~~~-~~~~l~~~d~~~~------~~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESG------ELVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp EEEBS-SSCEEEEEETTTT------EEEECCSSCCEEEEE-EEEETTEEE
T ss_pred EEEEc-CccEEEEEECCCC------cEEEecCCCCeEEEE-EecCCCEEE
Confidence 99998 9999995542211 456666777777766 256665433
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.46 E-value=1.4e-11 Score=105.76 Aligned_cols=56 Identities=5% Similarity=-0.085 Sum_probs=44.0
Q ss_pred ceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 299 EGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 299 ~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
.+.+++|+| ++ ++|+++ ++.|++||+.+++ .+..+.. ...+.+++|+|+++.+...
T Consensus 256 ~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 256 LYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK-------LIKAANL-DHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp CEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE-------EEEEEEC-SSCCCEEEECSSSSCEEEE
T ss_pred cceeeEecCCCC-CEEEEE--cCeEEEEECccCe-------EEEEEcC-CCCccceEECCCCCEEEEe
Confidence 466788999 98 688877 8899999999886 6666653 3457899999999876654
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=1.8e-12 Score=121.50 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPS--------SDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
...+..++|+|+|+ .|+.++.+ ..|++||+.. ++.. .......+|...+..++|+||| ++++
T Consensus 187 ~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~-------~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~ 257 (662)
T 3azo_A 187 HRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTE-------DGRFADTRTLLGGPEEAIAQAEWAPDG-SLIV 257 (662)
T ss_dssp SSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECT-------TSCEEEEEEEEEETTBCEEEEEECTTS-CEEE
T ss_pred CCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECC-------CCcccccEEeCCCCCceEcceEECCCC-eEEE
Confidence 44577889999996 66665544 3799999841 1211 2222334567789999999999 5888
Q ss_pred EeeCCC--cEEEEecCCCCCCCccccceeeeeccCCc--------EeEEEEecCCCcccc
Q psy4577 315 SASDDH--TICLWDINATPKENRVIDAKTIFTGHTAV--------VELELIERLTKKADP 364 (384)
Q Consensus 315 s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~~~~ 364 (384)
+++.|+ .|++||+.+++ ......++... +..++|+|++..+.+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~-------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGA-------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EECTTSSCEEEEECTTTCC-------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred EECCCCCeEEEEEECCCCc-------eeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 888888 55666655554 33333333222 556788888775443
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.45 E-value=4.5e-11 Score=99.65 Aligned_cols=188 Identities=7% Similarity=0.062 Sum_probs=117.7
Q ss_pred CCCCCceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 4 SPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 4 sp~~~~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.+++. ++++... ++.|++||... +.+..+. ++...+.+++++|+|. ++++...++.|.+||
T Consensus 86 ~~~g~-l~v~~~~~~~~i~~~d~~g---------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 86 RNSGD-IIVTERSPTHQIQIYNQYG---------------QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFD 148 (286)
T ss_dssp TTTTE-EEEEECGGGCEEEEECTTS---------------CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred cCCCe-EEEEcCCCCCEEEEECCCC---------------cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEc
Confidence 34554 5666543 88999999542 3333332 3445789999999998 777777889999999
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
.... .+..+..... ...+.+++++|+|+.++ ++.|++|+.....+
T Consensus 149 ~~g~--------------~~~~~~~~~~-----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~------ 197 (286)
T 1q7f_A 149 QNGN--------------VLHKFGCSKH-----------LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL------ 197 (286)
T ss_dssp TTSC--------------EEEEEECTTT-----------CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE------
T ss_pred CCCC--------------EEEEeCCCCc-----------cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE------
Confidence 6542 1111111000 12456899999887554 34555554321100
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
..+.
T Consensus 198 --------------------------------------------~~~~-------------------------------- 201 (286)
T 1q7f_A 198 --------------------------------------------RQIG-------------------------------- 201 (286)
T ss_dssp --------------------------------------------EEES--------------------------------
T ss_pred --------------------------------------------EEEc--------------------------------
Confidence 0000
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeEE
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSS-DVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l~ 314 (384)
..++...+.+++++|+|. ++++...++ .|++||. .+.. +..+..+ ...+.+++++|+| ++++
T Consensus 202 --~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~---------~g~~--~~~~~~~~~~~~~~~i~~~~~g-~l~v 266 (286)
T 1q7f_A 202 --GEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ---------DGQL--ISALESKVKHAQCFDVALMDDG-SVVL 266 (286)
T ss_dssp --CTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT---------TSCE--EEEEEESSCCSCEEEEEEETTT-EEEE
T ss_pred --cCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECC---------CCCE--EEEEcccCCCCcceeEEECCCC-cEEE
Confidence 001123567899999994 888877775 9999996 3332 2233333 2347899999998 6777
Q ss_pred EeeCCCcEEEEecCCCC
Q psy4577 315 SASDDHTICLWDINATP 331 (384)
Q Consensus 315 s~s~Dg~i~iwd~~~~~ 331 (384)
+ +.|++|++|++....
T Consensus 267 s-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 267 A-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp E-ETTTEEEEEECSCCC
T ss_pred E-CCCCeEEEEEccccc
Confidence 7 579999999987654
No 176
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.5e-10 Score=96.99 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc---cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
...+.++|+|+++.++++.+.++.|.+|++... .+.. ..+..+..+......++++++| ++.++...++.
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~------~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~ 221 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ------TGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGR 221 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT------TCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTE
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCC------CCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCE
Confidence 446889999999766777777899999997411 2322 1222333444567899999999 78888888889
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCCcccccc
Q psy4577 322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIE-RLTKKADPVC 366 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~~c 366 (384)
|..||..+++ .+..+..+...+++++|. |++..+....
T Consensus 222 v~~~d~~tG~-------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 222 VIRLDPVTGK-------RLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEECTTTCC-------EEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEEcCCCce-------EEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 9999999887 888887777789999999 8887655443
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.40 E-value=1.2e-11 Score=116.43 Aligned_cols=102 Identities=9% Similarity=-0.122 Sum_probs=65.9
Q ss_pred cCCceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeEEEee
Q psy4577 243 HEGEVNRARYMPQNPCVIATKT---PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l~s~s 317 (384)
+...+....+ +++. +++... .++.|.+||+. .+.......+..| ...+..++|+ ++ .++++..
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~ 337 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA--------KPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYL 337 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT--------BCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEE
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC--------CCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEE
Confidence 3444455555 6675 666554 35889999985 2221112233333 4467888998 55 6999999
Q ss_pred CCCcEEEEecC-CCCCCCccccceeeeecc-CCcEeEEEEecCCCccc
Q psy4577 318 DDHTICLWDIN-ATPKENRVIDAKTIFTGH-TAVVELELIERLTKKAD 363 (384)
Q Consensus 318 ~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~ 363 (384)
.|+..+||.+. .++ ....+..+ .+.|..+.++|+++.+.
T Consensus 338 ~dg~~~l~~~~~~g~-------~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 338 KDATSEVRVATLKGK-------PVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp ETTEEEEEEEETTCC-------EEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred ECCEEEEEEEeCCCC-------eeEEecCCCCeEEEEeecCCCCCEEE
Confidence 99999998776 333 44555544 66788888999887655
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.38 E-value=6.7e-11 Score=103.17 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=43.8
Q ss_pred EEEcCCCCcEEEEE--------eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-----------ceEEEEeCCCCC
Q psy4577 250 ARYMPQNPCVIATK--------TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-----------EGYGLSWNPSLN 310 (384)
Q Consensus 250 v~~~p~~~~~l~s~--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----------~i~~~~~s~~~~ 310 (384)
++|+|+|+.++++. ..+..|++||+. .+.. ..+..|.. .+.+++|+|||
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~--------~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg- 362 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK--------NGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDD- 362 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETT--------TTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTS-
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEecc--------CCce---EEeccccCcccccccccccCCCCccCCCCC-
Confidence 37899997444332 456789999985 3322 34444544 57889999999
Q ss_pred CeEEEe-eCCCcEEEEecCC
Q psy4577 311 GYLLSA-SDDHTICLWDINA 329 (384)
Q Consensus 311 ~~l~s~-s~Dg~i~iwd~~~ 329 (384)
+.|+.. ..+|...||.+.-
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SEEEEEECTTSSCEEEEEEC
T ss_pred CEEEEEecCCCceeEEEEEC
Confidence 565554 4678888886654
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=1.2e-10 Score=96.16 Aligned_cols=100 Identities=6% Similarity=-0.016 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
.+.+++++|++. ++++...++.|++||.. +.... .....+...+.+++++++| .++++...++.|.+|
T Consensus 151 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~---------~~~~~-~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 151 DPDGVAVDNSGN-VYVTDTDNNRVVKLEAE---------SNNQV-VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKL 218 (270)
T ss_dssp SCCCEEECTTCC-EEEEEGGGTEEEEECTT---------TCCEE-ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEE
T ss_pred CceeEEEeCCCC-EEEEECCCCEEEEEecC---------CCceE-eecccCCCCceEEEECCCC-CEEEEECCCCcEEEE
Confidence 467789999995 88887778899999974 21111 1112233568899999998 788888888999999
Q ss_pred ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577 326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP 364 (384)
Q Consensus 326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 364 (384)
|..... .......+...+.++++.|+|....+
T Consensus 219 ~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 219 LAGSTT-------STVLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp CTTCSC-------CEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred cCCCCc-------ceeeccCCCCCceeEEECCCCCEEEE
Confidence 987654 22222233456899999999974433
No 180
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=1.1e-11 Score=106.18 Aligned_cols=82 Identities=9% Similarity=-0.043 Sum_probs=62.8
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccc
Q psy4577 260 IATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA 339 (384)
Q Consensus 260 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 339 (384)
+|+++.||.|.+||+. .+.... +...|++++|||+| ++.|..||++++|+..... .
T Consensus 139 ~av~~~dG~L~v~dl~--------~~~~~~------~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~-------~ 194 (388)
T 1xip_A 139 LVILNSVNDLSALDLR--------TKSTKQ------LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGE-------M 194 (388)
T ss_dssp EEEEETTSEEEEEETT--------TCCEEE------EEESEEEEEECSSE---EEEEETTSCEEEEEEETTE-------E
T ss_pred EEEEECCCCEEEEEcc--------CCcccc------ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcc-------c
Confidence 7778999999999996 333221 44579999999997 6779999999999887764 2
Q ss_pred --eeee------e---ccCCcEeEEEEecCCCccccc
Q psy4577 340 --KTIF------T---GHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 340 --~~~~------~---~h~~~v~~~~~sp~~~~~~~~ 365 (384)
..++ . +|...|.+|.|.+++..+.+.
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3333 2 477889999999988766543
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.36 E-value=6.6e-11 Score=100.75 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=123.7
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe---------cccccceEEEEEcc-CCCcEEEE
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH---------GGHTAKISDFSWNP-NEPWVICS 70 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------~gh~~~V~~l~~~~-~~~~~l~s 70 (384)
|+|+|+|. ++++...+++|++||..... ..+..+ .++-....+|+|+| ++. ++++
T Consensus 96 ia~d~~g~-l~v~d~~~~~v~~~~~~g~~-------------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~ 160 (329)
T 3fvz_A 96 LSIDTDGN-YWVTDVALHQVFKLDPHSKE-------------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVS 160 (329)
T ss_dssp EEECTTSC-EEEEETTTTEEEEECTTCSS-------------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEE
T ss_pred EEECCCCC-EEEEECCCCEEEEEeCCCCe-------------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEE
Confidence 46889997 88888889999999986411 122222 34555789999999 666 7777
Q ss_pred Ee-cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeee
Q psy4577 71 VS-EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIW 144 (384)
Q Consensus 71 ~s-~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w 144 (384)
.+ .++.|++|+.... .+..+....... ....+ .-.....++++|+ +..++ ++.|++|
T Consensus 161 d~~~~~~I~~~~~~g~--------------~~~~~~~~g~~~-~~~~~--~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 161 DGYCNSRIVQFSPSGK--------------FVTQWGEESSGS-SPRPG--QFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp ECSSCCEEEEECTTSC--------------EEEEECEECCSS-SCCTT--EESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eCCCCCeEEEEcCCCC--------------EEEEeccCCCCC-CCCCc--ccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 76 6899999995431 111111100000 00000 0123568999998 55444 5667776
Q ss_pred ccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577 145 KKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD 224 (384)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~ 224 (384)
+..+......+ .
T Consensus 224 ~~~~G~~~~~~-------------------------------------------------~------------------- 235 (329)
T 3fvz_A 224 KTDTKEFVREI-------------------------------------------------K------------------- 235 (329)
T ss_dssp ETTTCCEEEEE-------------------------------------------------C-------------------
T ss_pred ECCCCcEEEEE-------------------------------------------------e-------------------
Confidence 65422221100 0
Q ss_pred CCCccCCCCceeEEEEeecCCceEEEEEcC------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cC
Q psy4577 225 FGGFGSVSGKIEIEIKINHEGEVNRARYMP------QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RG 295 (384)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~ 295 (384)
...+...+..++|+| ++. ++++...+..|++||+. ++.. +..+ .+
T Consensus 236 ---------------~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~--------~g~~--~~~~~~~~~ 289 (329)
T 3fvz_A 236 ---------------HASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFS--------SGEI--IDVFKPVRK 289 (329)
T ss_dssp ---------------CTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETT--------TCCE--EEEECCSSS
T ss_pred ---------------ccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcC--------CCeE--EEEEcCCCC
Confidence 001223455666666 332 33334455689999975 4432 3333 35
Q ss_pred CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577 296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
+.....+|+++|+| .++++...+++|++|++...
T Consensus 290 ~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 290 HFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred ccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 66778999999999 79999999999999998754
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.35 E-value=1.7e-10 Score=99.00 Aligned_cols=86 Identities=7% Similarity=-0.064 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCCeEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPS--------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNGYLLS 315 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~~l~s 315 (384)
..+..+ +|+|+ .|+.++.+ ..|.+|| . +. ......+|...+.. +.|+ ++ ++++
T Consensus 217 ~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d-~---------~~--~~~l~~~~~~~~~~~~~~s-dg--~~~~ 278 (347)
T 2gop_A 217 VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD-G---------KE--VMGILDEVDRGVGQAKIKD-GK--VYFT 278 (347)
T ss_dssp ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC-S---------SC--EEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC-C---------Cc--eEeccccCCcccCCccEEc-Cc--EEEE
Confidence 334444 89996 55555533 3577776 2 11 12234456677886 9999 75 8899
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER 357 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 357 (384)
++.|+.++|| +.+++ . ..+..+...|.+++|+|
T Consensus 279 ~~~~~~~~l~-~~~g~-------~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGE-------I-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEETTEEEEE-EESSS-------E-EEEECSSSEEEEEEESS
T ss_pred EecCCcEEEE-EcCCc-------e-EEEecCCCeEEeeeeeC
Confidence 9999999999 88443 3 33444577899999999
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=4.4e-10 Score=94.89 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=75.4
Q ss_pred CceEEEEEc----CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc---cceeeecCCC-CceEEEEeCCCCCCeEEEe
Q psy4577 245 GEVNRARYM----PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC---HPDLRLRGHQ-KEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 245 ~~v~~v~~~----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~h~-~~i~~~~~s~~~~~~l~s~ 316 (384)
.....++++ |+++.++++...++.|++||... .+.. .....+.++. .....++++++| +++++.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~ 243 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-------PAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVAN 243 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-------TTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-------CCccccceEEEECCCCCCCCCCceEECCCC-CEEEEE
Confidence 446788999 99854566666789999999741 1211 1222344444 567899999998 788888
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
..++.|.+||..+++ .+..+..+...+.+++|+|++..+
T Consensus 244 ~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQ-------PKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp ETTTEEEEECTTCBS-------CSEEEECSSSCEEEEEECTTSSEE
T ss_pred cCCCEEEEEcCCCCc-------EeEEEeCCCCCceeEEECCCCCEE
Confidence 888999999998766 556666666789999999999844
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=1.6e-09 Score=98.32 Aligned_cols=271 Identities=10% Similarity=0.098 Sum_probs=143.8
Q ss_pred ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc--cCC
Q psy4577 9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV--CVE 86 (384)
Q Consensus 9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~--~~~ 86 (384)
.++++...+++|.++|..+ .+++..+... ..+..+.|+|+|+ ++++++.|+.|.+||+. +.+
T Consensus 168 ~~~V~~~~~~~V~viD~~t--------------~~v~~~i~~g-~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST--------------YEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp EEEEEETTTTEEEEEETTT--------------CCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCC
T ss_pred eEEEEeCCCCeEEEEECCC--------------CeEEEEEeCC-CCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCc
Confidence 3667777899999999986 3555555432 3577999999999 55677899999999995 321
Q ss_pred CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEe----cCceeee-----cceeeeeccccccccceeec
Q psy4577 87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL----PDVTRVI-----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-----d~~v~~w~~~~~~~~~~~~~ 157 (384)
.. .. +.. ......++|+ |+|+.++ ++++.++|..+......+..
T Consensus 232 ~v-------------~~----------i~~----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 232 TV-------------AE----------IKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp EE-------------EE----------EEC----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred Ee-------------EE----------Eec----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 10 00 000 1123478999 6998776 68888988766544333222
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
....... ..+.+.. .+..+.. ++ .+...+..+. ..+.+....+... ..+ .
T Consensus 285 ~~~~~~~--~~~~p~~--------rva~i~~-s~----~~~~~vv~~~---~~g~v~~vd~~~~-----------~~~-~ 334 (567)
T 1qks_A 285 RGMTYDE--QEYHPEP--------RVAAILA-SH----YRPEFIVNVK---ETGKILLVDYTDL-----------NNL-K 334 (567)
T ss_dssp CEECTTT--CCEESCC--------CEEEEEE-CS----SSSEEEEEET---TTTEEEEEETTCS-----------SEE-E
T ss_pred ccccccc--ccccCCC--------ceEEEEE-cC----CCCEEEEEec---CCCeEEEEecCCC-----------ccc-e
Confidence 1100000 0000000 0000000 00 0111111111 1111111111100 011 1
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCCCCCeEE
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~~~~~l~ 314 (384)
...+........+.|+|+++++++++..++.|.++|+. ++........ ..|.+....+ ++|++..+++
T Consensus 335 v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~--------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~ 405 (567)
T 1qks_A 335 TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK--------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWA 405 (567)
T ss_dssp EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT--------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEE
T ss_pred eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC--------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEE
Confidence 22233445567889999998666777678999999986 3433222222 1243212122 5887424555
Q ss_pred Eee-CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577 315 SAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 315 s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
++. .+++|.++|..+.+.....+..++++......-..+..||+++.
T Consensus 406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 554 56899999998743222223366666644333234667888763
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.33 E-value=4.6e-10 Score=92.71 Aligned_cols=215 Identities=9% Similarity=0.056 Sum_probs=136.1
Q ss_pred ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEecCCeEEEEEcccCCC
Q psy4577 9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEP 87 (384)
Q Consensus 9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~ 87 (384)
.+|++++.|+.|.+||.++ .+.+..+..+. ..+.++++.|+|+ +++ +.++.|..||. +++
T Consensus 6 ~~lv~~~~~~~v~~~d~~t--------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~- 66 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT--------------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGR- 66 (276)
T ss_dssp EEEEECTTCSEEEEEETTT--------------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSC-
T ss_pred cEEEeeCCCCEEEEEECCC--------------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCC-
Confidence 4899999999999999866 36777777665 4789999999999 766 45788999998 431
Q ss_pred ccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecc---eeeeeccccccccceeecccccccc
Q psy4577 88 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINE---EYKIWKKNTPFLYDLVMTHALEWPS 164 (384)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~---~v~~w~~~~~~~~~~~~~~~~~~~~ 164 (384)
.+|+...+. ...+.++.+.|+|+.++.. .-+++.
T Consensus 67 --------------~~W~~~~~~----------~~~~~~~~~~~dG~~lv~~~~~~~~v~~------------------- 103 (276)
T 3no2_A 67 --------------ELWNIAAPA----------GCEMQTARILPDGNALVAWCGHPSTILE------------------- 103 (276)
T ss_dssp --------------EEEEEECCT----------TCEEEEEEECTTSCEEEEEESTTEEEEE-------------------
T ss_pred --------------EEEEEcCCC----------CccccccEECCCCCEEEEecCCCCEEEE-------------------
Confidence 334332210 1235678888888776511 111110
Q ss_pred eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577 165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE 244 (384)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (384)
+.+++. .+..+.+. ... ..+.
T Consensus 104 ----vd~~Gk-------------------------~l~~~~~~------------~~~------------------~~~~ 124 (276)
T 3no2_A 104 ----VNMKGE-------------------------VLSKTEFE------------TGI------------------ERPH 124 (276)
T ss_dssp ----ECTTSC-------------------------EEEEEEEC------------CSC------------------SSGG
T ss_pred ----EeCCCC-------------------------EEEEEecc------------CCC------------------Cccc
Confidence 000000 01111100 000 0011
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
.....+++.++|. ++++...++.|..||. .+. .+.++..+ ....++...++| +++++++.+++|..
T Consensus 125 ~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~---------~G~--~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~ 190 (276)
T 3no2_A 125 AQFRQINKNKKGN-YLVPLFATSEVREIAP---------NGQ--LLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQ 190 (276)
T ss_dssp GSCSCCEECTTSC-EEEEETTTTEEEEECT---------TSC--EEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEE
T ss_pred ccccCceECCCCC-EEEEecCCCEEEEECC---------CCC--EEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEE
Confidence 1234456788885 8899999999999997 333 34455443 346678888998 79999998899999
Q ss_pred EecCCCCCCCccccceeeeeccC------CcEeEEEEecCCCccccc
Q psy4577 325 WDINATPKENRVIDAKTIFTGHT------AVVELELIERLTKKADPV 365 (384)
Q Consensus 325 wd~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~sp~~~~~~~~ 365 (384)
+|..+++ .+.++..+. ..+..++.-++|....+.
T Consensus 191 ~d~~tG~-------~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 191 LNLESNR-------IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ECTTTCC-------EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EeCcCCc-------EEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999887 666665321 226777777777654443
No 186
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=3.4e-09 Score=89.98 Aligned_cols=105 Identities=7% Similarity=-0.056 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC-Cc---cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG-EC---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~---~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
..+.++|+|+++.++++.+.++.|.+|++... .+ .. ..+..+.........++++++| .+.++...++.
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~------~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~ 252 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR------TGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA 252 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTT------TCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcccc------cCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCE
Confidence 46789999999756666667889999997410 12 11 1122333344567889999998 67777767789
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCCccccc
Q psy4577 322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIE-RLTKKADPV 365 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~~ 365 (384)
|.+||. .++ .+..+..+...+++++|+ |++..+...
T Consensus 253 v~~~d~-~g~-------~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 253 VDRYDT-DGN-------HIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEECT-TCC-------EEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred EEEECC-CCC-------EEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 999998 454 666666666679999998 887765433
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.28 E-value=9.4e-09 Score=85.94 Aligned_cols=256 Identities=7% Similarity=-0.050 Sum_probs=142.5
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
+++|+|. ++++...++.|.+||... . ........+...+.++++.+++. ++++...++.|..|+
T Consensus 21 ~~d~~g~-l~v~~~~~~~v~~~d~~~-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 21 TVSDKGK-VWITQHKANMISCINLDG-K-------------ITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRIT 84 (299)
T ss_dssp EECTTSC-EEEEETTTTEEEEECTTC-C-------------EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EECCCCC-EEEEecCCCcEEEEcCCC-C-------------eEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEEC
Confidence 4678886 666665678999999762 1 22222233456799999999998 766766688899998
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
.... +..+.... ....+.++++.+++...+ ++.+..|+. ..........
T Consensus 85 ~~g~---------------~~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 85 KKGI---------------IKEYTLPN-----------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp TTSC---------------EEEEECSS-----------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred CCCc---------------EEEEeCCC-----------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence 7521 11111110 023466888999887655 456777665 2221111000
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
.... ....+.+.+ ...+.+.... ... +..+|. .+.+..
T Consensus 138 ~~~~-~~~~i~~~~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~ 175 (299)
T 2z2n_A 138 NKGS-YPSFITLGS------------------------DNALWFTENQ----NNA--IGRITE-----------SGDITE 175 (299)
T ss_dssp STTC-CEEEEEECT------------------------TSCEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred CCCC-CCceEEEcC------------------------CCCEEEEeCC----CCE--EEEEcC-----------CCcEEE
Confidence 0000 000111110 1111111100 000 011111 112211
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
.........+.++++++++. ++++...++.|.+||.. +.... ..+..+...+.+++++++| +++++..
T Consensus 176 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~---------g~~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~ 243 (299)
T 2z2n_A 176 FKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTS---------GEITE-FKIPTPNARPHAITAGAGI-DLWFTEW 243 (299)
T ss_dssp EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT---------CCEEE-EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred eeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCC---------CcEEE-EECCCCCCCceeEEECCCC-CEEEecc
Confidence 11122345678999999985 77776678899999972 22221 2234455678999999998 6777776
Q ss_pred CCCcEEEEecCCCCCCCccccceee--eeccCCcEeEEEEecCCCcccc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTI--FTGHTAVVELELIERLTKKADP 364 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~ 364 (384)
.++.|..||.. ++ +.. +..+...+.++++ +++....+
T Consensus 244 ~~~~i~~~d~~-g~--------~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 244 GANKIGRLTSN-NI--------IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp TTTEEEEEETT-TE--------EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred CCceEEEECCC-Cc--------eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 78999999983 32 222 2344567899999 88775444
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.27 E-value=1.3e-10 Score=101.52 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=21.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCC
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSK 27 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~ 27 (384)
.|+|+|+ .||.++.++.|++||+.+
T Consensus 87 ~~spdg~-~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 87 FISTDER-AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp EECTTSS-EEEEEETTTEEEEEETTT
T ss_pred eECCCCC-EEEEEEcCCcEEEEECCC
Confidence 5899997 688888888999999875
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.25 E-value=7.3e-09 Score=88.23 Aligned_cols=69 Identities=6% Similarity=-0.007 Sum_probs=51.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC----Ce
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED----NI 76 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D----~~ 76 (384)
++|+|++. +++++..++.|.+||..+. +.......+...+.+++|+|++. ++++...+ +.
T Consensus 50 ~~~~~~g~-l~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 50 LNFDRQGQ-LFLLDVFEGNIFKINPETK--------------EIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGG 113 (333)
T ss_dssp EEECTTSC-EEEEETTTCEEEEECTTTC--------------CEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCE
T ss_pred cEECCCCC-EEEEECCCCEEEEEeCCCC--------------cEEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCce
Confidence 36889986 7888888999999998751 22222234567899999999998 77666666 68
Q ss_pred EEEEEcccC
Q psy4577 77 MQILSVVCV 85 (384)
Q Consensus 77 i~vwd~~~~ 85 (384)
|.+||..++
T Consensus 114 i~~~d~~~~ 122 (333)
T 2dg1_A 114 IFAATENGD 122 (333)
T ss_dssp EEEECTTSC
T ss_pred EEEEeCCCC
Confidence 999998764
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=1.3e-08 Score=92.52 Aligned_cols=290 Identities=14% Similarity=0.027 Sum_probs=146.9
Q ss_pred CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEc----cCCCcEEEEEecCCe
Q psy4577 1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN----PNEPWVICSVSEDNI 76 (384)
Q Consensus 1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~----~~~~~~l~s~s~D~~ 76 (384)
+.||||++ +|++++.|+.|.+||+.... .+.+..+.... ....++|+ |+|++++++.-.+++
T Consensus 202 v~~SpDGr-~lyv~~~dg~V~viD~~~~t------------~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 202 SRLSASGR-YLFVIGRDGKVNMIDLWMKE------------PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp EEECTTSC-EEEEEETTSEEEEEETTSSS------------CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred eEECCCCC-EEEEEcCCCeEEEEECCCCC------------CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCe
Confidence 46899998 67778899999999995100 24444444323 46799999 699966666667799
Q ss_pred EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccc
Q psy4577 77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFL 151 (384)
Q Consensus 77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~ 151 (384)
|.++|..+.+.+ +......... .....| .+..+.++..++++..++ .+++.++|......
T Consensus 268 v~ViD~~t~~~~-------------~~i~~~~~~~-~~~~~~-p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 268 YVIMDGETLEPK-------------KIQSTRGMTY-DEQEYH-PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp EEEEETTTCCEE-------------EEEECCEECT-TTCCEE-SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred EEEEECCCCcEE-------------EEEecccccc-cccccc-CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 999998775322 1111100000 000011 022456777777765443 57777776644321
Q ss_pred cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577 152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 231 (384)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 231 (384)
... ...........+.|.+++. .+...... .+.+.+ +|..
T Consensus 333 ~~v-~~i~~~~~~~d~~~~pdgr----------~~~va~~~---sn~V~V----------------iD~~---------- 372 (567)
T 1qks_A 333 LKT-TEISAERFLHDGGLDGSHR----------YFITAANA---RNKLVV----------------IDTK---------- 372 (567)
T ss_dssp EEE-EEEECCSSEEEEEECTTSC----------EEEEEEGG---GTEEEE----------------EETT----------
T ss_pred cee-eeeeccccccCceECCCCC----------EEEEEeCC---CCeEEE----------------EECC----------
Confidence 110 0000000001122222211 11111100 111111 1111
Q ss_pred CCceeEEEE----eecCCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577 232 SGKIEIEIK----INHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN 306 (384)
Q Consensus 232 ~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 306 (384)
.+++..... ..|.+.-..+ ++|++..+++++. .++.|.++|....... ....+.+..+......-..++.+
T Consensus 373 t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~ 448 (567)
T 1qks_A 373 EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTH 448 (567)
T ss_dssp TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECC
T ss_pred CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeC
Confidence 111111111 1344322222 5787544666654 4689999998631100 11234455665543444568899
Q ss_pred CCCCCeEEEeeC-------CCcEEEEecCCCCCCCccccceeee--------eccCCcEeEEEEecCCCccccc
Q psy4577 307 PSLNGYLLSASD-------DHTICLWDINATPKENRVIDAKTIF--------TGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 307 ~~~~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
|++ ++|..... .++|.++|+.+.+..+... .+..+ ..-...+..+.|+|+|+.+-..
T Consensus 449 p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 449 PNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp TTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCC-CeEEEecCCCCCcccCceEEEEECCcccccccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 998 56555442 3699999998771100000 11222 1123568899999999976543
No 191
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=9.5e-09 Score=89.92 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=67.8
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---------------CceEEEEeCCCCCCeE
Q psy4577 249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---------------KEGYGLSWNPSLNGYL 313 (384)
Q Consensus 249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------------~~i~~~~~s~~~~~~l 313 (384)
.++|+|++.+++++-..++.|+.|+.. +. ...+.++. .....++++|+| +++
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~---------g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~ly 337 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPD---------GE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFY 337 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT---------CC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecC---------CC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEE
Confidence 899999654688888888999999874 32 12222221 347899999999 688
Q ss_pred EEee-CCCcEEEEecCCCCCCCccccceeeeecc---------------CCcEeEEEEecCCCcccc
Q psy4577 314 LSAS-DDHTICLWDINATPKENRVIDAKTIFTGH---------------TAVVELELIERLTKKADP 364 (384)
Q Consensus 314 ~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~sp~~~~~~~ 364 (384)
++-+ .+++|+.|++.++ .+.++.++ -.....+++.|++....+
T Consensus 338 vad~~~~~~I~~~~~~~G--------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDG--------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp EEETTTTCEEEEEETTTT--------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred EEeCCCCCEEEEEECCCC--------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 8888 8999999998766 34444444 235788999998765443
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.20 E-value=2.7e-09 Score=100.63 Aligned_cols=109 Identities=8% Similarity=-0.006 Sum_probs=64.7
Q ss_pred cCCceEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTP-----SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
|...+..+.|+|+|+ +|+.++. +..|++||+....... .+. .....+..+...+.. .|+|+| ..|+..+
T Consensus 231 ~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~-~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s 304 (710)
T 2xdw_A 231 EPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGI--TGI-LKWVKLIDNFEGEYD-YVTNEG-TVFTFKT 304 (710)
T ss_dssp CTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSS--CSS-CCCEEEECSSSSCEE-EEEEET-TEEEEEE
T ss_pred CCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECccccccc--CCc-cceEEeeCCCCcEEE-EEeccC-CEEEEEE
Confidence 345577899999997 5554443 5689999985200000 021 123455666665655 488998 4555444
Q ss_pred CC----CcEEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCcc
Q psy4577 318 DD----HTICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKA 362 (384)
Q Consensus 318 ~D----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~ 362 (384)
.+ +.|.+||+.++... ....+..|.. .+.+++|++++..+
T Consensus 305 ~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEES-----KWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CTTCTTCEEEEEETTSCCGG-----GCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred CCCCCCCEEEEEeCCCCCcc-----cceeccCCCCCCeEEEEEEEcCCEEE
Confidence 42 36999999876410 1244444543 68889998665543
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.19 E-value=1.9e-09 Score=102.19 Aligned_cols=93 Identities=5% Similarity=-0.134 Sum_probs=59.7
Q ss_pred cCCCCcEEEEEeC----CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577 253 MPQNPCVIATKTP----SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328 (384)
Q Consensus 253 ~p~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~ 328 (384)
+|+++ .|+..+. ++.|.+||+. .+.......+..+...+..++|+ ++ .++++...|+..+||.+.
T Consensus 324 ~~dg~-~l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 324 DGVGD-QLWFVSGDGAPLKKIVRVDLS--------GSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEETT-EEEEEECTTCTTCEEEEEECS--------SSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEE
T ss_pred eccCC-EEEEEECCCCCCCEEEEEeCC--------CCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEe
Confidence 47786 4444444 3459999975 21111122334455567778887 44 688999999988888765
Q ss_pred -CCCCCCccccceeeeec-cCCcEeEEEEecCCCccc
Q psy4577 329 -ATPKENRVIDAKTIFTG-HTAVVELELIERLTKKAD 363 (384)
Q Consensus 329 -~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~ 363 (384)
.++ ....+.. +.+.|..+.|+|+++.+.
T Consensus 393 ~~g~-------~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 393 LDGK-------PAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp TTSC-------EEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred CCCC-------ceeeccCCCCeEEEEeecCCCCCEEE
Confidence 333 4455543 356789999999987655
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.18 E-value=4.2e-09 Score=86.75 Aligned_cols=75 Identities=4% Similarity=-0.085 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
..+.+++++++| +++++...++.|++|+.. +.... .....+...+.+++++|+| +++++...+++|++
T Consensus 192 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~---------~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 192 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAG---------STTST-VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVK 259 (270)
T ss_dssp CSEEEEEECTTC-CEEEEETTTSCEEEECTT---------CSCCE-ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEE
T ss_pred CCceEEEECCCC-CEEEEECCCCcEEEEcCC---------CCcce-eeccCCCCCceeEEECCCC-CEEEEECCCCEEEE
Confidence 456789999999 588887788999999974 22111 1122233568999999999 79999999999999
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
++....+
T Consensus 260 ~~~~~~~ 266 (270)
T 1rwi_B 260 LTSLEHH 266 (270)
T ss_dssp ECCCGGG
T ss_pred EcCCCcc
Confidence 9998764
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.18 E-value=1.3e-08 Score=86.53 Aligned_cols=63 Identities=8% Similarity=-0.045 Sum_probs=47.3
Q ss_pred CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
+..++++...++.|.+||..+ .+.+..+.. ......+++++++. +.++...++.|.+||+.++
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t--------------~~~~~~i~~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~ 115 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINT--------------FKEVGRITG-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTY 115 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTT--------------CCEEEEEEC-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTT
T ss_pred CCEEEEEEcCCCEEEEEECcc--------------cEEEEEcCC-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCC
Confidence 344667777789999999986 345455543 35788999999985 7666658999999999875
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.15 E-value=2.8e-09 Score=100.28 Aligned_cols=95 Identities=7% Similarity=-0.086 Sum_probs=56.3
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS- 317 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s- 317 (384)
|...+.++.|+|+|+ +|+.++.++ .|++|+.. .+. ...+..+...+....| ++|. ++++..
T Consensus 225 ~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~--------~~~---~~~l~~~~~~~~~~~~-~~g~-l~~~s~~ 290 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPG--------EKD---FRLLVKGVGAKYEVHA-WKDR-FYVLTDE 290 (695)
T ss_dssp CTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTT--------CSS---CEEEEECSSCCEEEEE-ETTE-EEEEECT
T ss_pred CCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCC--------CCc---eEEeecCCCceEEEEe-cCCc-EEEEECC
Confidence 455788999999997 555445444 55555432 222 3345556556666667 6774 555554
Q ss_pred --CCCcEEEEecCCCCCCCccccceeeeecc--CCcEeEEEEe
Q psy4577 318 --DDHTICLWDINATPKENRVIDAKTIFTGH--TAVVELELIE 356 (384)
Q Consensus 318 --~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s 356 (384)
.++.|++||+.++... ....+..| ...|.+++|+
T Consensus 291 ~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 291 GAPRQRVFEVDPAKPARA-----SWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp TCTTCEEEEEBTTBCSGG-----GCEEEECCCSSCEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCcc-----CCeEEecCCCCCeEEEEEEE
Confidence 3589999999876410 12333322 3456777776
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.13 E-value=7e-09 Score=88.83 Aligned_cols=87 Identities=7% Similarity=0.103 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC-------cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577 246 EVNRARYMPQNPCVIATKTPSS-------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~ 318 (384)
.+..++|+|++ ++++++.++ ...||.+. .+.. ..+..+ ..+..+ +|+| ++|+.++.
T Consensus 172 ~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--------~~~~---~~l~~~-~~~~~~--spdg-~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--------DGKE---EKMFEK-VSFYAV--DSDG-ERILLYGK 234 (347)
T ss_dssp TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--------TTEE---EEEEEE-ESEEEE--EECS-SCEEEEEC
T ss_pred CcccccCCCCe--EEEEEecccccccccccccEEEeC--------CCce---EEeccC-cceeeE--CCCC-CEEEEEEc
Confidence 67899999998 666665542 45666653 1222 233334 445544 9999 67777765
Q ss_pred C--------CcEEEEecCCCCCCCccccceeeeeccCCcEeE-EEEecCC
Q psy4577 319 D--------HTICLWDINATPKENRVIDAKTIFTGHTAVVEL-ELIERLT 359 (384)
Q Consensus 319 D--------g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~ 359 (384)
+ ..|++|| +++ ......+|...+.. +.|+ ++
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~-------~~~l~~~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKE-------VMGILDEVDRGVGQAKIKD-GK 274 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSC-------EEESSTTCCSEEEEEEEET-TE
T ss_pred cccCCccccceEEEEC--CCc-------eEeccccCCcccCCccEEc-Cc
Confidence 4 3688888 443 44444566778886 8998 76
No 198
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.6e-08 Score=85.03 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.|+|+++.+++++..++.|..|+... . ...+..+...+.+++|+++|. ++++...++.|.+|+
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g---------------~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDG---------------T-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTS---------------C-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCC---------------C-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 57888876788888899999998742 2 223334556799999999999 765555668899988
Q ss_pred cc
Q psy4577 82 VV 83 (384)
Q Consensus 82 ~~ 83 (384)
..
T Consensus 114 ~~ 115 (305)
T 3dr2_A 114 AD 115 (305)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.10 E-value=1.5e-07 Score=78.52 Aligned_cols=256 Identities=9% Similarity=-0.038 Sum_probs=139.5
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.+++++. +.++...++.|.+||... . .....+..+...+.++++.+++. +.++...++.|..+|
T Consensus 26 ~~d~~g~-l~v~~~~~~~v~~~~~~~-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 26 TSSEDGK-VWFTQHKANKISSLDQSG-R-------------IKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLS 89 (300)
T ss_dssp EECTTSC-EEEEETTTTEEEEECTTS-C-------------EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred eECCCCC-EEEEcCCCCeEEEECCCC-c-------------eEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEEC
Confidence 4567776 667666788999999762 1 11122333446799999999998 766666678899988
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
.. ++. ..+..... ...+.++++.+++...+ ++.+..++.. .........
T Consensus 90 ~~-g~~--------------~~~~~~~~-----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 90 KK-GGF--------------TEYPLPQP-----------DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp TT-SCE--------------EEEECSST-----------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred CC-CCe--------------EEecCCCC-----------CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 76 311 11111100 23466888888887655 3456666554 221111000
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
..... ...+.+.+ ...+.+.... ... +..+|. .+.+..
T Consensus 143 ~~~~~-~~~i~~d~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~ 180 (300)
T 2qc5_A 143 NKGSY-PAFITLGS------------------------DNALWFTENQ----NNS--IGRITN-----------TGKLEE 180 (300)
T ss_dssp STTCC-EEEEEECT------------------------TSSEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred CCCCC-ceeEEECC------------------------CCCEEEEecC----CCe--EEEECC-----------CCcEEE
Confidence 00000 00011100 1111111100 000 001111 112211
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
.....+...+.++++++++ +++++...++.|.+||.. +.... ..+..+...+.+++++++| +++++..
T Consensus 181 ~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~---------g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~ 248 (300)
T 2qc5_A 181 YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT---------GEISE-YDIPTPNARPHAITAGKNS-EIWFTEW 248 (300)
T ss_dssp EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT---------CCEEE-EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC---------CcEEE-EECCCCCCCceEEEECCCC-CEEEecc
Confidence 1111234568899999998 477776667789999872 32222 1233445678999999998 6777776
Q ss_pred CCCcEEEEecCCCCCCCccccce-eeeeccCCcEeEEEEecCCCcc
Q psy4577 318 DDHTICLWDINATPKENRVIDAK-TIFTGHTAVVELELIERLTKKA 362 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~ 362 (384)
.++.|..||.. ++ .. ..+......+.++++.++|...
T Consensus 249 ~~~~i~~~~~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~ 286 (300)
T 2qc5_A 249 GANQIGRITND-NT-------IQEYQLQTENAEPHGITFGKDGSVW 286 (300)
T ss_dssp TTTEEEEECTT-SC-------EEEEECCSTTCCCCCEEECTTSCEE
T ss_pred CCCeEEEECCC-Cc-------EEEEECCccCCccceeEeCCCCCEE
Confidence 78999999983 32 21 1122234567888998888743
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=3.9e-09 Score=99.12 Aligned_cols=101 Identities=9% Similarity=-0.059 Sum_probs=59.1
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD- 318 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~- 318 (384)
+....... +++++..+++....+ +.|..+|+. .+.......+..|...+. .|++++ ..|+....
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~--~~s~~g-~~lv~~~~~ 346 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA--------NPGPAHWRDLIPERQQVL--TVHSGS-GYLFAEYMV 346 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT--------SCCGGGCEEEECCCSSCE--EEEEET-TEEEEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC--------CCCccccEEEecCCCCEE--EEEEEC-CEEEEEEEE
Confidence 33334343 556665566665544 678888885 333222335566666565 899998 56655554
Q ss_pred CC--cEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCccc
Q psy4577 319 DH--TICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKAD 363 (384)
Q Consensus 319 Dg--~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~ 363 (384)
|+ .|++||+.++. ...+. ...+.+..+.++|+++.+.
T Consensus 347 ~g~~~l~~~d~~g~~--------~~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 347 DATARVEQFDYEGKR--------VREVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp TTEEEEEEECTTSCE--------EEEECCSSSSEEEECCCCTTCSCEE
T ss_pred CCeeEEEEEECCCCe--------eEEeecCCCceEEeeecCCCCCEEE
Confidence 54 68899987542 23332 2334566777777776544
No 201
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.08 E-value=3.5e-08 Score=84.97 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
+.+++|+|+++ +|++++. +.|.+||.. ++..+.+..+..+......++++|+|
T Consensus 307 p~~ia~spdg~-~l~v~n~-~~v~v~D~~--------t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 307 ALSMTIDQQRN-LMLTLDG-GNVNVYDIS--------QPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp CCEEEEETTTT-EEEEECS-SCEEEEECS--------SSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred eeEEEECCCCC-EEEEeCC-CeEEEEECC--------CCcceeeEEeccCCCCcEEEEecCCC
Confidence 99999999997 6777665 999999986 44334556666677778899999998
No 202
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.07 E-value=1.7e-08 Score=84.37 Aligned_cols=188 Identities=11% Similarity=-0.046 Sum_probs=113.7
Q ss_pred cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577 49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 128 (384)
Q Consensus 49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 128 (384)
..+.....+++|+|++..+++++..++.|..|+..++ ...+... ...+.+++
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~-------------~~~~~~l~ 75 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHP-------------SHHQNGHC 75 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESS-------------CSSEEEEE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECC-------------CCCcceee
Confidence 3455678899999999867788888999999998763 1222111 23467899
Q ss_pred EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577 129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV 204 (384)
Q Consensus 129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 204 (384)
++|+|..++ ++.+.+|+..+.....+...
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~----------------------------------------------- 108 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADS----------------------------------------------- 108 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECE-----------------------------------------------
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec-----------------------------------------------
Confidence 999987665 24555555432221000000
Q ss_pred ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEE----EeC-------------CC
Q psy4577 205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT----KTP-------------SS 267 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s----~s~-------------dg 267 (384)
........++.++++|+|. ++++ |+. .+
T Consensus 109 ----------------------------------~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 109 ----------------------------------FEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp ----------------------------------ETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred ----------------------------------cCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCc
Confidence 0000123466789999995 7777 321 23
Q ss_pred cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC-CCCCCCccccceeeeecc
Q psy4577 268 DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN-ATPKENRVIDAKTIFTGH 346 (384)
Q Consensus 268 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h 346 (384)
.|..++. .+ .+..+..+......++|+|++ ++|++.+.++.|++||+. .++.. .....+..+
T Consensus 154 ~l~~~~~---------~g---~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~ 216 (296)
T 3e5z_A 154 WVFRLAP---------DG---TLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE----YQGVHFTVE 216 (296)
T ss_dssp EEEEECT---------TS---CEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE----EEEEEECCS
T ss_pred EEEEECC---------CC---CEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc----CCCeEeeCC
Confidence 4444443 22 223445566678899999998 677888889999999997 33300 012222234
Q ss_pred CCcEeEEEEecCCCccc
Q psy4577 347 TAVVELELIERLTKKAD 363 (384)
Q Consensus 347 ~~~v~~~~~sp~~~~~~ 363 (384)
...+..+++.++|....
T Consensus 217 ~~~p~~i~~d~~G~l~v 233 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWA 233 (296)
T ss_dssp SSCCCSEEEBTTSCEEE
T ss_pred CCCCCeEEECCCCCEEE
Confidence 45566788888876433
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.01 E-value=3.6e-07 Score=76.23 Aligned_cols=231 Identities=7% Similarity=-0.041 Sum_probs=123.1
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
+++|++. ++++...++.|..||... ......+..+...+.++++.+++. ++++...++.|.+||
T Consensus 63 ~~~~~g~-l~v~~~~~~~i~~~~~~g--------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 63 TISSDGE-VWFTENAANKIGRITKKG--------------IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRIT 126 (299)
T ss_dssp EECTTSC-EEEEETTTTEEEEECTTS--------------CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EECCCCC-EEEeCCCCCeEEEECCCC--------------cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEEC
Confidence 5678876 677766688899998752 111222223445789999999998 776766788999998
Q ss_pred cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577 82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~ 157 (384)
. +++ +..+..... ...+..+++.+++...+ ++.+..++. +.........
T Consensus 127 ~-~g~--------------~~~~~~~~~-----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 179 (299)
T 2z2n_A 127 D-DGK--------------IREYELPNK-----------GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP 179 (299)
T ss_dssp T-TCC--------------EEEEECSST-----------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred C-CCC--------------EEEecCCCC-----------CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC
Confidence 7 321 111111100 23466888999887655 356666665 3222111000
Q ss_pred ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577 158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 237 (384)
..... ...+.+.+ ...+.+.... ... +..+|. .+.+..
T Consensus 180 ~~~~~-~~~i~~~~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~ 217 (299)
T 2z2n_A 180 TPASG-PVGITKGN------------------------DDALWFVEII----GNK--IGRITT-----------SGEITE 217 (299)
T ss_dssp STTCC-EEEEEECT------------------------TSSEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred CCCCc-ceeEEECC------------------------CCCEEEEccC----Cce--EEEECC-----------CCcEEE
Confidence 00000 00111110 0111111100 000 011111 112211
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
.....+...+.+++++++|. ++++...++.|.+||.. +... ...+..+...+.++++ ++| .++++.+
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~---------g~~~-~~~~~~~~~~~~~i~~-~~g-~l~v~~~ 284 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN---------NIIE-EYPIQIKSAEPHGICF-DGE-TIWFAME 284 (299)
T ss_dssp EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT---------TEEE-EEECSSSSCCEEEEEE-CSS-CEEEEET
T ss_pred EECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC---------CceE-EEeCCCCCCccceEEe-cCC-CEEEEec
Confidence 11222446788999999985 77776678899999972 3221 2223445567899999 887 5666654
Q ss_pred CCCcEEEEecCCCC
Q psy4577 318 DDHTICLWDINATP 331 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~ 331 (384)
.+.|..++.++.+
T Consensus 285 -~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 285 -CDKIGKLTLIKDN 297 (299)
T ss_dssp -TTEEEEEEEC---
T ss_pred -CCcEEEEEcCccc
Confidence 5678888876653
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.99 E-value=1.6e-07 Score=80.15 Aligned_cols=117 Identities=8% Similarity=0.076 Sum_probs=73.3
Q ss_pred CCCCCCceEEEeeC----CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe------
Q psy4577 3 WSPHNETILASSGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS------ 72 (384)
Q Consensus 3 fsp~~~~~lat~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s------ 72 (384)
..|++..++++-.. +++|.+.|..+ .+.+..+..-..+ . ++++|+|+.+.++..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--------------~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA--------------GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT--------------TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC--------------CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccc
Confidence 46888765555443 68999999987 4566655543444 4 999999996655442
Q ss_pred ---cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCC-cccccceeeeeeccCeeEEEEecCceeee------cceee
Q psy4577 73 ---EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYK 142 (384)
Q Consensus 73 ---~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~ 142 (384)
.+++|.+||..+.+.. ..+.... ... . .......+.|+|+|+.++ ++.|.
T Consensus 104 ~G~~~~~VsviD~~t~~v~-------------~~I~v~~g~r~---~----~g~~P~~~a~spDGk~lyVan~~~~~~Vs 163 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPT-------------ADIELPDAPRF---L----VGTYPWMTSLTPDGKTLLFYQFSPAPAVG 163 (386)
T ss_dssp EEEEEEEEEEECTTTCCEE-------------EEEEETTCCCC---C----BSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred cCCCCCEEEEEECCCCeEE-------------EEEECCCcccc---c----cCCCCceEEEcCCCCEEEEEEcCCCCeEE
Confidence 4688999999885321 1111100 000 0 011234689999998765 36788
Q ss_pred eecccccccccee
Q psy4577 143 IWKKNTPFLYDLV 155 (384)
Q Consensus 143 ~w~~~~~~~~~~~ 155 (384)
++|..+.+....+
T Consensus 164 VID~~t~~vv~tI 176 (386)
T 3sjl_D 164 VVDLEGKAFKRML 176 (386)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 9998877665444
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.97 E-value=3.7e-07 Score=78.71 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCcEEEEEe---------CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEe
Q psy4577 247 VNRARYMPQNPCVIATKT---------PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSA 316 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~ 316 (384)
...+.++|+++.++++.. .++.|.++|.. +.+ .+..+.. .....+++|+||| + +++++
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~--------t~~--vv~~i~~-g~~p~~i~~s~Dg-~~~l~v~ 336 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL--------VGQ--TSSQISL-GHDVDAISVAQDG-GPDLYAL 336 (373)
T ss_pred eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC--------CCE--EEEEEEC-CCCcCeEEECCCC-CeEEEEE
Confidence 445788999875565543 13579999985 232 3334432 2357899999999 6 67777
Q ss_pred e-CCCcEEEEecCCCC
Q psy4577 317 S-DDHTICLWDINATP 331 (384)
Q Consensus 317 s-~Dg~i~iwd~~~~~ 331 (384)
. .++.|.++|+.+++
T Consensus 337 ~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGD 352 (373)
T ss_pred cCCCCeEEEEECCCCC
Confidence 6 58999999999987
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.93 E-value=5.2e-07 Score=76.52 Aligned_cols=102 Identities=6% Similarity=-0.097 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcEEEEEeCC----------CcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEEeCCCCCCeE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPS----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~s~~~~~~l 313 (384)
.....++++|+|+ +++++..+ +.|.++|.. ++... ..+.-. ......++|+|++ +.|
T Consensus 172 ~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~--------t~~v~--~~~~~~~g~~p~~la~~~d~-~~l 239 (328)
T 3dsm_A 172 IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAE--------TFTVE--KQFKFKLGDWPSEVQLNGTR-DTL 239 (328)
T ss_dssp SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETT--------TTEEE--EEEECCTTCCCEEEEECTTS-CEE
T ss_pred CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECC--------CCeEE--EEEecCCCCCceeEEEecCC-CEE
Confidence 3457889999995 77776654 789999975 33322 223211 2367899999998 566
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
..+.. .|.+||..+++.. ....+..+......++++|++..+...
T Consensus 240 yv~~~--~v~~~d~~t~~~~-----~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVP-----VRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp EEESS--SEEEEETTCSSCC-----SSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred EEEcc--EEEEEECCCCcee-----eeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 66544 8999999887621 001112124568889999966554433
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.93 E-value=1.3e-07 Score=89.66 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577 245 GEVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD 319 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D 319 (384)
..+.++.|+|+|+ +|+..+.+ ..|++||+. .+.......+..+...+.... +|+| ..|+..+.+
T Consensus 268 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~ 336 (741)
T 1yr2_A 268 KRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVT--------NGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGD 336 (741)
T ss_dssp TCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEE--------TTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECT
T ss_pred eEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECC--------CCCCcccEEecCCCCceEEEE-eccC-CEEEEEECC
Confidence 3478899999997 55554533 379999985 221111334555555555554 4888 566666653
Q ss_pred ----CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577 320 ----HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE 356 (384)
Q Consensus 320 ----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 356 (384)
+.|.+||+.++. .. ....+..+...+.++.|.
T Consensus 337 ~~~~~~l~~~d~~~~~--~~---~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 337 GAPLKKIVRVDLSGST--PR---FDTVVPESKDNLESVGIA 372 (741)
T ss_dssp TCTTCEEEEEECSSSS--CE---EEEEECCCSSEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCc--cc---cEEEecCCCCeEEEEEEE
Confidence 459999987741 00 222333444556666666
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.91 E-value=1.4e-07 Score=80.60 Aligned_cols=110 Identities=8% Similarity=-0.055 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCCCcc--ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSS-DVLVFDYTKHPSKPDPNGECH--PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
.++.++|+|+++ .|..+..++ .|..++........ ..... ......++......++++++| +++++...++.|
T Consensus 196 ~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V 271 (343)
T 2qe8_A 196 GVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAI 271 (343)
T ss_dssp CEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTT--CCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEE
T ss_pred ccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCC--CChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeE
Confidence 468899999996 555555444 55555432100000 00000 001222444456789999998 799999999999
Q ss_pred EEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCcccccc
Q psy4577 323 CLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 323 ~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c 366 (384)
.+||..+++ ....... +....++++|.|++....+.+
T Consensus 272 ~~~d~~~G~-------~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 272 GVITSADRA-------YKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEETTTTE-------EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EEEECCCCC-------EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 999985443 2222221 245688999999887554444
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.86 E-value=4.9e-08 Score=83.68 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee------c---CCCCceEEEEeCCCCCCeEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL------R---GHQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~---~h~~~i~~~~~s~~~~~~l~s 315 (384)
..|++++|+|+| ++.|..||+|++|+.. ........++ . +|...|.+|.|.+++ .+|++
T Consensus 163 ~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~--------~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 163 QNVTSFDVTNSQ---LAVLLKDRSFQSFAWR--------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp ESEEEEEECSSE---EEEEETTSCEEEEEEE--------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred CCceEEEEcCCc---eEEEEcCCcEEEEcCC--------CccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 368999999998 4668889999999875 2221112233 2 477899999999997 68877
Q ss_pred ee
Q psy4577 316 AS 317 (384)
Q Consensus 316 ~s 317 (384)
-+
T Consensus 231 y~ 232 (388)
T 1xip_A 231 FG 232 (388)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 210
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.82 E-value=1.6e-06 Score=74.74 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec--------ccccceEEEEEccCCCcEEEEEecC--
Q psy4577 5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSVSED-- 74 (384)
Q Consensus 5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------gh~~~V~~l~~~~~~~~~l~s~s~D-- 74 (384)
++++.+++++..+++|.|+|+.+. +..+++..+.. | ...-..+...|+| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~----------p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG--i~Vs~~g~~~ 159 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPN----------PREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA--IYISALGNEE 159 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSC----------TTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC--EEEEEEEETT
T ss_pred ccCCEEEEccCCCCeEEEEECCCC----------CCCceeeeeechhhcccccC-CCcccceeECCCe--EEEEcCCCcC
Confidence 788878888888999999999642 13356666663 1 1134456778998 55576666
Q ss_pred ----CeEEEEEcccC
Q psy4577 75 ----NIMQILSVVCV 85 (384)
Q Consensus 75 ----~~i~vwd~~~~ 85 (384)
+.|.+.|..+.
T Consensus 160 g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 160 GEGPGGILMLDHYSF 174 (462)
T ss_dssp SCSCCEEEEECTTTC
T ss_pred CCCCCeEEEEECCCC
Confidence 78999998875
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.79 E-value=1.8e-07 Score=87.95 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=65.9
Q ss_pred cCCceEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTP---SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD 319 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D 319 (384)
|...+.++.|+|+|+.++++.+. +..|+++|+. .+. .....+..+....... |+++|..+++....|
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~--------~~~-~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS--------QEN-APLLTVQGDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT--------STT-CCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC--------CCC-CceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence 34446789999999855555543 3589999985 221 1233555566655555 666664555555544
Q ss_pred ---CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 320 ---HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 320 ---g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
+.|..+|+.++... ....+..|...+. .|+|++..+...
T Consensus 302 ~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 302 APNRRLVTVDAANPGPA-----HWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp CTTCEEEEEETTSCCGG-----GCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCCEEEEEeCCCCCcc-----ccEEEecCCCCEE--EEEEECCEEEEE
Confidence 68999999876511 1345555665554 888988765433
No 212
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.79 E-value=4.3e-07 Score=74.84 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=67.2
Q ss_pred ceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCCCccceeeec----CCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577 246 EVNRARYMPQNPCVIATKTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLR----GHQKEGYGLSWNPSLNGYLLSASDDH 320 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~s~~~~~~l~s~s~Dg 320 (384)
.+.++.+.|+|. ++++.+. ++.|..+|. ++.......+. ++......+++.++| .+|++...++
T Consensus 78 ~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~---------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~ 146 (276)
T 3no2_A 78 EMQTARILPDGN-ALVAWCGHPSTILEVNM---------KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATS 146 (276)
T ss_dssp EEEEEEECTTSC-EEEEEESTTEEEEEECT---------TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTT
T ss_pred cccccEECCCCC-EEEEecCCCCEEEEEeC---------CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCC
Confidence 467788899995 7777666 666766664 33322111211 222345567889999 7999999999
Q ss_pred cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
.|..||.+ ++ .+.++... ....++...+++..+.+.
T Consensus 147 ~v~~~d~~-G~-------~~w~~~~~-~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 147 EVREIAPN-GQ-------LLNSVKLS-GTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp EEEEECTT-SC-------EEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred EEEEECCC-CC-------EEEEEECC-CCccceeEcCCCCEEEEe
Confidence 99999998 77 77776643 345566777777765544
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.77 E-value=2.9e-06 Score=73.81 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred EEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEee-
Q psy4577 249 RARYMPQNPCVIATKTP---------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSAS- 317 (384)
Q Consensus 249 ~v~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s- 317 (384)
.++++|++++++++... ++.|.++|.. +.. .+..+... ....+++|+||| + ++++..
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~--------T~k--vv~~I~vg-~~P~gia~spDg-~~~lyv~n~ 390 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE--------TGE--RINKIELG-HEIDSINVSQDA-EPLLYALSA 390 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT--------TCC--EEEEEEEE-EEECEEEECCSS-SCEEEEEET
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECC--------CCe--EEEEEECC-CCcCeEEEccCC-CEEEEEEcC
Confidence 36889998766665431 3579999986 332 23333321 247899999998 5 677766
Q ss_pred CCCcEEEEecCCCCCCCccccceeee
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIF 343 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~ 343 (384)
.++.|.++|..+.+ .+.++
T Consensus 391 ~s~~VsVID~~t~k-------vv~tI 409 (426)
T 3c75_H 391 GTQTLHIYDAATGE-------ELRSV 409 (426)
T ss_dssp TTTEEEEEETTTCC-------EEEEE
T ss_pred CCCeEEEEECCCCC-------EEEEe
Confidence 59999999999998 77775
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.76 E-value=6.5e-06 Score=68.52 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=49.4
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
+...+.++++++++. ++++...++.|..||.. +... ...+......+.+++++++| .++++.. . .|
T Consensus 228 ~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~---------g~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i 293 (300)
T 2qc5_A 228 PNARPHAITAGKNSE-IWFTEWGANQIGRITND---------NTIQ-EYQLQTENAEPHGITFGKDG-SVWFALK-C-KI 293 (300)
T ss_dssp TTCCEEEEEECSTTC-EEEEETTTTEEEEECTT---------SCEE-EEECCSTTCCCCCEEECTTS-CEEEECS-S-EE
T ss_pred CCCCceEEEECCCCC-EEEeccCCCeEEEECCC---------CcEE-EEECCccCCccceeEeCCCC-CEEEEcc-C-ce
Confidence 345688999999985 77776667899999872 3222 12233344568899999998 5666655 4 77
Q ss_pred EEEecC
Q psy4577 323 CLWDIN 328 (384)
Q Consensus 323 ~iwd~~ 328 (384)
..+|.+
T Consensus 294 ~~~~p~ 299 (300)
T 2qc5_A 294 GKLNLN 299 (300)
T ss_dssp EEEEEC
T ss_pred EEeCCC
Confidence 777654
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.76 E-value=3.4e-06 Score=70.84 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeCCCcEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASDDHTIC 323 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~Dg~i~ 323 (384)
..+..++++++|. ++++...++.|.+||.. ++.. +..+..+...+.+++|+|++ + ++++...++.|.
T Consensus 226 ~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~--------~g~~--~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 226 GGADGMDFDEDNN-LLVANWGSSHIEVFGPD--------GGQP--KMRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAVW 293 (314)
T ss_dssp CEEEEEEEBTTCC-EEEEEETTTEEEEECTT--------CBSC--SEEEECSSSCEEEEEECTTS-SEEEEEETTTTEEE
T ss_pred CCCCceEECCCCC-EEEEEcCCCEEEEEcCC--------CCcE--eEEEeCCCCCceeEEECCCC-CEEEEEeCCCCeEE
Confidence 3467799999994 88877778899999974 2332 23445565789999999998 6 556666778999
Q ss_pred EEecCCC
Q psy4577 324 LWDINAT 330 (384)
Q Consensus 324 iwd~~~~ 330 (384)
.|++...
T Consensus 294 ~~~~~~~ 300 (314)
T 1pjx_A 294 KFEWQRN 300 (314)
T ss_dssp EEECSSC
T ss_pred EEeCCCC
Confidence 9998753
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.72 E-value=1.7e-05 Score=68.39 Aligned_cols=101 Identities=8% Similarity=-0.037 Sum_probs=59.9
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----------CCCceEEEEeCCCCCCeEEEee--
Q psy4577 250 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----------HQKEGYGLSWNPSLNGYLLSAS-- 317 (384)
Q Consensus 250 v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~~i~~~~~s~~~~~~l~s~s-- 317 (384)
..+.+++..+++. +..+.+.+.|+.. .....+..+.- .......++++|++.+++++..
T Consensus 218 ~~~~~~~~~~~~~-~~~~~v~vid~~~--------~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 218 PAQANKSGRIVWP-VYSGKILQADISA--------AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred ceeEecCCEEEEE-cCCceEEEEeccC--------CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 4556665444444 3678899999852 11111111110 1122445789999844444332
Q ss_pred -------CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577 318 -------DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 318 -------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.++.|.+.|..+.+ .+.++.. ......++|+|||+...-++.
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~-------vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQ-------TSSQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred CcccccCCCCeEEEEECCCCE-------EEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 23589999999987 7777752 335889999999994333333
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.70 E-value=3.1e-08 Score=85.51 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=37.7
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
+|++++.|+.|+.||..+ .+.+..+.. +.+.+..+..++. ++++++.|+.|+.||..++
T Consensus 11 ~v~~gs~dg~v~a~d~~t--------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRT--------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp EEEEEETTSEEEEEETTT--------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----
T ss_pred EEEEEcCCCEEEEEECCC--------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCC
Confidence 689999999999999886 244444444 4566666667776 6667789999999999776
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.66 E-value=1.2e-05 Score=68.77 Aligned_cols=89 Identities=4% Similarity=0.020 Sum_probs=59.7
Q ss_pred EEEcCCCCcEEEEEe-C-------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCC
Q psy4577 250 ARYMPQNPCVIATKT-P-------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDH 320 (384)
Q Consensus 250 v~~~p~~~~~l~s~s-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg 320 (384)
++++|++++++++.. . ++.+.++|+. +.+ .+..+.... ....++|+|||..++++.. .++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~--------t~~--vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--------VGQ--TSGPISNGH-DSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--------SCC--EEECCEEEE-EECEEEECCSSSCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECC--------CCe--EEEEEECCC-CcceEEECCCCCEEEEEccCCCC
Confidence 689999976666544 2 2356699986 332 233333222 5789999999844677777 699
Q ss_pred cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577 321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIER 357 (384)
Q Consensus 321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 357 (384)
+|.++|+.+.+ .+.++..... -..+++++
T Consensus 338 ~VsVID~~t~k-------vv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 338 VLDIYDAASDQ-------DQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEEESSSCE-------EEEECCCCSC-CCEEECCC
T ss_pred eEEEEECCCCc-------EEEEEECCCC-CCEEEeec
Confidence 99999999998 7777764433 33455543
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.63 E-value=1.7e-05 Score=69.38 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCC---------------CCceEEEEeCCCC
Q psy4577 246 EVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH---------------QKEGYGLSWNPSL 309 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~s~~~ 309 (384)
....++++|+|. ++++-+ .++.|+.|++. .+. +..+.++ -.....++++++|
T Consensus 324 ~P~gia~d~dG~-lyvad~~~~~~I~~~~~~--------~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 324 QPNGMTVDEDGN-FYIVDGFKGYCLRKLDIL--------DGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp SEEEEEECTTCC-EEEEETTTTCEEEEEETT--------TTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCeEEEEeCCCC-EEEEeCCCCCEEEEEECC--------CCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 467899999995 888877 89999999964 332 2233333 2357899999998
Q ss_pred CCeEEEeeCCCcEEEEec
Q psy4577 310 NGYLLSASDDHTICLWDI 327 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~ 327 (384)
.++++-..+++|+.+++
T Consensus 392 -~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 -GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEEESTTCEEEEEEE
T ss_pred -CEEEEECCCCeEEEEEe
Confidence 78888888899988765
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.48 E-value=5.7e-05 Score=62.88 Aligned_cols=102 Identities=10% Similarity=0.085 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 246 EVNRARYMPQNPCVIATKTP---------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
.++.++++|+|. ++++... .....||.+.. .+.. ..+..+....+.++|+|++..++++.
T Consensus 99 ~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~-------~g~~---~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 99 RFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFP-------DHHV---KKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECT-------TSCE---EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred CCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEEC-------CCCE---EEEeeccccccceEEcCCCCEEEEec
Confidence 367889999996 6665422 13345666531 2221 12223334568999999984355666
Q ss_pred eCCCcEEEEecC--CCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 317 SDDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 317 s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
+.++.|.+||+. ++... ....+..+..+......+++.++|.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~--~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQIS--NRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp GGGTEEEEEEECTTTCCEE--EEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred CCCCcEEEEeccCCCCccc--CcEEEEECCCCCCCCCeeEECCCCC
Confidence 778999999984 33200 0012222333334566677777664
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.46 E-value=0.00015 Score=59.27 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
..+.++++|++..++++-...+.|.++|.. +.. ....+.+. .....++.. .+ .++++....+.|..+
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~---------g~~-~~~~~~~~-~~P~gi~~d-~~-~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPA---------QPG-RRKVLEGL-QYPFAVTSY-GK-NLYYTDWKTNSVIAM 234 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT---------EEE-EEEEEECC-CSEEEEEEE-TT-EEEEEETTTTEEEEE
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecC---------CCc-eEEEecCC-CCceEEEEe-CC-EEEEEECCCCeEEEE
Confidence 467899999876677887778899999984 221 11122222 233566654 33 466666667899999
Q ss_pred ecCCCCCCCccccceeeeeccC-CcEeEEEEecCCC
Q psy4577 326 DINATPKENRVIDAKTIFTGHT-AVVELELIERLTK 360 (384)
Q Consensus 326 d~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~ 360 (384)
|..+++ .+.++.... .....+++.|++-
T Consensus 235 d~~~g~-------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISK-------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTE-------EEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCCCC-------ceEEEccccccccceeeecCccC
Confidence 999887 666664322 2367788888763
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.44 E-value=6.3e-06 Score=70.30 Aligned_cols=74 Identities=4% Similarity=-0.069 Sum_probs=51.3
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
+.+....++++++| +++++...++.|.+||.. .+....+... .+-....+++|.+++ .++++.+..+.+
T Consensus 246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~--------~G~~~~~~~~-~~~~~p~~va~~~~g-~l~v~~~~~~~~ 314 (343)
T 2qe8_A 246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSA--------DRAYKLLVTD-EKLSWTDSFNFGSDG-YLYFDCNQLHHS 314 (343)
T ss_dssp ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETT--------TTEEEEEEEC-GGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred cCCCCceEEECCCC-CEEEEccCCCeEEEEECC--------CCCEEEEEEC-CceecCCeeEECCCC-cEEEEeCccccc
Confidence 34456789999998 588888889999999973 2332222111 124568999999998 688887766666
Q ss_pred EEEec
Q psy4577 323 CLWDI 327 (384)
Q Consensus 323 ~iwd~ 327 (384)
.+|+-
T Consensus 315 ~~f~~ 319 (343)
T 2qe8_A 315 APLNA 319 (343)
T ss_dssp GGGBT
T ss_pred ccccc
Confidence 55543
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.43 E-value=7.4e-05 Score=63.13 Aligned_cols=101 Identities=9% Similarity=0.100 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 246 EVNRARYMPQNPCVIATKTPS----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
.++.++++|+|. ++++...+ +...||.+. .+.. ..+..+......++|+|++..++++.+.++.
T Consensus 135 ~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--------~g~~---~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 135 RSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--------KGKV---TKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp EEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--------TTEE---EEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--------CCcE---EEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 477899999995 66554321 234455442 1211 1222233456799999998324455566789
Q ss_pred EEEEecC--CC-CCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 322 ICLWDIN--AT-PKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 322 i~iwd~~--~~-~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
|.+||+. ++ +... ...+..+.........+++.++|.
T Consensus 203 I~~~d~~~~~Gl~~~~--~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGK--AEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp EEEEEBCTTTCCBSSC--CEEEEECTTSSSEEEEEEECTTSC
T ss_pred EEEEEcccccCCcccC--ceEEEECCCCCCCCCeeEECCCCC
Confidence 9999986 44 2100 001222222334456677766665
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.37 E-value=1.6e-05 Score=71.19 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC--CCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP--DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
....++.++|||+.+++++-.+.+|.++|+....... ...........+. -...-..++|+|+| ...++.-.|++|
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV 354 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQV 354 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEE
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcE
Confidence 4567899999999888888889999999996210000 0000001111222 12357889999999 788888899999
Q ss_pred EEEecCCCCC---CCccccceeeeeccCCc-----EeEEEEecCCCcccccccccc
Q psy4577 323 CLWDINATPK---ENRVIDAKTIFTGHTAV-----VELELIERLTKKADPVCTLEK 370 (384)
Q Consensus 323 ~iwd~~~~~~---~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~~c~~~~ 370 (384)
.+||+..... ..+....+.++..|-.+ -..+..+|||+.+.+.|-..+
T Consensus 355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 9999987210 00011155566544332 123456899999888876553
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.30 E-value=2.8e-05 Score=66.49 Aligned_cols=73 Identities=8% Similarity=-0.114 Sum_probs=48.3
Q ss_pred CCCCCCCCceEEEee---------CCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-------ccceEEEEEccCC
Q psy4577 1 VQWSPHNETILASSG---------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-------TAKISDFSWNPNE 64 (384)
Q Consensus 1 v~fsp~~~~~lat~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-------~~~V~~l~~~~~~ 64 (384)
+++|||++.++++.. .++.|.+||..+. +.+..+.-. ...-..++|+|||
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------------LPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence 468999985444432 3678999999872 333333210 1134568999999
Q ss_pred CcEEEEEe-cCCeEEEEEcccCCC
Q psy4577 65 PWVICSVS-EDNIMQILSVVCVEP 87 (384)
Q Consensus 65 ~~~l~s~s-~D~~i~vwd~~~~~~ 87 (384)
++++++.. .+++|.++|+.+.+.
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCcE
Confidence 96554443 378999999988743
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.13 E-value=0.00054 Score=55.34 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------CCceEEEEeCCCCCCeEEE
Q psy4577 247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------QKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------~~~i~~~~~s~~~~~~l~s 315 (384)
.+.+.|. ++ .+++....++.|.+.|.. ++.......+.+- ....+.|+|+|++.++++|
T Consensus 154 ~nele~~-dg-~lyvn~~~~~~V~vID~~--------tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 154 LNELEYI-NG-EVWANIWQTDCIARISAK--------DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp EEEEEEE-TT-EEEEEETTSSEEEEEETT--------TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred ceeEEEE-CC-EEEEecCCCCeEEEEECC--------CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 5677777 56 477776678899999986 4544333333321 1245899999998678888
Q ss_pred eeCCCcEEEEecCCC
Q psy4577 316 ASDDHTICLWDINAT 330 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~ 330 (384)
+...+.+.+-++...
T Consensus 224 gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 224 GKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTCSEEEEEEEEEC
T ss_pred CCCCCeEEEEEEecc
Confidence 888999999988764
No 227
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.05 E-value=0.0027 Score=52.90 Aligned_cols=100 Identities=5% Similarity=-0.149 Sum_probs=63.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577 248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327 (384)
Q Consensus 248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~ 327 (384)
+.+ +|+++.++++-+..+.|..|++... +.......+.. ......++++++| +++++....+.|.++|.
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~-------g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDST-------DKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTT-------SCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECT
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCC-------CCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECC
Confidence 445 7777667777778899999998521 11111111111 1245678999998 78888777899999997
Q ss_pred CCCCCCCccccc--eeeeeccCCcEeEEEEe---cCCCcccccc
Q psy4577 328 NATPKENRVIDA--KTIFTGHTAVVELELIE---RLTKKADPVC 366 (384)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~~h~~~v~~~~~s---p~~~~~~~~c 366 (384)
. ++ . +..+.......++++|. |++..+..+.
T Consensus 241 ~-G~-------~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 241 D-RS-------TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp T-CC-------EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred C-CC-------EEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 5 43 3 22222223558899998 8877655443
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.02 E-value=0.0003 Score=58.75 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCC-CCceEEEEeCCCCCCeEEE----eeC-
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGH-QKEGYGLSWNPSLNGYLLS----ASD- 318 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h-~~~i~~~~~s~~~~~~l~s----~s~- 318 (384)
.+.+++++++|. ++++...++.|.+|+. .+....+. ...+. ...+..++++|+| ++++| |..
T Consensus 87 ~~~gl~~d~dG~-l~v~~~~~~~v~~~~~---------~g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~ 155 (305)
T 3dr2_A 87 FTNGNAVDAQQR-LVHCEHGRRAITRSDA---------DGQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRK 155 (305)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT---------TSCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSC
T ss_pred ccceeeECCCCC-EEEEECCCCEEEEECC---------CCCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccc
Confidence 467888999995 7776666678999986 23222221 11111 1346789999999 68876 432
Q ss_pred ------------CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577 319 ------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 319 ------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
.+.|+.+|..+++ ..... .....+.++|+|+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~-------~~~~~--~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSP-------LQRMA--DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCC-------CEEEE--EESSEEEEEECTTSSEEE
T ss_pred cccccccccccCCCeEEEEcCCCCc-------EEEEe--cCCCCcceEEcCCCCEEE
Confidence 2567778776664 32222 334578899999998554
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.01 E-value=0.0017 Score=56.28 Aligned_cols=64 Identities=6% Similarity=-0.103 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------C---CceEEEEeCCCCCC
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------Q---KEGYGLSWNPSLNG 311 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------~---~~i~~~~~s~~~~~ 311 (384)
....|.++|+++.++++.-..+.|.+||+.. .+..+.+..+.-. . +.-..++++||| +
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d-------~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k 393 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN-------PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-R 393 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSS-------TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-S
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecC-------CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-C
Confidence 4678999999987777777789999999852 1222222222211 0 124789999999 6
Q ss_pred eEEEee
Q psy4577 312 YLLSAS 317 (384)
Q Consensus 312 ~l~s~s 317 (384)
+|+.+.
T Consensus 394 ~LyVaN 399 (462)
T 2ece_A 394 RVYVTN 399 (462)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666665
No 230
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.84 E-value=0.0096 Score=49.92 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-------
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD------- 318 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~------- 318 (384)
..+.++++|++..++++-+.++.|++|++.... .+....+..+ .+ ...+++.++| ++.++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-----~~~~~~~~~~---~g-P~gi~~d~~G-~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-----KGTAEVLVKI---PN-PGNIKRNADG-HFWVSSSEELDGNMH 255 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-----TTCEEEEEEC---SS-EEEEEECTTS-CEEEEEEEETTSSTT
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-----CCccceEEeC---CC-CCCeEECCCC-CEEEEecCccccccc
Confidence 356799999986466665667899999985211 1111111122 22 6789999998 56666544
Q ss_pred ---CCcEEEEecC
Q psy4577 319 ---DHTICLWDIN 328 (384)
Q Consensus 319 ---Dg~i~iwd~~ 328 (384)
.+.|..+|..
T Consensus 256 ~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 256 GRVDPKGIKFDEF 268 (322)
T ss_dssp SCEEEEEEEECTT
T ss_pred CCCccEEEEECCC
Confidence 4678888764
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.80 E-value=0.0027 Score=51.24 Aligned_cols=97 Identities=6% Similarity=-0.121 Sum_probs=63.1
Q ss_pred EcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577 252 YMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328 (384)
Q Consensus 252 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~ 328 (384)
++++++.++++- .++.|.++|.. +...........+. ...+.+.|. +| .++++...++.|.+-|..
T Consensus 112 lt~Dg~~l~vs~-gs~~l~viD~~--------t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~ 180 (266)
T 2iwa_A 112 LATDGKILYGSD-GTSILYEIDPH--------TFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAK 180 (266)
T ss_dssp EEECSSSEEEEC-SSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETT
T ss_pred EEECCCEEEEEC-CCCeEEEEECC--------CCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECC
Confidence 456776566654 68899999975 22222211222111 236788888 66 577777678999999999
Q ss_pred CCCCCCccccceeeeecc-------------CCcEeEEEEecCCCcccccc
Q psy4577 329 ATPKENRVIDAKTIFTGH-------------TAVVELELIERLTKKADPVC 366 (384)
Q Consensus 329 ~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~~~~~c 366 (384)
+++ .+..+.-. ....+.++|+|+++.+...+
T Consensus 181 tg~-------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 181 DGT-------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TCC-------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCc-------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 998 66666421 13568999999998655443
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.80 E-value=0.0024 Score=51.02 Aligned_cols=67 Identities=6% Similarity=-0.018 Sum_probs=41.2
Q ss_pred CCCCCCCceEEEeeCCC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 2 QWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
.|+ ++ .++.+.+.+| +|+++|+.+. +++....-. .........+++..+.+..-.++.+.+
T Consensus 49 ~~~-~~-~LyestG~~g~S~v~~vD~~Tg--------------kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 49 FYR-NG-YFYESTGLNGRSSIRKVDIESG--------------KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEE-TT-EEEEEEEETTEEEEEEECTTTC--------------CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEE-CC-EEEEECCCCCCceEEEEECCCC--------------cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 455 44 4777777766 8999999872 344433321 233333233345546555567899999
Q ss_pred EEcccC
Q psy4577 80 LSVVCV 85 (384)
Q Consensus 80 wd~~~~ 85 (384)
+|..+.
T Consensus 112 ~D~~t~ 117 (262)
T 3nol_A 112 WNIRNL 117 (262)
T ss_dssp EETTTC
T ss_pred EECccC
Confidence 999875
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.79 E-value=0.0026 Score=50.83 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=59.6
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577 254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
++++.++++ ..++.|.++|.. +............. ..++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus 134 ~dg~~L~~S-dGs~~i~~iDp~--------T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 134 HNDQYLIMS-DGTPVLRFLDPE--------SLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp ECSSCEEEC-CSSSEEEEECTT--------TCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTC
T ss_pred cCCCEEEEE-CCCCeEEEEcCC--------CCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCC
Confidence 566545555 446789999975 33222222222122 234567776 66 56666667889999999999
Q ss_pred CCCCccccceeeeecc------------CCcEeEEEEecCCCcccccc
Q psy4577 331 PKENRVIDAKTIFTGH------------TAVVELELIERLTKKADPVC 366 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~h------------~~~v~~~~~sp~~~~~~~~c 366 (384)
+ .+..+.-. ....+.++|+|+++.+...|
T Consensus 203 ~-------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 203 K-------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp B-------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred c-------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7 55554321 13568999999988766554
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.76 E-value=0.0051 Score=49.23 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=39.3
Q ss_pred CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEE-ecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 8 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 8 ~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
..++++.+.+|.|+++|+.+. +.+.. +.. .....-..+++..+.+..-.++.+.++|..+.
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tg--------------kv~~~~l~~---~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESA--------------QPVWMERLG---NIFAEGLASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCS--------------SCSEEEECT---TCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred CEEEEEcCCCCEEEEEECCCC--------------cEEeEECCC---CcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence 457888888999999999873 22222 222 23332223344446666667899999999875
No 235
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.60 E-value=0.011 Score=55.99 Aligned_cols=75 Identities=8% Similarity=0.132 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCCCccc--eeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577 246 EVNRARYMPQNPCVIATKTP--SSDVLVFDYTKHPSKPDPNGECHP--DLRLRGHQKEGYGLSWNPSLNGYLLSASDD-- 319 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-- 319 (384)
....+.|+|+|+.++++... ...|+++|+. .+.... .....+......++.|+..+ .+++....+
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~--------~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a 342 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR--------KGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGA 342 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESS--------SCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTC
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECC--------CCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCC
Confidence 34678999999755554433 3457777875 221112 22223344566677766554 455555444
Q ss_pred --CcEEEEecCC
Q psy4577 320 --HTICLWDINA 329 (384)
Q Consensus 320 --g~i~iwd~~~ 329 (384)
..|..+|+.+
T Consensus 343 ~~~~L~~~d~~~ 354 (751)
T 2xe4_A 343 VNHKLLIAPRGQ 354 (751)
T ss_dssp TTCEEEEEETTS
T ss_pred CCcEEEEEcCCC
Confidence 3666667654
No 236
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.59 E-value=0.03 Score=48.32 Aligned_cols=75 Identities=4% Similarity=-0.152 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
...+.|+++|++.+++++-+..+.|..+|+. +.... ..+.........|++. .+ .++.+-...+.|..
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~-~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~ 313 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHRK-AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTT---------SCSCE-EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC---------CCeeE-EEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEE
Confidence 3468999998776677777778889999974 32221 1222233456778883 33 57777777889999
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
+|..+++
T Consensus 314 ~~~~~G~ 320 (386)
T 3v65_B 314 ANKFTGK 320 (386)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9976665
No 237
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.57 E-value=0.012 Score=47.16 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CC------CceEEEEeCCCCCCeEEEeeC
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQ------KEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~------~~i~~~~~s~~~~~~l~s~s~ 318 (384)
.+.+++++|...++++.......+.++|. .+.......+.. .. ..--.|+|.++| +++++ ++
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~---------~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE 242 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTL---------VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SE 242 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECT---------TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ET
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcC---------CCCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cC
Confidence 46889999977678888888888999997 455444445542 11 256789999998 55555 66
Q ss_pred CCcEEEEec
Q psy4577 319 DHTICLWDI 327 (384)
Q Consensus 319 Dg~i~iwd~ 327 (384)
-+.++.+.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 666666643
No 238
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.55 E-value=0.031 Score=47.47 Aligned_cols=74 Identities=4% Similarity=-0.131 Sum_probs=49.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
..+.|+++|++..++.+-+..+.|..+|+. +.... ..+...-.....|++. .+ .++.+-...+.|...
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~d---------G~~~~-~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHRK-AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSA 271 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCE-EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEE
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCC---------CCceE-EEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEE
Confidence 357899998776677777778889999984 32211 1222233456778873 44 566776678899999
Q ss_pred ecCCCC
Q psy4577 326 DINATP 331 (384)
Q Consensus 326 d~~~~~ 331 (384)
|..+++
T Consensus 272 ~~~~G~ 277 (349)
T 3v64_C 272 NKFTGK 277 (349)
T ss_dssp ETTTCC
T ss_pred EccCCC
Confidence 866665
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.48 E-value=0.0084 Score=55.97 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=52.7
Q ss_pred CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-
Q psy4577 267 SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG- 345 (384)
Q Consensus 267 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~- 345 (384)
|.|..||+. +++. +-.+. +..++.+..+...+ .+++.++.||.+++||.++++ .+..+.-
T Consensus 457 g~l~A~D~~--------tG~~--~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~-------~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPV--------AQKA--AWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGE-------KLWEAPTG 517 (677)
T ss_dssp EEEEEEETT--------TTEE--EEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEECS
T ss_pred cEEEEEeCC--------CCcE--EeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCc-------eeeeeeCC
Confidence 678888875 3432 22222 22344445556666 588889999999999999998 8777763
Q ss_pred cCCcEeEEEEecCCCccccc
Q psy4577 346 HTAVVELELIERLTKKADPV 365 (384)
Q Consensus 346 h~~~v~~~~~sp~~~~~~~~ 365 (384)
+.....-+.|.++|+....+
T Consensus 518 ~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 518 TGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SCCCSCCEEEEETTEEEEEE
T ss_pred CCcccCCEEEEeCCEEEEEE
Confidence 32233446677888765554
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.47 E-value=0.029 Score=45.42 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 246 EVNRARYMPQNPCVIATKTP--SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
....++++|++.+++++... .+.|..+++. +..... .....-.....++++|++..++++-...+.|.
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d---------g~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD---------GTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETT---------SCCCEE-EECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecC---------CCCcEE-EEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 45789999965556666543 4688888873 322111 11122245789999998634556666778999
Q ss_pred EEecCCC
Q psy4577 324 LWDINAT 330 (384)
Q Consensus 324 iwd~~~~ 330 (384)
++|....
T Consensus 193 ~~~~~g~ 199 (267)
T 1npe_A 193 CLNPAQP 199 (267)
T ss_dssp EEETTEE
T ss_pred EEecCCC
Confidence 9999764
No 241
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.45 E-value=0.021 Score=49.72 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=41.9
Q ss_pred CCCCCCCCceEEEee-C-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577 1 VQWSPHNETILASSG-T-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 78 (384)
Q Consensus 1 v~fsp~~~~~lat~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~ 78 (384)
+.|+|||+. |.++. . +++|.+.|+.+ .+++..+.-- . +....|++...+++.+.||++.
T Consensus 182 ~~~spDGk~-lyV~n~~~~~~VsVID~~t--------------~kvv~~I~v~--g--~~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 182 NALTPDNKN-LLFYQFSPAPAVGVVDLEG--------------KTFDRMLDVP--D--CYHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp SEECTTSSE-EEEEECSSSCEEEEEETTT--------------TEEEEEEECC--S--EEEEEEEETTEEEEEETTSSEE
T ss_pred EEEcCCCCE-EEEEecCCCCeEEEEECCC--------------CeEEEEEEcC--C--ceeeccCCCcEEEEEcCCCCEE
Confidence 468999985 55544 3 68899999987 3555444321 1 1344566554666777888888
Q ss_pred EEEccc
Q psy4577 79 ILSVVC 84 (384)
Q Consensus 79 vwd~~~ 84 (384)
+.+...
T Consensus 243 ~V~~~~ 248 (426)
T 3c75_H 243 RVDFAD 248 (426)
T ss_dssp EEECCT
T ss_pred EEECCC
Confidence 777744
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.44 E-value=0.0033 Score=56.51 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce-----EEEEeCCCCCCeEEEeeC-
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG-----YGLSWNPSLNGYLLSASD- 318 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i-----~~~~~s~~~~~~l~s~s~- 318 (384)
.....++|+|+| +.+++.-.|+.|.+||+........-......+..+.-|-.+- .++..+||| ++|++...
T Consensus 331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~ 408 (595)
T 1fwx_A 331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKF 408 (595)
T ss_dssp SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESC
T ss_pred CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCC
Confidence 346789999999 7888889999999999862000000000122344554444322 234668999 78877653
Q ss_pred C-CcE-----------EEEecCCCC
Q psy4577 319 D-HTI-----------CLWDINATP 331 (384)
Q Consensus 319 D-g~i-----------~iwd~~~~~ 331 (384)
. .++ .++|+..++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 2 344 889996543
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.44 E-value=0.026 Score=52.83 Aligned_cols=82 Identities=7% Similarity=-0.024 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577 266 SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 345 (384)
Q Consensus 266 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 345 (384)
+|.|+.||+. +++. +-.+..+. ++..-.+...+ .+++.|+.||.|+.||.++++ .+..++.
T Consensus 454 ~g~l~A~D~~--------tG~~--~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~-------~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPV--------KQQA--AWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE-------KLWEQPA 514 (689)
T ss_dssp EEEEEEEETT--------TTEE--EEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEEC
T ss_pred ceeEEEEECC--------CCCe--EeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCc-------cceeeeC
Confidence 4778888886 4432 22333232 23333455566 689999999999999999998 8877764
Q ss_pred cCCc-EeEEEEecCCCcccccc
Q psy4577 346 HTAV-VELELIERLTKKADPVC 366 (384)
Q Consensus 346 h~~~-v~~~~~sp~~~~~~~~c 366 (384)
..+. ..-+.|..+|++..++.
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEE
Confidence 3322 24567788888665553
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.29 E-value=0.02 Score=47.84 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
...+.++...+++. +.+ ++.++.|..+|. .+.. +..+......+..+...+++ .|..++.+|.|.
T Consensus 214 ~~~~~~~~~~~~g~-l~v-~t~~~gl~~~~~---------~g~~--~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~ 278 (330)
T 3hxj_A 214 YWTVTRPAISEDGT-IYV-TSLDGHLYAINP---------DGTE--KWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLY 278 (330)
T ss_dssp SCCCSCCEECTTSC-EEE-EETTTEEEEECT---------TSCE--EEEEECSSCCCSCCEECTTS--CEEEECTTCEEE
T ss_pred CcceeceEECCCCe-EEE-EcCCCeEEEECC---------CCCE--eEEeeCCCCccccceEcCCC--eEEEecCCCCEE
Confidence 35577788888873 444 566778888874 2322 22333333334455666665 566777888999
Q ss_pred EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577 324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
.+|. +++ .+..+......+.++...+++..
T Consensus 279 ~~d~-~g~-------~~~~~~~~~~~~~~~~~d~~g~l 308 (330)
T 3hxj_A 279 AINP-DGT-------EKWNFETGSWIIATPVIDENGTI 308 (330)
T ss_dssp EECT-TSC-------EEEEEECSSCCCSCCEECTTCCE
T ss_pred EECC-CCc-------EEEEEEcCCccccceEEcCCCEE
Confidence 9996 454 44444433444555555555553
No 245
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.27 E-value=0.079 Score=45.89 Aligned_cols=76 Identities=8% Similarity=-0.079 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc-eeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP-DLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
...+.|+++|++.+++.+-+..+.|..+|+. +.... +....+.-....+|+...+ .++.+-...+.|.
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~~V~ 314 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF 314 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCCCEEEEECSSTTSSEEEEEEETT--EEEEEESSSCSEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCC---------CCccEEEEeCCCCCCCCEEEEEeCC--EEEEecCCCCeEE
Confidence 4578999998876677776777889999984 32222 2121122234567777333 5777777788999
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
.+|..+++
T Consensus 315 ~~~~~~G~ 322 (400)
T 3p5b_L 315 SANRLTGS 322 (400)
T ss_dssp EEESSSCC
T ss_pred EEEcCCCC
Confidence 99977776
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.26 E-value=0.047 Score=43.19 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CCCCCCCceEEEeeCCC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577 2 QWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 79 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v 79 (384)
.|++ + .++.+.+.+| +|+++|+.+ .+++....-. .........+.+..+....-.++.+.+
T Consensus 27 ~~~~-~-~LyestG~~g~S~v~~vD~~t--------------gkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 27 FYLR-G-HLYESTGETGRSSVRKVDLET--------------GRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEET-T-EEEEEECCTTSCEEEEEETTT--------------CCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEC-C-EEEEECCCCCCceEEEEECCC--------------CCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 3554 3 4667766654 899999987 2444333221 122222223334546656667899999
Q ss_pred EEcccC
Q psy4577 80 LSVVCV 85 (384)
Q Consensus 80 wd~~~~ 85 (384)
+|..+.
T Consensus 90 ~D~~tl 95 (243)
T 3mbr_X 90 YDLATL 95 (243)
T ss_dssp EETTTT
T ss_pred EECCcC
Confidence 999775
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.24 E-value=0.032 Score=44.68 Aligned_cols=93 Identities=6% Similarity=-0.107 Sum_probs=59.0
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577 254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWNPSLNGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
++++.++++ ..++.|.++|.. +...........+.. .++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus 143 ~Dg~~L~vS-dGs~~l~~iDp~--------T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 143 YWNGKLVRS-DGGTMLTFHEPD--------GFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp EETTEEEEE-CSSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTC
T ss_pred cCCCEEEEE-CCCCEEEEEcCC--------CCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCC
Confidence 456545555 458899999975 332222222222222 45667776 66 56666667889999999999
Q ss_pred CCCCccccceeeeec-------------cCCcEeEEEEecCCCcccc
Q psy4577 331 PKENRVIDAKTIFTG-------------HTAVVELELIERLTKKADP 364 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~~~~ 364 (384)
+ .+..+.- -....+.++|.|++..+..
T Consensus 212 ~-------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 212 T-------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp B-------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred c-------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 7 5555432 1135789999998875443
No 248
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.23 E-value=0.075 Score=44.93 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCC-CcE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDD-HTI 322 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~D-g~i 322 (384)
..-+.++|+|+++.++++-+..+.|+.|++.. .+.......+ ...+..-.+++.+ +| ++.+++..+ +.|
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-------~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v 291 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHA-------NWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPNGMRI 291 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESCHHHH
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECC-------CCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEecCCceEE
Confidence 34689999999987777777889999999853 2222222233 2235567899999 58 677766644 455
Q ss_pred EEEecCCCCCCCccccceeeee---ccCCcEeEEEEecCCCcccccccccccceeeEEEEEee
Q psy4577 323 CLWDINATPKENRVIDAKTIFT---GHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMF 382 (384)
Q Consensus 323 ~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~~~~~~ 382 (384)
..|+..... +. .+..++ +-...|+.+ |..+|+.+.++..... .+++-.+-++|
T Consensus 292 ~~~~P~~~~--~s---~v~rI~~~~~~~~~v~~v-~~ddG~~l~~~T~a~~-~~g~L~iGsv~ 347 (355)
T 3sre_A 292 FFYDAENPP--GS---EVLRIQDILSEEPKVTVV-YAENGTVLQGSTVAAV-YKGKLLIGTVF 347 (355)
T ss_dssp HSCCTTSCC--CE---EEEEEECTTSSSCEEEEE-EEECSSSCCSEEEEEE-ETTEEEEEESS
T ss_pred EEECCCCCC--CC---EEEEEEccCCCCcEEEEE-EEcCCCEEEeeEEEEE-ECCEEEEEEcC
Confidence 555554211 11 222222 123445555 7779998776655543 34444444544
No 249
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.19 E-value=0.0041 Score=58.22 Aligned_cols=75 Identities=8% Similarity=-0.072 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
..+.|+++|++.+++++-+..+.|.++++. +... .+....+.-.....|++..+ +++++....++|..
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~d---------G~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFS 609 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSS---------SSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccC---------CCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEE
Confidence 457899999876688887778899999984 2211 11111111123345566544 46777777889999
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
+|..+++
T Consensus 610 ~d~~~G~ 616 (699)
T 1n7d_A 610 ANRLTGS 616 (699)
T ss_dssp EETTTEE
T ss_pred EEccCCC
Confidence 9987665
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.05 E-value=0.0088 Score=50.13 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=55.6
Q ss_pred EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577 237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~ 316 (384)
..........+.++...+++ .+..++ +.|..+| . ++.. +.........+.++...++| .|..+
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g--~l~v~t--~~l~~~d-~--------~g~~--~~~~~~~~~~~~~~~~~~~g--~l~v~ 231 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDG--TIYFGS--DKVYAIN-P--------DGTE--KWNFYAGYWTVTRPAISEDG--TIYVT 231 (330)
T ss_dssp EEEEECSSCCCSCCEECTTC--CEEEES--SSEEEEC-T--------TSCE--EEEECCSSCCCSCCEECTTS--CEEEE
T ss_pred eEEEecCCCceeeeEEcCCC--EEEEEe--CEEEEEC-C--------CCcE--EEEEccCCcceeceEECCCC--eEEEE
Confidence 33343344455555555543 777776 6677777 3 3432 33444444567777777775 34556
Q ss_pred eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577 317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
+.++.|..+| .+++ .+..+......+..+...+++..
T Consensus 232 t~~~gl~~~~-~~g~-------~~~~~~~~~~~~~~~~~~~~g~l 268 (330)
T 3hxj_A 232 SLDGHLYAIN-PDGT-------EKWRFKTGKRIESSPVIGNTDTI 268 (330)
T ss_dssp ETTTEEEEEC-TTSC-------EEEEEECSSCCCSCCEECTTSCE
T ss_pred cCCCeEEEEC-CCCC-------EeEEeeCCCCccccceEcCCCeE
Confidence 6678888774 5454 66555544444555555444443
No 251
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.98 E-value=0.26 Score=46.70 Aligned_cols=75 Identities=8% Similarity=-0.052 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC--CCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
...++|++++.+.+++++-...+.|..+++. +..... .+.. .-....+|++..+ +++++-...++|
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d---------G~~~~~-v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I 625 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKT-ILEDEKRLAHPFSLAVFED--KVFWTDIINEAI 625 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEE-EEECTTTTSSEEEEEEETT--EEEEEETTTTEE
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecC---------CCceEE-EecCCCccCCCCEEEEeCC--EEEEEECCCCEE
Confidence 4678999998776677776677889999984 332222 2222 2224457776433 466666677889
Q ss_pred EEEecCCCC
Q psy4577 323 CLWDINATP 331 (384)
Q Consensus 323 ~iwd~~~~~ 331 (384)
...|..+++
T Consensus 626 ~~~dk~tG~ 634 (791)
T 3m0c_C 626 FSANRLTGS 634 (791)
T ss_dssp EEEETTTCC
T ss_pred EEEeCCCCc
Confidence 888887775
No 252
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.96 E-value=0.11 Score=48.42 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=41.6
Q ss_pred CCC-CCCceEEEeeCCC-----------eEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEccCCCcEEE
Q psy4577 3 WSP-HNETILASSGTDR-----------RLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWVIC 69 (384)
Q Consensus 3 fsp-~~~~~lat~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~~l~ 69 (384)
+.| ++. +++.|+.+. .+.+||..+.. ...+..+ ..+.....++++.+++. +++
T Consensus 193 v~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------------w~~~~~~~~~~~~~~~~~~~~~~g~-lyv 258 (656)
T 1k3i_A 193 IEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------------VSDRTVTVTKHDMFCPGISMDGNGQ-IVV 258 (656)
T ss_dssp EETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCC------------BCCCEEEECSCCCSSCEEEECTTSC-EEE
T ss_pred EEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCc------------EEeCcccCCCCCCccccccCCCCCC-EEE
Confidence 345 454 777776543 57788887622 1122222 22333344577888888 777
Q ss_pred EEec-CCeEEEEEcccC
Q psy4577 70 SVSE-DNIMQILSVVCV 85 (384)
Q Consensus 70 s~s~-D~~i~vwd~~~~ 85 (384)
.|+. +..+.+||+.+.
T Consensus 259 ~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 259 TGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp ECSSSTTCEEEEEGGGT
T ss_pred eCCCCCCceEEecCcCC
Confidence 7774 468999998763
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.88 E-value=0.15 Score=42.44 Aligned_cols=76 Identities=8% Similarity=-0.095 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
...+.++++|++..++.+-+..+.|..+|+. +... .+......-.....+++.. + .++++-...++|.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d---------g~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIF 232 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC---------CCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEE
Confidence 4578999999876677777778899999984 3221 1212111223456777753 4 5777777788999
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
.+|..+++
T Consensus 233 ~~~~~~g~ 240 (316)
T 1ijq_A 233 SANRLTGS 240 (316)
T ss_dssp EEETTTCC
T ss_pred EEeCCCCc
Confidence 99987775
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.81 E-value=0.13 Score=40.65 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=56.9
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577 254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDINAT 330 (384)
Q Consensus 254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~ 330 (384)
++++.+++| ..++.|.++|.. +...........+. ..++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus 112 ~dg~~L~vS-dgs~~l~~iDp~--------t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 112 SDDSHLYMS-DGTAVIRKLDPD--------TLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp ECSSCEEEE-CSSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTC
T ss_pred eCCCEEEEE-CCCCeEEEEeCC--------CCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCC
Confidence 456556666 457889999975 22222222222222 245566665 55 56666656789999999999
Q ss_pred CCCCccccceeeeec-------------cCCcEeEEEEecCCCccc
Q psy4577 331 PKENRVIDAKTIFTG-------------HTAVVELELIERLTKKAD 363 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~~~ 363 (384)
+ .+..+.- -....+.++|+|++..+.
T Consensus 181 ~-------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 181 K-------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp B-------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred C-------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 7 5554431 113568999999887544
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.052 Score=47.56 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=48.5
Q ss_pred eEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeCCCcEEE
Q psy4577 247 VNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASDDHTICL 324 (384)
Q Consensus 247 v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~Dg~i~i 324 (384)
...++++| ++ +++++-..++.|+.++.. .+....+.... ....-..++|+|+| + ++++-...+.|..
T Consensus 228 p~giavdp~~g-~lyv~d~~~~~V~~~~~~--------~~~~~~~~~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 228 CNGAETHPING-ELYFNSWNAGQVFRYDFT--------TQETTPLFTIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILR 296 (430)
T ss_dssp CCCEEECTTTC-CEEEEETTTTEEEEEETT--------TTEEEEEEECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCC-EEEEEECCCCEEEEEECC--------CCcEEEEEEcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEE
Confidence 45678899 55 577777778889999974 22211222222 22356789999998 6 5666667889999
Q ss_pred EecCC
Q psy4577 325 WDINA 329 (384)
Q Consensus 325 wd~~~ 329 (384)
++...
T Consensus 297 ~~~d~ 301 (430)
T 3tc9_A 297 SDYDW 301 (430)
T ss_dssp EEEET
T ss_pred EeCCc
Confidence 88764
No 256
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.75 E-value=0.25 Score=43.19 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC---------------CCceEEEEe-------
Q psy4577 248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH---------------QKEGYGLSW------- 305 (384)
Q Consensus 248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~------- 305 (384)
..++|+|++..++++-...+.|+.+++.... +.......+.+. -..-..+++
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~------~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRET------GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTT------CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC------cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 3699999996577776778899998874211 111101111111 123567898
Q ss_pred --CCCCCCeEEEeeCCCcEEEEec
Q psy4577 306 --NPSLNGYLLSASDDHTICLWDI 327 (384)
Q Consensus 306 --s~~~~~~l~s~s~Dg~i~iwd~ 327 (384)
.++| .++++-...++|+.++.
T Consensus 350 ~dd~~g-~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 350 GEEDEY-DFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TSSCCE-EEEEEETTTTEEEEECT
T ss_pred ccCCCC-cEEEEECCCCEEEEECC
Confidence 7777 57777777789999885
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.74 E-value=0.2 Score=41.76 Aligned_cols=70 Identities=4% Similarity=-0.104 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCCCCCCCCccceeeecCC----CCceEEEEeCCCCCCe
Q psy4577 247 VNRARYMPQNPCVIATKTP----------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----QKEGYGLSWNPSLNGY 312 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~s~~~~~~ 312 (384)
...+++.++|. ++++... .+.|..+|. .+.. +..+... -..++++++ .++ .+
T Consensus 231 P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~---------~G~~--~~~~~~~~g~~~~~~~~~~~-~~g-~L 296 (322)
T 2fp8_A 231 PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDE---------FGNI--LEVIPLPPPFAGEHFEQIQE-HDG-LL 296 (322)
T ss_dssp EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECT---------TSCE--EEEEECCTTTTTSCCCEEEE-ETT-EE
T ss_pred CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECC---------CCCE--EEEEECCCCCccccceEEEE-eCC-EE
Confidence 56678888884 5555433 345666664 2322 2222221 234666666 355 57
Q ss_pred EEEeeCCCcEEEEecCCC
Q psy4577 313 LLSASDDHTICLWDINAT 330 (384)
Q Consensus 313 l~s~s~Dg~i~iwd~~~~ 330 (384)
+++....+.|..+++...
T Consensus 297 ~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEECSSCSEEEEEEC---
T ss_pred EEeecCCCceEEEecccc
Confidence 777777889999988643
No 258
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.63 E-value=0.24 Score=41.30 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
..+.|+++|++..++.+=+..+.|..+|+. +..... .+.+.......+++..+ .++.+-...+.|..+
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~~-~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNRQA-VVKGSLPHPFALTLFED--ILYWTDWSTHSILAC 234 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEE-EECSCCSCEEEEEEETT--EEEEEETTTTEEEEE
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCC---------CCceEE-EecCCCCCceEEEEeCC--EEEEEecCCCeEEEE
Confidence 357899999776677777778899999984 322211 22223345667777543 467776677899999
Q ss_pred ecCCCC
Q psy4577 326 DINATP 331 (384)
Q Consensus 326 d~~~~~ 331 (384)
|..+++
T Consensus 235 ~~~~G~ 240 (318)
T 3sov_A 235 NKYTGE 240 (318)
T ss_dssp ETTTCC
T ss_pred ECCCCC
Confidence 997776
No 259
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.35 Score=42.85 Aligned_cols=30 Identities=10% Similarity=-0.059 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYT 275 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~ 275 (384)
....|+|+|++..++++-+....|+.++..
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 346899999996456666777889987764
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.50 E-value=0.014 Score=55.34 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=62.6
Q ss_pred ceEEEEEc-CCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCC-CccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577 246 EVNRARYM-PQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNG-ECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD 319 (384)
Q Consensus 246 ~v~~v~~~-p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D 319 (384)
.+...+|| |+|+.+..+.+.+| .|+++|+. .+ ...+ ..+.. ....++|+||| +.|+-...|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~--------~g~~~l~-~~~~~---~~~~~~WspDg-~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS--------DPSQTIA-DKVSG---TNGEIVWGPDH-TSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT--------CTTCCCC-CCEEE---ECSCCEECSST-TEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC--------CCCEeCC-ccccC---ceeeEEEecCC-CEEEEEEEC
Confidence 57789999 99974444444333 49999986 33 2111 01111 13478999998 566666655
Q ss_pred -----CcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCcccccc
Q psy4577 320 -----HTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKADPVC 366 (384)
Q Consensus 320 -----g~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~c 366 (384)
..|+++++.+++.. ....+. .+......+.|||||+.++-..
T Consensus 242 ~~~~~~~v~~~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp TTCCEEEEEEEETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCEEEEEECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 36888888775410 122222 2334567889999999766544
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.35 E-value=0.099 Score=41.84 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=74.0
Q ss_pred ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
+-...+..++|+|++..++++...++.|...|. ++.......+.+. ...-.|++.+++ .++++.-.++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~---------~g~v~~~i~l~g~-~D~EGIa~~~~g-~~~vs~E~~~~ 92 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTT---------NGDLIRTIPLDFV-KDLETIEYIGDN-QFVISDERDYA 92 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEET---------TCCEEEEEECSSC-SSEEEEEECSTT-EEEEEETTTTE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeC---------CCCEEEEEecCCC-CChHHeEEeCCC-EEEEEECCCCc
Confidence 444679999999987667777888888888887 3333232233433 457789999987 67677667789
Q ss_pred EEEEecCCCCCCCcccccee-ee--eccCCcEeEEEEecCCCccccccc
Q psy4577 322 ICLWDINATPKENRVIDAKT-IF--TGHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 322 i~iwd~~~~~~~~~~~~~~~-~~--~~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
+.++++...... ....... .+ ...+.....++|.|.+..+..++.
T Consensus 93 l~~~~v~~~~~i-~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 93 IYVISLTPNSEV-KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp EEEEEECTTCCE-EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCee-eeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 999998765410 0000110 01 113445789999999876655543
No 262
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.25 E-value=0.0081 Score=51.26 Aligned_cols=69 Identities=6% Similarity=-0.116 Sum_probs=50.0
Q ss_pred CCCCCCCceEEEee---C-----CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe-
Q psy4577 2 QWSPHNETILASSG---T-----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS- 72 (384)
Q Consensus 2 ~fsp~~~~~lat~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s- 72 (384)
+|+|++..++++.. . ++.+.++|+.+ .+.+..+.... ...+|+|+|+|+.++++..
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--------------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------------GQTSGPISNGH-DSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------------CCEEECCEEEE-EECEEEECCSSSCEEEEEET
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCC--------------CeEEEEEECCC-CcceEEECCCCCEEEEEccC
Confidence 47889886555433 2 23466999987 34455444332 5889999999987777887
Q ss_pred cCCeEEEEEcccC
Q psy4577 73 EDNIMQILSVVCV 85 (384)
Q Consensus 73 ~D~~i~vwd~~~~ 85 (384)
.+++|.++|+.+.
T Consensus 335 ~~~~VsVID~~t~ 347 (368)
T 1mda_H 335 GTEVLDIYDAASD 347 (368)
T ss_dssp TTTEEEEEESSSC
T ss_pred CCCeEEEEECCCC
Confidence 6999999999886
No 263
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.17 E-value=0.08 Score=45.42 Aligned_cols=106 Identities=8% Similarity=0.094 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC--CccceeeecC------CCCceEEEEeCCCCC--CeEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG--ECHPDLRLRG------HQKEGYGLSWNPSLN--GYLLS 315 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~------h~~~i~~~~~s~~~~--~~l~s 315 (384)
.|..+..+|+|. +||..+ +..|.|-.+..........+ .......+.- ...+|..+.|||-+. ..|++
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 577899999995 888765 66899998873222211101 0001112211 246899999999542 38999
Q ss_pred eeCCCcEEEEecCCCCCCCccccceeeee---------ccCCcEeEEEEecCC
Q psy4577 316 ASDDHTICLWDINATPKENRVIDAKTIFT---------GHTAVVELELIERLT 359 (384)
Q Consensus 316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~sp~~ 359 (384)
-..|++|++||+...... |. .+. .+-..|.+++|.+++
T Consensus 145 LtsD~~Ir~yDl~~s~~~-----P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEK-----PI-VLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EETTSCEEEEETTCTTSC-----CE-EESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred EecCCEEEEEEcccCCCC-----Cc-chhccccccCCCcccceEEEEEEcCCC
Confidence 999999999999974321 22 221 122567888888843
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.76 E-value=1 Score=41.90 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=52.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577 265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344 (384)
Q Consensus 265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 344 (384)
.+|.|+-||+. ++.. +-....+ .+.....+...+ .+++.++.||.++.||.++++ .+..+.
T Consensus 436 ~~g~l~A~D~~--------tG~~--~W~~~~~-~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~-------~l~~~~ 496 (668)
T 1kv9_A 436 VSGALLAWDPV--------KQKA--AWKVPYP-THWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGE-------ALWQFE 496 (668)
T ss_dssp CEEEEEEEETT--------TTEE--EEEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEE
T ss_pred ccceEEEEeCC--------CCcE--EEEccCC-CCCcCceeEeCC-CEEEEECCcccchhhhhhcCh-------hheEec
Confidence 45789999986 4432 2222211 222223333455 588889999999999999998 776665
Q ss_pred ccCCcE-eEEEEecCCCcccccccc
Q psy4577 345 GHTAVV-ELELIERLTKKADPVCTL 368 (384)
Q Consensus 345 ~h~~~v-~~~~~sp~~~~~~~~c~~ 368 (384)
-..... .-+.+..+|+...++|..
T Consensus 497 ~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 497 AQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCcccCceEEEECCEEEEEEEec
Confidence 432211 234556777776666664
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.72 E-value=0.79 Score=38.69 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
..+.++++|.+..++.+-..+ +.|..+++. +..... .+...-...+.|+++|++.+++++-+..+.|..
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSCEE-SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCC---------CCCcEE-EEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 457899999665677776655 788888873 322111 112223357899999876355566566789999
Q ss_pred EecCCC
Q psy4577 325 WDINAT 330 (384)
Q Consensus 325 wd~~~~ 330 (384)
+|+...
T Consensus 230 ~~~dG~ 235 (349)
T 3v64_C 230 ANLDGS 235 (349)
T ss_dssp EETTSC
T ss_pred EeCCCC
Confidence 998764
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.68 E-value=0.65 Score=38.80 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC-ccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE-CHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
.+..+.+.+++. +++++. +|.|. +... .+. ...+.........+.++.|.+++ .++.++.+|.|.-
T Consensus 251 ~~~~v~~~~~~~-~~~~g~-~g~i~-~S~D--------gG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 251 GFLDLAYRTPNE-VWLAGG-AGALL-CSQD--------GGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLR 317 (327)
T ss_dssp CEEEEEESSSSC-EEEEES-TTCEE-EESS--------TTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEE
T ss_pred ceEEEEecCCCE-EEEEeC-CCeEE-EeCC--------CCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEE
Confidence 467888888774 666654 67663 3322 121 11111111233467888887554 5667778898877
Q ss_pred Eec
Q psy4577 325 WDI 327 (384)
Q Consensus 325 wd~ 327 (384)
++-
T Consensus 318 ~~~ 320 (327)
T 2xbg_A 318 YVT 320 (327)
T ss_dssp ECC
T ss_pred EcC
Confidence 764
No 267
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.46 E-value=0.92 Score=37.66 Aligned_cols=72 Identities=10% Similarity=0.184 Sum_probs=44.8
Q ss_pred eEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577 247 VNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPSLNGYLLSASDDHT 321 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~~~~~l~s~s~Dg~ 321 (384)
.+.++..++| +..++++.. +.|...+. .+......-+ .......+.|+++|+| ++|+....+|.
T Consensus 139 ~nDvavD~~G-naYVt~s~~~~~I~rV~p---------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~ 207 (334)
T 2p9w_A 139 VVQSAQDRDG-NSYVAFALGMPAIARVSA---------DGKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRA 207 (334)
T ss_dssp EEEEEECTTS-CEEEEEEESSCEEEEECT---------TSCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSS
T ss_pred CceeEECCCC-CEEEeCCCCCCeEEEEeC---------CCCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCe
Confidence 5677777777 477777666 66655554 2221110001 1112246799999999 56666655999
Q ss_pred EEEEecCC
Q psy4577 322 ICLWDINA 329 (384)
Q Consensus 322 i~iwd~~~ 329 (384)
+.-+|++.
T Consensus 208 L~~fD~~~ 215 (334)
T 2p9w_A 208 LTAFDVSK 215 (334)
T ss_dssp EEEEECSS
T ss_pred EEEEcCCC
Confidence 99999884
No 268
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.13 E-value=0.025 Score=48.45 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=37.4
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.+++++.||.|+.||.. ++.. +..+.. +.+.+..+.+++ .++++++.||.|+.||.++++
T Consensus 11 ~v~~gs~dg~v~a~d~~--------tG~~--~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKR--------TGSI--KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp EEEEEETTSEEEEEETT--------TCCE--EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C
T ss_pred EEEEEcCCCEEEEEECC--------CCCE--EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCc
Confidence 78888999999999986 4543 334443 445555556676 688888999999999998876
No 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.90 E-value=2.3 Score=39.13 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
..++|++++++++++.+-...+.|..+|+. +..... ...+.-....+|++..+ .++.|-...+.|...
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~d---------G~~~~~-~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNRQA-VVKGSLPHPFALTLFED--ILYWTDWSTHSILAC 239 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSS---------CCEEC----------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCC---------CCccEE-EEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence 467899999776677777777889998884 322211 11111222356777655 466676677899999
Q ss_pred ecCCCC
Q psy4577 326 DINATP 331 (384)
Q Consensus 326 d~~~~~ 331 (384)
|..+++
T Consensus 240 d~~tg~ 245 (619)
T 3s94_A 240 NKYTGE 245 (619)
T ss_dssp ESSSCC
T ss_pred ECCCCc
Confidence 987775
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.79 E-value=2.9 Score=39.80 Aligned_cols=93 Identities=6% Similarity=-0.102 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPSLNGYLLSASDDH 320 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~~~~~l~s~s~Dg 320 (384)
..|.++...+++. +.+. +.+ -+.+||.. .+........ .-....|.++...++| .+.+.. . +
T Consensus 452 ~~v~~i~~d~~g~-lwig-t~~-Gl~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt-~-~ 517 (795)
T 4a2l_A 452 ENVYAILPDGEGN-LWLG-TLS-ALVRFNPE--------QRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWIGG-E-E 517 (795)
T ss_dssp SCEEEEEECSSSC-EEEE-ESS-CEEEEETT--------TTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEEEE-S-S
T ss_pred CeeEEEEECCCCC-EEEE-ecC-ceeEEeCC--------CCeEEEccccccccccCCceEEEEEECCCC-CEEEEe-C-C
Confidence 4578888888884 5444 344 48888864 2222221111 1123578999999998 444433 3 5
Q ss_pred cEEEEecCCCCCCCccccceeeee-------ccCCcEeEEEEecCCC
Q psy4577 321 TICLWDINATPKENRVIDAKTIFT-------GHTAVVELELIERLTK 360 (384)
Q Consensus 321 ~i~iwd~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~ 360 (384)
.|..||..+.+ . .+. .....|.++...++|.
T Consensus 518 Gl~~~~~~~~~-------~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 518 GLSVFKQEGLD-------I--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp CEEEEEEETTE-------E--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred ceEEEeCCCCe-------E--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 68889887653 2 111 1334577777777666
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.53 E-value=1.7 Score=35.80 Aligned_cols=62 Identities=2% Similarity=-0.018 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC---CCCCCeEEEee
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN---PSLNGYLLSAS 317 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s---~~~~~~l~s~s 317 (384)
....++++++| +++++....+.|.++|. .+....+..+...-...++++|. |++..++++.+
T Consensus 213 ~P~gi~vd~dG-~l~va~~~~~~V~~~~~---------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 213 NIDDFAFDVEG-NLYGATHIYNSVVRIAP---------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCSSEEEBTTC-CEEEECBTTCCEEEECT---------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCCeEECCCC-CEEEEeCCCCeEEEECC---------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 35678899999 47777777889999986 33322222233233468899998 88633444433
No 272
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.44 E-value=0.17 Score=47.29 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=37.5
Q ss_pred CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
+|.|+.||+.+ .+++..+..+. ++..-.+...+. +++.++.|+.++.||..++
T Consensus 454 ~g~l~A~D~~t--------------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 454 SGKLIAWDPVK--------------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp EEEEEEEETTT--------------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred ceeEEEEECCC--------------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC
Confidence 36788888876 35555444433 344446666777 7889999999999999987
No 273
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.11 E-value=0.39 Score=41.27 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCc--EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE--eeCC
Q psy4577 244 EGEVNRARYMPQNPC--VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS--ASDD 319 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s--~s~D 319 (384)
..+|..+.|+|-+.+ .|++-..|+.||+||+......+..-........+......|.+++|..++ -.|.. .+..
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~ 202 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEG 202 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTS
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCC
Confidence 577999999996532 677778999999999974221110000000011222233578899999976 55555 4477
Q ss_pred CcEEEE
Q psy4577 320 HTICLW 325 (384)
Q Consensus 320 g~i~iw 325 (384)
|.|+-.
T Consensus 203 GDIYAl 208 (452)
T 3pbp_A 203 GDIFAF 208 (452)
T ss_dssp CEEEEE
T ss_pred CCEEEE
Confidence 777643
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.87 E-value=1 Score=39.35 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=59.7
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEee
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSAS 317 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s 317 (384)
.......|+|++++..++++...++ .+.+++. .+.......+.. ......++++| +| .++++-.
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~---------~g~~~~~~~l~~-~~~p~giavdp~~g-~lyv~d~ 245 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR---------ESGFKVITELTK-GQNCNGAETHPING-ELYFNSW 245 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG---------GGTSCSEEEEEE-CSSCCCEEECTTTC-CEEEEET
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC---------CCceeeeeeecc-CCCceEEEEeCCCC-EEEEEEC
Confidence 3456789999999964666554333 2334443 222221122221 23456889999 66 6777766
Q ss_pred CCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKK 361 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~ 361 (384)
.++.|+.++..+.. ...... +....-+.++|+|+++.
T Consensus 246 ~~~~V~~~~~~~~~-------~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 246 NAGQVFRYDFTTQE-------TTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp TTTEEEEEETTTTE-------EEEEEECSSSSCCEEEEECTTSSE
T ss_pred CCCEEEEEECCCCc-------EEEEEEcCCCCcceeEEEcCCCCE
Confidence 78899999998653 211111 11234568999999983
No 275
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.60 E-value=0.31 Score=45.47 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 18 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 18 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
+.|..||+.+ .+.+.... +..++.+..+...+. +++.++.|+.+++||..++
T Consensus 457 g~l~A~D~~t--------------G~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 457 GRLLAWDPVA--------------QKAAWSVE-HVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEEETTT--------------TEEEEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred cEEEEEeCCC--------------CcEEeecC-CCCCCcCcceEeCCC-EEEEECCCCcEEEEECCCC
Confidence 6788888876 24444433 233455666777777 7778899999999999987
No 276
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.43 E-value=0.42 Score=37.03 Aligned_cols=99 Identities=8% Similarity=-0.038 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc--------eEEEEeCCCCCCeEEEee
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE--------GYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--------i~~~~~s~~~~~~l~s~s 317 (384)
.+..++|+|++. +.+. .+|.++-.+.. +.... .+.+-... -.++.|.|+| .+.++
T Consensus 42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~~~--------t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV--LNDKIYKGTPP--------THDND---NWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSC-EEEE--ETTEEEEESCC--------CSTTC---CHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--
T ss_pred cceeEEECCCcc-EEEE--eCCeEEEECCC--------CCCcc---cccccccEecccccccceEEEECCCC-CEEEe--
Confidence 577999999885 7776 56765554432 11100 11111112 3789999998 56666
Q ss_pred CCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCcc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKA 362 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~ 362 (384)
.||.|+-++-.+... ..++..-.++ .+-=..+..|.|.|+|..-
T Consensus 105 ~dG~iyr~~pP~~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly 149 (236)
T 1tl2_A 105 SKDKLYKASPPQSDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLY 149 (236)
T ss_dssp ETTEEEEESCCCSTT-CCHHHHSEEEECSSGGGEEEEEECTTSCEE
T ss_pred CCCEEEEeCCCcCCC-CceeccccEeccCCCCceEEEEECCCceEE
Confidence 679998887654321 1222111111 1111357888888888753
No 277
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.33 E-value=4.9 Score=37.04 Aligned_cols=75 Identities=9% Similarity=-0.041 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
-...++|++++++.+++.+-...+.|..+|+. +.... .+...-....+|++.. + .++.|-...+.|.
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d---------G~~~~--v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNML---------GLNRE--VIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIE 231 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCE--EEEECCSCEEEEEEET-T-EEEEEETTTTEEE
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCC---------CCceE--EeeccCCCceEEEEEC-C-EEEEecCCCCEEE
Confidence 35678999999876677777778899999984 32221 2222333456788765 3 5666766789999
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
..|..+++
T Consensus 232 ~~dk~tg~ 239 (628)
T 4a0p_A 232 RANKTSGQ 239 (628)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 99987775
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.31 E-value=2.2 Score=35.28 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=62.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
.....+++|++.+..++.+-..++.|+.+++.... .+.. ....+...-.....+++.+.+.+++++-...+.|.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~-----~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-----GVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC-----CCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 44578999998765688887778999999985200 0011 11122222234578888875425666667788999
Q ss_pred EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577 324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
+.+..... ....+........+++..|.+..
T Consensus 103 ~~~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 103 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGF 133 (316)
T ss_dssp EEETTSSS-------EEEEEECTTCCEEEEEEETTTTE
T ss_pred EEeCCCCc-------eEEEEECCCCCcceEEeCCCCCE
Confidence 99987543 22222222234567777776553
No 279
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.13 E-value=6.1 Score=37.58 Aligned_cols=97 Identities=6% Similarity=-0.080 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec------CCCCceEEEEeCCCCCCeEEEeeC
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR------GHQKEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~s~~~~~~l~s~s~ 318 (384)
..|.++...++|. +. .|+.++-|..|+.. .+.......-. -....|.++...++| .+|-.|+.
T Consensus 357 ~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~ 425 (795)
T 4a2l_A 357 NVVSCIVEDKDKN-LW-IGTNDGGLNLYNPI--------TQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTH 425 (795)
T ss_dssp SSEEEEEECTTSC-EE-EEESSSCEEEECTT--------TCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEET
T ss_pred CeeEEEEECCCCC-EE-EEECCCCeEEEcCC--------CCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeC
Confidence 4588898888884 44 46777778999875 22222111000 123578999998887 53566777
Q ss_pred CCcEEEEecCCCCCCCccccceeeee-----ccCCcEeEEEEecCCC
Q psy4577 319 DHTICLWDINATPKENRVIDAKTIFT-----GHTAVVELELIERLTK 360 (384)
Q Consensus 319 Dg~i~iwd~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~ 360 (384)
++-|..||.++++ . ..+. .+...|.++...+++.
T Consensus 426 ~~Gl~~~d~~~~~-------~-~~~~~~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 426 AGGLSILHRNSGQ-------V-ENFNQRNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp TTEEEEEETTTCC-------E-EEECTTTSCCSCSCEEEEEECSSSC
T ss_pred cCceeEEeCCCCc-------E-EEeecCCCCcCCCeeEEEEECCCCC
Confidence 7789999988764 1 1111 1234577777666555
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.10 E-value=3.8 Score=35.08 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
.....++++|.+..++.+-..+ +.|..+++. +..... .....-...+.|+|+|++.+++++-+..+.|.
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSCEE-EECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------CCCcEE-EEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 4568999999776677765555 778888873 332221 22222345789999987635556666678899
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
.+|+....
T Consensus 272 ~~d~dG~~ 279 (386)
T 3v65_B 272 RANLDGSH 279 (386)
T ss_dssp EECTTSCS
T ss_pred EEeCCCCe
Confidence 99987543
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=92.50 E-value=3.8 Score=35.29 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=63.0
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
....+..++|++.+..++.+-..++.|+.+++.... ........+...-.....+++.+.+.+++++-...+.|
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~------~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC------CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeE
Confidence 445678999998765677776778889999874210 00111222222334577899987442566676678899
Q ss_pred EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
.+.++.... ....+.........++..|.+.
T Consensus 184 ~~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 184 SVADTKGVK-------RKTLFRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp EEECTTTCS-------EEEEEECSSCCEEEEEEETTTT
T ss_pred EEEeCCCCc-------eEEEEeCCCCCcceEEEecccC
Confidence 999987654 2222222223356677766544
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.49 E-value=4 Score=33.82 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=47.2
Q ss_pred ceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 246 EVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
....+++.|.+..++.+-. ..+.|...++. +..... .+...-..-+.|+++|++.+++.+=+..+.|..
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMD---------GSSRFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETT---------SCSCEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcC---------CCCeEE-EEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 4578889986545666542 35778888773 332221 122222356899999976345555556789999
Q ss_pred EecCCC
Q psy4577 325 WDINAT 330 (384)
Q Consensus 325 wd~~~~ 330 (384)
+|+...
T Consensus 193 ~d~dG~ 198 (318)
T 3sov_A 193 SNLDGT 198 (318)
T ss_dssp EETTSC
T ss_pred EcCCCC
Confidence 998754
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=92.03 E-value=8.4 Score=36.53 Aligned_cols=75 Identities=4% Similarity=-0.084 Sum_probs=46.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
...|.++...+++. +.+ |+.++-|..+|.. .+..............|.++...++| .+.+ |.. +-|.
T Consensus 406 ~~~v~~i~~d~~g~-lWi-gt~~~Gl~~~~~~--------~~~~~~~~~~~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~ 472 (781)
T 3v9f_A 406 SNSVLCSLKDSEGN-LWF-GTYLGNISYYNTR--------LKKFQIIELEKNELLDVRVFYEDKNK-KIWI-GTH-AGVF 472 (781)
T ss_dssp CSBEEEEEECTTSC-EEE-EETTEEEEEECSS--------SCEEEECCSTTTCCCCEEEEEECTTS-EEEE-EET-TEEE
T ss_pred CcceEEEEECCCCC-EEE-EeccCCEEEEcCC--------CCcEEEeccCCCCCCeEEEEEECCCC-CEEE-EEC-CceE
Confidence 35688888888774 444 5666678888864 23222111001134579999999887 4443 334 5688
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
.+|..+++
T Consensus 473 ~~~~~~~~ 480 (781)
T 3v9f_A 473 VIDLASKK 480 (781)
T ss_dssp EEESSSSS
T ss_pred EEeCCCCe
Confidence 99987754
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.95 E-value=5.9 Score=34.53 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=48.1
Q ss_pred CceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 245 GEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 245 ~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
.....++++| ++ +++++-..++.|+.+|.. .+.. ..+... +....-..++|+|++..++++-...++|
T Consensus 228 ~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~--------~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 228 RGAKTCAVHPQNG-KIYYTRYHHAMISSYDPA--------TGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp SSBCCCEECTTTC-CEEECBTTCSEEEEECTT--------TCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCC-eEEEEECCCCEEEEEECC--------CCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 3456788899 56 577776677889988874 2332 111111 1222345799999983256666677899
Q ss_pred EEEecCC
Q psy4577 323 CLWDINA 329 (384)
Q Consensus 323 ~iwd~~~ 329 (384)
+.++...
T Consensus 298 ~~~~~d~ 304 (433)
T 4hw6_A 298 YRVDYNR 304 (433)
T ss_dssp EEEEBCT
T ss_pred EEEeCCC
Confidence 9988763
No 285
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.56 E-value=4.7 Score=33.87 Aligned_cols=112 Identities=7% Similarity=-0.085 Sum_probs=63.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCC----CCCeEEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPS----LNGYLLS 315 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~----~~~~l~s 315 (384)
-.....++|.|+|. ++++--..|.|++++.. .+...++..+ .........|+++|+ + .+.++
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~--------~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~ 100 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAK--------TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAY 100 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTT--------TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECC--------CCcEeeecccCceeecCCCCceeeEeccccccCC-EEEEE
Confidence 45678999999995 88775558999988753 2332222222 223456899999995 4 34443
Q ss_pred e--eCCCcEEEEecCCCCC----CCccccceeeee-ccCCcEeEEEEecCCCccccc
Q psy4577 316 A--SDDHTICLWDINATPK----ENRVIDAKTIFT-GHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 316 ~--s~Dg~i~iwd~~~~~~----~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~ 365 (384)
- ..++.|.-|....... .......+..+. +....-..|+|.|||....++
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 2 3456677776665210 001001111222 112234679999999754443
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.54 E-value=3.4 Score=39.25 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=63.4
Q ss_pred cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI 322 (384)
Q Consensus 243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i 322 (384)
....+.+|+|++....++.+-...+.|+.+++..... .......+...-.....|++.+.+.+++++-...++|
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 3456778999986656777777788899988842100 0111222332334567888887763566676778999
Q ss_pred EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577 323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK 360 (384)
Q Consensus 323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 360 (384)
.+.++.... ....+.........|++.|.+.
T Consensus 496 ~v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 496 SVADTKGVK-------RKTLFRENGSKPRAIVVDPVHG 526 (791)
T ss_dssp EEEETTSSS-------EEEEEECTTCCEEEEEEETTTT
T ss_pred EEEeCCCCe-------EEEEEeCCCCCcceEEEecCCC
Confidence 999998653 2222222333466777777644
No 287
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.51 E-value=3.3 Score=36.37 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------CCCceEEEEeCCC---CCCeEE
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------HQKEGYGLSWNPS---LNGYLL 314 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------h~~~i~~~~~s~~---~~~~l~ 314 (384)
-....+++|.|+|. ++++-...+.|++++.. .+....+..+.. .......|+|+|+ +..+.+
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~--------~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPE--------SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTT--------TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECC--------CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 34567999999995 77775444568887653 233333333321 2456789999994 324555
Q ss_pred EeeC------------CCcEEEEecCCCCCC-Cccccceeeee-ccCCcEeEEEEecCCCccccc
Q psy4577 315 SASD------------DHTICLWDINATPKE-NRVIDAKTIFT-GHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 315 s~s~------------Dg~i~iwd~~~~~~~-~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~ 365 (384)
+-+. ...|.-++....... ......+..+. +....-..++|.|||....+.
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 5443 235666665432100 00000111122 112347889999999755544
No 288
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.36 E-value=5.9 Score=33.36 Aligned_cols=71 Identities=4% Similarity=-0.174 Sum_probs=40.2
Q ss_pred ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577 289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD 363 (384)
Q Consensus 289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 363 (384)
|...+..| .....++| .+| .++++.-..+.|...++.......+ ......+..-...+.++++.|||....
T Consensus 260 p~~~~~~~-~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~rp~~v~~~pdG~lyv 330 (352)
T 2ism_A 260 PLYFWPQG-FPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWR-VLRVETALSGFGRLREVQVGPDGALYV 330 (352)
T ss_dssp CSEECTTC-CCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEE-EEEEEEEEESSCCEEEEEECTTSCEEE
T ss_pred CeEecCCC-CCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCccee-ecchheecccCCCeeEEEECCCCcEEE
Confidence 44455333 34567888 466 5777666677888888765431000 000112212235789999999996443
No 289
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.29 E-value=2.7 Score=35.52 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec---CCCCceEEEEeCCC---CCCeEEEee
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR---GHQKEGYGLSWNPS---LNGYLLSAS 317 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~s~~---~~~~l~s~s 317 (384)
-.....++|.|++. ++++ ..+|.|++++. .+. ..+..+. ........|+++|+ +..++++-+
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~---------~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLISP---------SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEECS---------SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEeC---------CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 34568999999994 6666 55699998873 343 3332221 22346889999997 324555544
Q ss_pred C---C----CcEEEEecCCCCCCCccccce-eeeec-cCCcEeEEEEecCCCccccc
Q psy4577 318 D---D----HTICLWDINATPKENRVIDAK-TIFTG-HTAVVELELIERLTKKADPV 365 (384)
Q Consensus 318 ~---D----g~i~iwd~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~sp~~~~~~~~ 365 (384)
. + ..|..|+.......-.....+ ..+.. ....-..++|.|||....+.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 2 3 578888876541000000011 11221 11234679999999755443
No 290
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=90.91 E-value=6.6 Score=33.15 Aligned_cols=60 Identities=8% Similarity=-0.080 Sum_probs=35.5
Q ss_pred eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc---------ccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577 10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH---------TAKISDFSWNPNEPWVICSVSEDNIMQIL 80 (384)
Q Consensus 10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh---------~~~V~~l~~~~~~~~~l~s~s~D~~i~vw 80 (384)
.|.+++.++.|..+|..+. +.+...... ...+.+.-.. ++. .++.++.|+.|..+
T Consensus 55 ~v~~~~~~g~v~a~d~~tG--------------~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDG--------------KEIWSVSLAEKDGWFSKEPALLSGGVTV-SGG-HVYIGSEKAQVYAL 118 (376)
T ss_dssp EEEEECTTSEEEEEETTTC--------------CEEEEEECCC---CCSCCCCCEEEEEEE-ETT-EEEEEETTSEEEEE
T ss_pred EEEEEcCCCeEEEEEccCC--------------ceeeeecCccccccccccCcccccCceE-eCC-EEEEEcCCCEEEEE
Confidence 4677777889999998752 222221111 1123222212 233 45678889999999
Q ss_pred EcccC
Q psy4577 81 SVVCV 85 (384)
Q Consensus 81 d~~~~ 85 (384)
|..++
T Consensus 119 d~~tG 123 (376)
T 3q7m_A 119 NTSDG 123 (376)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99876
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=90.30 E-value=3.7 Score=34.60 Aligned_cols=107 Identities=7% Similarity=-0.091 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCC---CCCeEEEeeC
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPS---LNGYLLSASD 318 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~---~~~~l~s~s~ 318 (384)
.....++|.|+|. ++++ ..+|.|++++ . +....+..+ .........|+|+|+ +..++++-..
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~-~---------g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR-E---------GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE-T---------TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE-C---------CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 4567999999995 6666 5569999987 2 222222222 122346789999998 4245555443
Q ss_pred C-----CcEEEEecCCCCCCCccccceeeee---ccCCcEeEEEEecCCCcccc
Q psy4577 319 D-----HTICLWDINATPKENRVIDAKTIFT---GHTAVVELELIERLTKKADP 364 (384)
Q Consensus 319 D-----g~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~ 364 (384)
+ +.|..++....... ..-..+..+. +....-..++|.|+|....+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCCCCccEEEEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 3 67888887743200 0000111122 11122368999999964444
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=88.49 E-value=10 Score=31.82 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CC-CCceEEEEe--CCCCCCeEEEee-C
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GH-QKEGYGLSW--NPSLNGYLLSAS-D 318 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h-~~~i~~~~~--s~~~~~~l~s~s-~ 318 (384)
...+..+...+... .|..+-++.-|..++..... ......+..+. ++ ...+..|+. .+++..+|+.++ .
T Consensus 179 gsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~-----~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 179 NSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDG-----GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp SSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTS-----CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CCCcceEEEcCCCC-eEEEecccceEEEEeCCcCC-----CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 44677888888775 66677777555445543210 11112222221 22 236777777 566532555544 6
Q ss_pred CCcEEEEecC-CCC
Q psy4577 319 DHTICLWDIN-ATP 331 (384)
Q Consensus 319 Dg~i~iwd~~-~~~ 331 (384)
+.+..+||.+ +.+
T Consensus 253 ~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 253 NSSYAIYDRQGKNK 266 (355)
T ss_dssp GTEEEEEESSTTCC
T ss_pred CCEEEEEECCCCCc
Confidence 7899999997 444
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=88.10 E-value=4.6 Score=33.51 Aligned_cols=104 Identities=8% Similarity=-0.030 Sum_probs=61.3
Q ss_pred eEEEEE---cCCCCcEEEEEe-------------CCCcEEEEecCCCCCCCCCCCCccceeeecCC----------C-Cc
Q psy4577 247 VNRARY---MPQNPCVIATKT-------------PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----------Q-KE 299 (384)
Q Consensus 247 v~~v~~---~p~~~~~l~s~s-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----------~-~~ 299 (384)
+.+|.+ .|++ .++++.. .+..+..||+.... ++.......+... . ..
T Consensus 65 ~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~-----tg~~~~~~dL~~~~~~~~~~~g~~~~~ 138 (334)
T 2p9w_A 65 MSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSE-----NSKPVWSVNFEKVQDEFEKKAGKRPFG 138 (334)
T ss_dssp EEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCT-----TCCCSEEEESHHHHHHHHHHHSSCCEE
T ss_pred eeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCC-----CCCEEEEecCccccccccccccccccC
Confidence 368888 6876 4766533 25778899985100 1222222222211 1 24
Q ss_pred eEEEEeCCCCCCeEEEeeCC-CcEEEEecCCCCCCCccccceeeee------ccCCcEeEEEEecCCCccccc
Q psy4577 300 GYGLSWNPSLNGYLLSASDD-HTICLWDINATPKENRVIDAKTIFT------GHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 300 i~~~~~s~~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~~~~ 365 (384)
...++..++| +..++++.- +.|...+..... +..+. ......+.++++|++..+...
T Consensus 139 ~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~ 202 (334)
T 2p9w_A 139 VVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAF 202 (334)
T ss_dssp EEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEE
T ss_pred CceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--------EeeeeecCCCcccccCcceEEEeCCCCEEEEE
Confidence 7899999999 788888887 777666665432 11111 112236788999999755544
No 294
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=87.12 E-value=21 Score=33.86 Aligned_cols=75 Identities=8% Similarity=-0.033 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTIC 323 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i~ 323 (384)
..|.++...++|. +.+ |+.++-+..||.. .+.........+ ....|.++...++| .+.++. .+|-|.
T Consensus 495 ~~i~~i~~d~~g~-lWi-gt~~~Gl~~~~~~--------~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWi~T-~~Glv~ 562 (781)
T 3v9f_A 495 NFVRSIAQDSEGR-FWI-GTFGGGVGIYTPD--------MQLVRKFNQYEGFCSNTINQIYRSSKG-QMWLAT-GEGLVC 562 (781)
T ss_dssp SCEEEEEECTTCC-EEE-EESSSCEEEECTT--------CCEEEEECTTTTCSCSCEEEEEECTTS-CEEEEE-TTEEEE
T ss_pred ceeEEEEEcCCCC-EEE-EEcCCCEEEEeCC--------CCeEEEccCCCCCCCCeeEEEEECCCC-CEEEEE-CCCceE
Confidence 5688999999885 544 3443447778764 222111111011 23478999999988 444443 366558
Q ss_pred EEecCCCC
Q psy4577 324 LWDINATP 331 (384)
Q Consensus 324 iwd~~~~~ 331 (384)
.||..+.+
T Consensus 563 ~~d~~~~~ 570 (781)
T 3v9f_A 563 FPSARNFD 570 (781)
T ss_dssp ESCTTTCC
T ss_pred EECCCCCc
Confidence 88887653
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=86.97 E-value=2.4 Score=39.33 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred EEEEcC-CCCcEEEEEeCCC-----------cEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEE
Q psy4577 249 RARYMP-QNPCVIATKTPSS-----------DVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 249 ~v~~~p-~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s 315 (384)
.+++.| ++ .+++.|+.+. .+.+||.. ++....+..+.. +.....++++.+++ .+++.
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~--------t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPS--------TGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVT 259 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTT--------TCCBCCCEEEECSCCCSSCEEEECTTS-CEEEE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCC--------CCcEEeCcccCCCCCCccccccCCCCC-CEEEe
Confidence 566677 67 4888877543 57889886 444444433322 33345567888888 78888
Q ss_pred eeC-CCcEEEEecCCC
Q psy4577 316 ASD-DHTICLWDINAT 330 (384)
Q Consensus 316 ~s~-Dg~i~iwd~~~~ 330 (384)
|+. +..+.+||..+.
T Consensus 260 GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSD 275 (656)
T ss_dssp CSSSTTCEEEEEGGGT
T ss_pred CCCCCCceEEecCcCC
Confidence 884 568999998765
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=86.83 E-value=7.1 Score=34.60 Aligned_cols=107 Identities=8% Similarity=0.056 Sum_probs=59.2
Q ss_pred ceEEEEE-------cCCCCcEEEEEeCCCc------EEEEecCCCCCCCCCCCCccc---eeeecCCCCceEEEEeCCCC
Q psy4577 246 EVNRARY-------MPQNPCVIATKTPSSD------VLVFDYTKHPSKPDPNGECHP---DLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 246 ~v~~v~~-------~p~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~~~~~---~~~~~~h~~~i~~~~~s~~~ 309 (384)
....|+| ++++..++++-..++. |.+++... .+.... ...+... .....++.+|++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~-------~G~~~~~~~~~~v~~~-~~p~giavdp~~ 258 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA-------DGTFDDRSDIQLIAAY-KQCNGATIHPIN 258 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT-------TSCCSTTSCEEEEEEE-SCCCCEEECTTT
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC-------CCceeecccceeeccC-CCceEEEEcCCC
Confidence 5789999 9999645555444322 66666321 112210 0112111 234578899954
Q ss_pred CCeEEEeeCCCcEEEEecC-------CCCCCCc---c----ccceeeeeccCCcEeEEEEecCCCc
Q psy4577 310 NGYLLSASDDHTICLWDIN-------ATPKENR---V----IDAKTIFTGHTAVVELELIERLTKK 361 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~h~~~v~~~~~sp~~~~ 361 (384)
..++++-..++.|+.+|+. ++....+ . ...+... +....-+.++|+|+++.
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~ 323 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKY 323 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCE
Confidence 3567777788899999997 4431000 0 0011111 12344578999999983
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=85.77 E-value=1.4 Score=41.27 Aligned_cols=81 Identities=9% Similarity=-0.050 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
..+.+|+|++.+..++++-...+.|+.+++..... +.. ....+...-.....|++.+.+.+++++-...+.|.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~-----~~~-~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----VSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------CC-CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCC-----Ccc-eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence 45678899987655666666678999998852100 011 111111111234578888654356666667789999
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
.++....
T Consensus 480 ~d~dg~~ 486 (699)
T 1n7d_A 480 ADTKGVK 486 (699)
T ss_dssp EBSSSCC
T ss_pred EecCCCc
Confidence 9987653
No 298
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=84.21 E-value=26 Score=32.47 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcEEEEEeCCC-------------------cEEEEecCCCCCCCCCCCCccceeeecCCC-------CceE
Q psy4577 248 NRARYMPQNPCVIATKTPSS-------------------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQ-------KEGY 301 (384)
Q Consensus 248 ~~v~~~p~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-------~~i~ 301 (384)
..++++|... ++..++.++ .|.-+|.+ ++...-......|. .+..
T Consensus 233 ~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~--------tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 233 DSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD--------TGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT--------TCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC--------CCceeeEeecCCCccccccCCCCcE
Confidence 3567777664 666666555 37777775 45433222222232 2222
Q ss_pred EEEeCCCCC--CeEEEeeCCCcEEEEecCCCC
Q psy4577 302 GLSWNPSLN--GYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 302 ~~~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
......+|. .+|+.++.+|.++++|..+++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 222233541 268999999999999999987
No 299
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=81.96 E-value=11 Score=31.73 Aligned_cols=111 Identities=8% Similarity=-0.026 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceee----ecCCCCceEEEEeCCC---CCCeEEEe
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLR----LRGHQKEGYGLSWNPS---LNGYLLSA 316 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~----~~~h~~~i~~~~~s~~---~~~~l~s~ 316 (384)
.....++|.|+|..++++ ...|.|++++.. +.. .++.. ..........|+++|+ +..++++-
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~---------g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG---------KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT---------TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC---------CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 456899999999425554 567999998842 211 11111 1122345789999995 32455554
Q ss_pred eC-------CCcEEEEecCCCCCCCccccc-eeeee---ccCCcEeEEEEecCCCccccc
Q psy4577 317 SD-------DHTICLWDINATPKENRVIDA-KTIFT---GHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 317 s~-------Dg~i~iwd~~~~~~~~~~~~~-~~~~~---~h~~~v~~~~~sp~~~~~~~~ 365 (384)
+. ...|..|++......-..... +..+. .....-..++|.|||....+.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 33 235666776543110000001 11111 111123568999998644443
No 300
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.95 E-value=28 Score=30.47 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=22.8
Q ss_pred cCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 294 ~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.||. ....++|+|+|..+++--+.|+.-.|.-+..+.
T Consensus 225 ~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~G~ 261 (454)
T 1cru_A 225 LGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGG 261 (454)
T ss_dssp BCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCTTC
T ss_pred ECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecCCC
Confidence 3554 467999999874333444456666666665543
No 301
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=80.34 E-value=3.5 Score=37.51 Aligned_cols=46 Identities=13% Similarity=-0.129 Sum_probs=29.6
Q ss_pred CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc-EeEEEEecCCCccc
Q psy4577 311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VELELIERLTKKAD 363 (384)
Q Consensus 311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~~ 363 (384)
.+++.++.||.|+.||.++++ .+..+.-.... -.-+.+.++|....
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~-------~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGK-------ELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCC-------EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCC-------EEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 467778999999999999998 66666532111 12233556665433
No 302
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=78.60 E-value=8.9 Score=34.83 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=18.8
Q ss_pred ccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 61 NPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 61 ~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
...+. +++.++.|+.|+.||..++
T Consensus 472 ~t~gg-~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 472 YTKGG-LVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EETTT-EEEEECTTSEEEEEETTTC
T ss_pred EECCC-EEEEEcCCCeEEEEECCCC
Confidence 33455 5667899999999999886
No 303
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=78.53 E-value=4.4 Score=36.93 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=35.5
Q ss_pred CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcE-eEEEEecCCCccccccc
Q psy4577 311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV-ELELIERLTKKADPVCT 367 (384)
Q Consensus 311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~sp~~~~~~~~c~ 367 (384)
.+++.|+.||.++.||.++++ .+-.++...+.+ .-+.|..+|++..++..
T Consensus 498 glvf~g~~dg~l~A~D~~tG~-------~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 498 NLVFTGTGDGYFKAFDAKSGK-------ELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TEEEEECTTSEEEEEETTTCC-------EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCC-------EEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 578889999999999999998 777776433221 23667778876555543
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=78.42 E-value=7.1 Score=32.90 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCcEEEEEeC---C------------CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577 245 GEVNRARYMPQNPCVIATKTP---S------------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL 309 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~---d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 309 (384)
...+.+.+.++|. ++++... | ..=++|.+. .+... .+...-..-+.++|+||+
T Consensus 165 ~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d--------~~~~~---~~~~~l~~pNGia~spDg 232 (355)
T 3sre_A 165 PSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--------PNDVR---VVAEGFDFANGINISPDG 232 (355)
T ss_dssp SSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC--------TTCCE---EEEEEESSEEEEEECTTS
T ss_pred CCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE--------CCeEE---EeecCCcccCcceECCCC
Confidence 3578899999984 7776541 1 223444443 12111 222222356899999998
Q ss_pred CCeEEEeeCCCcEEEEecCC
Q psy4577 310 NGYLLSASDDHTICLWDINA 329 (384)
Q Consensus 310 ~~~l~s~s~Dg~i~iwd~~~ 329 (384)
..++++-+..++|+.|++..
T Consensus 233 ~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEECC
Confidence 44555556679999999974
No 305
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.72 E-value=10 Score=34.54 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=18.5
Q ss_pred CCCcEEEEEecCCeEEEEEcccC
Q psy4577 63 NEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 63 ~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
.+. +++.++.|+.++.||..++
T Consensus 496 agg-lvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 496 AGN-LVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp TTT-EEEEECTTSEEEEEETTTC
T ss_pred CCC-EEEEECCCCcEEEEECCCC
Confidence 345 6778999999999999887
No 306
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=77.14 E-value=13 Score=33.38 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=59.7
Q ss_pred EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc----eeeecCCCCceEEEEeCCCCCCeE
Q psy4577 238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP----DLRLRGHQKEGYGLSWNPSLNGYL 313 (384)
Q Consensus 238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~h~~~i~~~~~s~~~~~~l 313 (384)
...+.-.....++..+|+|++++++|-.+.++.++|++......+ .....+ ..... -...-...+|.++| ...
T Consensus 316 ~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~-~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aY 392 (638)
T 3sbq_A 316 TRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA-GKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAY 392 (638)
T ss_dssp EEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT-TCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEE
T ss_pred EEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh-ccccCcccceEeecc-CCCcccEEEECCCC-ceE
Confidence 334455566778999999998888888899999999973110000 000001 11112 12356789999998 677
Q ss_pred EEeeCCCcEEEEecCCC
Q psy4577 314 LSASDDHTICLWDINAT 330 (384)
Q Consensus 314 ~s~s~Dg~i~iwd~~~~ 330 (384)
.|---|..|.-|++...
T Consensus 393 TtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEETTTTEEEEEEHHHH
T ss_pred eeeeecceEEEEeccHH
Confidence 78889999999999753
No 307
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=76.45 E-value=33 Score=28.73 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=37.6
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.+..++.++.|..+|.. ++.. +.... .....+..... .+ ..|+.++.+|.|+.+|.++++
T Consensus 279 ~l~~~~~~g~l~~~d~~--------tG~~--~w~~~~~~~~~~~~~~~--~~-~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTID--------GGVT--LWTQSDLLHRLLTSPVL--YN-GNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EEEEEETTCCEEEEETT--------TCCE--EEEECTTTTSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEcCCCeEEEEECC--------CCcE--EEeecccCCCcccCCEE--EC-CEEEEEeCCCeEEEEECCCCc
Confidence 55666788999999986 4432 22222 11111222222 23 478888899999999999987
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.00 E-value=26 Score=27.27 Aligned_cols=103 Identities=7% Similarity=-0.047 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee--cCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL--RGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
..++.|.|+|. +.++ .||.|+-++-.... .....-.... .+-=..+..|.|.|+| .+.+. . |+.++-
T Consensus 90 F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~-----~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav-~-dg~lyr 158 (236)
T 1tl2_A 90 FQFLFFDPNGY-LYAV--SKDKLYKASPPQSD-----TDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAV-H-GQQFYK 158 (236)
T ss_dssp CSEEEECTTSC-EEEE--ETTEEEEESCCCST-----TCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEE-E-TTEEEE
T ss_pred ceEEEECCCCC-EEEe--CCCEEEEeCCCcCC-----CCceeccccEeccCCCCceEEEEECCCc-eEEEE-e-CCcEEe
Confidence 46788999994 7776 46988877642100 1111100011 1111467999999998 44444 4 888654
Q ss_pred EecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCc
Q psy4577 325 WDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKK 361 (384)
Q Consensus 325 wd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~ 361 (384)
+-..+... ..++.....+. .....-.-+.|.|++..
T Consensus 159 ~~~P~~~~-~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 159 ALPPVSNQ-DNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp ECCCSSTT-CCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred cCCCCCCC-cccccccceeccCCcceEEEEEECCCCcE
Confidence 33322211 11111111121 22234455667777754
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=73.65 E-value=37 Score=27.98 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEE-EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLV-FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
.+..+.+.+++ .+++.+ .+|.|+. .|- -..... ...++...+..+++.|++ .+++.+. +|.++.
T Consensus 123 ~~~~i~~~~~~-~~~~~~-~~g~v~~S~Dg---------G~tW~~--~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~ 187 (327)
T 2xbg_A 123 SPRLIKALGNG-SAEMIT-NVGAIYRTKDS---------GKNWQA--LVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYS 187 (327)
T ss_dssp CEEEEEEEETT-EEEEEE-TTCCEEEESST---------TSSEEE--EECSCCCCEEEEEECTTS-CEEEEET-TSSEEE
T ss_pred CeEEEEEECCC-CEEEEe-CCccEEEEcCC---------CCCCEE--eecCCCcceEEEEEcCCC-cEEEEEC-CCcEEE
Confidence 35566666666 466655 4565432 221 112222 223445678999999987 5766554 455443
No 310
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.60 E-value=47 Score=29.16 Aligned_cols=114 Identities=9% Similarity=-0.020 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee-----c----CCCCceEEEEeCCC----CC
Q psy4577 245 GEVNRARYMPQNP-CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL-----R----GHQKEGYGLSWNPS----LN 310 (384)
Q Consensus 245 ~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~----~h~~~i~~~~~s~~----~~ 310 (384)
..-..++|.|++. ++|++ ...|.|++++..... ...++..+ . +.......|+|+|+ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~-------~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~- 84 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEI-------FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG- 84 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCB-------CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCe-------eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-
Confidence 3457899999984 36665 678999999743110 01111111 1 12456889999996 4
Q ss_pred CeEEEeeCC------------CcEEEEecCCCCCC---Cccccceeeee--ccCCcEeEEEEecCCCccccccc
Q psy4577 311 GYLLSASDD------------HTICLWDINATPKE---NRVIDAKTIFT--GHTAVVELELIERLTKKADPVCT 367 (384)
Q Consensus 311 ~~l~s~s~D------------g~i~iwd~~~~~~~---~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~~c~ 367 (384)
.++++-+.+ ..|.-|.+...... ......+..+. .....-..|+|.|||..-.++..
T Consensus 85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 455554422 14444666532110 00111222222 22234678999999976555533
No 311
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=72.64 E-value=59 Score=29.90 Aligned_cols=74 Identities=8% Similarity=-0.081 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW 325 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw 325 (384)
..+.|++++.+++++.+=+..+.|...++. +..... .....-....+|+... + .++.+=.....|...
T Consensus 478 ~P~gla~D~~~~~LYw~D~~~~~I~~~~~d---------G~~r~~-~~~~~~~~P~glav~~-~-~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 478 KPIALALDSRLGKLFWADSDLRRIESSDLS---------GANRIV-LEDSNILQPVGLTVFE-N-WLYWIDKQQQMIEKI 545 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEE-EECSSCSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred CccEEEEeCCCCEEEEEeCCCCEEEEEeCC---------CCceEE-EEcCCCCCcEEEEEEC-C-EEEEEECCCCeEEEE
Confidence 468899999876677666667889999984 333221 1112333467787765 3 466666677888888
Q ss_pred ecCCCC
Q psy4577 326 DINATP 331 (384)
Q Consensus 326 d~~~~~ 331 (384)
|..+++
T Consensus 546 ~k~~G~ 551 (628)
T 4a0p_A 546 DMTGRE 551 (628)
T ss_dssp ETTSSS
T ss_pred ECcCCC
Confidence 888765
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=70.49 E-value=46 Score=27.77 Aligned_cols=50 Identities=6% Similarity=-0.025 Sum_probs=37.1
Q ss_pred CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE
Q psy4577 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI 355 (384)
Q Consensus 298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 355 (384)
+--.++..|+.. ..+.--..-|.|+++|++++. ++..-+-....|-..+-
T Consensus 260 DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt-------~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 260 DFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT-------CIYMNRISGETIFVTAP 309 (365)
T ss_dssp CCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEE
T ss_pred CceEEEEecccC-CEEEEEeCCcEEEEEEcccCc-------EEEEeccCCCceEEecc
Confidence 344577778775 578888888999999999998 77766655666654443
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=67.79 E-value=75 Score=29.15 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL 324 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i 324 (384)
...++|++++.+.+++.+=+..+.|..+++. +..... .+.+.-....+|+...+ .++.|-...+.|..
T Consensus 479 ~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d---------G~~~~~-~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~ 546 (619)
T 3s94_A 479 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTD---------GTGRRV-LVEDKIPHIFGFTLLGD--YVYWTDWQRRSIER 546 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEESS---------SCCCEE-EEECCCCSSCCEEEETT--EEEEECTTSSCEEE
T ss_pred CCCeeeEEcccCCEEEEEECCCCEEEEEecC---------CCceEE-EeccCCCCcEEEEEECC--EEEEeecCCCeEEE
Confidence 3467899998766677776677888888874 332221 11122222345555433 45566556677887
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
-|..++.
T Consensus 547 ~~k~~g~ 553 (619)
T 3s94_A 547 VHKRSAE 553 (619)
T ss_dssp EESSSCC
T ss_pred EEcCCCc
Confidence 7877763
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=66.82 E-value=56 Score=27.34 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=40.4
Q ss_pred ceeeecCCCCceEEEEeC-------CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceee-eeccCCcEeEEEEecCCC
Q psy4577 289 PDLRLRGHQKEGYGLSWN-------PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI-FTGHTAVVELELIERLTK 360 (384)
Q Consensus 289 ~~~~~~~h~~~i~~~~~s-------~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~ 360 (384)
|+..+.........++|. .+| .++++.-..+.|...++..... .. .... +.+-...+.++++.|||.
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~---~~-~~~~~~~~~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNME---VR-KISTFFKNVFGRLRDVVIDDDGG 324 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGC---EE-EEEEECTTTSCCEEEEEECTTSC
T ss_pred CEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCc---cc-ceeeeccCCCCCeeEEEECCCCc
Confidence 444442223357788883 466 5777766778888888875321 00 0112 222245789999999996
Q ss_pred c
Q psy4577 361 K 361 (384)
Q Consensus 361 ~ 361 (384)
.
T Consensus 325 l 325 (354)
T 3a9g_A 325 I 325 (354)
T ss_dssp E
T ss_pred E
Confidence 4
No 315
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=65.89 E-value=59 Score=27.27 Aligned_cols=32 Identities=3% Similarity=0.154 Sum_probs=23.1
Q ss_pred cceEEEEE--ccC-CCcEEEEEecCCeEEEEEccc
Q psy4577 53 AKISDFSW--NPN-EPWVICSVSEDNIMQILSVVC 84 (384)
Q Consensus 53 ~~V~~l~~--~~~-~~~~l~s~s~D~~i~vwd~~~ 84 (384)
..+..+++ +|. +..+++....+|.+..|++..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 46777888 664 443566778889999999853
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.81 E-value=6.9 Score=38.13 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=27.8
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.+.+++..++. .+++|-+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCC
Confidence 56778888886 699999999999999999885
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=63.83 E-value=64 Score=26.94 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=41.1
Q ss_pred cCCceEEEEEcC-------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCCCCeEE
Q psy4577 243 HEGEVNRARYMP-------QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSLNGYLL 314 (384)
Q Consensus 243 ~~~~v~~v~~~p-------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~~~~l~ 314 (384)
+......++|.. ++ .++++.-..+.|...++. .+....... +......+..+++.||| .+++
T Consensus 269 ~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv 338 (353)
T 2g8s_A 269 DSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVN--------GDKVTEDGRILTDRGQRIRDVRTGPDG-YLYV 338 (353)
T ss_dssp SCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEE--------TTEEEEEEEESGGGCCCEEEEEECTTS-CEEE
T ss_pred CCcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeC--------CCeEeeeEEcccCCCCceeEEEECCCC-cEEE
Confidence 345677888864 35 477776677888877774 221111111 22333578999999999 4555
Q ss_pred E-eeCCCcE
Q psy4577 315 S-ASDDHTI 322 (384)
Q Consensus 315 s-~s~Dg~i 322 (384)
+ -..+|.|
T Consensus 339 ~td~~~g~I 347 (353)
T 2g8s_A 339 LTDESSGEL 347 (353)
T ss_dssp EECSTTEEE
T ss_pred EEeCCCCEE
Confidence 4 3234443
No 318
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.80 E-value=18 Score=32.64 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=48.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577 2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS 81 (384)
Q Consensus 2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd 81 (384)
.++|||+.++++|-.+.++.|+|+++...--. .........+..... ---.-...+|.++|. ...|--.|..|..|+
T Consensus 329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~-~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~-aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA-GKLADPRDVIVGEPE-LGLGPLHTTFDGRGN-AYTTLFIDSQVVKWN 405 (638)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHHT-TCCSCGGGGEEECCB-CCSCEEEEEECSSSE-EEEEETTTTEEEEEE
T ss_pred eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh-ccccCcccceEeecc-CCCcccEEEECCCCc-eEeeeeecceEEEEe
Confidence 57899998778888899999999974210000 000000001111111 112456779999985 555667899999999
Q ss_pred ccc
Q psy4577 82 VVC 84 (384)
Q Consensus 82 ~~~ 84 (384)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 965
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=56.06 E-value=89 Score=26.12 Aligned_cols=113 Identities=8% Similarity=0.015 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcEEEEE-eCCCcEEEEecCCCCCC--------CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577 247 VNRARYMPQNPCVIATK-TPSSDVLVFDYTKHPSK--------PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS 317 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s 317 (384)
...++|+|++. ++++- +.|+.=.|--+.....- ....+...|+..+..+......++|-. | .+++..-
T Consensus 204 p~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l 280 (347)
T 3das_A 204 VQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGL 280 (347)
T ss_dssp CCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEES
T ss_pred cceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccc
Confidence 45788888774 55442 22332333322211110 001123345555554444567788863 4 4666655
Q ss_pred CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577 318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV 365 (384)
Q Consensus 318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 365 (384)
..+.|....+....... .....+.+....+.+|+..|||....+.
T Consensus 281 ~~~~l~~v~~~~~~~~~---~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 281 RGERLWRIPLKGTAAAA---DPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp TTCSEEEEEEETTEESS---CCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred cCCEEEEEEecCCceec---ceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 66677666765442000 0222334445789999999999765443
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.92 E-value=1.6e+02 Score=28.73 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q psy4577 245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 276 (384)
Q Consensus 245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~ 276 (384)
..+.+++..++.. ++.+-+.|+++|+|++..
T Consensus 236 ~~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t 266 (950)
T 4gq2_M 236 NTIISMIFLSTYN-VLVMLSLDYKLKVLDLST 266 (950)
T ss_dssp TCEEEEEEETTTT-EEEEEETTCEEEEEETTT
T ss_pred ceEEEEeecCCCc-EEEEEECCCEEEEEECCC
Confidence 3566777777764 888899999999999873
No 321
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=54.42 E-value=28 Score=31.85 Aligned_cols=48 Identities=6% Similarity=-0.121 Sum_probs=31.8
Q ss_pred CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc-EeEEEEecCCCccccc
Q psy4577 311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VELELIERLTKKADPV 365 (384)
Q Consensus 311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~~~~ 365 (384)
.+++.++.||.++.||.++++ .+-.++-.... ..-+.|..+|++...+
T Consensus 485 g~vf~gt~dg~l~A~D~~tG~-------~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 485 DLVFYGTLDGYLKARDSDTGD-------LLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp TEEEEECTTSEEEEEETTTCC-------EEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCC-------EEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 577779999999999999998 76666532211 1224556666644433
No 322
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.93 E-value=8.3 Score=38.48 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=26.2
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.+.+++..++. .++++-+.|+++|||++.+++
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCC
Confidence 34556666776 799999999999999999885
No 323
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.73 E-value=40 Score=30.71 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=36.0
Q ss_pred eEEEEeCCCCCCeEEEeeCC------------CcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCccc
Q psy4577 300 GYGLSWNPSLNGYLLSASDD------------HTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKAD 363 (384)
Q Consensus 300 i~~~~~s~~~~~~l~s~s~D------------g~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~ 363 (384)
.-.|+|+|.| ++++.-..+ ..+.+.+..+++ ..+.+.++ .+.++.++|+||++.+.
T Consensus 478 PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-------~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 478 PDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-------IRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-------EEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCe-------EEEEEeCCCCccCcCeeECCCCCEEE
Confidence 3568999998 666654432 234444555554 44445554 35799999999998654
No 324
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.60 E-value=20 Score=33.39 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATP 331 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~ 331 (384)
.|.++.+. . .+|++-+.|.++|+|++++++
T Consensus 223 ~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 223 VISCKLFH--E-RYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EEEEEEET--T-TEEEEEETTCEEEEEETTTTE
T ss_pred eEEEeccC--C-cEEEEEEcCCeEEEEEcCCCc
Confidence 45555553 3 699999999999999999986
No 325
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.97 E-value=44 Score=29.34 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577 299 EGYGLSWNPSLNGYLLSASDDHTICLWDIN 328 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~ 328 (384)
.-+.|+|.|+|...|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 457899999983134444678999999754
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=40.86 E-value=2.9e+02 Score=27.69 Aligned_cols=84 Identities=8% Similarity=-0.059 Sum_probs=47.3
Q ss_pred EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEE---eCCCC------
Q psy4577 240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLS---WNPSL------ 309 (384)
Q Consensus 240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~---~s~~~------ 309 (384)
...+...++++.|-.++ .++.+..+|.|.+.......... .+..+....-.-| ...|+++. +.+.+
T Consensus 965 ~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~--~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~ 1040 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDSAATTD--EERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST 1040 (1158)
T ss_dssp ECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECTTCCST--TGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred eecccccEEEEEEEccC--cEEEEcCCCcEEEEecCCCCCCc--cccceeeeEEEEeCCCcEeeEEeeeeecCCCccccc
Confidence 33456678888887554 56778999999999886532211 1111111111223 33567765 33322
Q ss_pred --CCeEEEeeCCCcEEEEec
Q psy4577 310 --NGYLLSASDDHTICLWDI 327 (384)
Q Consensus 310 --~~~l~s~s~Dg~i~iwd~ 327 (384)
...++-++.+|+|-+.-.
T Consensus 1041 ~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CEEEEEEEEETTSCEEEEEE
T ss_pred cccceEEEEecCCEEEEEEE
Confidence 124677778888887643
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=37.45 E-value=70 Score=26.07 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=34.2
Q ss_pred EEcCCCCcEEEEE-eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE-EeeCCCcEEEEecC
Q psy4577 251 RYMPQNPCVIATK-TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL-SASDDHTICLWDIN 328 (384)
Q Consensus 251 ~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~-s~s~Dg~i~iwd~~ 328 (384)
.|+++++.++.+- +.++.-.||.+.. .+.. ...+..+.. .+|+|++ +.|+ +.....+|.+-++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~-------dGs~--~~~lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRI-------DGEE--KKKIKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEET-------TSCC--CEEEESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEEC-------CCCC--eEEEeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5677776444443 1344444444432 2222 123333322 4567787 4555 44346788888877
Q ss_pred CCC
Q psy4577 329 ATP 331 (384)
Q Consensus 329 ~~~ 331 (384)
.+.
T Consensus 176 g~~ 178 (302)
T 3s25_A 176 SQS 178 (302)
T ss_dssp TTE
T ss_pred CCC
Confidence 654
No 328
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.56 E-value=1.3e+02 Score=27.46 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCcEEEEEeCC----------CcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEEeCCCCCCeEEE
Q psy4577 247 VNRARYMPQNPCVIATKTPS----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 247 v~~v~~~p~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~s~~~~~~l~s 315 (384)
.-.|+|+|.|. ++++-..+ +.-.+|-.... .+...+ .+.++ ...++.++|+||+ +.|+.
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~------~g~~~r--f~~~P~gaE~TG~~fspDg-~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPA------TGEIRR--FMVGPIGCEVTGISFSPDQ-KTLFV 547 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTT------TCCEEE--EEECCTTCEEEEEEECTTS-SEEEE
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCC------CCeEEE--EEeCCCCccCcCeeECCCC-CEEEE
Confidence 35689999995 55543322 11233333210 333333 33444 3589999999998 55544
Q ss_pred e
Q psy4577 316 A 316 (384)
Q Consensus 316 ~ 316 (384)
.
T Consensus 548 n 548 (592)
T 3zwu_A 548 G 548 (592)
T ss_dssp E
T ss_pred E
Confidence 3
No 329
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.45 E-value=1.1e+02 Score=27.85 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=37.3
Q ss_pred ceEEEEeCCCCCCeEE-EeeC-----------CCcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCccccc
Q psy4577 299 EGYGLSWNPSLNGYLL-SASD-----------DHTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKADPV 365 (384)
Q Consensus 299 ~i~~~~~s~~~~~~l~-s~s~-----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~ 365 (384)
....|.|.++| .+.+ |=.. ...|..++..+++ ....+.+. ...++.++|+||++.+...
T Consensus 477 sPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-------l~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-------IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-------EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCe-------EEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45679999998 5555 4221 1256666666664 44444433 3568999999999865443
No 330
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.10 E-value=22 Score=35.48 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577 54 KISDFSWNPNEPWVICSVSEDNIMQILSVVCVE 86 (384)
Q Consensus 54 ~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 86 (384)
.+.+++..++.. ++++-+.|+++|+|++.+++
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCC
Confidence 455666677777 77899999999999998874
No 331
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.79 E-value=54 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577 54 KISDFSWNPNEPWVICSVSEDNIMQILSVVCVE 86 (384)
Q Consensus 54 ~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 86 (384)
.|.++.+. .. ++++-+.|+++|+|++.+++
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTE
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCc
Confidence 46665553 45 77899999999999999874
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=32.38 E-value=1.1e+02 Score=24.51 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC-----cEEE
Q psy4577 255 QNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH-----TICL 324 (384)
Q Consensus 255 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg-----~i~i 324 (384)
++ .+++.|+.+ ..+.+||.. ......+..+.........+.+ ++ .+++.|+.++ .+.+
T Consensus 204 ~~-~iyv~GG~~~~~~~~~~~~yd~~--------~~~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~ 271 (302)
T 2xn4_A 204 NN-LLYAVGGHDGPLVRKSVEVYDPT--------TNAWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEY 271 (302)
T ss_dssp TT-EEEEECCBSSSSBCCCEEEEETT--------TTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEE
T ss_pred CC-EEEEECCCCCCcccceEEEEeCC--------CCCEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEE
Confidence 45 477777754 368888886 3333322222211111112222 44 5777777664 4788
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
||+.+.+
T Consensus 272 yd~~~~~ 278 (302)
T 2xn4_A 272 YNPTTDK 278 (302)
T ss_dssp EETTTTE
T ss_pred EcCCCCe
Confidence 8887653
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=31.37 E-value=96 Score=24.75 Aligned_cols=65 Identities=9% Similarity=-0.048 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-----CcEEE
Q psy4577 255 QNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-----HTICL 324 (384)
Q Consensus 255 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-----g~i~i 324 (384)
++ .+++.|+.+ ..+.+||+. +.....+..+.........+.+ ++ .+++.|+.+ ..|.+
T Consensus 206 ~~-~i~v~GG~~~~~~~~~v~~yd~~--------~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~ 273 (301)
T 2vpj_A 206 ND-HIYVVGGFDGTAHLSSVEAYNIR--------TDSWTTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIEC 273 (301)
T ss_dssp TT-EEEEECCBCSSSBCCCEEEEETT--------TTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEE
T ss_pred CC-EEEEEeCCCCCcccceEEEEeCC--------CCcEEECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEE
Confidence 34 477777754 468889986 3333332222211111222222 44 577777765 45778
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
||+++.+
T Consensus 274 yd~~~~~ 280 (301)
T 2vpj_A 274 YDPIIDS 280 (301)
T ss_dssp EETTTTE
T ss_pred EcCCCCe
Confidence 8887653
No 334
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=29.58 E-value=2.1e+02 Score=22.73 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=35.9
Q ss_pred CCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-----CcEEE
Q psy4577 255 QNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-----HTICL 324 (384)
Q Consensus 255 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-----g~i~i 324 (384)
++ .+++.|+.+ ..+.+||.. ......+..+.........+.+ ++ .+++.|+.+ ..+.+
T Consensus 200 ~~-~i~v~GG~~~~~~~~~~~~yd~~--------~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~ 267 (306)
T 3ii7_A 200 KD-KIFAVGGQNGLGGLDNVEYYDIK--------LNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILE 267 (306)
T ss_dssp TT-EEEEECCEETTEEBCCEEEEETT--------TTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEE
T ss_pred CC-EEEEEeCCCCCCCCceEEEeeCC--------CCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEE
Confidence 45 477777654 357888876 3333332222222222223333 44 677888754 56888
Q ss_pred EecCCCC
Q psy4577 325 WDINATP 331 (384)
Q Consensus 325 wd~~~~~ 331 (384)
||+.+.+
T Consensus 268 yd~~~~~ 274 (306)
T 3ii7_A 268 YNTETDK 274 (306)
T ss_dssp EETTTTE
T ss_pred EcCCCCe
Confidence 8887753
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.57 E-value=2.9e+02 Score=24.27 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=37.6
Q ss_pred CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577 298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE 356 (384)
Q Consensus 298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 356 (384)
+--.++..|+.. ..+.--..-|.|+++|+.++. ++..-+-....|-..+-+
T Consensus 259 DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt-------~i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 259 DFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT-------CIYMNRISGETIFVTAPH 309 (494)
T ss_dssp CCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEEE
T ss_pred CceeEEEecccC-CEEEEEecCceEEEEecccce-------eeeeecccCCceEEeccc
Confidence 345578888876 688888889999999999998 777665555666544443
No 336
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=28.57 E-value=56 Score=24.26 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=27.6
Q ss_pred ccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577 52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV 85 (384)
Q Consensus 52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~ 85 (384)
.+.+.++.|...+.+-|++.+.++++.++|++-|
T Consensus 118 ~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~G 151 (188)
T 1ukf_A 118 RKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLG 151 (188)
T ss_dssp CEEEEEEEETTTEEEEEEEEEETTEEEEEETTTE
T ss_pred CceEEEEEecCCCceeEEeccCCCeEEEeCCCCc
Confidence 4567788888776667888888999999999875
No 337
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.63 E-value=1.7e+02 Score=26.54 Aligned_cols=19 Identities=11% Similarity=0.489 Sum_probs=14.9
Q ss_pred cceEEEEEccCCCcEEEEE
Q psy4577 53 AKISDFSWNPNEPWVICSV 71 (384)
Q Consensus 53 ~~V~~l~~~~~~~~~l~s~ 71 (384)
..++.++|+||++.++++.
T Consensus 531 aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 531 CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEEECTTSSEEEEEE
T ss_pred ccccCCEECCCCCEEEEEE
Confidence 4689999999999565543
No 338
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=26.33 E-value=1.4e+02 Score=28.31 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEEeCCCCCCeEEEe
Q psy4577 244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLSWNPSLNGYLLSA 316 (384)
Q Consensus 244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~s~~~~~~l~s~ 316 (384)
.+.|.+|+++|.++..+..++..+.|...+=. -...+++....+ ....|.+|+++|..+..+..+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--------G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--------TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--------TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--------CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 46799999999866667777777776655411 112222211011 124689999998533333333
No 339
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=25.48 E-value=1.6e+02 Score=23.45 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=33.3
Q ss_pred cEEEEEeCC----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC------CcEEEEec
Q psy4577 258 CVIATKTPS----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD------HTICLWDI 327 (384)
Q Consensus 258 ~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D------g~i~iwd~ 327 (384)
.+++.|+.+ ..+.+||.. ......+..+......-..+.+ ++ .+++.|+.+ ..+.+||.
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~--------~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVV--------KDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETT--------TTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEET
T ss_pred EEEEEeCCCCCCcceEEEEeCC--------CCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeC
Confidence 467777654 567788875 3333332222221111222222 44 577777765 46888888
Q ss_pred CCC
Q psy4577 328 NAT 330 (384)
Q Consensus 328 ~~~ 330 (384)
.+.
T Consensus 126 ~~~ 128 (306)
T 3ii7_A 126 RTE 128 (306)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 340
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=22.56 E-value=2.5e+02 Score=26.38 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEEeCCCCCCeEEE
Q psy4577 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLSWNPSLNGYLLS 315 (384)
Q Consensus 246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~s~~~~~~l~s 315 (384)
.|..|+++|.++..+..+...+.|+..+=. -...+++....+ ....|.+|+++|..+..++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~--------G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v 89 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS--------TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYI 89 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT--------TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC--------CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEE
Confidence 799999999865566667766766655421 112222211111 12358999999854344433
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=21.79 E-value=2.2e+02 Score=22.73 Aligned_cols=64 Identities=6% Similarity=-0.037 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-----CcEEE
Q psy4577 255 QNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-----HTICL 324 (384)
Q Consensus 255 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-----g~i~i 324 (384)
++ .+++.|+.+ ..+.+||.. ......+..+......-..+.+ ++ .+++.|+.+ ..+.+
T Consensus 168 ~~-~iyv~GG~~~~~~~~~~~~yd~~--------~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 168 NR-LLYAVGGFDGTNRLNSAECYYPE--------RNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETT--------TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEE
T ss_pred CC-EEEEEeCCCCCCcCceEEEEeCC--------CCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEE
Confidence 44 477777654 458888875 3332222222211111222333 44 577777765 56899
Q ss_pred EecCCC
Q psy4577 325 WDINAT 330 (384)
Q Consensus 325 wd~~~~ 330 (384)
||+.+.
T Consensus 236 yd~~~~ 241 (308)
T 1zgk_A 236 YDVETE 241 (308)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 998775
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=21.39 E-value=6.3e+02 Score=25.36 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=35.8
Q ss_pred ceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCeEEEEEcc
Q psy4577 9 TILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQILSVV 83 (384)
Q Consensus 9 ~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~vwd~~ 83 (384)
.++|.|.. |++|+|+++.... ......+.+ .....++.+.. .+..+|..|-.||.+.-+.+.
T Consensus 572 ~~~aVg~~~d~tv~I~sL~~l~------------~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 572 PLCAIGLWTDISARILKLPSFE------------LLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp SEEEEEETTTTEEEEEETTTCC------------EEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred cEEEEEECCCCEEEEEECCCCC------------eEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 47899987 9999999997521 111112221 11333443321 233356688889988776654
No 343
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.92 E-value=2.6e+02 Score=24.71 Aligned_cols=76 Identities=11% Similarity=-0.103 Sum_probs=42.2
Q ss_pred ceEEEEEcCC----C-CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec--CCCCceEEEEeCCCCCCeEEEeeC
Q psy4577 246 EVNRARYMPQ----N-PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR--GHQKEGYGLSWNPSLNGYLLSASD 318 (384)
Q Consensus 246 ~v~~v~~~p~----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~s~~~~~~l~s~s~ 318 (384)
..++|+...- + -..+..|+.+|.|.-.-+....... ......+..+. ....+|..|.++++. .+|..++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~--~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~ 481 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWH--DLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGST 481 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-------------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCcc--ccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEEC
Confidence 4566655432 2 2467788999988654332110000 00111122222 234689999999997 78888888
Q ss_pred CCcEEE
Q psy4577 319 DHTICL 324 (384)
Q Consensus 319 Dg~i~i 324 (384)
++.++|
T Consensus 482 ~~V~~v 487 (495)
T 1q47_A 482 AGVAQL 487 (495)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 776654
Done!