BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4578
(860 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S +DD + +WD + H V + HTA V ++++ E + + AD
Sbjct: 201 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 254
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 255 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 34/194 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GSADKT + +WD R N+ H+ ++H E+ + ++P++E ILA
Sbjct: 298 GSADKT---------------VALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 746 TGSADKTVALWDLRNLK---------------LKLHSFESHKDEIFQVQWSPHNETILAS 790
+ D+ + +WDL + L +H H +I W+P+ I+ S
Sbjct: 341 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICS 398
Query: 791 SGTDRRLHVWDLSK 804
D + VW +++
Sbjct: 399 VSEDNIMQVWQMAE 412
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 41/200 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + ++AT + ++++D H
Sbjct: 129 HEGEVNRARYMPQNACVIATKTPSS---------------DVLVFDYTKHPSKPEPSGEC 173
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 771
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 232
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 281
Query: 832 ISDFSWNPNEPWVICSVSED 851
++ S+NP +++ + S D
Sbjct: 282 VNCLSFNPYSEFILATGSAD 301
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEV 670
+ V W +E++ S D++L +WD + + T DA HTA++
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 671 NCLSFNPYSEYILATGSADK 690
+ S+NP +I+ + S D
Sbjct: 384 SDFSWNPNEPWIICSVSEDN 403
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829
+H+ E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 128 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK--HPSKPEPSGECQPDLRL--RGHQ 183
Query: 830 AKISDFSWNPNEPWVICSVSEDNIM 854
+ SWNPN + S S+D+ +
Sbjct: 184 KEGYGLSWNPNLNGYLLSASDDHTI 208
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 323 bits (827), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S +DD + +WD + H V + HTA V ++++ E + + AD
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 252
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 253 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 34/194 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GSADKT + +WD R N+ H+ ++H E+ + ++P++E ILA
Sbjct: 296 GSADKT---------------VALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 746 TGSADKTVALWDLRNLK---------------LKLHSFESHKDEIFQVQWSPHNETILAS 790
+ D+ + +WDL + L +H H +I W+P+ I+ S
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICS 396
Query: 791 SGTDRRLHVWDLSK 804
D + VW +++
Sbjct: 397 VSEDNIMQVWQMAE 410
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 41/200 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + ++AT + ++++D H
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSS---------------DVLVFDYTKHPSKPEPSGEC 171
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 771
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 230
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 279
Query: 832 ISDFSWNPNEPWVICSVSED 851
++ S+NP +++ + S D
Sbjct: 280 VNCLSFNPYSEFILATGSAD 299
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEV 670
+ V W +E++ S D++L +WD + + T DA HTA++
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 671 NCLSFNPYSEYILATGSADK 690
+ S+NP +I+ + S D
Sbjct: 382 SDFSWNPNEPWIICSVSEDN 401
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829
+H+ E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK--HPSKPEPSGECQPDLRL--RGHQ 181
Query: 830 AKISDFSWNPNEPWVICSVSEDNIM 854
+ SWNPN + S S+D+ +
Sbjct: 182 KEGYGLSWNPNLNGYLLSASDDHTI 206
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 322 bits (826), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S +DD + +WD + H V + HTA V ++++ E + + AD
Sbjct: 203 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 256
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 257 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 34/194 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAWHLLHESLFGSVADDQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GSADKT + +WD R N+ H+ ++H E+ + ++P++E ILA
Sbjct: 300 GSADKT---------------VALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 746 TGSADKTVALWDLRNLK---------------LKLHSFESHKDEIFQVQWSPHNETILAS 790
+ D+ + +WDL + L +H H +I W+P+ I+ S
Sbjct: 343 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICS 400
Query: 791 SGTDRRLHVWDLSK 804
D + VW +++
Sbjct: 401 VSEDNIMQVWQMAE 414
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 41/200 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + ++AT + ++++D H
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSS---------------DVLVFDYTKHPSKPEPSGEC 175
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 771
+P + H E LS+NP L + S D T+ LWD+ N K H F H
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGH 234
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831
+ V W +E++ S D++L +WD + + + HTA+
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----------AHTAE 283
Query: 832 ISDFSWNPNEPWVICSVSED 851
++ S+NP +++ + S D
Sbjct: 284 VNCLSFNPYSEFILATGSAD 303
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------------HTAEV 670
+ V W +E++ S D++L +WD + + T DA HTA++
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 671 NCLSFNPYSEYILATGSADK 690
+ S+NP +I+ + S D
Sbjct: 386 SDFSWNPNEPWIICSVSEDN 405
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829
+H+ E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 130 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK--HPSKPEPSGECQPDLRL--RGHQ 185
Query: 830 AKISDFSWNPNEPWVICSVSEDNIM 854
+ SWNPN + S S+D+ +
Sbjct: 186 KEGYGLSWNPNLNGYLLSASDDHTI 210
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 318 bits (815), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
S +DD + +WD + V K VDA HTA V +S++ E + + AD
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Score = 162 bits (409), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 34/194 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DV+WHLLHESLFGSVADDQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GSADKT + +WD R N+ H+ ++H E+ + ++P++E ILA
Sbjct: 292 GSADKT---------------VALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILA 334
Query: 746 TGSADKTVALWDLRNLK---------------LKLHSFESHKDEIFQVQWSPHNETILAS 790
+ D+ + +WDL + L +H H +I W+P+ ++ S
Sbjct: 335 SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVICS 392
Query: 791 SGTDRRLHVWDLSK 804
D + VW +++
Sbjct: 393 VSEDNIMQVWQMAE 406
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 774
H EVN + P + I+AT + V ++D N L+L H+ E
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRL---RGHQKE 179
Query: 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834
+ + W+P+ L S+ D + +WD+S + +E DA+ I GHTA + D
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK-------TIFTGHTAVVED 232
Query: 835 FSWNPNEPWVICSVSED 851
SW+ + SV++D
Sbjct: 233 VSWHLLHESLFGSVADD 249
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 39/202 (19%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + I+AT + ++++D H
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSS---------------DVLVFDYTKHPSKPDPSGEC 167
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS------FESHK 772
P + H E LS+NP L + S D T+ LWD+ + + F H
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 832
+ V W +E++ S D++L +WD + + + HTA++
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEV 276
Query: 833 SDFSWNPNEPWVICSVSEDNIM 854
+ S+NP +++ + S D +
Sbjct: 277 NCLSFNPYSEFILATGSADKTV 298
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWD-TRSHNVSKPSHTVD----------AHTAEVNC 672
+ V W +E++ S D++L +WD ++ P D HTA+++
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 673 LSFNPYSEYILATGSADK 690
S+NP +++ + S D
Sbjct: 380 FSWNPNEPWVICSVSEDN 397
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 173/223 (77%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
S +DD + +WD + K VDA H+A V ++++ E + + AD
Sbjct: 197 SASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS-VAD--- 250
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
DQKLMIWDTRS+ SKPSH VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 251 -----------DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 299
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
VALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 359
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 116/194 (59%), Gaps = 34/194 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAWHLLHESLFGSVADDQKLMIWDTRS+ SKPSH VDAHTAEVNCLSFNPYSE+ILAT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GSADKT + +WD R N+ HT ++H E+ + ++P++E ILA
Sbjct: 294 GSADKT---------------VALWDLR--NLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 746 TGSADKTVALWDLRNLK---------------LKLHSFESHKDEIFQVQWSPHNETILAS 790
+ D+ + +WDL + L +H H +I W+P+ ++ S
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVICS 394
Query: 791 SGTDRRLHVWDLSK 804
D + +W +++
Sbjct: 395 VSEDNIMQIWQMAE 408
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 41/203 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + +I+AT + ++++D H
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPS---------------SDVLVFDYTKHPAKPDPSGEC 169
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 771
P + H E LS+N L + S D TV LWD+ N K F H
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGH 228
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831
+ V W +E++ S D++L +WD + + P L+ HTA+
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLMIWD--------TRSNTTSKPSHLV---DAHTAE 277
Query: 832 ISDFSWNPNEPWVICSVSEDNIM 854
++ S+NP +++ + S D +
Sbjct: 278 VNCLSFNPYSEFILATGSADKTV 300
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/223 (69%), Positives = 171/223 (76%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
S +DD + +WD + K VDA H+A V ++++ E + + AD
Sbjct: 197 SASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS-VAD--- 250
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
DQKL IWDTRS+ SKPSH VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 251 -----------DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 299
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
VALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 359
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI Q
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 41/203 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH-------NVS 718
H EVN + P + +I+AT + ++++D H
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPS---------------SDVLVFDYTKHPAKPDPSGEC 169
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-------FESH 771
P + H E LS+N L + S D TV LWD+ N K F H
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGH 228
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831
+ V W +E++ S D++L +WD + + P L+ HTA+
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLXIWD--------TRSNTTSKPSHLV---DAHTAE 277
Query: 832 ISDFSWNPNEPWVICSVSEDNIM 854
++ S+NP +++ + S D +
Sbjct: 278 VNCLSFNPYSEFILATGSADKTV 300
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSH 722
+ AH EV C +F+ YI AT SADK K+ IWD+ + K H
Sbjct: 653 IKAHEDEVLCCAFSSDDSYI-ATCSADK---------------KVKIWDSAT---GKLVH 693
Query: 723 TVDAHTAEVNCLSF-NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781
T D H+ +VNC F N + +LATGS D + LWDL N K ++ H + + ++S
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFS 752
Query: 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTE------DAEDGPPE 820
P +E +LAS D L +WD+ E +S +ED PPE
Sbjct: 753 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED-PPE 795
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 23/128 (17%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-NPYSEYILATGSADKTQ 692
+S + + D+K+ IWD+ + K HT D H+ +VNC F N + +LATGS D
Sbjct: 669 DSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF- 724
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
L +WD N + +T+ HT VN F+P E +LA+ SAD T
Sbjct: 725 --------------LKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGT 766
Query: 753 VALWDLRN 760
+ LWD+R+
Sbjct: 767 LRLWDVRS 774
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 30/167 (17%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S F + +DDQ + +W+T+ V K S V +V F +LA + Q
Sbjct: 895 SSFLTASDDQTIRVWETK--KVCKNSAIVLKQEIDV---VFQENETMVLAVDNIRGLQLI 949
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+Y + A+V+C +P+ EY+ A G D +
Sbjct: 950 AGKTGQIDYLPE----------------------AQVSCCCLSPHLEYV-AFGDEDGAIK 986
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
+ +L N ++ S HK + +Q++ +T+++SS D + VW+
Sbjct: 987 IIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLISSS-EDSVIQVWN 1031
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSH 722
+ AH EV C +F+ YI AT SADK K+ IWD+ + K H
Sbjct: 660 IKAHEDEVLCCAFSSDDSYI-ATCSADK---------------KVKIWDSAT---GKLVH 700
Query: 723 TVDAHTAEVNCLSF-NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781
T D H+ +VNC F N + +LATGS D + LWDL N K ++ H + + ++S
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFS 759
Query: 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTE------DAEDGPPE 820
P +E +LAS D L +WD+ E +S +ED PPE
Sbjct: 760 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED-PPE 802
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 23/128 (17%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-NPYSEYILATGSADKTQ 692
+S + + D+K+ IWD+ + K HT D H+ +VNC F N + +LATGS D
Sbjct: 676 DSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF- 731
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
L +WD N + +T+ HT VN F+P E +LA+ SAD T
Sbjct: 732 --------------LKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGT 773
Query: 753 VALWDLRN 760
+ LWD+R+
Sbjct: 774 LRLWDVRS 781
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 30/167 (17%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S F + +DDQ + +W+T+ V K S V +V F +LA + Q
Sbjct: 902 SSFLTASDDQTIRVWETK--KVCKNSAIVLKQEIDV---VFQENETMVLAVDNIRGLQLI 956
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+Y + A+V+C +P+ EY+ A G D +
Sbjct: 957 AGKTGQIDYLPE----------------------AQVSCCCLSPHLEYV-AFGDEDGAIK 993
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
+ +L N ++ S HK + +Q++ +T+++SS D + VW+
Sbjct: 994 IIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLISSS-EDSVIQVWN 1038
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 76 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 138
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 139 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 195
Query: 815 EDGPP 819
+D PP
Sbjct: 196 DDNPP 200
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 94 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 148
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 149 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 190
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 191 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 247
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 42 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 156
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 157 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 213
Query: 815 EDGPP 819
+D PP
Sbjct: 214 DDNPP 218
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 92 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 146
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 147 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 188
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 189 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 245
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 40 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 154
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 155 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 211
Query: 815 EDGPP 819
+D PP
Sbjct: 212 DDNPP 216
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
TG KT +YD IWDT S K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
+D V+ + F+P +YILA + D T+ LWD K L ++ HK+E + +
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
+S + S D +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 39/199 (19%)
Query: 652 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXX 698
R KP++ T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS 65
Query: 699 X------------------XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 740
+ D+ L IWD S K T+ H+ V C +FNP S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQS 122
Query: 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +W
Sbjct: 123 NLIV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIW 179
Query: 801 DLSKIGEEQSTEDAEDGPP 819
D + G+ T +D PP
Sbjct: 180 DTAS-GQCLKTLIDDDNPP 197
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 128 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 170 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK- 226
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
G+ T +F ++FS + W++ S SEDN++
Sbjct: 227 GKCLKTYTGHKNEKYCIF---------ANFSVTGGK-WIV-SGSEDNLV 264
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 39/199 (19%)
Query: 652 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXX 698
R KP++ T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS 65
Query: 699 X------------------XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 740
+ D+ L IWD S K T+ H+ V C +FNP S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQS 122
Query: 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +W
Sbjct: 123 NLIV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIW 179
Query: 801 DLSKIGEEQSTEDAEDGPP 819
D + G+ T +D PP
Sbjct: 180 DTAS-GQCLKTLIDDDNPP 197
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 69 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 123
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 124 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 165
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 166 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 222
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 17 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 131
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 132 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 188
Query: 815 EDGPP 819
+D PP
Sbjct: 189 DDNPP 193
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 76 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 138
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 139 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 195
Query: 815 EDGPP 819
+D PP
Sbjct: 196 DDNPP 200
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 76 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 138
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 139 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 195
Query: 815 EDGPP 819
+D PP
Sbjct: 196 DDNPP 200
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 87 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 141
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 142 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 183
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 184 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 240
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 35 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I++ GS D++V
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS-GSFDESVR 149
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 150 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 206
Query: 815 EDGPP 819
+D PP
Sbjct: 207 DDNPP 211
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 70 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 124
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 125 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 166
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 167 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 223
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I++ GS D++V
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS-GSFDESVR 132
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 133 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 189
Query: 815 EDGPP 819
+D PP
Sbjct: 190 DDNPP 194
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 75 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 129
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 130 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 171
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 172 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 228
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 23 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 137
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 138 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 194
Query: 815 EDGPP 819
+D PP
Sbjct: 195 DDNPP 199
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 71 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 125
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 126 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 167
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 168 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 224
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 19 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I++ GS D++V
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS-GSFDESVR 133
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 134 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 190
Query: 815 EDGPP 819
+D PP
Sbjct: 191 DDNPP 195
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 70 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
TG KT +YD IWDT S K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
+D V+ + F+P +YILA + D T+ LWD K L ++ HK+E + +
Sbjct: 186 T--LIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 241
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
+S + S D +++W+L
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I++ GS D++V
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS-GSFDESVR 132
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 133 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 189
Query: 815 EDGPP 819
+D PP
Sbjct: 190 DDNPP 194
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
TG KT +YD IWDT S K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
+D V+ + F+P +YILA + D T+ LWD K L ++ HK+E + +
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
+S + S D +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 39/199 (19%)
Query: 652 RSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXX 698
R KP++ T+ HT V+ + F+P E+ LA SADK +F
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LAASSADKLIKIWGAYDGKFEKTIS 65
Query: 699 X------------------XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 740
+ D+ L IWD S K T+ H+ V C +FNP S
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQS 122
Query: 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
I+ +GS D++V +WD++ K L + +H D + V ++ + +++ SS D +W
Sbjct: 123 NLIV-SGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIW 179
Query: 801 DLSKIGEEQSTEDAEDGPP 819
D + G+ T +D PP
Sbjct: 180 DTAS-GQCLKTLIDDDNPP 197
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 66 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 120
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 121 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 162
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 163 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 219
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 14 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 128
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ K L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 129 IWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 185
Query: 815 EDGPP 819
+D PP
Sbjct: 186 DDNPP 190
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
TG KT +YD IWDT S K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
+D V+ + F+P +YILA + D T+ LWD K L ++ HK+E + +
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
+S + S D +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 135
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ + L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 136 IWDVKT-GMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 192
Query: 815 EDGPP 819
+D PP
Sbjct: 193 DDNPP 197
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
DVAW +L S +DD+ L IWD S K T+ H+ V C +FNP S I++
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
++D+ + IWD ++ K T+ AH+ V+ + FN I++
Sbjct: 128 ---------------GSFDESVRIWDVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ S D +WD + + + + V++SP+ + ILA++ D L +WD SK
Sbjct: 170 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNDLKLWDYSK 226
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADK---------TQFXXXXXX------------- 699
T+ HT V+ + F+P E+ LA+ SADK +F
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 700 -----XXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ D+ L IWD S K T+ H+ V C +FNP S I+ +GS D++V
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 135
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
+WD++ + L + +H D + V ++ + +++ SS D +WD + G+ T
Sbjct: 136 IWDVKT-GMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLID 192
Query: 815 EDGPP 819
+D PP
Sbjct: 193 DDNPP 197
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 44/217 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ ++ T+ H++ V ++F+P + I A+ S DKT
Sbjct: 320 SASDDKTVKLWNRNGQHL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKT------V 368
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
N + +L+ T+ H++ V ++F+P + I A+ S DKTV LW+
Sbjct: 369 KLWNRNGQLL-------------QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN- 413
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
RN +L L + H ++ V +SP ++TI AS+ D+ + +W+ +
Sbjct: 414 RNGQL-LQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRN--------------- 456
Query: 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
+LL GH++ + +++P+ I S S+D ++
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVK 492
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 28/163 (17%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKT
Sbjct: 197 SASDDKTVKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTI-ASASDDKT------V 245
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
N + +L+ T+ H++ VN ++F P + I A+ S DKTV LW+
Sbjct: 246 KLWNRNGQLL-------------QTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVKLWN- 290
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
RN +L L + H ++ V +SP +TI AS+ D+ + +W+
Sbjct: 291 RNGQL-LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN 331
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 44/217 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKT
Sbjct: 33 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKT------V 81
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
N + +L+ T+ H++ V ++F+P + I A+ S DKTV LW+
Sbjct: 82 KLWNRNGQLL-------------QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN- 126
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
RN +L L + H ++ V +SP +TI AS+ D+ + +W+ +
Sbjct: 127 RNGQL-LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRN--------------- 169
Query: 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
+LL GH++ + +++P+ I S S+D ++
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVK 205
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 44/217 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKT
Sbjct: 115 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKT------V 163
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
N + +L+ T+ H++ V ++F+P + I A+ S DKTV LW+
Sbjct: 164 KLWNRNGQLL-------------QTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN- 208
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
RN +L L + H + V +SP +TI AS+ D+ + +W+ +
Sbjct: 209 RNGQL-LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN--------------- 251
Query: 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
+LL GH++ ++ ++ P+ I S S+D ++
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQ-TIASASDDKTVK 287
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 44/217 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKT
Sbjct: 402 SASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDDQTI-ASASDDKT------V 450
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
N + +L+ T+ H++ V ++F+P + I A+ S DKTV LW+
Sbjct: 451 KLWNRNGQLL-------------QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN- 495
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
RN +L L + H + V +SP +TI AS+ D+ + +W+ +
Sbjct: 496 RNGQL-LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN--------------- 538
Query: 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
+LL GH++ + +++P+ I S S D ++
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVK 574
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 40/203 (19%)
Query: 653 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDT 712
SH K + ++AH++ V ++F+P + I A+ S DKT N + +L+
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTI-ASASDDKT------VKLWNRNGQLL---- 50
Query: 713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK 772
T+ H++ V ++F+P + I A+ S DKTV LW+ RN +L L + H
Sbjct: 51 ---------QTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQL-LQTLTGHS 98
Query: 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 832
+ V +SP +TI AS+ D+ + +W+ + +LL GH++ +
Sbjct: 99 SSVRGVAFSPDGQTI-ASASDDKTVKLWNRN---------------GQLLQTLTGHSSSV 142
Query: 833 SDFSWNPNEPWVICSVSEDNIMQ 855
+++P+ I S S+D ++
Sbjct: 143 WGVAFSPDGQ-TIASASDDKTVK 164
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 25/119 (21%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD+ + +W+ + T+ H++ V ++F+P + I A+ S DKT
Sbjct: 484 SASDDKTVKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTI-ASASDDKT------V 532
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
N + +L+ T+ H++ V ++F+P + I A+ S+DKTV LW+
Sbjct: 533 KLWNRNGQLL-------------QTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 16/157 (10%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT+ V C+ F+ EY LATG TQ D L+ + +K ++
Sbjct: 63 HTSVVCCVKFSNDGEY-LATGCNKTTQVYRVS------DGSLVARLSDDSAANKDPENLN 115
Query: 726 AHTAE-----VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780
++ + + F+P ++ LATG+ D+ + +WD+ N K+ + + H+ +I+ + +
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDY 173
Query: 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817
P + +++ SG DR + +WDL + G+ T EDG
Sbjct: 174 FPSGDKLVSGSG-DRTVRIWDL-RTGQCSLTLSIEDG 208
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 36/178 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S + D+ + IWD R+ S D V ++ +P +A GS D+
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRA------- 230
Query: 699 XXXNYDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ +WD+ + + + + H V + F + ++ +GS D++V
Sbjct: 231 --------VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVK 281
Query: 755 LWDLRNLKLKLHS-----------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
LW+L+N K S + HKD + V + ++E IL+ S DR + WD
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWD 338
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 652 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD 711
++ V K V HTA V +++ P+++ ++A+GS D T +M+W+
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCT---------------VMVWE 110
Query: 712 TRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH- 766
+ +P T++ HT V ++++P ++ +L + D + +WD+ L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
+ H D I+ V WS + ++ +S D+R+ V
Sbjct: 171 GPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 766
++ V K V HTA V +++ P+++ ++A+GS D TV +W++ + L L
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
+ E H + V W P + +L S+G D + VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
TG DK V L H + + W PHN+ ++AS D + VW++
Sbjct: 67 TGRVDKNVPL------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
G E + GHT ++ +W+P V+ S DN++
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYS 679
++D+AW ++++ S ++D +M+W+ + +P T++ HT V ++++P +
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 680 EYILATGSAD 689
+ +L + D
Sbjct: 144 QNVLLSAGXD 153
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 652 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD 711
++ V K V HTA V +++ P+++ ++A+GS D T +M+W+
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT---------------VMVWE 110
Query: 712 TRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH- 766
+ +P T++ HT V ++++P ++ +L + D + +WD+ L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
+ H D I+ V WS + ++ +S D+R+ V
Sbjct: 171 GPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 766
++ V K V HTA V +++ P+++ ++A+GS D TV +W++ + L L
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
+ E H + V W P + +L S+G D + VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
TG DK V L H + + W PHN+ ++AS D + VW++
Sbjct: 67 TGRVDKNVPL------------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
G E + GHT ++ +W+P V+ S DN++
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYS 679
++D+AW ++++ S ++D +M+W+ + +P T++ HT V ++++P +
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 680 EYILATGSAD 689
+ +L + D
Sbjct: 144 QNVLLSAGCD 153
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 50/211 (23%)
Query: 631 LLHESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG--- 686
L E+ F S + D+ L +WD R+ K H +EV ++F+P + IL+ G
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 687 -----------------------------------SADKTQFXXXXXXXXNYDQKLMIWD 711
SA+K Q +D +L +W+
Sbjct: 141 EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 712 TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH 771
T + +T AH + VN LS +P +YI ATG DK + +WD+ NL F++
Sbjct: 201 TNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTYPQREFDA- 254
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
I Q+ ++P + + + GTD+ + +++L
Sbjct: 255 GSTINQIAFNPKLQWV--AVGTDQGVKIFNL 283
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 704 DQKLMIW----DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759
D+ +MIW + ++ P + H V+ L+ + + + +++ S DKT+ LWDLR
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRLWDLR 106
Query: 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807
F H+ E++ V +SP N IL S+G +R + +W++ +GE
Sbjct: 107 T-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI--LGE 150
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 23/125 (18%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTQ 692
+ + + D+K+ IW++ + + HT D H+ +VNC F S + +LATGS+D
Sbjct: 675 DRFIATCSVDKKVKIWNSMT---GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF- 730
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
L +WD N + +T+ HT VN F+P + +LA+ SAD T
Sbjct: 731 --------------LKLWDL---NQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGT 772
Query: 753 VALWD 757
+ LWD
Sbjct: 773 LKLWD 777
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 44/196 (22%)
Query: 627 VAWHLLHESLFGSVADDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYS--EY 681
V W+ +F S + D+ L +WDT ++ +V TV +H +P S
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH-------HMSPVSTKHC 157
Query: 682 ILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
++A G+ K+ + D +S + S H + H E+ +S++P +
Sbjct: 158 LVAVGTRGP---------------KVQLCDLKSGSCS---HILQGHRQEILAVSWSPRYD 199
Query: 742 YILATGSADKTVALWDLRNLKLKLHSFESH---KDEIFQVQWSPHNETI----------- 787
YILAT SAD V LWD+R L + + H K + + + HN +
Sbjct: 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259
Query: 788 LASSGTDRRLHVWDLS 803
L + GTD R+ +W+ S
Sbjct: 260 LLTVGTDNRMRLWNSS 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 702 NYDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTVALW 756
++D+ L +WDT ++ +V TV +H +P S ++A G+ V L
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSH-------HMSPVSTKHCLVAVGTRGPKVQLC 171
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
DL++ H + H+ EI V WSP + ILA++ D R+ +WD+ + T D +
Sbjct: 172 DLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 817 G 817
G
Sbjct: 231 G 231
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 42/168 (25%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF------------ESHKDE 774
H +N L P + +G +D + L+DL N + + + H+
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIG-------EEQ---------STED----- 813
+ VQW PH+ + SS D+ L VWD + + EE ST+
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 814 AEDGPPELLF---------IHGGHTAKISDFSWNPNEPWVICSVSEDN 852
GP L I GH +I SW+P +++ + S D+
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTR----------SHNVSKPSHTVD----AHTAE 669
++ V+W ++ + + + D ++ +WD R HN K S V+ AH +
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN-GKKSQAVESANTAHNGK 247
Query: 670 VNCLSFNPYSEYILATGSADKTQF 693
VN L F ++L G+ ++ +
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRL 271
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
++ +YL + + I QLL + + VAW + E + +V ++ +WD +
Sbjct: 134 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 190
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
K + +H+A V LS+N YIL++GS ++D ++ H
Sbjct: 191 --KRLRNMTSHSARVGSLSWN---SYILSSGS--------RSGHIHHHDVRVA-----EH 232
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD---LRNLKLKLHSFESHK 772
+V+ T+ H+ EV L + P + LA+G D V +W + L +F H+
Sbjct: 233 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDL 802
+ V W P +LA+ G +DR + +W++
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
P T H V +++ P+ +LATG D+ + IW+ S
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-------------DRHIRIWNVCSGACL 325
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
VDAH+ + L Y E I G A + +W + K+ + H + +
Sbjct: 326 S---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSL 381
Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
SP T+ AS+ D L +W ++ + E + + IH G
Sbjct: 382 TMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
++ +YL + + I QLL + + VAW + E + +V ++ +WD +
Sbjct: 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 179
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
K + +H+A V LS+N YIL++GS ++D ++ H
Sbjct: 180 --KRLRNMTSHSARVGSLSWN---SYILSSGS--------RSGHIHHHDVRVA-----EH 221
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL---RNLKLKLHSFESHK 772
+V+ T+ H+ EV L + P + LA+G D V +W + L +F H+
Sbjct: 222 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDL 802
+ V W P +LA+ G +DR + +W++
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
P T H V +++ P+ +LATG D+ + IW+ S
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-------------DRHIRIWNVCSGACL 314
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
VDAH+ + L Y E I G A + +W + K+ + H + +
Sbjct: 315 S---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSL 370
Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
SP T+ AS+ D L +W ++ + E + + IH G
Sbjct: 371 TMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 706 KLMIWDTRSHNVSKPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
+L IWD R ++PS ++ ++C+ +P ++++ATG D +++WD+R +
Sbjct: 213 QLKIWDFRQQG-NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
+ ++H+ E+++V + P N L + D L WD S E+S+ LF
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSS----------LF 321
Query: 824 IHGGHTAKI 832
GG ++
Sbjct: 322 HQGGRSSTF 330
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 645 KLMIWDTRSHNVSKPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
+L IWD R ++PS ++ ++C+ +P ++++ATG D
Sbjct: 213 QLKIWDFRQQG-NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDG------------ 259
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
L IWD R + P + AH AE+ + F+P + L T S D ++ WD
Sbjct: 260 ---MLSIWDVRQGTM--PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
D L +WD + ++ HT +V ++F+ + I++ GS DKT
Sbjct: 107 DGTLRLWDLTTGTTTRR---FVGHTKDVLSVAFSSDNRQIVS-GSRDKT----------- 151
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNL 761
+ +W+T V K + ++H+ V+C+ F+P S I+ + DK V +W+L N
Sbjct: 152 ----IKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
KLK + H + V SP + ++ AS G D + +WDL++ G+ T D D L
Sbjct: 206 KLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDIINAL 262
Query: 822 LF 823
F
Sbjct: 263 CF 264
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
D L +WD + ++ HT +V ++F+ + I++ GS DKT
Sbjct: 84 DGTLRLWDLTTGTTTRR---FVGHTKDVLSVAFSSDNRQIVS-GSRDKT----------- 128
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNL 761
+ +W+T V K + ++H+ V+C+ F+P S I+ + DK V +W+L N
Sbjct: 129 ----IKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
KLK + H + V SP + ++ AS G D + +WDL++ G+ T D D L
Sbjct: 183 KLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDIINAL 239
Query: 822 LF 823
F
Sbjct: 240 CF 241
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 36/233 (15%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
++ +YL + + I QLL + + VAW + E + +V ++ +WD +
Sbjct: 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 99
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
K + +H+A V LS+N YIL++GS ++D ++ H
Sbjct: 100 --KRLRNMTSHSARVGSLSWN---SYILSSGSRSG--------HIHHHDVRVA-----EH 141
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD---LRNLKLKLHSFESHK 772
+V+ T+ H+ EV L + P + LA+G D V +W + L +F H+
Sbjct: 142 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
+ V W P +LA+ G +DR + +W++ G S DA +L+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQVCSILW 248
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
P T H V +++ P+ +LATG D+ + IW+ S
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-------------DRHIRIWNVCSGACL 234
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
VDAH+ + L Y E I G A + +W + K+ + H + +
Sbjct: 235 S---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSL 290
Query: 779 QWSPHNETILASSGTDRRLHVW 800
SP T+ AS+ D L +W
Sbjct: 291 TMSPDGATV-ASAAADETLRLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 37/200 (18%)
Query: 632 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--------------- 676
LHE S + D L +WD + + H + H A V C+ ++
Sbjct: 207 LHEKRVVSGSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 677 --PYSEYILAT--GSADKT---QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTA 729
P +E L T G ++ QF + D + +WD + N HT+ H +
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI---HTLTGHQS 320
Query: 730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETI 787
+ + + IL +G+AD TV +WD++ + L H+ + +Q+ N+
Sbjct: 321 LTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNF 374
Query: 788 LASSGTDRRLHVWDLSKIGE 807
+ +S D + +WDL K GE
Sbjct: 375 VITSSDDGTVKLWDL-KTGE 393
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 660 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD-TRSHNVS 718
S + H + + P E L TGS D+T ++WD T +S
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQT---------------CVLWDVTTGQRIS 194
Query: 719 K-PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 777
S HTA+V LS N + + +GS D TV LWDLR + ++ H+ +I
Sbjct: 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254
Query: 778 VQWSPHNETILASS--GTDR 795
V++ P + S GT R
Sbjct: 255 VKFFPDGQRFGTGSDDGTCR 274
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 35/183 (19%)
Query: 662 TVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPS 721
T+ H+ +V L + P +I++ + D +L++W+ + S+ +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSA----------------SQDGRLIVWNALT---SQKT 101
Query: 722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL-----RNLKLKLHS-FESHKDEI 775
H + H V +F P + + A G D ++++L R+ + + HK
Sbjct: 102 HAIKLHCPWVMECAFAPNGQSV-ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 835
Q+ P ET L + D+ +WD++ G+ S +E GHTA +
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSE--------FPSGHTADVLSL 211
Query: 836 SWN 838
S N
Sbjct: 212 SIN 214
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDLRNLK 762
D+ + +W+T S + H V+C+ F+P + + + + S DKTV +W+L N K
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822
L+ + H + V SP + ++ AS G D + +WDL++ + S E
Sbjct: 553 LR-STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE---------- 600
Query: 823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853
+ I ++PN W +C+ +E I
Sbjct: 601 -----ANSVIHALCFSPNRYW-LCAATEHGI 625
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTQFXXXX 697
S + D+ + +W+T S + H V+C+ F+P + + + + S DKT
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT------ 542
Query: 698 XXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
+ +W+ + K T+ HT V+ ++ +P + A+G D V LWD
Sbjct: 543 ---------VKVWNLSN---CKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWD 589
Query: 758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
L K KL+S E++ I + +SP+ + A+ T+ + +WDL
Sbjct: 590 LAEGK-KLYSLEANS-VIHALCFSPNRYWLCAA--TEHGIKIWDL 630
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
S+ S ++D + +WD + + + T+ HT V +SF+ +S +LA+ SAD T
Sbjct: 121 SVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFD-HSGKLLASCSADMT--- 173
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ +WD + + H H V+ +S P ++I++ S DKT+
Sbjct: 174 ------------IKLWDFQGFECIRTMH---GHDHNVSSVSIMPNGDHIVS-ASRDKTIK 217
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
+W+++ + +F H++ + V+ + T++AS D+ + VW
Sbjct: 218 MWEVQT-GYCVKTFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
D + +WD + + + T+ HT V +SF+ +S +LA+ SAD T+ LWD + +
Sbjct: 129 DATIKVWDYETGDFER---TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFEC 184
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
+ + H + V P+ + I+++S D+ + +W++
Sbjct: 185 -IRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEV 221
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759
D+ L +WD ++ K T++AH V L F+ + Y++ TGS D+TV +W+ R
Sbjct: 359 DKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWECR 410
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGS-ADK 690
+L S ++DQ + +W + + H V C+S+ P YS ATGS K
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 691 TQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD 750
+ + D+ + +WD + T+ H V + F+ ++IL+ D
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-D 359
Query: 751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
KT+ +WD +N K + + +H+ + + + ++ S D+ + VW+
Sbjct: 360 KTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGS-VDQTVKVWE 408
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT----------- 691
D + IWD N + + HT V CL Y E ++ TGS+D T
Sbjct: 152 DNTIKIWD---KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNTGEM 205
Query: 692 --------------QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN 737
+F + D+ + +WD S + H A VN + F+
Sbjct: 206 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 265
Query: 738 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797
+YI+ + S D+T+ +W+ + + + HK I +Q + + ++ S +D +
Sbjct: 266 --DKYIV-SASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQ---YRDRLVVSGSSDNTI 318
Query: 798 HVWDL 802
+WD+
Sbjct: 319 RLWDI 323
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
D + IWD N + + HT V CL Y E ++ TGS+D TV +WD+ N
Sbjct: 152 DNTIKIWD---KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDV-NTGE 204
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
L++ H + + +++ N ++ + DR + VWD++
Sbjct: 205 MLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA 241
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 632 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
+ + + + D+ + +WD S + H A VN + F+ +YI+ + S D+T
Sbjct: 221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV-SASGDRT 277
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 751
+ +W+T + + T++ H + CL Y + ++ +GS+D
Sbjct: 278 ---------------IKVWNTSTCEFVR---TLNGHKRGIACLQ---YRDRLVVSGSSDN 316
Query: 752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
T+ LWD+ L E H++ + +++ N+ I+ S D ++ VWDL
Sbjct: 317 TIRLWDI-ECGACLRVLEGHEELVRCIRFD--NKRIV-SGAYDGKIKVWDL 363
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 769
W H++ + H + V CL Y + + +G D T+ +WD L+ K
Sbjct: 116 WRCGRHSLQRI-HCRSETSKGVYCLQ---YDDQKIVSGLRDNTIKIWDKNTLECK-RILT 170
Query: 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811
H + +Q ++E ++ + +D + VWD++ GE +T
Sbjct: 171 GHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNT-GEMLNT 208
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXX 696
S +D + IWD RS S P T H A V +++ P+ +LATG
Sbjct: 232 LASGGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-------- 280
Query: 697 XXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-GSADKTVAL 755
D+++ W+ + +TVDA ++V L ++P+S+ I++T G D +++
Sbjct: 281 -----TMDKQIHFWNAAT---GARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 756 WDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
W + L K +H + SP IL+++ +D L W
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFW 376
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 782
T+ H A V CLS+N ++L++GS + D+R ++ + + H E+ + W
Sbjct: 171 TMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839
+ LAS G D + +W DA P+ F H A + +W P
Sbjct: 228 -DGLQLASGGNDNVVQIW------------DARSSIPK--FTKTNHNAAVKAVAWCP 269
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 60/223 (26%)
Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADK 690
H + S + D+ + +WD + +H + H + V CL Y +YI+ TGS D
Sbjct: 172 HGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDN 227
Query: 691 TQFXXXXXXXXNYDQKLMIWD----------TRSHNVSKPSHT----------VDAHTAE 730
T L +W H+ HT + H A
Sbjct: 228 T---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 731 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 790
V +S + I+ +GS D T+ +WD+ +K L+ H D I+ + H S
Sbjct: 273 VRTVSGHGN---IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYD-HERKRCIS 327
Query: 791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833
+ D + +WDL E+G EL++ GHTA +
Sbjct: 328 ASMDTTIRIWDL------------ENG--ELMYTLQGHTALVG 356
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWD 801
IL +GS D+TV +WD++ H FE H + + + N + + D LHVW
Sbjct: 175 ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 802 LSK------IGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWVICSVSEDN 852
L K GEE P E + G GH A + S + N ++ S S DN
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN---IVVSGSYDN 290
Query: 853 IM 854
+
Sbjct: 291 TL 292
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 713 RSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES 770
R N + VD AH + ++ +P Y+L +GS D TV LW+ N +FE
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEG 138
Query: 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
H+ + V ++P + + AS DR + VW L +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 26/175 (14%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD + +W+ N T + H V C++FNP A+G D+T
Sbjct: 114 SGSDDLTVKLWNW--ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------- 164
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSE--YILATGSADKTVAL 755
+ +W S S P+ T+ VN + + P + Y++ T S D T+ +
Sbjct: 165 --------VKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKI 212
Query: 756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810
WD + K + + E H + + P I++ S D L +W+ S E++
Sbjct: 213 WDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKT 265
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 713 RSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES 770
R N + VD AH + ++ +P Y+L+ GS D TV LW+ N +FE
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEG 138
Query: 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
H+ + V ++P + + AS DR + VW L +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD + +W+ N T + H V C++FNP A+G D+T
Sbjct: 114 SGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------- 164
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEY-ILATGSADKTVALW 756
+ +W S S P+ T+ VN + + P + + T S D T+ +W
Sbjct: 165 --------VKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810
D + K + + E H + + P I++ S D L +W+ S E++
Sbjct: 214 DYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKT 265
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 673 LSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN 732
L++NP + + G D+++ IW T + S + H V
Sbjct: 22 LAWNPAGTLLASCGG----------------DRRIRIWGTEGDSWICKSVLSEGHQRTVR 65
Query: 733 CLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 791
++++P Y LA+ S D T +W + + + E H++E+ V W+P +LA+
Sbjct: 66 KVAWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATC 123
Query: 792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 851
D+ + VW++ D ED E + + HT + W+P++ ++ S S D
Sbjct: 124 SRDKSVWVWEV----------DEED-EYECVSVLNSHTQDVKHVVWHPSQE-LLASASYD 171
Query: 852 NIMQ 855
+ ++
Sbjct: 172 DTVK 175
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681
R + VAW L S + D IW + + T++ H EV +++ P S
Sbjct: 62 RTVRKVAWSPCGNYL-ASASFDATTCIWKKNQDDFECVT-TLEGHENEVKSVAWAP-SGN 118
Query: 682 ILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
+LAT S DK+ + +W+ + + +++HT +V + ++P S+
Sbjct: 119 LLATCSRDKS---------------VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQ 162
Query: 742 YILATGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
+LA+ S D TV L+ + + + + E H+ ++ + + P + LAS DR + +W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
Query: 801 DLSKIGEEQSTEDAEDGPPE--LLFIHGGHTAKISDFSW 837
G EQ + P + + G H+ I D +W
Sbjct: 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-----HTVDAHTAEVNCLSFN 676
R + D+AW L +L + DD + + + + +P+ H AH+ +VNC+++N
Sbjct: 253 RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312
Query: 677 PYSEYILATGSAD 689
P +LA+ S D
Sbjct: 313 PKEPGLLASCSDD 325
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 711 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 756
D + S +H AH+ +VNC+++NP +LA+ S D VA W
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 773
++N + +AH + ++ +P Y+L+ GS D TV LW+ N +FE H+
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ V ++P + + AS DR + VW L +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD + +W+ N T + H V C++FNP A+G D+T
Sbjct: 114 SGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------- 164
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEY-ILATGSADKTVALW 756
+ +W S S P+ T+ VN + + P + + T S D T+ +W
Sbjct: 165 --------VKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810
D + K + + E H + + P I++ S D L +W+ S E++
Sbjct: 214 DYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 773
++N + +AH + ++ +P Y+L+ GS D TV LW+ N +FE H+
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+ V ++P + + AS DR + VW L +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S +DD + +W+ N T + H V C++FNP A+G D+T
Sbjct: 114 SGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------- 164
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEY-ILATGSADKTVALW 756
+ +W S S P+ T+ VN + + P + + T S D T+ +W
Sbjct: 165 --------VKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810
D + K + + E H + + P I++ S D L +W+ S E++
Sbjct: 214 DYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKT 265
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 51/205 (24%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNP--YSEYILATGSADKT 691
++ S + D K++IW + S+ + H V H+A VN + + P Y +L S
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS---- 121
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS----------- 740
D K+ + + + + + P +DAH VN S+ P +
Sbjct: 122 ------------DGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 741 -EYILATGSADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGT 793
TG AD V +W D + L+ + E H D + V WSP + LAS
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227
Query: 794 DRRLHVWDLSKIGEEQSTEDAEDGP 818
DR +W T+D E GP
Sbjct: 228 DRTCIIW----------TQDNEQGP 242
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
E+G + +H H+A ++ W P+E P ++ + S+ + FK
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 860 K 860
+
Sbjct: 132 E 132
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 744 LATGSADKTVALWDLRN-LKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
LAT S+D++V ++D+RN ++ + H+ ++QV W+ P ILAS DR++ +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 841
E+G E H GH + ++ W P++
Sbjct: 87 -----------REENGTWEKSHEHAGHDSSVNSVCWAPHD 115
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 737 NPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHN-ETILASSGTD 794
+P ILA+ S D+ V +W N K H H + V W+PH+ ILA +D
Sbjct: 67 HPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839
+ + L+ GE G E+ I+ HT + SW P
Sbjct: 127 GAISL--LTYTGE---------GQWEVKKINNAHTIGCNAVSWAP 160
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 664 DAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPS 721
+AHT N +S+ P ++ S K + D + +W K
Sbjct: 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDGQWKEE 205
Query: 722 HTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALWDLRNLKLK------LHSFESHK 772
++AH+ V +++ P +A+ S D V +W + LH F
Sbjct: 206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF---N 262
Query: 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817
D ++ V WS ILA SG D ++ +W S G+ D G
Sbjct: 263 DVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQWVCISDVNKG 306
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764
H A+V FNP ++++AT S D TV LWDLRN+K K
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 239
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
H A+V FNP ++++AT S D T + +WD R+ K S+ +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDAT---------------VKLWDLRNIK-DKNSYIAE 245
Query: 726 A-HTAEVNCLSFNPYSEYILAT 746
H VN FNP L T
Sbjct: 246 MPHEKPVNAAYFNPTDSTKLLT 267
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764
H A+V FNP ++++AT S D TV LWDLRN+K K
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
H A+V FNP ++++AT S D T + +WD R+ K S+ +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDAT---------------VKLWDLRNIK-DKNSYIAE 246
Query: 726 A-HTAEVNCLSFNP 738
H VN FNP
Sbjct: 247 MPHEKPVNAAYFNP 260
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKT 691
+S+F S ++D ++++WDTR KP+ + L+++P + G + T
Sbjct: 182 DSVFLSCSEDNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 751
+ + DT+S + S H+ V L F+P+S LA+ S D
Sbjct: 239 ---------------VSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797
++A+ D +L +L ++H+D + WSP N ++L + G D ++
Sbjct: 281 SLAVLD-SSLS-ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 39/203 (19%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S + D + +WD V + AH A+V C++ +P+ + + + S D
Sbjct: 144 SGSKDICIKVWDLAQQVVLS---SYRAHAAQVTCVAASPHKDSVFLSCSEDN-------- 192
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKTVALW 756
++++WDTR KP+ + L+++P + G + TV+L
Sbjct: 193 -------RILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
D ++ L S H + + +SPH+ LAS D L V D S + E
Sbjct: 243 DTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSE--------- 291
Query: 817 GPPELLFIHGGHTAKISDFSWNP 839
LF H + D +W+P
Sbjct: 292 -----LFRSQAHRDFVRDATWSP 309
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
++ +E +T I L + V W H ++ S + D K+MIW + S+ +
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA 93
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
H V H+A VN + + P Y +L S D K+ + + + +
Sbjct: 94 VHAV--HSASVNSVQWAPHEYGPMLLVASS----------------DGKVSVVEFKENGT 135
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
+ P +DAH VN S+ P + TG AD V +W D +
Sbjct: 136 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
L+ + E H D + V WSP + +AS DR +W T+D E GP
Sbjct: 195 VLE-STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW----------TQDNEQGP 242
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
+AT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
E+G + +H H+A ++ W P+E P ++ + S+ + FK
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131
Query: 860 K 860
+
Sbjct: 132 E 132
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
++ +E +T I L + V W H ++ S + D K++IW + S+ +
Sbjct: 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
H V H+A VN + + P Y +L S D K+ + + + +
Sbjct: 96 VHAV--HSASVNSVQWAPHEYGPLLLVASS----------------DGKVSVVEFKENGT 137
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
+ P +DAH VN S+ P + TG AD V +W D +
Sbjct: 138 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
L+ + E H D + V WSP + LAS DR +W T+D E GP
Sbjct: 197 VLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW----------TQDNEQGP 244
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
E+G + +H H+A ++ W P+E P ++ + S+ + FK
Sbjct: 86 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Query: 860 K 860
+
Sbjct: 134 E 134
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 674 SFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC 733
SF+ +S+ ILATGS D+ YD +I +V + AH +
Sbjct: 19 SFD-FSQGILATGSTDR----KIKLVSVKYDDFTLI------DVLDET----AHKKAIRS 63
Query: 734 LSFNPYSEYILATGSADKTVALWDL-----RNLKLKLHS-FESHKDEIFQVQWSPHNETI 787
+++ P++ +LA GS D TV++W R ++ L + E H++E+ V WS ++
Sbjct: 64 VAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYY 121
Query: 788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847
LA+ D+ + +W+ + GEE E + + H+ + W+P+E + S
Sbjct: 122 LATCSRDKSVWIWETDESGEEY----------ECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 848 VSEDNI 853
+D +
Sbjct: 172 SYDDTV 177
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 36/198 (18%)
Query: 665 AHTAEVNCLSFNPYSEYILATGSADKTQ--FXXXXXXXXNYDQKLMIWDTRSHNVSKPSH 722
AH + +++ P++ +LA GS D T + ++ L+
Sbjct: 56 AHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLA------------- 101
Query: 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQ 779
++ H EV ++++ Y LAT S DK+V +W+ + + + H ++ V
Sbjct: 102 IIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160
Query: 780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI--SDFSW 837
W P +E +LASS D + +W +D +D E + + GH + SDF
Sbjct: 161 WHP-SEALLASSSYDDTVRIW-----------KDYDD-DWECVAVLNGHEGTVWSSDFD- 206
Query: 838 NPNEPWVICSVSEDNIMQ 855
+ +CS S+D+ ++
Sbjct: 207 KTEGVFRLCSGSDDSTVR 224
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 83/223 (37%), Gaps = 60/223 (26%)
Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADK 690
H + S + D+ + +WD + +H + H + V CL Y +YI+ TGS D
Sbjct: 172 HGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDN 227
Query: 691 TQFXXXXXXXXNYDQKLMIWD----------TRSHNVSKPSHT----------VDAHTAE 730
T L +W H+ HT + H A
Sbjct: 228 T---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 731 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 790
V +S + I+ +GS D T+ +WD+ K L+ H D I+ + H S
Sbjct: 273 VRTVSGHGN---IVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYD-HERKRCIS 327
Query: 791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833
+ D + +WDL E+G EL + GHTA +
Sbjct: 328 ASXDTTIRIWDL------------ENG--ELXYTLQGHTALVG 356
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWD 801
IL +GS D+TV +WD++ H FE H + + + N + + D LHVW
Sbjct: 175 ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 802 LSK------IGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWVICSVSEDN 852
L K GEE P E + G GH A + S + N ++ S S DN
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN---IVVSGSYDN 290
Query: 853 IM 854
+
Sbjct: 291 TL 292
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
++ +E +T I L + V W H ++ S + D K++IW + S+ +
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
H V H+A VN + + P Y +L S D K+ + + + +
Sbjct: 94 VHAV--HSASVNSVQWAPHEYGPLLLVASS----------------DGKVSVVEFKENGT 135
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
+ P +DAH VN S+ P + TG AD V +W D +
Sbjct: 136 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
L+ + E H D + V WSP + LAS DR +W T+D E GP
Sbjct: 195 VLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW----------TQDNEQGP 242
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
LAT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
E+G + +H H+A ++ W P+E P ++ + S+ + FK
Sbjct: 84 ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 860 K 860
+
Sbjct: 132 E 132
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSE 680
R +AWH H S + +M+W+ + KP+ + L FNP +
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNT 178
Query: 681 YILATGSADKTQ----FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTV------------ 724
S + T F + IW S +VS S V
Sbjct: 179 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILL 237
Query: 725 ----------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK 772
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+
Sbjct: 238 NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 297
Query: 773 DEIFQVQWSPHNETILAS 790
+ +SP +L +
Sbjct: 298 HPVNAACFSPDGARLLTT 315
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSE 680
R +AWH H S + +M+W+ + KP+ + L FNP +
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNT 177
Query: 681 YILATGSADKTQ----FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTV------------ 724
S + T F + IW S +VS S V
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILL 236
Query: 725 ----------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK 772
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+
Sbjct: 237 NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 773 DEIFQVQWSPHNETILAS 790
+ +SP +L +
Sbjct: 297 HPVNAACFSPDGARLLTT 314
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSE 680
R +AWH H S + +M+W+ + KP+ + L FNP +
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNT 177
Query: 681 YILATGSADKTQ----FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTV------------ 724
S + T F + IW S +VS S V
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILL 236
Query: 725 ----------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK 772
H +V ++ NP ++ LAT S D+TV +WDLR ++ K S H+
Sbjct: 237 NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 773 DEIFQVQWSPHNETILAS 790
+ +SP +L +
Sbjct: 297 HPVNAACFSPDGARLLTT 314
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D L +W+ ++ + + HT +V ++F+P + I+ +G D + +W+++
Sbjct: 86 SWDHSLRLWNLQN---GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGE 141
Query: 762 KLKLHSFESHKDEIFQVQWSPH-NETILASSGTDRRLHVWDLS 803
+ S +H D + V++SP + ++ S G D + VWDL+
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 58/242 (23%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
++ +E +T I L + V W H ++ S + D K+ IW + S+ +
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIA 93
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
H V H+A VN + + P Y +L S D K+ + + + +
Sbjct: 94 VHAV--HSASVNSVQWAPHEYGPXLLVASS----------------DGKVSVVEFKENGT 135
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
+ P +DAH VN S+ P + TG AD V +W D +
Sbjct: 136 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L+ + E H D + V WSP T+L AS DR +W T+D E
Sbjct: 195 VLE-STLEGHSDWVRDVAWSP---TVLLRSYXASVSQDRTCIIW----------TQDNEQ 240
Query: 817 GP 818
GP
Sbjct: 241 GP 242
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 745 ATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDL 802
AT S+DKT+ ++++ KL + H+ +++V W+ P TILAS D ++ +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK- 83
Query: 803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFKK 860
E+G + +H H+A ++ W P+E P ++ + S+ + FK+
Sbjct: 84 -----------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKE 132
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 25/160 (15%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
D + +WD + K ++DA + L+F+P S+Y LATG+
Sbjct: 101 DAHIRLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQY-LATGT--------------- 141
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762
+ K+ I+ S K +++D + ++++P +Y LA+G+ D + ++D+ K
Sbjct: 142 HVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGK 197
Query: 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
L LH+ E H I + +SP ++ +L ++ D + ++D+
Sbjct: 198 L-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDV 235
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 22/141 (15%)
Query: 661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKP 720
HT++ H + L+F+P S+ +L T S D + I+D + N++
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQ-LLVTASDDG---------------YIKIYDVQHANLAG- 242
Query: 721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780
T+ H + V ++F P + +++ S+DK+V +WD+ + +H+F H+D+++ V++
Sbjct: 243 --TLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDV-GTRTCVHTFFDHQDQVWGVKY 298
Query: 781 SPHNETILASSGTDRRLHVWD 801
+ + I+ S G D+ +H++D
Sbjct: 299 NGNGSKIV-SVGDDQEIHIYD 318
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 744 LATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
+ TGS D V +W R+ +L L S E H+ + V S H I ASS D + +WDL
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAHIRLWDL 109
Query: 803 SKIGEEQSTEDAEDGP 818
G++ + DA GP
Sbjct: 110 EN-GKQIKSIDA--GP 122
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH------NVSKPSHTVDAHTAE 669
Q + + +I +AW+ +F S IWD ++ + + P+ + +
Sbjct: 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQ 216
Query: 670 VNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD-AHT 728
++ + ++P + +AT + + D ++IWD R N + P T++ H
Sbjct: 217 LSVVEWHPKNSTRVATATG------------SDNDPSILIWDLR--NANTPLQTLNQGHQ 262
Query: 729 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 788
+ L + E++L + D TV LW+ + + +L F + + F+ +++P +
Sbjct: 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPDLF 321
Query: 789 ASSGTDRRLHVWDLSKIG---EEQSTE 812
A + D ++ V L + +EQ TE
Sbjct: 322 ACASFDNKIEVQTLQNLTNTLDEQETE 348
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHT-- 723
H++ V + FN + +LA+G + ++ IWD S ++T
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNG---------------EIFIWDMNKCTESPSNYTPL 156
Query: 724 ----VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQ- 777
+ EV L++N ++ A+ + ++WDL+ K +H S+ S I Q
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216
Query: 778 ---VQWSPHNETILAS---SGTDRRLHVWDL 802
V+W P N T +A+ S D + +WDL
Sbjct: 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDL 247
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810
F +H + V+++ + +LAS G + + +WD++K E S
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
+G D +V +WDL K L S+ +H E+ V P +TI S G D R+ +WD K
Sbjct: 156 SGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 41/174 (23%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKT 691
+++F S +D ++++WDTR KP+ +D ++ ++++P + A G D+T
Sbjct: 194 DTIFLSCGEDGRILLWDTRK---PKPATRIDFCASDTIPTSVTWHPEKDDTFACG--DET 248
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSA 749
+ L+ N+ P + T H+ + L+++ +S LA+ S
Sbjct: 249 G-----------NVSLV-------NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290
Query: 750 DKTVALWD------LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797
D TVA+ D R+L SH+D + V WSP + + + G D ++
Sbjct: 291 DCTVAVLDADFSEVFRDL--------SHRDFVTGVAWSPLDHSKFTTVGWDHKV 336
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
S D + +WD V K + +AH++EVNC++ P + I +
Sbjct: 156 SGGKDFSVKVWDLSQKAVLK---SYNAHSSEVNCVAACPGKDTIFLS------------- 199
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKTVALW 756
D ++++WDTR KP+ +D ++ ++++P + A G V+L
Sbjct: 200 --CGEDGRILLWDTRK---PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
+++N + H I + +S H+ LAS D + V D
Sbjct: 255 NIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 641 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXX 700
D K+ ++ +VS+ V H AE+ ++F+ +++AT D+++
Sbjct: 467 GQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVAT---DQSRKVIPYSVA 521
Query: 701 XNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760
N++ +H +++ HTA+V C+S++P LATGS D +V +W++
Sbjct: 522 NNFE--------LAH-----TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNK 567
Query: 761 ------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
+ H+ S + V W NET + S+G D + W++
Sbjct: 568 PSDHPIIIKGAHAMSS----VNSVIW--LNETTIVSAGQDSNIKFWNV 609
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 46/220 (20%)
Query: 645 KLMIWDTRSHNVSKPSH----TVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXX 700
+ IWDT ++ +H T+ + V +S++ S+ I A G + +F
Sbjct: 82 NVRIWDT-----TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-RERF------- 128
Query: 701 XNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760
+ ++DT + N + +N + F P + + +GS D TVA+++
Sbjct: 129 ----GHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW---DLSKIG--EEQSTEDAE 815
K K +F H + V+++P + ++ AS+G D + ++ D +K G E+ S ++
Sbjct: 180 FKFK-STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
H+ + +W+P+ I S S D ++
Sbjct: 238 ------------HSGSVFGLTWSPDGT-KIASASADKTIK 264
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764
AH+ V L+++P I A+ SADKT+ +W++ LK++
Sbjct: 237 AHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVE 274
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT +V LS P + + +G+ D + +WD R T
Sbjct: 194 HTGDVMSLSLAPDTR-LFVSGACDASA---------------KLWDVRE---GMCRQTFT 234
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 784
H +++N + F P ATGS D T L+DLR + +L +S ++ I V +S
Sbjct: 235 GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 293
Query: 785 ETILASSGTDRRLHVWDLSK 804
+LA D +VWD K
Sbjct: 294 RLLLAGY-DDFNCNVWDALK 312
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT +V LS P + + +G+ D + +WD R T
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASA---------------KLWDVRE---GMCRQTFT 223
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 784
H +++N + F P ATGS D T L+DLR + +L +S ++ I V +S
Sbjct: 224 GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 785 ETILASSGTDRRLHVWDLSK 804
+LA D +VWD K
Sbjct: 283 RLLLAGY-DDFNCNVWDALK 301
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT +V LS P + + +G+ D + +WD R T
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASA---------------KLWDVRE---GMCRQTFT 223
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 784
H +++N + F P ATGS D T L+DLR + +L +S ++ I V +S
Sbjct: 224 GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 785 ETILASSGTDRRLHVWDLSK 804
+LA D +VWD K
Sbjct: 283 RLLLAGY-DDFNCNVWDALK 301
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT +V LS P + + +G+ D + +WD R T
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASA---------------KLWDVRE---GMCRQTFT 223
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 784
H +++N + F P ATGS D T L+DLR + +L +S ++ I V +S
Sbjct: 224 GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 785 ETILASSGTDRRLHVWDLSK 804
+LA D +VWD K
Sbjct: 283 RLLLAGY-DDFNCNVWDALK 301
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
HT +V LS P + + +G+ D + +WD R T
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASA---------------KLWDVRE---GMCRQTFT 223
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 784
H +++N + F P ATGS D T L+DLR + +L +S ++ I V +S
Sbjct: 224 GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 785 ETILASSGTDRRLHVWDLSK 804
+LA D +VWD K
Sbjct: 283 RLLLAGY-DDFNCNVWDALK 301
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXX 696
F S D+K M+WD RS + T H ++VN + + P + A+GS D T
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFET---HESDVNSVRYYPSGD-AFASGSDDAT----C 264
Query: 697 XXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 756
D+++ I+ SK S A + + + S +L G D T+ +W
Sbjct: 265 RLYDLRADREVAIY-------SKESIIFGASSVDFS------LSGRLLFAGYNDYTINVW 311
Query: 757 D-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
D L+ ++ + H++ + ++ SP + T S D L VW
Sbjct: 312 DVLKGSRVSI--LFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 783
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
E I+ S G D L +W ++ + +++ D P
Sbjct: 172 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 783
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
E I+ S G D L +W ++ + +++ D P
Sbjct: 168 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 202
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 783
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
E I+ S G D L +W ++ + +++ D P
Sbjct: 173 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 207
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 783
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
E I+ S G D L +W ++ + +++ D P
Sbjct: 172 GEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++
Sbjct: 84 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ 139
Query: 762 KLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L + H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 140 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------ 191
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ------FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 786 TILASSGT 793
+ A++ T
Sbjct: 251 WLAAATAT 258
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 166 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 800 WDLS 803
W+L+
Sbjct: 223 WNLA 226
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++
Sbjct: 84 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ 139
Query: 762 KLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L + H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 140 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------ 191
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ------FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 786 TILASSGT 793
+ A++ T
Sbjct: 251 WLAAATAT 258
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +W+L
Sbjct: 169 IISAGN-DKMVKAWNLNQFQIEA-DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL 225
Query: 803 S 803
+
Sbjct: 226 A 226
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++
Sbjct: 84 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ 139
Query: 762 KLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L + H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 140 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------ 191
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ------FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 786 TILASSGT 793
+ A++ T
Sbjct: 251 WLAAATAT 258
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +W+L
Sbjct: 169 IISAGN-DKMVKAWNLNQFQIEA-DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL 225
Query: 803 S 803
+
Sbjct: 226 A 226
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++
Sbjct: 84 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ 139
Query: 762 KLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L + H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 140 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------ 191
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
FI GH + I+ + +P+ + + + IM
Sbjct: 192 ------FI--GHNSNINTLTASPDGTLIASAGKDGEIM 221
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 786 TILASSGT 793
+ A++ T
Sbjct: 251 WLAAATAT 258
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +W+L
Sbjct: 169 IISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL 225
Query: 803 S 803
+
Sbjct: 226 A 226
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
++D+ L +WD + + H ++V + + + I+ +GS DKT+ +W ++
Sbjct: 78 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ 133
Query: 762 KLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
L + H D + QV+ P+ + + S+G D+ + W+L++ E
Sbjct: 134 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------ 185
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
FI GH + I+ + +P+ + + + IM
Sbjct: 186 ------FI--GHNSNINTLTASPDGTLIASAGKDGEIM 215
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
H + +N L+ +P I + G D + LW+L K +++ S +DE+F + +SP+
Sbjct: 188 GHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA-AKKAMYTL-SAQDEVFSLAFSPNRY 244
Query: 786 TILASSGT 793
+ A++ T
Sbjct: 245 WLAAATAT 252
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
S I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +
Sbjct: 160 SVTIISAGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 216
Query: 800 WDLS 803
W+L+
Sbjct: 217 WNLA 220
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPH 783
H +N L F+P +L + S D + LW+++ L E H+DE+ +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 784 NETILASSGTDRRLHVWDLS 803
E I+ S G D L +W ++
Sbjct: 209 GEKIM-SCGMDHSLKLWRIN 227
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---------YSEYILATGSADKTVALW 756
K++++D +S V T+++N +S+ P E ++ATGS D + ++
Sbjct: 511 KILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
++ + + +HKD + + W + L SSG D + W++
Sbjct: 569 SVKRPXKIIKALNAHKDGVNNLLW--ETPSTLVSSGADACIKRWNV 612
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---------YSEYILATGSADKTVALW 756
K++++D +S V T+++N +S+ P E ++ATGS D + ++
Sbjct: 511 KILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
++ + + +HKD + + W + L SSG D + W++
Sbjct: 569 SVKRPMKIIKALNAHKDGVNNLLW--ETPSTLVSSGADACIKRWNV 612
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
N +++H + H ++ V W+P + I+ + GTDR +VW L P
Sbjct: 40 NKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTL----------KGRTWKP 88
Query: 820 ELLFIHGGHTAKISDFSWNPNE 841
L+ + A+ W PNE
Sbjct: 89 TLVILRINRAARC--VRWAPNE 108
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLK 762
D + +WD + + + HT +C+ + L TG D TV WDLR +
Sbjct: 162 DGNIAVWDLHNQTLVR---QFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQ 217
Query: 763 LKLHSFESHKDEIFQVQWSPHNE 785
L+ H F S +IF + + P E
Sbjct: 218 LQQHDFTS---QIFSLGYCPTGE 237
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
N +++H + H ++ + W+P + I+ + GTDR +VW L P
Sbjct: 40 NKWVQVHELKEHNGQVTGIDWAPDSNRIV-TCGTDRNAYVWTL----------KGRTWKP 88
Query: 820 ELLFIHGGHTAKISDFSWNPNE 841
L+ + A+ W PNE
Sbjct: 89 TLVILRINRAARC--VRWAPNE 108
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760
T+D HT + + + +++Y + TGSAD ++ LWD+ N
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCV-TGSADYSIKLWDVSN 105
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779
P +T+ H V LSF + ++ +GS DKT +W +L +++ ++H ++ +
Sbjct: 96 PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSL---VYNLQAHNASVWDAK 149
Query: 780 WSPHNETILASSGTDRRLHVWDLSKI 805
+E ++ D+ + +W K+
Sbjct: 150 VVSFSENKFLTASADKTIKLWQNDKV 175
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 64/181 (35%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
P +T+ H V LSF + ++ +GS DKT + + ++++ ++HN S
Sbjct: 96 PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKT--------AKVWKEGSLVYNLQAHNAS 144
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD---------------LRNLKL 763
DA +SE T SADKT+ LW +R+L +
Sbjct: 145 ----VWDAKVV--------SFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAV 192
Query: 764 ------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
L ++E H+ ++ ++ P+ + + S G DR + +
Sbjct: 193 VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV--SCGEDRTVRI 250
Query: 800 W 800
W
Sbjct: 251 W 251
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHN 784
H + +N L+ +P I + G D + LW NL K + S +DE+F + +SP+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK-DGEIXLW---NLAAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 785 ETILASSGT 793
+ A++ T
Sbjct: 250 YWLAAATAT 258
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
I++ G+ DK V W+L +++ F H I + SP + T++AS+G D + +W+L
Sbjct: 169 IISAGN-DKXVKAWNLNQFQIEA-DFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNL 225
Query: 803 S 803
+
Sbjct: 226 A 226
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED------GPPE 820
S ++HK ++QV+ P N + ++G LH+W + ++S +D+E G
Sbjct: 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY-EYPIQRSKKDSEGIEMGVAGSVS 312
Query: 821 LLFIHGGHTAKISDFSWNPNEPWV-ICS 847
LL T IS W+P++ + +CS
Sbjct: 313 LLQNVTLSTQPISSLDWSPDKRGLCVCS 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,559,347
Number of Sequences: 62578
Number of extensions: 969271
Number of successful extensions: 2963
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 2425
Number of HSP's gapped (non-prelim): 356
length of query: 860
length of database: 14,973,337
effective HSP length: 107
effective length of query: 753
effective length of database: 8,277,491
effective search space: 6232950723
effective search space used: 6232950723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)