Query psy4578
Match_columns 860
No_of_seqs 635 out of 3031
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:34:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.1E-28 3.6E-33 273.5 30.5 216 603-856 104-326 (344)
2 1vyh_C Platelet-activating fac 100.0 9.4E-28 3.2E-32 272.1 28.8 228 603-856 131-406 (410)
3 4gqb_B Methylosome protein 50; 100.0 7.2E-27 2.4E-31 258.8 28.1 203 618-856 79-284 (344)
4 1got_B GT-beta; complex (GTP-b 100.0 1.6E-26 5.4E-31 254.9 29.0 229 616-856 50-338 (340)
5 3ow8_A WD repeat-containing pr 100.0 1.6E-26 5.6E-31 253.1 28.5 216 600-856 100-316 (321)
6 4g56_B MGC81050 protein; prote 100.0 2E-26 6.9E-31 256.3 29.1 217 603-856 116-338 (357)
7 1vyh_C Platelet-activating fac 100.0 2.1E-26 7.1E-31 261.0 29.5 216 615-856 102-364 (410)
8 2ynn_A Coatomer subunit beta'; 100.0 2.9E-26 9.8E-31 248.7 29.2 217 602-856 35-254 (304)
9 3ow8_A WD repeat-containing pr 99.9 3E-26 1E-30 251.0 27.8 217 617-856 28-274 (321)
10 2xyi_A Probable histone-bindin 99.9 3.4E-26 1.1E-30 260.8 28.9 229 613-856 173-405 (430)
11 2ynn_A Coatomer subunit beta'; 99.9 2.8E-25 9.6E-30 240.9 29.2 222 601-859 76-301 (304)
12 2pm7_B Protein transport prote 99.9 3.7E-25 1.3E-29 239.1 29.5 215 614-856 46-280 (297)
13 3fm0_A Protein CIAO1; WDR39,SG 99.9 2E-25 6.9E-30 246.6 27.8 218 618-856 58-278 (345)
14 3fm0_A Protein CIAO1; WDR39,SG 99.9 8.2E-26 2.8E-30 249.8 24.6 207 617-856 11-220 (345)
15 4aow_A Guanine nucleotide-bind 99.9 2.3E-25 7.7E-30 243.0 27.7 225 617-856 34-332 (340)
16 1erj_A Transcriptional repress 99.9 4.5E-25 1.5E-29 248.4 29.6 209 623-856 125-384 (393)
17 1nr0_A Actin interacting prote 99.9 3.4E-25 1.2E-29 264.4 30.2 244 603-856 40-350 (611)
18 3iz6_a 40S ribosomal protein R 99.9 8.8E-26 3E-30 253.0 23.6 253 587-856 73-370 (380)
19 4gga_A P55CDC, cell division c 99.9 6.7E-25 2.3E-29 249.0 30.9 262 570-856 94-390 (420)
20 4g56_B MGC81050 protein; prote 99.9 4.3E-25 1.5E-29 245.5 28.3 220 602-856 70-296 (357)
21 2pbi_B Guanine nucleotide-bind 99.9 9E-25 3.1E-29 242.5 30.7 200 616-856 149-352 (354)
22 2pm7_B Protein transport prote 99.9 6.5E-25 2.2E-29 237.2 28.5 210 617-856 5-233 (297)
23 3frx_A Guanine nucleotide-bind 99.9 2.7E-25 9.3E-30 242.8 25.5 223 614-856 58-312 (319)
24 3frx_A Guanine nucleotide-bind 99.9 4.7E-25 1.6E-29 241.0 27.3 203 617-856 13-222 (319)
25 3iz6_a 40S ribosomal protein R 99.9 2.4E-25 8E-30 249.5 24.8 224 616-856 61-324 (380)
26 2xzm_R RACK1; ribosome, transl 99.9 1.4E-24 4.8E-29 239.4 28.3 224 616-856 71-335 (343)
27 4a11_B DNA excision repair pro 99.9 5.2E-24 1.8E-28 237.8 32.1 234 618-856 40-360 (408)
28 2pbi_B Guanine nucleotide-bind 99.9 2.5E-24 8.5E-29 239.0 29.2 217 616-856 59-310 (354)
29 3bg1_A Protein SEC13 homolog; 99.9 3.2E-25 1.1E-29 241.9 21.5 227 601-856 34-288 (316)
30 2hes_X YDR267CP; beta-propelle 99.9 1.4E-24 4.6E-29 238.5 25.9 210 620-856 57-275 (330)
31 4e54_B DNA damage-binding prot 99.9 2.5E-25 8.5E-30 253.9 20.5 205 620-856 118-322 (435)
32 4ery_A WD repeat-containing pr 99.9 4.9E-24 1.7E-28 231.0 29.0 227 604-856 47-307 (312)
33 2xzm_R RACK1; ribosome, transl 99.9 5E-24 1.7E-28 235.0 28.4 203 616-856 16-239 (343)
34 4ery_A WD repeat-containing pr 99.9 8.1E-24 2.8E-28 229.3 29.4 201 616-856 18-218 (312)
35 2ymu_A WD-40 repeat protein; u 99.9 4.1E-24 1.4E-28 251.6 29.0 224 603-856 326-575 (577)
36 2hes_X YDR267CP; beta-propelle 99.9 5.8E-24 2E-28 233.4 27.8 205 617-856 10-225 (330)
37 2xyi_A Probable histone-bindin 99.9 4.4E-24 1.5E-28 243.3 27.7 214 615-856 122-348 (430)
38 3dwl_C Actin-related protein 2 99.9 1.3E-24 4.3E-29 241.6 22.3 241 581-858 18-279 (377)
39 2j04_B YDR362CP, TAU91; beta p 99.9 2.9E-24 1E-28 250.9 24.8 220 601-856 182-423 (524)
40 3i2n_A WD repeat-containing pr 99.9 5.8E-24 2E-28 233.2 25.6 247 601-856 43-348 (357)
41 3f3f_A Nucleoporin SEH1; struc 99.9 6.4E-24 2.2E-28 230.4 25.6 220 618-856 8-332 (351)
42 2pm9_A Protein WEB1, protein t 99.9 3.2E-24 1.1E-28 241.0 23.3 221 603-856 90-332 (416)
43 4ggc_A P55CDC, cell division c 99.9 3.2E-23 1.1E-27 223.7 29.5 267 565-856 7-310 (318)
44 3bg1_A Protein SEC13 homolog; 99.9 2E-24 6.9E-29 235.6 20.0 207 618-856 10-242 (316)
45 2aq5_A Coronin-1A; WD40 repeat 99.9 2E-23 6.8E-28 235.0 28.5 209 615-856 75-294 (402)
46 3gre_A Serine/threonine-protei 99.9 3.8E-24 1.3E-28 243.2 20.1 240 607-856 48-354 (437)
47 3dwl_C Actin-related protein 2 99.9 6.6E-24 2.3E-28 235.8 21.4 215 620-856 10-231 (377)
48 3dm0_A Maltose-binding peripla 99.9 2E-23 6.9E-28 252.6 26.4 227 616-856 425-688 (694)
49 3vl1_A 26S proteasome regulato 99.9 2.6E-23 8.8E-28 234.4 25.3 215 603-856 79-317 (420)
50 3dm0_A Maltose-binding peripla 99.9 3.7E-23 1.3E-27 250.3 28.1 204 617-856 378-587 (694)
51 2pm9_A Protein WEB1, protein t 99.9 2.6E-23 9E-28 233.5 23.9 223 603-856 46-289 (416)
52 4e54_B DNA damage-binding prot 99.9 1.4E-23 4.7E-28 239.4 21.6 182 604-807 144-330 (435)
53 3zwl_B Eukaryotic translation 99.9 1.9E-22 6.6E-27 221.6 30.0 227 603-856 55-341 (369)
54 2ymu_A WD-40 repeat protein; u 99.9 1E-22 3.6E-27 239.5 29.1 224 603-856 285-534 (577)
55 2j04_B YDR362CP, TAU91; beta p 99.9 8.5E-24 2.9E-28 247.0 19.5 215 617-856 262-512 (524)
56 1r5m_A SIR4-interacting protei 99.9 2.2E-22 7.6E-27 225.5 30.1 209 620-856 107-356 (425)
57 3jrp_A Fusion protein of prote 99.9 8.2E-23 2.8E-27 225.7 25.8 213 614-856 48-282 (379)
58 1k8k_C P40, ARP2/3 complex 41 99.9 1E-22 3.5E-27 224.8 26.2 218 602-856 30-269 (372)
59 3ei3_B DNA damage-binding prot 99.9 1.9E-22 6.4E-27 225.0 28.0 228 603-856 97-377 (383)
60 1gxr_A ESG1, transducin-like e 99.9 5.1E-22 1.7E-26 215.6 30.4 214 602-856 72-291 (337)
61 3jrp_A Fusion protein of prote 99.9 1.1E-22 3.8E-27 224.6 25.5 209 616-856 6-235 (379)
62 1erj_A Transcriptional repress 99.9 1.3E-22 4.5E-27 228.2 26.5 204 617-856 60-282 (393)
63 1yfq_A Cell cycle arrest prote 99.9 4.1E-22 1.4E-26 217.5 29.1 225 602-853 33-315 (342)
64 3k26_A Polycomb protein EED; W 99.9 4E-23 1.4E-27 227.0 21.1 222 601-856 94-361 (366)
65 4h5i_A Guanine nucleotide-exch 99.9 8E-23 2.7E-27 227.9 23.8 195 622-856 134-338 (365)
66 3vl1_A 26S proteasome regulato 99.9 7.4E-23 2.5E-27 230.6 23.5 215 603-856 120-360 (420)
67 3ei3_B DNA damage-binding prot 99.9 1.8E-22 6.2E-27 225.1 26.4 204 618-856 70-277 (383)
68 1nr0_A Actin interacting prote 99.9 3.3E-22 1.1E-26 238.5 30.0 214 603-856 130-392 (611)
69 3odt_A Protein DOA1; ubiquitin 99.9 8.9E-22 3.1E-26 211.5 30.2 225 602-856 39-291 (313)
70 1sq9_A Antiviral protein SKI8; 99.9 2.3E-22 8E-27 224.5 26.1 216 603-856 92-390 (397)
71 3k26_A Polycomb protein EED; W 99.9 8.7E-23 3E-27 224.3 21.3 227 603-856 45-313 (366)
72 4aez_A CDC20, WD repeat-contai 99.9 7.4E-22 2.5E-26 222.3 28.5 214 602-856 113-331 (401)
73 1r5m_A SIR4-interacting protei 99.9 4.5E-22 1.5E-26 223.1 26.5 239 604-856 132-420 (425)
74 3mmy_A MRNA export factor; mRN 99.9 3.1E-22 1.1E-26 219.8 24.4 200 615-852 33-337 (368)
75 4aez_A CDC20, WD repeat-contai 99.9 5.1E-22 1.7E-26 223.7 26.3 214 603-856 157-375 (401)
76 4gq1_A NUP37; propeller, trans 99.9 1.1E-22 3.7E-27 229.1 20.4 208 615-857 130-386 (393)
77 1gxr_A ESG1, transducin-like e 99.9 1.7E-21 5.8E-26 211.4 29.0 210 603-856 120-332 (337)
78 1sq9_A Antiviral protein SKI8; 99.9 6.5E-22 2.2E-26 220.9 26.0 219 603-856 37-317 (397)
79 1k8k_C P40, ARP2/3 complex 41 99.9 9.1E-22 3.1E-26 217.2 25.5 231 604-856 76-356 (372)
80 3zwl_B Eukaryotic translation 99.9 1.5E-21 5.2E-26 214.4 25.7 203 614-856 25-244 (369)
81 3dw8_B Serine/threonine-protei 99.9 6.2E-22 2.1E-26 224.8 22.4 209 618-856 25-310 (447)
82 3mkq_A Coatomer beta'-subunit; 99.9 2.3E-21 7.8E-26 237.8 28.8 230 603-857 36-299 (814)
83 2aq5_A Coronin-1A; WD40 repeat 99.9 1.7E-21 5.7E-26 219.3 24.6 200 624-856 37-249 (402)
84 3dw8_B Serine/threonine-protei 99.9 1.2E-21 4.1E-26 222.4 23.3 199 622-856 94-368 (447)
85 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-21 5.5E-26 214.8 23.6 228 584-856 46-287 (343)
86 3odt_A Protein DOA1; ubiquitin 99.9 7.2E-21 2.5E-25 204.4 27.3 209 615-856 12-250 (313)
87 3jro_A Fusion protein of prote 99.9 1.4E-21 4.7E-26 238.9 24.2 213 614-856 46-280 (753)
88 1got_B GT-beta; complex (GTP-b 99.9 3E-21 1E-25 212.6 23.6 173 603-801 165-340 (340)
89 3v7d_B Cell division control p 99.9 2.3E-20 7.9E-25 213.6 30.3 210 604-856 144-376 (464)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.9 9.6E-21 3.3E-25 216.7 27.1 213 620-856 101-334 (450)
91 3jro_A Fusion protein of prote 99.9 3E-21 1E-25 235.9 23.8 208 617-856 5-233 (753)
92 3mkq_A Coatomer beta'-subunit; 99.9 5.4E-21 1.8E-25 234.5 24.3 201 617-856 9-212 (814)
93 3i2n_A WD repeat-containing pr 99.9 1.4E-20 4.9E-25 206.1 24.3 201 618-856 15-238 (357)
94 1pgu_A Actin interacting prote 99.9 2.2E-20 7.4E-25 220.7 27.6 219 603-856 40-278 (615)
95 3sfz_A APAF-1, apoptotic pepti 99.9 1.4E-20 4.9E-25 242.1 27.6 232 586-856 621-908 (1249)
96 3vu4_A KMHSV2; beta-propeller 99.9 5.6E-20 1.9E-24 203.9 28.4 223 622-856 59-331 (355)
97 3f3f_A Nucleoporin SEH1; struc 99.9 2.3E-20 8E-25 202.2 24.7 189 616-807 52-340 (351)
98 1yfq_A Cell cycle arrest prote 99.9 1.4E-20 4.9E-25 205.2 22.6 198 619-856 9-220 (342)
99 2j04_A TAU60, YPL007P, hypothe 99.9 1.2E-20 4E-25 216.9 22.2 192 619-856 83-292 (588)
100 2oaj_A Protein SNI1; WD40 repe 99.9 1.5E-20 5.1E-25 233.8 24.2 209 618-856 14-237 (902)
101 3sfz_A APAF-1, apoptotic pepti 99.9 3.4E-20 1.2E-24 238.6 28.1 214 617-856 611-866 (1249)
102 4h5i_A Guanine nucleotide-exch 99.9 1.6E-20 5.5E-25 209.3 20.7 209 579-805 132-344 (365)
103 3v7d_B Cell division control p 99.8 7E-20 2.4E-24 209.6 26.1 195 617-856 117-336 (464)
104 3gre_A Serine/threonine-protei 99.8 1.1E-20 3.8E-25 214.5 19.3 209 621-856 168-435 (437)
105 2w18_A PALB2, fancn, partner a 99.8 5.6E-20 1.9E-24 199.3 22.8 193 623-856 113-352 (356)
106 2oaj_A Protein SNI1; WD40 repe 99.8 5.1E-20 1.7E-24 229.0 25.7 224 603-851 40-297 (902)
107 1p22_A F-BOX/WD-repeat protein 99.8 1.3E-19 4.4E-24 206.3 26.9 205 604-856 155-360 (435)
108 3vu4_A KMHSV2; beta-propeller 99.8 9.7E-20 3.3E-24 202.0 24.6 211 616-856 14-266 (355)
109 4gga_A P55CDC, cell division c 99.8 2.9E-19 9.9E-24 202.5 28.1 196 624-856 108-305 (420)
110 1l0q_A Surface layer protein; 99.8 2.5E-19 8.6E-24 199.8 26.7 229 603-856 13-270 (391)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.8 4.4E-19 1.5E-23 202.2 29.2 222 603-853 180-430 (445)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.8 3.7E-19 1.3E-23 203.5 27.4 211 602-849 125-373 (450)
113 1pgu_A Actin interacting prote 99.8 1.3E-19 4.4E-24 214.1 24.3 201 619-856 16-233 (615)
114 3lrv_A PRE-mRNA-splicing facto 99.8 6.6E-20 2.3E-24 201.8 19.7 192 628-856 43-239 (343)
115 1p22_A F-BOX/WD-repeat protein 99.8 1.9E-19 6.7E-24 204.8 24.2 214 604-856 195-409 (435)
116 4a11_B DNA excision repair pro 99.8 2.8E-19 9.4E-24 199.4 24.9 188 601-808 121-369 (408)
117 2ovr_B FBW7, F-BOX/WD repeat p 99.8 1.4E-18 4.9E-23 198.0 30.9 218 603-856 140-386 (445)
118 2j04_A TAU60, YPL007P, hypothe 99.8 4.2E-19 1.5E-23 204.0 23.0 190 622-856 16-249 (588)
119 4gq1_A NUP37; propeller, trans 99.8 9.9E-20 3.4E-24 204.8 17.5 214 623-856 90-343 (393)
120 4ggc_A P55CDC, cell division c 99.8 2.5E-18 8.7E-23 185.1 27.0 196 624-856 28-225 (318)
121 3mmy_A MRNA export factor; mRN 99.8 4.2E-19 1.4E-23 194.7 18.1 193 603-804 65-346 (368)
122 3bws_A Protein LP49; two-domai 99.8 4.5E-18 1.5E-22 192.3 26.8 227 604-856 146-427 (433)
123 4aow_A Guanine nucleotide-bind 99.8 1.3E-17 4.6E-22 181.2 23.9 199 638-856 8-241 (340)
124 3bws_A Protein LP49; two-domai 99.8 6.1E-18 2.1E-22 191.3 21.3 204 615-856 116-329 (433)
125 2w18_A PALB2, fancn, partner a 99.8 7.1E-18 2.4E-22 182.8 18.2 174 614-802 171-355 (356)
126 2oit_A Nucleoporin 214KDA; NH2 99.8 6.6E-18 2.3E-22 192.8 19.0 205 622-853 37-264 (434)
127 1l0q_A Surface layer protein; 99.8 5.3E-17 1.8E-21 180.9 23.6 183 634-856 2-184 (391)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 2E-16 6.8E-21 179.4 28.6 211 602-852 159-376 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.7 4.7E-17 1.6E-21 185.7 19.1 211 620-856 91-328 (434)
130 2ojh_A Uncharacterized protein 99.7 7.1E-16 2.4E-20 163.0 23.2 215 599-850 19-237 (297)
131 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.1E-15 3.8E-20 173.2 24.1 214 600-852 91-333 (415)
132 2ojh_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 161.6 20.7 216 603-852 63-294 (297)
133 1ri6_A Putative isomerase YBHE 99.7 1.6E-15 5.6E-20 164.6 22.0 228 615-856 31-303 (343)
134 3hfq_A Uncharacterized protein 99.7 1.2E-14 4E-19 159.5 25.3 210 619-856 83-312 (347)
135 3vgz_A Uncharacterized protein 99.6 2.3E-14 7.7E-19 156.7 24.1 217 601-856 68-298 (353)
136 3hfq_A Uncharacterized protein 99.6 2.4E-14 8.1E-19 157.0 23.5 238 591-856 7-266 (347)
137 3u4y_A Uncharacterized protein 99.6 3.1E-14 1E-18 154.6 22.7 222 603-856 21-247 (331)
138 1nir_A Nitrite reductase; hemo 99.6 5.4E-14 1.8E-18 165.0 24.1 219 603-856 160-397 (543)
139 3u4y_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 147.7 24.1 195 627-856 3-202 (331)
140 3scy_A Hypothetical bacterial 99.6 6E-13 2E-17 146.8 26.9 238 591-856 18-286 (361)
141 3vgz_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 147.5 23.2 201 621-856 40-257 (353)
142 1nir_A Nitrite reductase; hemo 99.5 2.3E-13 7.9E-18 159.6 22.8 190 628-856 144-350 (543)
143 1xfd_A DIP, dipeptidyl aminope 99.5 1.3E-13 4.6E-18 166.7 19.6 212 603-852 38-329 (723)
144 2ecf_A Dipeptidyl peptidase IV 99.5 1.4E-13 4.7E-18 167.1 19.6 193 623-856 110-362 (741)
145 3scy_A Hypothetical bacterial 99.5 1.4E-12 4.8E-17 143.8 25.3 207 622-856 100-332 (361)
146 1ri6_A Putative isomerase YBHE 99.5 1.6E-13 5.3E-18 149.0 17.1 196 634-856 5-204 (343)
147 1pby_B Quinohemoprotein amine 99.5 1.2E-12 4E-17 141.6 21.3 217 604-856 13-305 (337)
148 2ecf_A Dipeptidyl peptidase IV 99.5 5.9E-13 2E-17 161.6 20.8 227 602-852 129-402 (741)
149 1xfd_A DIP, dipeptidyl aminope 99.5 1.9E-13 6.5E-18 165.3 16.0 202 622-848 17-273 (723)
150 2z3z_A Dipeptidyl aminopeptida 99.5 3.1E-13 1.1E-17 163.2 17.7 230 602-852 101-378 (706)
151 1jmx_B Amine dehydrogenase; ox 99.5 1.8E-12 6.3E-17 140.9 21.3 222 603-856 22-320 (349)
152 3o4h_A Acylamino-acid-releasin 99.5 3.5E-13 1.2E-17 159.1 16.3 205 607-856 49-271 (582)
153 1k32_A Tricorn protease; prote 99.4 2.1E-12 7.3E-17 163.3 21.9 183 622-849 296-491 (1045)
154 2z3z_A Dipeptidyl aminopeptida 99.4 3E-12 1E-16 154.5 20.6 196 624-851 183-422 (706)
155 1jof_A Carboxy-CIS,CIS-muconat 99.4 5.1E-12 1.7E-16 140.1 20.7 206 623-856 84-336 (365)
156 1z68_A Fibroblast activation p 99.4 8.1E-13 2.8E-17 159.9 12.1 217 603-855 37-338 (719)
157 3o4h_A Acylamino-acid-releasin 99.4 1.3E-11 4.6E-16 145.5 21.0 188 621-852 21-216 (582)
158 1pby_B Quinohemoprotein amine 99.4 1.8E-11 6.3E-16 132.1 19.6 147 635-808 2-167 (337)
159 1k32_A Tricorn protease; prote 99.3 1.2E-11 4.1E-16 156.4 20.2 184 621-850 244-441 (1045)
160 1z68_A Fibroblast activation p 99.3 5.2E-12 1.8E-16 152.9 14.4 199 625-849 19-271 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.3 5.2E-11 1.8E-15 131.9 20.9 216 622-851 40-276 (365)
162 1jmx_B Amine dehydrogenase; ox 99.3 5.9E-11 2E-15 129.0 19.4 156 626-809 4-180 (349)
163 4a5s_A Dipeptidyl peptidase 4 99.2 1.9E-10 6.4E-15 140.0 21.4 161 622-802 17-200 (740)
164 3pe7_A Oligogalacturonate lyas 99.2 4.2E-10 1.4E-14 124.6 20.0 204 606-851 15-259 (388)
165 3fvz_A Peptidyl-glycine alpha- 99.2 1.4E-09 4.7E-14 118.7 23.6 215 604-856 71-317 (329)
166 4a5s_A Dipeptidyl peptidase 4 99.2 4E-10 1.4E-14 137.1 20.7 219 603-856 37-346 (740)
167 3pe7_A Oligogalacturonate lyas 99.2 3.7E-10 1.3E-14 125.1 17.7 223 604-856 62-377 (388)
168 1q7f_A NHL, brain tumor CG1071 99.2 5.6E-09 1.9E-13 110.7 26.0 192 622-858 77-278 (286)
169 3azo_A Aminopeptidase; POP fam 99.2 6.1E-10 2.1E-14 133.2 19.9 200 616-854 18-265 (662)
170 3azo_A Aminopeptidase; POP fam 99.1 1.1E-09 3.7E-14 131.0 20.9 225 612-856 58-318 (662)
171 3e5z_A Putative gluconolactona 99.1 2.8E-09 9.6E-14 113.9 21.3 227 604-859 52-285 (296)
172 1xip_A Nucleoporin NUP159; bet 99.1 1.7E-09 5.9E-14 120.2 19.0 185 623-849 39-233 (388)
173 1q7f_A NHL, brain tumor CG1071 99.1 1.3E-08 4.5E-13 107.8 25.2 193 619-856 27-233 (286)
174 1rwi_B Serine/threonine-protei 99.1 1E-08 3.5E-13 107.3 24.1 193 621-856 66-259 (270)
175 2dg1_A DRP35, lactonase; beta 99.1 1.8E-08 6E-13 109.3 24.4 207 620-854 43-256 (333)
176 3fvz_A Peptidyl-glycine alpha- 99.1 1.3E-08 4.5E-13 110.8 23.1 183 620-839 22-250 (329)
177 2gop_A Trilobed protease; beta 99.1 4.4E-09 1.5E-13 114.5 19.3 214 601-856 42-287 (347)
178 2dg1_A DRP35, lactonase; beta 99.0 2.9E-08 1E-12 107.5 24.8 220 604-851 68-301 (333)
179 3e5z_A Putative gluconolactona 99.0 9.6E-09 3.3E-13 109.7 19.9 198 620-856 26-242 (296)
180 2xdw_A Prolyl endopeptidase; a 99.0 3.5E-08 1.2E-12 119.2 25.5 218 603-850 152-400 (710)
181 2xdw_A Prolyl endopeptidase; a 99.0 1.2E-08 4.1E-13 123.4 20.1 215 622-856 125-361 (710)
182 2oiz_A Aromatic amine dehydrog 99.0 3.7E-08 1.2E-12 109.0 21.9 210 604-856 33-329 (361)
183 2oiz_A Aromatic amine dehydrog 98.9 5.8E-08 2E-12 107.4 22.5 197 622-842 108-360 (361)
184 3c5m_A Oligogalacturonate lyas 98.9 3.8E-09 1.3E-13 116.9 12.2 185 624-850 38-258 (396)
185 3g4e_A Regucalcin; six bladed 98.9 1.1E-07 3.7E-12 101.9 23.3 205 619-852 51-264 (297)
186 1qks_A Cytochrome CD1 nitrite 98.9 1.6E-07 5.3E-12 110.2 26.4 180 604-807 179-376 (567)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 1.2E-07 4.2E-12 101.3 23.3 214 620-857 69-296 (314)
188 3c5m_A Oligogalacturonate lyas 98.9 6.4E-09 2.2E-13 115.0 13.0 209 604-847 62-300 (396)
189 2gop_A Trilobed protease; beta 98.9 4E-08 1.4E-12 106.9 19.1 201 603-853 86-322 (347)
190 1rwi_B Serine/threonine-protei 98.9 1E-07 3.4E-12 99.7 21.3 190 623-855 25-216 (270)
191 2bkl_A Prolyl endopeptidase; m 98.9 8.5E-08 2.9E-12 115.6 22.3 211 622-856 121-344 (695)
192 1qks_A Cytochrome CD1 nitrite 98.8 3.3E-07 1.1E-11 107.5 25.1 186 633-856 166-368 (567)
193 3dsm_A Uncharacterized protein 98.8 1.5E-07 5E-12 102.6 20.1 211 604-856 66-297 (328)
194 2z2n_A Virginiamycin B lyase; 98.8 1.3E-06 4.6E-11 92.1 26.1 196 621-858 98-293 (299)
195 1xip_A Nucleoporin NUP159; bet 98.8 1.6E-07 5.5E-12 104.3 18.9 135 619-789 86-230 (388)
196 2z2n_A Virginiamycin B lyase; 98.7 2.4E-06 8.2E-11 90.1 25.6 193 621-854 14-206 (299)
197 3hrp_A Uncharacterized protein 98.7 1.2E-06 4E-11 98.7 24.2 227 604-855 154-404 (409)
198 2bkl_A Prolyl endopeptidase; m 98.7 5.5E-07 1.9E-11 108.5 22.6 213 602-850 147-383 (695)
199 2ghs_A AGR_C_1268P; regucalcin 98.7 1.9E-06 6.7E-11 93.5 24.2 196 621-852 89-294 (326)
200 3no2_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 96.5 17.0 174 634-853 5-187 (276)
201 3dsm_A Uncharacterized protein 98.7 1.9E-06 6.4E-11 93.8 22.5 183 623-849 45-244 (328)
202 3g4e_A Regucalcin; six bladed 98.6 1.9E-06 6.6E-11 92.1 22.0 197 624-856 15-225 (297)
203 3no2_A Uncharacterized protein 98.6 1.9E-06 6.6E-11 91.4 21.4 202 602-843 15-226 (276)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 9.9E-07 3.4E-11 94.2 18.8 203 621-857 17-253 (314)
205 1yr2_A Prolyl oligopeptidase; 98.6 1.1E-06 3.6E-11 106.8 21.2 211 622-856 163-388 (741)
206 2qc5_A Streptogramin B lactona 98.6 7.4E-06 2.5E-10 86.3 24.5 195 621-856 19-214 (300)
207 2ghs_A AGR_C_1268P; regucalcin 98.6 4.6E-06 1.6E-10 90.5 23.2 193 625-856 52-256 (326)
208 3hrp_A Uncharacterized protein 98.6 2.6E-06 8.8E-11 95.9 21.7 209 621-856 130-349 (409)
209 3iuj_A Prolyl endopeptidase; h 98.6 9.1E-07 3.1E-11 106.6 18.5 211 621-855 128-351 (693)
210 1yr2_A Prolyl oligopeptidase; 98.6 4.5E-06 1.5E-10 101.3 24.5 219 602-850 189-427 (741)
211 2qc5_A Streptogramin B lactona 98.6 1.2E-05 4.3E-10 84.5 25.0 194 622-856 62-256 (300)
212 3iuj_A Prolyl endopeptidase; h 98.5 5.5E-06 1.9E-10 99.7 23.2 217 601-850 154-391 (693)
213 2mad_H Methylamine dehydrogena 98.4 2.3E-05 7.9E-10 86.9 24.3 62 626-691 70-149 (373)
214 3dr2_A Exported gluconolactona 98.4 4.1E-06 1.4E-10 89.8 17.6 211 619-857 83-303 (305)
215 3dr2_A Exported gluconolactona 98.3 9.2E-06 3.1E-10 87.0 17.1 196 620-856 43-263 (305)
216 1npe_A Nidogen, entactin; glyc 98.3 0.00027 9.2E-09 73.8 27.4 161 622-804 36-198 (267)
217 2qe8_A Uncharacterized protein 98.3 1.3E-05 4.3E-10 87.7 17.3 196 620-853 65-313 (343)
218 2ece_A 462AA long hypothetical 98.2 2.9E-05 9.8E-10 86.8 17.3 201 624-848 140-399 (462)
219 1npe_A Nidogen, entactin; glyc 98.2 0.00035 1.2E-08 72.9 25.0 186 636-855 3-192 (267)
220 2qe8_A Uncharacterized protein 98.2 3.6E-05 1.2E-09 84.0 17.4 211 622-855 17-272 (343)
221 2ece_A 462AA long hypothetical 98.1 3.7E-05 1.3E-09 85.9 15.6 209 631-856 93-347 (462)
222 2iwa_A Glutamine cyclotransfer 98.1 0.00021 7.2E-09 74.9 20.2 202 624-855 23-231 (266)
223 1mda_H Methylamine dehydrogena 98.1 2.5E-05 8.5E-10 86.3 13.3 222 607-856 51-341 (368)
224 3c75_H MADH, methylamine dehyd 98.0 0.0001 3.4E-09 82.9 17.5 218 604-856 101-397 (426)
225 3v64_C Agrin; beta propeller, 98.0 0.002 6.9E-08 70.4 26.8 164 619-804 70-234 (349)
226 3v65_B Low-density lipoprotein 98.0 0.0012 4.1E-08 73.3 25.2 166 617-804 111-277 (386)
227 2hz6_A Endoplasmic reticulum t 97.9 1.5E-05 5.3E-10 88.1 9.0 158 633-808 8-196 (369)
228 3nol_A Glutamine cyclotransfer 97.9 0.00048 1.6E-08 71.6 19.1 193 624-849 45-244 (262)
229 1ijq_A LDL receptor, low-densi 97.9 0.0038 1.3E-07 67.1 27.0 167 619-804 27-195 (316)
230 3sjl_D Methylamine dehydrogena 97.9 0.00014 4.7E-09 80.5 15.6 233 604-856 61-358 (386)
231 2mad_H Methylamine dehydrogena 97.9 0.0011 3.9E-08 73.1 22.7 154 633-807 31-198 (373)
232 3nok_A Glutaminyl cyclase; bet 97.8 0.00062 2.1E-08 70.7 18.4 193 624-849 57-254 (268)
233 3mbr_X Glutamine cyclotransfer 97.8 0.0014 4.7E-08 67.5 19.2 194 624-849 23-223 (243)
234 3sjl_D Methylamine dehydrogena 97.8 0.00056 1.9E-08 75.6 17.5 159 626-804 37-208 (386)
235 1fwx_A Nitrous oxide reductase 97.7 6E-05 2.1E-09 87.0 8.9 216 622-850 134-408 (595)
236 3p5b_L Low density lipoprotein 97.7 0.01 3.6E-07 66.0 27.1 169 617-804 107-277 (400)
237 3hxj_A Pyrrolo-quinoline quino 97.7 0.0014 4.9E-08 69.8 19.2 136 634-802 107-242 (330)
238 1fwx_A Nitrous oxide reductase 97.7 0.00071 2.4E-08 78.1 17.4 207 634-855 102-355 (595)
239 3sov_A LRP-6, low-density lipo 97.7 0.018 6.1E-07 61.9 27.4 165 619-804 32-197 (318)
240 1ijq_A LDL receptor, low-densi 97.6 0.014 4.9E-07 62.5 25.9 178 644-855 10-189 (316)
241 2xe4_A Oligopeptidase B; hydro 97.6 0.0037 1.3E-07 75.7 23.1 201 623-856 175-393 (751)
242 3hxj_A Pyrrolo-quinoline quino 97.6 0.0014 4.6E-08 70.0 17.3 182 623-856 138-319 (330)
243 3c75_H MADH, methylamine dehyd 97.6 0.00089 3E-08 75.1 15.9 153 633-804 83-248 (426)
244 3v65_B Low-density lipoprotein 97.6 0.0086 2.9E-07 66.3 23.8 176 643-855 95-271 (386)
245 3v64_C Agrin; beta propeller, 97.6 0.015 5.2E-07 63.3 25.5 176 643-855 52-228 (349)
246 2fp8_A Strictosidine synthase; 97.5 0.003 1E-07 67.8 18.2 190 622-848 19-246 (322)
247 3m0c_C LDL receptor, low-densi 97.4 0.017 5.8E-07 70.0 25.9 169 617-804 419-589 (791)
248 3qqz_A Putative uncharacterize 97.4 0.029 9.9E-07 58.2 24.1 196 622-852 27-244 (255)
249 2iwa_A Glutamine cyclotransfer 97.4 0.0024 8.3E-08 66.8 14.8 151 626-805 70-238 (266)
250 3p5b_L Low density lipoprotein 97.3 0.053 1.8E-06 60.2 26.1 185 636-855 85-271 (400)
251 2p4o_A Hypothetical protein; p 97.2 0.018 6.3E-07 61.1 20.8 156 623-804 33-198 (306)
252 3nol_A Glutamine cyclotransfer 97.2 0.0048 1.6E-07 64.0 14.8 162 603-792 66-244 (262)
253 1mda_H Methylamine dehydrogena 97.2 0.0012 4.1E-08 72.7 10.8 76 734-811 269-353 (368)
254 3tc9_A Hypothetical hydrolase; 97.1 0.011 3.9E-07 66.4 18.4 163 621-803 136-300 (430)
255 1yiq_A Quinohemoprotein alcoho 97.1 0.01 3.6E-07 71.0 19.0 58 750-810 454-511 (689)
256 4hw6_A Hypothetical protein, I 97.1 0.035 1.2E-06 62.4 22.1 163 622-804 139-304 (433)
257 1kb0_A Quinohemoprotein alcoho 97.1 0.009 3.1E-07 71.4 17.6 58 751-811 457-514 (677)
258 1n7d_A LDL receptor, low-densi 97.1 0.0023 7.8E-08 76.8 12.3 169 617-804 401-571 (699)
259 3sov_A LRP-6, low-density lipo 97.0 0.067 2.3E-06 57.4 22.1 179 643-855 12-191 (318)
260 3mbr_X Glutamine cyclotransfer 97.0 0.014 4.9E-07 59.9 15.8 161 604-792 45-223 (243)
261 2fp8_A Strictosidine synthase; 97.0 0.026 8.8E-07 60.3 18.8 174 622-803 80-268 (322)
262 2p4o_A Hypothetical protein; p 96.9 0.056 1.9E-06 57.3 20.9 194 621-850 71-278 (306)
263 2p9w_A MAL S 1 allergenic prot 96.9 0.081 2.8E-06 56.6 21.1 170 624-804 15-215 (334)
264 3m0c_C LDL receptor, low-densi 96.8 0.14 4.8E-06 61.9 25.5 180 642-855 402-583 (791)
265 3nok_A Glutaminyl cyclase; bet 96.8 0.016 5.4E-07 60.2 14.8 160 604-792 77-254 (268)
266 4a2l_A BT_4663, two-component 96.8 0.21 7.1E-06 60.6 26.5 199 621-856 214-432 (795)
267 4a2l_A BT_4663, two-component 96.7 0.24 8.1E-06 60.0 26.8 196 622-857 310-523 (795)
268 4a0p_A LRP6, LRP-6, low-densit 96.7 0.43 1.5E-05 56.2 27.9 161 621-804 36-197 (628)
269 2xe4_A Oligopeptidase B; hydro 96.7 0.11 3.8E-06 62.7 23.2 158 624-801 223-395 (751)
270 3tc9_A Hypothetical hydrolase; 96.7 0.044 1.5E-06 61.5 18.0 154 669-856 138-296 (430)
271 3s94_A LRP-6, low-density lipo 96.6 0.22 7.6E-06 58.5 24.2 168 616-804 34-202 (619)
272 2hz6_A Endoplasmic reticulum t 96.6 0.0004 1.4E-08 76.6 0.5 107 679-810 9-117 (369)
273 3sre_A PON1, serum paraoxonase 96.5 0.12 4.3E-06 56.1 19.8 176 642-849 81-285 (355)
274 3v9f_A Two-component system se 96.5 0.16 5.4E-06 61.5 22.9 199 622-857 313-521 (781)
275 3kya_A Putative phosphatase; s 96.4 0.044 1.5E-06 62.3 15.8 171 622-803 139-340 (496)
276 1n7d_A LDL receptor, low-densi 96.4 0.013 4.6E-07 70.1 12.1 179 643-855 385-565 (699)
277 1k3i_A Galactose oxidase precu 96.3 0.1 3.6E-06 61.8 19.6 119 626-763 190-326 (656)
278 1kb0_A Quinohemoprotein alcoho 96.3 0.059 2E-06 64.2 17.1 87 671-763 246-349 (677)
279 4a0p_A LRP6, LRP-6, low-densit 96.3 0.64 2.2E-05 54.7 25.6 178 642-855 13-191 (628)
280 3v9f_A Two-component system se 96.2 0.26 8.9E-06 59.6 22.3 193 622-856 363-564 (781)
281 1yiq_A Quinohemoprotein alcoho 96.2 0.061 2.1E-06 64.3 16.3 88 672-763 239-341 (689)
282 3s94_A LRP-6, low-density lipo 96.1 1.1 3.9E-05 52.4 26.6 162 621-804 348-510 (619)
283 3qqz_A Putative uncharacterize 96.1 0.77 2.6E-05 47.4 22.1 164 619-802 67-251 (255)
284 3amr_A 3-phytase; beta-propell 96.1 0.64 2.2E-05 50.1 22.0 193 633-856 39-258 (355)
285 3kya_A Putative phosphatase; s 95.9 0.066 2.3E-06 60.9 13.9 167 669-856 140-336 (496)
286 2xbg_A YCF48-like protein; pho 95.8 0.61 2.1E-05 49.9 20.9 190 622-854 122-315 (327)
287 2xbg_A YCF48-like protein; pho 95.7 1.2 4.1E-05 47.4 22.8 192 622-854 80-272 (327)
288 4hw6_A Hypothetical protein, I 95.6 0.62 2.1E-05 52.1 20.7 222 611-856 171-428 (433)
289 3pbp_A Nucleoporin NUP82; beta 95.6 0.91 3.1E-05 50.1 21.0 154 633-800 31-208 (452)
290 3q7m_A Lipoprotein YFGL, BAMB; 95.6 0.17 5.9E-06 54.9 15.4 144 634-808 188-341 (376)
291 1kv9_A Type II quinohemoprotei 95.5 0.25 8.5E-06 58.7 17.6 59 750-811 437-495 (668)
292 2p9w_A MAL S 1 allergenic prot 95.2 0.38 1.3E-05 51.5 16.0 164 666-857 11-212 (334)
293 3q7m_A Lipoprotein YFGL, BAMB; 94.8 0.25 8.6E-06 53.5 14.0 136 634-801 239-375 (376)
294 2ad6_A Methanol dehydrogenase 94.7 0.53 1.8E-05 54.7 16.9 59 749-810 442-500 (571)
295 1flg_A Protein (quinoprotein e 93.9 2.2 7.6E-05 49.5 20.1 59 750-811 465-523 (582)
296 3pbp_A Nucleoporin NUP82; beta 93.8 4.1 0.00014 44.9 20.3 140 707-855 43-206 (452)
297 2vpj_A Kelch-like protein 12; 93.5 3 0.0001 43.3 18.6 154 633-806 62-233 (301)
298 1kv9_A Type II quinohemoprotei 93.4 0.53 1.8E-05 55.8 13.8 88 672-763 234-336 (668)
299 1bpo_A Protein (clathrin); cla 93.2 12 0.00042 41.3 23.6 188 603-809 87-294 (494)
300 2xzh_A Clathrin heavy chain 1; 93.2 10 0.00035 40.4 22.6 188 603-809 88-295 (365)
301 2ism_A Putative oxidoreductase 93.2 5.9 0.0002 42.5 20.7 215 621-852 74-337 (352)
302 3sre_A PON1, serum paraoxonase 92.8 2.5 8.4E-05 45.8 16.7 135 703-855 81-246 (355)
303 3a9g_A Putative uncharacterize 92.6 10 0.00034 40.8 21.4 220 622-859 73-351 (354)
304 3a9g_A Putative uncharacterize 92.4 5.1 0.00017 43.2 18.8 61 622-687 29-95 (354)
305 1k3i_A Galactose oxidase precu 92.2 1.1 3.7E-05 52.9 14.1 127 672-806 190-325 (656)
306 1w6s_A Methanol dehydrogenase 91.8 4.4 0.00015 47.2 18.4 60 749-811 451-510 (599)
307 3amr_A 3-phytase; beta-propell 91.7 6.3 0.00022 42.4 17.9 178 604-803 52-262 (355)
308 1tl2_A L10, protein (tachylect 91.6 5.5 0.00019 39.9 16.0 142 634-801 4-160 (236)
309 3das_A Putative oxidoreductase 91.5 17 0.00059 39.0 22.8 63 622-686 32-101 (347)
310 2ad6_A Methanol dehydrogenase 90.9 1.3 4.6E-05 51.3 12.8 84 703-792 442-526 (571)
311 2g8s_A Glucose/sorbosone dehyd 90.5 9.8 0.00034 40.8 18.5 65 621-688 17-89 (353)
312 1xi4_A Clathrin heavy chain; a 90.4 11 0.00037 47.9 20.3 226 603-853 87-334 (1630)
313 2ism_A Putative oxidoreductase 90.3 3 0.0001 44.9 14.2 104 668-792 31-153 (352)
314 3ott_A Two-component system se 89.3 31 0.0011 40.9 23.5 186 622-857 63-257 (758)
315 1zgk_A Kelch-like ECH-associat 89.3 5.6 0.00019 41.5 15.1 152 633-805 70-241 (308)
316 1cru_A Protein (soluble quinop 89.2 10 0.00035 42.3 17.9 64 622-687 27-99 (454)
317 2xn4_A Kelch-like protein 2; s 88.8 5.5 0.00019 41.3 14.5 152 633-805 61-230 (302)
318 2vpj_A Kelch-like protein 12; 88.5 6.2 0.00021 40.8 14.6 151 633-804 112-278 (301)
319 3ii7_A Kelch-like protein 7; p 88.1 7.5 0.00026 40.3 15.0 153 633-805 55-226 (306)
320 2xzh_A Clathrin heavy chain 1; 88.1 26 0.00088 37.3 18.4 141 634-804 36-189 (365)
321 3ei3_A DNA damage-binding prot 87.3 17 0.00058 45.8 19.7 155 622-804 829-999 (1158)
322 1flg_A Protein (quinoprotein e 87.2 6.6 0.00023 45.5 15.1 84 703-792 464-548 (582)
323 2g8s_A Glucose/sorbosone dehyd 86.7 35 0.0012 36.4 19.7 74 773-858 271-352 (353)
324 1cru_A Protein (soluble quinop 86.6 28 0.00095 38.8 19.3 108 668-793 27-163 (454)
325 2xn4_A Kelch-like protein 2; s 85.7 7.8 0.00027 40.1 13.4 154 633-805 108-277 (302)
326 1zgk_A Kelch-like ECH-associat 85.1 8.2 0.00028 40.2 13.3 151 633-804 121-287 (308)
327 3s25_A Hypothetical 7-bladed b 84.5 18 0.00061 37.9 15.5 127 644-804 88-216 (302)
328 1tl2_A L10, protein (tachylect 83.9 14 0.00048 37.0 13.2 150 622-798 41-204 (236)
329 3ii7_A Kelch-like protein 7; p 83.8 9.8 0.00033 39.4 13.1 156 633-805 101-273 (306)
330 3s25_A Hypothetical 7-bladed b 83.6 16 0.00054 38.3 14.6 114 673-805 58-177 (302)
331 3ott_A Two-component system se 83.5 72 0.0025 37.7 22.3 191 623-855 104-302 (758)
332 4asc_A Kelch repeat and BTB do 83.5 13 0.00046 38.6 14.2 153 633-805 98-278 (315)
333 1w6s_A Methanol dehydrogenase 83.2 9 0.00031 44.5 13.5 84 703-792 451-535 (599)
334 3das_A Putative oxidoreductase 79.4 70 0.0024 34.1 23.8 220 621-858 79-346 (347)
335 3nmd_A CGMP dependent protein 76.5 1.6 5.3E-05 35.1 2.7 43 103-149 21-63 (72)
336 2zwa_A Leucine carboxyl methyl 75.7 20 0.00068 42.4 13.6 159 633-806 397-579 (695)
337 4asc_A Kelch repeat and BTB do 75.1 37 0.0013 35.1 14.2 95 704-805 116-222 (315)
338 2woz_A Kelch repeat and BTB do 71.7 18 0.00061 37.7 10.7 114 633-763 109-234 (318)
339 2woz_A Kelch repeat and BTB do 70.2 41 0.0014 34.7 13.2 155 633-806 56-233 (318)
340 3ei3_A DNA damage-binding prot 69.9 91 0.0031 39.1 18.1 155 619-801 883-1059(1158)
341 2uvk_A YJHT; unknown function, 66.0 25 0.00084 37.2 10.5 53 752-807 286-345 (357)
342 2zwa_A Leucine carboxyl methyl 64.7 29 0.00099 40.9 11.6 120 633-763 500-638 (695)
343 2uvk_A YJHT; unknown function, 62.5 61 0.0021 34.0 12.8 22 633-654 65-96 (357)
344 2wg3_C Hedgehog-interacting pr 60.6 58 0.002 36.3 12.5 115 730-852 15-160 (463)
345 3sbq_A Nitrous-oxide reductase 60.0 23 0.0008 40.3 8.8 75 729-804 323-408 (638)
346 1bpo_A Protein (clathrin); cla 59.8 2.1E+02 0.0072 31.6 21.3 203 583-806 108-333 (494)
347 1xi4_A Clathrin heavy chain; a 58.4 1.9E+02 0.0063 37.1 17.1 202 583-805 108-332 (1630)
348 4hvt_A Ritya.17583.B, post-pro 52.8 3.4E+02 0.012 31.8 18.8 213 624-855 131-373 (711)
349 2wg3_C Hedgehog-interacting pr 49.6 1.4E+02 0.0047 33.2 13.2 67 621-687 13-91 (463)
350 3a7o_A Autophagy protein 16; c 48.1 6.7 0.00023 30.9 1.4 36 99-134 30-72 (75)
351 3b7f_A Glycosyl hydrolase, BNR 45.8 2.9E+02 0.01 29.1 16.0 64 729-795 177-254 (394)
352 4gq2_M Nucleoporin NUP120; bet 44.7 2E+02 0.0068 35.1 14.7 33 730-763 237-269 (950)
353 4gq2_M Nucleoporin NUP120; bet 42.2 2.3E+02 0.0079 34.6 14.7 36 774-810 237-272 (950)
354 1sqj_A OXG-RCBH, oligoxylogluc 41.0 3.4E+02 0.012 32.2 15.7 65 621-686 14-82 (789)
355 1zxa_A CGMP-dependent protein 40.0 9.1 0.00031 30.4 1.0 36 86-121 10-45 (67)
356 3b7f_A Glycosyl hydrolase, BNR 37.9 3.8E+02 0.013 28.2 20.6 51 634-686 22-74 (394)
357 2q6q_A Spindle POLE BODY compo 35.3 28 0.00095 27.2 3.0 47 103-149 5-61 (74)
358 3q6k_A 43.2 kDa salivary prote 31.5 5.1E+02 0.017 27.7 19.4 178 645-850 124-343 (381)
359 3sbq_A Nitrous-oxide reductase 31.2 95 0.0033 35.4 7.8 77 667-760 322-408 (638)
360 3a7o_A Autophagy protein 16; c 30.5 25 0.00087 27.7 2.1 34 101-134 18-51 (75)
361 3a7p_A Autophagy protein 16; c 30.4 34 0.0012 31.6 3.3 47 99-145 87-133 (152)
362 1xn7_A Hypothetical protein YH 23.9 1.1E+02 0.0039 24.7 5.2 44 370-413 4-49 (78)
363 2be1_A Serine/threonine-protei 23.5 1E+02 0.0035 32.7 6.1 67 743-812 58-138 (339)
364 1y0u_A Arsenical resistance op 22.3 2E+02 0.0067 23.7 6.7 59 367-430 30-88 (96)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=273.52 Aligned_cols=216 Identities=23% Similarity=0.328 Sum_probs=181.9
Q ss_pred EEEeeccchhhhhh-----hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578 603 VMYLENKTRAQICQ-----LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 677 (860)
Q Consensus 603 il~l~n~~~~~l~~-----l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp 677 (860)
.+.+|+....+... ..+|.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+.+|.+.|++++|+|
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEcCcCCceEEEEecC
Confidence 45566665544322 236778999999998 7899999999999999999984 66788899999999999999
Q ss_pred CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578 678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVAL 755 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I 755 (860)
++..++++|+.||+ |++||++++ +....+ ..|...+.+++|+|++..++++|+.||+|++
T Consensus 180 ~~~~~l~s~s~D~~---------------v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 180 HKDSVFLSCSEDNR---------------ILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp SCTTEEEEEETTSC---------------EEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCceeeeccccc---------------ccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 99878999999999 999999987 344433 3456679999999987778999999999999
Q ss_pred EeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578 756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 835 (860)
Q Consensus 756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i 835 (860)
||+++++. +..+.+|...|++++|+|+|..+|++|+.||+|++||+.+.+ +....+|.+.|+++
T Consensus 242 wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------~~~~~~H~~~V~~v 305 (344)
T 4gqb_B 242 VDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------LFRSQAHRDFVRDA 305 (344)
T ss_dssp EESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------EEEECCCSSCEEEE
T ss_pred EECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------EEEEcCCCCCEEEE
Confidence 99999887 888999999999999999997679999999999999987632 33467899999999
Q ss_pred EEccCCCeEEEEEeCCCeEee
Q psy4578 836 SWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 836 ~~spdg~~Llasgs~Dg~IrI 856 (860)
+|+|++++++++||.|+.|++
T Consensus 306 ~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEE
T ss_pred EEeCCCCeEEEEEcCCCeEEE
Confidence 999999989999999999986
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=9.4e-28 Score=272.10 Aligned_cols=228 Identities=20% Similarity=0.365 Sum_probs=196.2
Q ss_pred EEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+....+... +.+|.+.|.+++|+| ++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++.+
T Consensus 131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 131 TIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp CEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS---CEEECCCCCSSCEEEEEECSSSSE
T ss_pred eEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCCE
Confidence 45566665555444 446778999999998 7889999999999999999873 557788899999999999999985
Q ss_pred EEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578 682 ILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL 734 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl 734 (860)
+++|+.|++|.+|+.... ++.|+.|++||+.++ .....+.+|...|.++
T Consensus 207 -l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 207 -IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECI 282 (410)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred -EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCCceEEEE
Confidence 899999999999987542 346889999999886 5667888999999999
Q ss_pred EEcCC--------------------CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC
Q psy4578 735 SFNPY--------------------SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 794 (860)
Q Consensus 735 ~~sp~--------------------g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D 794 (860)
+|+|+ |. ++++|+.||+|++||++++.. +..+.+|...|++++|+|+|++ |++|+.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D 359 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKF-ILSCADD 359 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSC-EEEEETT
T ss_pred EEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCCE-EEEEeCC
Confidence 99996 44 599999999999999999886 7888999999999999999986 8899999
Q ss_pred CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|+|++||+.+. .++..+.+|...|++++|+|++++ +++|+.|+.|+|
T Consensus 360 ~~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~v 406 (410)
T 1vyh_C 360 KTLRVWDYKNK--------------RCMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKV 406 (410)
T ss_dssp TEEEEECCTTS--------------CCCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEE
T ss_pred CeEEEEECCCC--------------ceEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 99999999773 345566789999999999999995 779999999987
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=7.2e-27 Score=258.78 Aligned_cols=203 Identities=17% Similarity=0.289 Sum_probs=171.6
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
..+...|.+++|+| + +.+++|+.||+|+|||+.+++..... ....+|.+.|++++|+|+|++ |++|+.||+
T Consensus 79 ~~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~----- 150 (344)
T 4gqb_B 79 VQTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDIC----- 150 (344)
T ss_dssp EEESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSC-----
T ss_pred eccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCe-----
Confidence 34557899999998 3 56889999999999999986432222 234589999999999999985 899999999
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCc
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDE 774 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~ 774 (860)
|++||+.++ ..+..+.+|...|++++|+|++..++++|+.||+|++||+++++. ...+ ..|...
T Consensus 151 ----------i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~ 216 (344)
T 4gqb_B 151 ----------IKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYL 216 (344)
T ss_dssp ----------EEEEETTTT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCC
T ss_pred ----------EEEEECCCC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeecc
Confidence 999999987 677889999999999999999987899999999999999998876 4444 345668
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
+.+++|+|++..++++|+.||+|++||+++. .++..+.+|...|++++|+|+|..++++|+.|++|
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 9999999987778999999999999999873 34566778999999999999997678999999999
Q ss_pred ee
Q psy4578 855 QK 856 (860)
Q Consensus 855 rI 856 (860)
+|
T Consensus 283 ~v 284 (344)
T 4gqb_B 283 AV 284 (344)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=1.6e-26 Score=254.92 Aligned_cols=229 Identities=21% Similarity=0.369 Sum_probs=191.7
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|.+.|++++|+| ++.++++|+.||+|++||..++ ..+..+..|...|.+++|+|++++ +++|+.|+.+.+|
T Consensus 50 ~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNY-VACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSE-EEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCE-EEEEeCCCeEEEE
Confidence 3456888999999998 7899999999999999999874 456677889999999999999985 8999999999999
Q ss_pred ccccc------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578 696 EEEEE------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 696 ~~~~~------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla 745 (860)
+.... ++.|+.|++||+.++ ..+..+.+|.+.|.+++|+|++. +++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~ 200 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTR-LFV 200 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCC-EEE
Confidence 76431 245889999999987 66778889999999999999998 599
Q ss_pred EeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------
Q psy4578 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA----------- 814 (860)
Q Consensus 746 sgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~----------- 814 (860)
+|+.||.|++||++++.. ...+.+|...|++++|+|++.. |++|+.||+|++||+++..........
T Consensus 201 sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 201 SGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence 999999999999999886 7889999999999999999985 899999999999999875432211100
Q ss_pred -cC------------------CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 815 -ED------------------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 815 -~~------------------~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+ .....+..+.+|.+.|++++|+|+|.+ +++|+.|+.|+|
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~i~i 338 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKI 338 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCE-EEEEcCCccEEe
Confidence 00 122345566789999999999999985 779999999986
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=253.09 Aligned_cols=216 Identities=21% Similarity=0.366 Sum_probs=186.7
Q ss_pred eeEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578 600 IEEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 600 l~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
....+.+|+....+... +..+...+.+++|+| ++.++++|+.||.|++|++.++ .....+..|...|.+++|+|+
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCC
Confidence 33456667665554433 345567899999998 7889999999999999999885 445667788899999999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
+++ +++|+.||. |++||++++ +.+..+.+|...|++++|+|++. +|++|+.||.|++||+
T Consensus 176 g~~-lasg~~dg~---------------i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 176 GKY-LASGAIDGI---------------INIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDV 235 (321)
T ss_dssp SSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEET
T ss_pred CCE-EEEEcCCCe---------------EEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEEC
Confidence 995 899999998 999999887 66778889999999999999999 5999999999999999
Q ss_pred CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s 838 (860)
++... ...+.+|...|.+++|+|++++ |++|+.||+|++||+.+ ..++..+.+|.+.|++++|+
T Consensus 236 ~~~~~-~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~s 299 (321)
T 3ow8_A 236 QHANL-AGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT--------------RTCVHTFFDHQDQVWGVKYN 299 (321)
T ss_dssp TTCCE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEC
T ss_pred CCcce-eEEEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCC--------------CEEEEEEcCCCCcEEEEEEC
Confidence 98886 7888999999999999999985 89999999999999987 34567778899999999999
Q ss_pred cCCCeEEEEEeCCCeEee
Q psy4578 839 PNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 839 pdg~~Llasgs~Dg~IrI 856 (860)
|+|.+ +++++.|+.|++
T Consensus 300 ~~g~~-l~s~~~d~~i~v 316 (321)
T 3ow8_A 300 GNGSK-IVSVGDDQEIHI 316 (321)
T ss_dssp TTSSE-EEEEETTCCEEE
T ss_pred CCCCE-EEEEeCCCeEEE
Confidence 99995 779999999986
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=2e-26 Score=256.25 Aligned_cols=217 Identities=18% Similarity=0.281 Sum_probs=178.0
Q ss_pred EEEeeccchhhhhh-----hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578 603 VMYLENKTRAQICQ-----LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 677 (860)
Q Consensus 603 il~l~n~~~~~l~~-----l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp 677 (860)
.+.+|+....+... ..+|.+.|++++|+| ++.+|++|+.||.|++||+.++ ..+..+.+|...|++++|++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQK---AVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEcc
Confidence 35566655444222 235678899999998 7899999999999999999884 56778889999999999999
Q ss_pred CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578 678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD 757 (860)
++..++++++.||+ |++||+++++.. .......|...+.+++|+|++..++++|+.|+.|++||
T Consensus 192 ~~~~~~~s~~~dg~---------------v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 192 GKDTIFLSCGEDGR---------------ILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp TCSSCEEEEETTSC---------------EEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred CCCceeeeeccCCc---------------eEEEECCCCcee-eeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence 98877999999999 999999887432 22234567788999999999877899999999999999
Q ss_pred CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
++++.. +..+.+|...|++++|+|++..+|++|+.||+|++||+++++ ++ ...+|.+.|++++|
T Consensus 256 ~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--------------~~-~~~~H~~~V~~vaf 319 (357)
T 4g56_B 256 IKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--------------VF-RDLSHRDFVTGVAW 319 (357)
T ss_dssp SSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--------------EE-EECCCSSCEEEEEE
T ss_pred CCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--------------Ee-EECCCCCCEEEEEE
Confidence 999886 788999999999999999987679999999999999998732 22 33479999999999
Q ss_pred cc-CCCeEEEEEeCCCeEee
Q psy4578 838 NP-NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 sp-dg~~Llasgs~Dg~IrI 856 (860)
+| ++. ++++|+.||.|++
T Consensus 320 sP~d~~-~l~s~s~Dg~v~i 338 (357)
T 4g56_B 320 SPLDHS-KFTTVGWDHKVLH 338 (357)
T ss_dssp CSSSTT-EEEEEETTSCEEE
T ss_pred eCCCCC-EEEEEcCCCeEEE
Confidence 99 666 6889999999986
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=2.1e-26 Score=261.03 Aligned_cols=216 Identities=22% Similarity=0.350 Sum_probs=190.7
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
..+.+|.++|++++|+| ++.++++|+.||+|++||+.++ .....+.+|...|++++|+|++. ++++|+.||+|.+
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~i 176 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKL 176 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCE
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 34567889999999999 7889999999999999999985 45678889999999999999998 5999999999999
Q ss_pred eccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578 695 VEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 747 (860)
Q Consensus 695 ~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg 747 (860)
|+.... ++.|+.|++||++++ ..+..+.+|...|.++.|+|++. ++++|
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g~-~l~s~ 252 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LIASC 252 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCCC-EEEEE
Confidence 976542 346889999999987 66778899999999999999999 59999
Q ss_pred eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC--------------------CCCEEEEEECCCcEEEEECCCCCc
Q psy4578 748 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH--------------------NETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 748 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~--------------------g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
+.||+|++||+++... ...+.+|...|.+++|+|+ |. ++++|+.||+|++||++++
T Consensus 253 s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~-- 328 (410)
T 1vyh_C 253 SNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG-- 328 (410)
T ss_dssp ETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT--
T ss_pred cCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC--
Confidence 9999999999999886 7788899999999999996 44 5899999999999999873
Q ss_pred ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.++..+.+|.+.|++++|+|+|++ +++|+.|+.|++
T Consensus 329 ------------~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~v 364 (410)
T 1vyh_C 329 ------------MCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRV 364 (410)
T ss_dssp ------------EEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEE
T ss_pred ------------ceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEE
Confidence 456677789999999999999996 679999999986
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=2.9e-26 Score=248.69 Aligned_cols=217 Identities=19% Similarity=0.328 Sum_probs=181.5
Q ss_pred EEEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578 602 EVMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 680 (860)
Q Consensus 602 ~il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 680 (860)
..+.+|+...... ..+..|...|.+++|+| +++++++|+.||+|++||+.++ ..+..+.+|...|++++|+|+++
T Consensus 35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSS
T ss_pred CcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCC---cEEEEEeCCCCcEEEEEEcCCCC
Confidence 3455666655543 33445678899999998 7899999999999999999885 55677889999999999999998
Q ss_pred eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578 681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760 (860)
Q Consensus 681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~ 760 (860)
+ +++|+.||+ |++||++++. .....+.+|...|.+++|+|++..++++|+.||+|++||++.
T Consensus 111 ~-l~sgs~D~~---------------v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 111 Y-VLSGSDDLT---------------VKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp E-EEEEETTSC---------------EEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred E-EEEECCCCe---------------EEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 5 899999999 9999998752 344567899999999999996544699999999999999988
Q ss_pred CceeeEEeccCCCceEEEEEcC--CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578 761 LKLKLHSFESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 761 ~~~~~~~~~~h~~~V~~l~fsp--~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s 838 (860)
.........+|...+..+.|+| ++. +|++|+.||+|++||+++ ..++..+.+|...|.+++|+
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~--------------~~~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 173 STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT--------------KSCVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEC
T ss_pred CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC--------------CccceeeCCCCCCEEEEEEC
Confidence 7764444556778899999987 555 589999999999999987 34567778999999999999
Q ss_pred cCCCeEEEEEeCCCeEee
Q psy4578 839 PNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 839 pdg~~Llasgs~Dg~IrI 856 (860)
|+++ ++++|+.||.|++
T Consensus 238 p~~~-~l~s~s~Dg~i~i 254 (304)
T 2ynn_A 238 PTLP-IIISGSEDGTLKI 254 (304)
T ss_dssp SSSS-EEEEEETTSCEEE
T ss_pred CCCC-EEEEEcCCCeEEE
Confidence 9999 5889999999986
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=250.97 Aligned_cols=217 Identities=20% Similarity=0.320 Sum_probs=186.0
Q ss_pred hhhcccceeeeEeecc---CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 617 LLDKLRLLIDVAWHLL---HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~---~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
..+|.+.|++++|+|+ ++.+|++|+.||+|++|++.++.. .....+.+|...|.+++|++++. ++++|+.|+++.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~ 105 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIR 105 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEE
Confidence 4568899999999974 467899999999999999976421 33456789999999999999998 599999999999
Q ss_pred eeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578 694 EVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 746 (860)
Q Consensus 694 ~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas 746 (860)
+|+.... +..+|.|++||+.++ .....+..|...|.+++|+|++.+ +++
T Consensus 106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~-las 181 (321)
T 3ow8_A 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKY-LAS 181 (321)
T ss_dssp EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTTSSE-EEE
T ss_pred EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCCCCE-EEE
Confidence 9987543 245789999999887 566777889999999999999995 999
Q ss_pred eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578 747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 826 (860)
Q Consensus 747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~ 826 (860)
|+.||.|++||+++++. +..+.+|...|++++|+|+++. |++|+.||.|++||+++. .....+.
T Consensus 182 g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~--------------~~~~~~~ 245 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHA--------------NLAGTLS 245 (321)
T ss_dssp EETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTC--------------CEEEEEC
T ss_pred EcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCc--------------ceeEEEc
Confidence 99999999999999886 7889999999999999999985 899999999999999873 3456678
Q ss_pred CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+|...|.+++|+|++.+ +++++.|+.|+|
T Consensus 246 ~h~~~v~~~~~sp~~~~-l~s~s~D~~v~i 274 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTH-FVSSSSDKSVKV 274 (321)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred CCCCceEEEEECCCCCE-EEEEeCCCcEEE
Confidence 89999999999999995 779999999986
No 10
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.4e-26 Score=260.81 Aligned_cols=229 Identities=69% Similarity=1.074 Sum_probs=193.8
Q ss_pred hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc----cCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578 613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688 (860)
Q Consensus 613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~----~~~~~~~~h~~~V~~l~~sp~g~~llasgs~ 688 (860)
.+..+..|.+.|++++|+|.+..+|++|+.||.|++|++.++... .....+.+|...|.+++|+|++..++++|+.
T Consensus 173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 344455777899999999955559999999999999999874321 1245667899999999999976668999999
Q ss_pred CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 768 (860)
Q Consensus 689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~ 768 (860)
||. |++||++++.....+..+..|...|++++|+|++.+++++|+.||.|++||+++...++..+
T Consensus 253 dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 253 DQK---------------LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp TSE---------------EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred CCe---------------EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 998 99999998754456777789999999999999999889999999999999999866568888
Q ss_pred ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578 769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg 848 (860)
.+|...|++++|+|+++.++++|+.||.|++||+..............++..++..+.+|...|++++|+|+++++++++
T Consensus 318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 99999999999999998889999999999999998855443333333455678888999999999999999999889999
Q ss_pred eCCCeEee
Q psy4578 849 SEDNIMQK 856 (860)
Q Consensus 849 s~Dg~IrI 856 (860)
+.||.|+|
T Consensus 398 s~dg~i~i 405 (430)
T 2xyi_A 398 SEDNIMQV 405 (430)
T ss_dssp ETTSEEEE
T ss_pred ECCCCEEE
Confidence 99999886
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=2.8e-25 Score=240.88 Aligned_cols=222 Identities=18% Similarity=0.286 Sum_probs=182.6
Q ss_pred eEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578 601 EEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 679 (860)
Q Consensus 601 ~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 679 (860)
...+.+|+....+ +..+..|.+.|.+++|+| ++.++++|+.||+|++||+.++ ......+.+|...|.+++|+|++
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTC
T ss_pred CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCC
Confidence 3445566665544 444556778999999998 7889999999999999999874 23456778999999999999965
Q ss_pred CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEe
Q psy4578 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWD 757 (860)
Q Consensus 680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWD 757 (860)
..++++|+.||+ |++||+++.. .......+|...+..++|+| ++. ++++|+.||+|++||
T Consensus 153 ~~~l~sgs~D~~---------------v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 153 PSTFASGCLDRT---------------VKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWD 214 (304)
T ss_dssp TTEEEEEETTSE---------------EEEEETTCSS--CSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCe---------------EEEEECCCCC--ccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEe
Confidence 446999999999 9999998763 22333346778899999987 555 599999999999999
Q ss_pred CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
++++.. +..+.+|...|.+++|+|+++ +|++|+.||+|++||+.+. .+...+..|...+.+++|
T Consensus 215 ~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~--------------~~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 215 YQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY--------------KVEKTLNVGLERSWCIAT 278 (304)
T ss_dssp TTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC--------------CEEEEECCSSSSEEEEEE
T ss_pred CCCCcc-ceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC--------------ceeeeccCCCccEEEEEE
Confidence 999887 888999999999999999998 5899999999999999873 455667788899999999
Q ss_pred ccCCCe-EEEEEeCCCeEeeccC
Q psy4578 838 NPNEPW-VICSVSEDNIMQKPFK 859 (860)
Q Consensus 838 spdg~~-Llasgs~Dg~IrI~f~ 859 (860)
+|++.. ++++|++||.+.+.+.
T Consensus 279 ~~~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 279 HPTGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp CTTCGGGCEEEEETTEEEEEECC
T ss_pred CCCCCceEEEEecCCceEEEEec
Confidence 998853 4889999999887653
No 12
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=3.7e-25 Score=239.11 Aligned_cols=215 Identities=22% Similarity=0.345 Sum_probs=171.4
Q ss_pred hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578 614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK 690 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg 690 (860)
+..+.+|.+.|.+++|++. ++.+|++|+.||+|++||+.++.. ..+..+.+|...|.+++|+|+ +. ++++|+.||
T Consensus 46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~ 123 (297)
T 2pm7_B 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDG 123 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCC
Confidence 4455678899999999863 478999999999999999987532 345567789999999999997 66 589999999
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC------------CcEEEEeeCCCcEEEEeC
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALWDL 758 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g------------~~llasgs~Dg~I~IWDl 758 (860)
+ |++||+++... .....+.+|...|.+++|+|++ ..+|++|+.||+|++||+
T Consensus 124 ~---------------v~~wd~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 124 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp E---------------EEEEEBCSSSC-BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred c---------------EEEEEecCCCc-eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 8 99999987532 1235678899999999999973 236999999999999999
Q ss_pred CCCce---eeEEeccCCCceEEEEEcCCC--CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceE
Q psy4578 759 RNLKL---KLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833 (860)
Q Consensus 759 ~~~~~---~~~~~~~h~~~V~~l~fsp~g--~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~ 833 (860)
++... ....+.+|...|.+++|+|++ ..+|++|+.|++|++||++....... .......+|...|.
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~---------~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDVLW 258 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE---------EEESSSSCCSSCEE
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc---------eeeeecccCCCcEE
Confidence 87652 256788999999999999986 34699999999999999876321100 00111146788999
Q ss_pred EEEEccCCCeEEEEEeCCCeEee
Q psy4578 834 DFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 834 ~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+++|+|+|++ +++++.|+.|++
T Consensus 259 ~~~~s~~g~~-las~~~D~~v~l 280 (297)
T 2pm7_B 259 RASWSLSGNV-LALSGGDNKVTL 280 (297)
T ss_dssp EEEECSSSCC-EEEEETTSCEEE
T ss_pred EEEECCCCCE-EEEEcCCCcEEE
Confidence 9999999995 779999999986
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=246.64 Aligned_cols=218 Identities=23% Similarity=0.414 Sum_probs=177.2
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
.+|.+.|.+++|+| ++.+|++|+.||+|++|+...+. ...+..+.+|...|.+++|+|++++ |++|+.|++
T Consensus 58 ~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~------ 128 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKS------ 128 (345)
T ss_dssp SSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSC------
T ss_pred cccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCe------
Confidence 46778999999999 78999999999999999998643 2456778899999999999999984 999999999
Q ss_pred cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceE
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIF 776 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~ 776 (860)
|++||+.+......+..+.+|...|.+++|+|++.+ |++|+.||+|++||.++... ....+.+|...|+
T Consensus 129 ---------v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 129 ---------VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp ---------EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred ---------EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 999999876443456678899999999999999995 99999999999999988753 2567889999999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-cCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
+++|+|+|++ |++|+.||+|++||............. ......++....+ |...|.+++|+|++.. +++++.|+.|
T Consensus 199 ~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i 276 (345)
T 3fm0_A 199 SLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAI 276 (345)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCE
T ss_pred EEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeE
Confidence 9999999985 899999999999997543322221110 0111233444444 8899999999999995 7788999998
Q ss_pred ee
Q psy4578 855 QK 856 (860)
Q Consensus 855 rI 856 (860)
++
T Consensus 277 ~v 278 (345)
T 3fm0_A 277 RV 278 (345)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=8.2e-26 Score=249.80 Aligned_cols=207 Identities=24% Similarity=0.414 Sum_probs=173.5
Q ss_pred hhhccc-ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 617 LLDKLR-LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 617 l~~~~~-~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
+.+|.+ .|.+++|+| ++.+|++|+.||+|+|||+.++..........+|...|++++|+|++++ |++|+.|++
T Consensus 11 ~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~s~D~~---- 84 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDAT---- 84 (345)
T ss_dssp ECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE-EEEEETTSC----
T ss_pred ecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE-EEEEECCCc----
Confidence 345665 899999999 7889999999999999999875321122234689999999999999985 899999999
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce--eeEEeccCCC
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFESHKD 773 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~h~~ 773 (860)
+++||+..+.. ..+..+.+|...|.+++|+|++. +|++|+.||+|++||+++... .+..+.+|..
T Consensus 85 -----------v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 85 -----------TCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp -----------EEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred -----------EEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 99999876521 34667889999999999999998 499999999999999987642 2566788999
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
.|.+++|+|+++. |++|+.||.|++||..... ..+...+.+|...|++++|+|+|++ +++|+.|++
T Consensus 152 ~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~------------~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~ 217 (345)
T 3fm0_A 152 DVKHVVWHPSQEL-LASASYDDTVKLYREEEDD------------WVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRT 217 (345)
T ss_dssp CEEEEEECSSSSC-EEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSC
T ss_pred CeEEEEECCCCCE-EEEEeCCCcEEEEEecCCC------------EEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCe
Confidence 9999999999986 8999999999999987632 1245667899999999999999994 789999999
Q ss_pred Eee
Q psy4578 854 MQK 856 (860)
Q Consensus 854 IrI 856 (860)
|+|
T Consensus 218 v~i 220 (345)
T 3fm0_A 218 VRI 220 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=2.3e-25 Score=242.99 Aligned_cols=225 Identities=17% Similarity=0.289 Sum_probs=175.3
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|++++|+|+++++|+||+.||+|+|||+.+.+. ..+...+.+|...|.+++|+|++.+ +++|+.|+.+.+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~-l~s~~~d~~i~~ 112 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-ALSGSWDGTLRL 112 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE-EEEEcccccceE
Confidence 5678899999999997789999999999999999986532 2345677899999999999999985 888888888776
Q ss_pred eccccc---------------------------c---------------------------------------------c
Q psy4578 695 VEEEEE---------------------------E---------------------------------------------N 702 (860)
Q Consensus 695 ~~~~~~---------------------------~---------------------------------------------~ 702 (860)
|..... + .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 654432 1 1
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 782 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp 782 (860)
.++.|++||++++ .....+.+|.+.|++++|+|++. +|++|+.||.|++||+++... +..+. +...|.+++|+|
T Consensus 193 ~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~ 266 (340)
T 4aow_A 193 WDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSP 266 (340)
T ss_dssp TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECS
T ss_pred CCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCC
Confidence 2445666666554 45566788999999999999999 599999999999999999876 66666 456899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++. +++++.|+.|++||+++......... ........+|...|++++|+|+|++ +++|+.||.|+|
T Consensus 267 ~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~Dg~v~i 332 (340)
T 4aow_A 267 NRY--WLCAATGPSIKIWDLEGKIIVDELKQ-----EVISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRV 332 (340)
T ss_dssp SSS--EEEEEETTEEEEEETTTTEEEEEECC-----C-------CCCCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred CCc--eeeccCCCEEEEEECCCCeEEEeccc-----cceeeeccCCCCCEEEEEECCCCCE-EEEEeCCCEEEE
Confidence 885 56777899999999987544332211 1223345578999999999999995 779999999986
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=4.5e-25 Score=248.37 Aligned_cols=209 Identities=22% Similarity=0.368 Sum_probs=175.7
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-- 700 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-- 700 (860)
.|.+++|+| ++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++.. +++|+.|+++.+|+....
T Consensus 125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp BEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCee
Confidence 489999998 7899999999999999999874 556778899999999999999985 899999999999986542
Q ss_pred -------------------------ccCCCcEEEEeCCCCCCCCCeeee-------cCCCCCeEEEEEcCCCCcEEEEee
Q psy4578 701 -------------------------ENYDQKLMIWDTRSHNVSKPSHTV-------DAHTAEVNCLSFNPYSEYILATGS 748 (860)
Q Consensus 701 -------------------------~~~dg~I~iwDl~~~~~~~~~~~~-------~~h~~~I~sl~~sp~g~~llasgs 748 (860)
++.|+.|++||++++ ..+..+ .+|...|.+++|+|+|.+ +++|+
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s 275 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGS 275 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSE-EEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEe
Confidence 245789999999886 333333 579999999999999995 89999
Q ss_pred CCCcEEEEeCCCCce-----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578 749 ADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817 (860)
Q Consensus 749 ~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~ 817 (860)
.||.|++||+++... ....+.+|...|.+++|+|++.+ |++|+.||.|++||+.++
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~------------ 342 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG------------ 342 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC------------
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC------------
Confidence 999999999976421 24567789999999999999985 899999999999998873
Q ss_pred CCccEEEecCccCceEEEEEcc------CCCeEEEEEeCCCeEee
Q psy4578 818 PPELLFIHGGHTAKISDFSWNP------NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 818 ~~~~i~~~~~h~~~I~~i~~sp------dg~~Llasgs~Dg~IrI 856 (860)
.++..+.+|.+.|.+++|++ ++. ++++|+.||.|+|
T Consensus 343 --~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~i 384 (393)
T 1erj_A 343 --NPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARI 384 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEE
T ss_pred --eEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEE
Confidence 34567779999999999987 456 6889999999987
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.94 E-value=3.4e-25 Score=264.36 Aligned_cols=244 Identities=17% Similarity=0.257 Sum_probs=191.2
Q ss_pred EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+..... ...+.+|.+.|++++|+| ++.++|+|+.||+|+|||+.++.. .....+.+|.+.|.+++|+|+++.
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCE
Confidence 45566665444 344557888999999999 889999999999999999975432 234567789999999999999996
Q ss_pred EEEEEeCC----Cceeeecccc--------------------------cccCCCcEEEEeCCCCCCCCCeeeecCCCCCe
Q psy4578 682 ILATGSAD----KTQFEVEEEE--------------------------EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV 731 (860)
Q Consensus 682 llasgs~D----g~i~~~~~~~--------------------------~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I 731 (860)
+++++.+ +.+++|+... .++.|+.|++||..+. +....+.+|...|
T Consensus 118 -l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V 193 (611)
T 1nr0_A 118 -IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFV 193 (611)
T ss_dssp -EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCE
T ss_pred -EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccccCce
Confidence 5555543 4677775321 1346889999998765 5667889999999
Q ss_pred EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-------cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 732 NCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-------~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.+++|+|+|. +|++|+.||+|++||+.++.. ...+. +|.+.|.+++|+|+|++ |++|+.|++|++||+.+
T Consensus 194 ~~v~fspdg~-~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 194 HSVRYNPDGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred EEEEECCCCC-EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCC
Confidence 9999999999 599999999999999998876 55563 79999999999999985 89999999999999988
Q ss_pred CCccccccccc-----------------------------CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 805 IGEEQSTEDAE-----------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 805 ~~~~~~~~~~~-----------------------------~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
........... ...........+|...|++++|+|+|++ +++++.|+.|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~ 349 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHIN 349 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEE
Confidence 65443221100 0012244566789999999999999995 77999999998
Q ss_pred e
Q psy4578 856 K 856 (860)
Q Consensus 856 I 856 (860)
+
T Consensus 350 ~ 350 (611)
T 1nr0_A 350 S 350 (611)
T ss_dssp E
T ss_pred E
Confidence 5
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=8.8e-26 Score=253.00 Aligned_cols=253 Identities=18% Similarity=0.247 Sum_probs=194.6
Q ss_pred eeeecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCee
Q psy4578 587 NFFKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSH 661 (860)
Q Consensus 587 ~ll~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~ 661 (860)
.+...|.+..+......+.+|+....+ ...+..|...|.+++|+| ++.++++|+.|+.|++||+.+.. ......
T Consensus 73 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 73 DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence 333334333333333445666655444 344456778899999998 78999999999999999997532 123445
Q ss_pred eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------------ccCCCcEE
Q psy4578 662 TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------------ENYDQKLM 708 (860)
Q Consensus 662 ~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------------~~~dg~I~ 708 (860)
.+.+|.+.|.++.|+|++...+++|+.|+++.+|+.... ++.|+.|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 678999999999999987667999999999999976421 24588999
Q ss_pred EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-------CceEEEEEc
Q psy4578 709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-------DEIFQVQWS 781 (860)
Q Consensus 709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~~l~fs 781 (860)
+||++... ..+..+.+|.+.|++++|+|++.+ |++|+.||+|++||++++.. +..+..+. ..|++++|+
T Consensus 232 ~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 232 LWDLRITS--RAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp EEETTTTC--CCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEEC
T ss_pred EEECCCCC--cceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEEC
Confidence 99998542 566788899999999999999995 99999999999999999876 55555432 348999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|+|++ +++|+.||.|++||+...+...... ....+|.+.|++++|+|+|. .+++|+.|+.|+|
T Consensus 308 ~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~----------~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~i 370 (380)
T 3iz6_a 308 ISGRL-LFAGYSNGDCYVWDTLLAEMVLNLG----------TLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKI 370 (380)
T ss_dssp SSSSE-EEEECTTSCEEEEETTTCCEEEEEC----------CSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEE
T ss_pred CCCCE-EEEEECCCCEEEEECCCCceEEEEe----------cccCCCCCceEEEEECCCCC-EEEEeeCCCCEEE
Confidence 99985 8899999999999988744321110 11257999999999999999 4889999999986
No 19
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=6.7e-25 Score=248.99 Aligned_cols=262 Identities=21% Similarity=0.418 Sum_probs=210.3
Q ss_pred cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcE
Q psy4578 570 FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKL 646 (860)
Q Consensus 570 f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I 646 (860)
|+.+.+|...+||+++.--+..+.+... ++...+++|+...++...++ +|...|++|+|+| ++.+|++|+.||.|
T Consensus 94 ~~~l~ap~~~~d~y~~~l~wS~~n~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v 171 (420)
T 4gga_A 94 DRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEV 171 (420)
T ss_dssp SEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred ceEEECCCCcccccceeEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeE
Confidence 6778889999999887655544444322 34567888988877665544 4567799999998 78999999999999
Q ss_pred EEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--------------------------
Q psy4578 647 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-------------------------- 700 (860)
Q Consensus 647 ~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-------------------------- 700 (860)
++||+.++ +.+..+.+|...+.+++|++ . ++++|+.|+.+..|+....
T Consensus 172 ~iWd~~~~---~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l 245 (420)
T 4gga_A 172 QLWDVQQQ---KRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 245 (420)
T ss_dssp EEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEEcCCC---cEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCee
Confidence 99999984 56778889999999999864 4 6999999999988875532
Q ss_pred --ccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEe--eCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578 701 --ENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATG--SADKTVALWDLRNLKLKLHSFESHKDEI 775 (860)
Q Consensus 701 --~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasg--s~Dg~I~IWDl~~~~~~~~~~~~h~~~V 775 (860)
+..|+.+++||..+++. ...+.....|...|.+++|+|.+..+++++ +.|++|++||++++.. ...+. +...+
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~-~~~~v 323 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVD-AHSQV 323 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEE-CSSCE
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceeec-cccce
Confidence 24588999999987642 234567788999999999999988877764 5799999999999886 55555 44678
Q ss_pred EEEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 776 FQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
.++.|+|+++.++++++ .||.|++||+.+ ..++..+.+|.+.|++++|+|+|.+ ++||+.|++|
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--------------~~~v~~l~gH~~~V~~l~~spdg~~-l~S~s~D~tv 388 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYPT--------------MAKVAELKGHTSRVLSLTMSPDGAT-VASAAADETL 388 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSC-EEEEETTTEE
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCE-EEEEecCCeE
Confidence 99999999987444333 789999999987 3456778899999999999999995 7799999999
Q ss_pred ee
Q psy4578 855 QK 856 (860)
Q Consensus 855 rI 856 (860)
+|
T Consensus 389 ri 390 (420)
T 4gga_A 389 RL 390 (420)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=4.3e-25 Score=245.52 Aligned_cols=220 Identities=18% Similarity=0.281 Sum_probs=172.5
Q ss_pred EEEEeeccchhhh-----hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC-eeeccCCCCCeeEEEE
Q psy4578 602 EVMYLENKTRAQI-----CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSF 675 (860)
Q Consensus 602 ~il~l~n~~~~~l-----~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~-~~~~~~h~~~V~~l~~ 675 (860)
..+++|+...... ....+|...|++++|+| ++ .+++++.||+|+|||+.+++.... .....+|...|++++|
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 70 GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp EEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 3455665543322 22345677899999998 44 456788899999999987643221 2234579999999999
Q ss_pred ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578 676 NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 755 (860)
Q Consensus 676 sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I 755 (860)
+|++++ +++|+.||+ |++||++++ ..+..+.+|...|++++|+|++..++++++.||.|++
T Consensus 148 spdg~~-l~sgs~dg~---------------v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 148 FSDGTQ-AVSGGKDFS---------------VKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp CSSSSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred CCCCCE-EEEEeCCCe---------------EEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 999985 899999999 999999987 6777889999999999999998767999999999999
Q ss_pred EeCCCCceee-EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 756 WDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 756 WDl~~~~~~~-~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
||+++++... .....|...+.+++|+|++..+|++|+.|+.|++||+++. ..+..+.+|...|++
T Consensus 209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAVHSQNITG 274 (357)
T ss_dssp CCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECCCSSCEEE
T ss_pred EECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEeccceeEEE
Confidence 9999877521 2234577889999999998778999999999999999873 345667789999999
Q ss_pred EEEccCCCeEEEEEeCCCeEee
Q psy4578 835 FSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 835 i~~spdg~~Llasgs~Dg~IrI 856 (860)
++|+|++..++++|+.|++|+|
T Consensus 275 l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEE
T ss_pred EEEcCCCCCEEEEEeCCCEEEE
Confidence 9999998767899999999986
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.94 E-value=9e-25 Score=242.53 Aligned_cols=200 Identities=25% Similarity=0.404 Sum_probs=173.0
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCcee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQF 693 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~ 693 (860)
.+..|.+.|.+++|+| ++..+++|+.||+|++||+.++ +.+..+.+|...|.+++|+|+ +. .+++|+.||+
T Consensus 149 ~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~-- 221 (354)
T 2pbi_B 149 SVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKK-- 221 (354)
T ss_dssp EEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSC--
T ss_pred eeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCe--
Confidence 3446778899999998 7888999999999999999884 557788899999999999885 45 6999999999
Q ss_pred eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--C
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--H 771 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h 771 (860)
|++||++++ ..+..+.+|...|++++|+|++. .+++|+.||+|++||++.... +..+.. +
T Consensus 222 -------------v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~ 283 (354)
T 2pbi_B 222 -------------AMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-VAIYSKESI 283 (354)
T ss_dssp -------------EEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTC
T ss_pred -------------EEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCc
Confidence 999999987 66778889999999999999998 599999999999999998765 444443 3
Q ss_pred CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D 851 (860)
...+.+++|+|+|+. +++|+.||.|++||+.++ ..+..+.+|.+.|++++|+|+|++ +++|+.|
T Consensus 284 ~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~--------------~~~~~l~~h~~~v~~l~~spdg~~-l~sgs~D 347 (354)
T 2pbi_B 284 IFGASSVDFSLSGRL-LFAGYNDYTINVWDVLKG--------------SRVSILFGHENRVSTLRVSPDGTA-FCSGSWD 347 (354)
T ss_dssp CSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC--------------SEEEEECCCSSCEEEEEECTTSSC-EEEEETT
T ss_pred ccceeEEEEeCCCCE-EEEEECCCcEEEEECCCC--------------ceEEEEECCCCcEEEEEECCCCCE-EEEEcCC
Confidence 457899999999984 899999999999999773 345667799999999999999995 7799999
Q ss_pred CeEee
Q psy4578 852 NIMQK 856 (860)
Q Consensus 852 g~IrI 856 (860)
+.|+|
T Consensus 348 ~~v~v 352 (354)
T 2pbi_B 348 HTLRV 352 (354)
T ss_dssp SEEEE
T ss_pred CCEEe
Confidence 99986
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=6.5e-25 Score=237.18 Aligned_cols=210 Identities=19% Similarity=0.319 Sum_probs=174.1
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|.+++|+| ++.+|++|+.||+|+|||+..+. ...+..+.+|.+.|++++|+++ +. +|++|+.||+
T Consensus 5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~--- 78 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK--- 78 (297)
T ss_dssp CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTE---
T ss_pred ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCE---
Confidence 346778999999998 78999999999999999997532 3556788999999999999864 65 6999999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEeccC
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFESH 771 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h 771 (860)
|++||+.++.. ..+..+.+|...|.+++|+|+ +. ++++|+.||.|++||+++... ....+.+|
T Consensus 79 ------------v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 79 ------------VMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp ------------EEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred ------------EEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999987632 345667889999999999997 66 599999999999999987642 24567789
Q ss_pred CCceEEEEEcCCC------------CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578 772 KDEIFQVQWSPHN------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839 (860)
Q Consensus 772 ~~~V~~l~fsp~g------------~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp 839 (860)
...|.+++|+|++ ..+|++|+.||+|++||+++.... ......+.+|.+.|.+++|+|
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEECC
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------EEEEEEecCCCCceEEEEECC
Confidence 9999999999973 235999999999999999763321 124556789999999999999
Q ss_pred CC--CeEEEEEeCCCeEee
Q psy4578 840 NE--PWVICSVSEDNIMQK 856 (860)
Q Consensus 840 dg--~~Llasgs~Dg~IrI 856 (860)
++ ..++++++.|++|+|
T Consensus 215 ~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCSSSEEEEEEETTSCEEE
T ss_pred CCCCceEEEEEECCCcEEE
Confidence 96 347889999999986
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=2.7e-25 Score=242.83 Aligned_cols=223 Identities=17% Similarity=0.296 Sum_probs=180.2
Q ss_pred hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
+..+.+|...|.+++|+| ++.++++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++. ++++|+.|+++.
T Consensus 58 ~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~ 132 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIK 132 (319)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEE
T ss_pred ceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEE
Confidence 334557888999999998 7899999999999999999884 55678889999999999999998 599999999999
Q ss_pred eeccccc--------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC
Q psy4578 694 EVEEEEE--------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741 (860)
Q Consensus 694 ~~~~~~~--------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~ 741 (860)
+|+.... ++.|+.|++||+++. .....+.+|...|.+++|+|+|.
T Consensus 133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGT 209 (319)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSS
T ss_pred EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCC
Confidence 9976421 245789999999876 55677889999999999999999
Q ss_pred cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCcc
Q psy4578 742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821 (860)
Q Consensus 742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~ 821 (860)
+ |++|+.||.|++||+++... +..+.. ...|.+++|+|++.. +++++ ++.+++|++............ .
T Consensus 210 ~-l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~-la~~~-~~~i~v~~~~~~~~~~~~~~~------~ 278 (319)
T 3frx_A 210 L-IASAGKDGEIMLWNLAAKKA-MYTLSA-QDEVFSLAFSPNRYW-LAAAT-ATGIKVFSLDPQYLVDDLRPE------F 278 (319)
T ss_dssp E-EEEEETTCEEEEEETTTTEE-EEEEEC-CSCEEEEEECSSSSE-EEEEE-TTEEEEEEETTEEEEEEECCC------C
T ss_pred E-EEEEeCCCeEEEEECCCCcE-EEEecC-CCcEEEEEEcCCCCE-EEEEc-CCCcEEEEeCcCeeeeccCcc------c
Confidence 4 99999999999999999876 666664 568999999999974 66666 556999998864332211100 0
Q ss_pred EEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 822 i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
......|...+.+++|+|+|++ +++|+.|+.|+|
T Consensus 279 ~~~~~~~~~~v~~~~~spdg~~-l~sg~~Dg~i~v 312 (319)
T 3frx_A 279 AGYSKAAEPHAVSLAWSADGQT-LFAGYTDNVIRV 312 (319)
T ss_dssp TTCCGGGCCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred cccccCcCcceeEEEECCCCCE-EEEeecCceEEE
Confidence 0012346678999999999995 779999999986
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=4.7e-25 Score=240.96 Aligned_cols=203 Identities=22% Similarity=0.397 Sum_probs=175.6
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|++++|+|.++++|++|+.||+|++|++..... ..++..+.+|...|.+++|+|++.+ +++|+.|++
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~--- 88 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-ALSASWDKT--- 88 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-EEEEeCCCE---
Confidence 4578899999999996678999999999999999874321 2346678899999999999999985 899999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|++||+.++ +.+..+.+|...|.+++|+|++. ++++|+.||+|++||++... +..+.+|...
T Consensus 89 ------------v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~ 150 (319)
T 3frx_A 89 ------------LRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150 (319)
T ss_dssp ------------EEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCE--EEEECCCSSC
T ss_pred ------------EEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe--EEEEeccCCc
Confidence 999999987 66778899999999999999998 49999999999999997543 6778899999
Q ss_pred eEEEEEcCCCC-----CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 775 IFQVQWSPHNE-----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 775 V~~l~fsp~g~-----~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
|.+++|+|.+. ..+++|+.|+.|++||+++. .....+.+|...|.+++|+|+|. ++++|+
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~ 215 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--------------QIEADFIGHNSNINTLTASPDGT-LIASAG 215 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTT--------------EEEEEECCCCSCEEEEEECTTSS-EEEEEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--------------hhheeecCCCCcEEEEEEcCCCC-EEEEEe
Confidence 99999998542 25899999999999999872 34566778999999999999999 588999
Q ss_pred CCCeEee
Q psy4578 850 EDNIMQK 856 (860)
Q Consensus 850 ~Dg~IrI 856 (860)
.|+.|++
T Consensus 216 ~dg~i~i 222 (319)
T 3frx_A 216 KDGEIML 222 (319)
T ss_dssp TTCEEEE
T ss_pred CCCeEEE
Confidence 9999986
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=2.4e-25 Score=249.52 Aligned_cols=224 Identities=19% Similarity=0.342 Sum_probs=181.5
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|.+.|++++|+| ++.+|++|+.||+|+|||..++ .....+..|...|.+++|+|+|++ +++|+.|+.+.+|
T Consensus 61 ~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~-las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQS-VACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSE-EEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCE-EEEeeCCCcEEEE
Confidence 3557889999999999 7889999999999999999874 556778899999999999999985 8999999999999
Q ss_pred ccccc-----------------------------------ccCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEE
Q psy4578 696 EEEEE-----------------------------------ENYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLS 735 (860)
Q Consensus 696 ~~~~~-----------------------------------~~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~ 735 (860)
+.... ++.|+.|++||+.++ ..+..+ .+|...|.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG---QRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---CEEEEECCCSSSSCCSCEEEEE
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---cEEEEeecccCCCCccCeEEEE
Confidence 75320 246889999999987 444444 67999999999
Q ss_pred EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc
Q psy4578 736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 815 (860)
Q Consensus 736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~ 815 (860)
|+|.+..++++|+.||+|++||++.....+..+.+|.+.|++++|+|+|.. |++|+.||+|++||++++..........
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 988444469999999999999998654457889999999999999999985 8999999999999999855433221110
Q ss_pred CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
. ....+...|++++|+|+|++ +++|+.||.|++
T Consensus 292 ~-------~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~v 324 (380)
T 3iz6_a 292 D-------RNDNELPIVTSVAFSISGRL-LFAGYSNGDCYV 324 (380)
T ss_dssp S-------SSCCSSCSCSEEEECSSSSE-EEEECTTSCEEE
T ss_pred c-------ccccccCceEEEEECCCCCE-EEEEECCCCEEE
Confidence 0 00123345899999999995 778999998886
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=1.4e-24 Score=239.42 Aligned_cols=224 Identities=23% Similarity=0.395 Sum_probs=176.1
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|...|.+++|+| ++.++++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++++ +++|+.|+++.+|
T Consensus 71 ~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~w 145 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLW 145 (343)
T ss_dssp EECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEE
T ss_pred hhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEE
Confidence 3557788999999998 7889999999999999999884 456778899999999999999995 8999999999999
Q ss_pred ccccc---------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578 696 EEEEE---------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736 (860)
Q Consensus 696 ~~~~~---------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~ 736 (860)
+.... ++.|+.|++||... .....+.+|...|.+++|
T Consensus 146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEEE
T ss_pred eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEEE
Confidence 76311 23478999999432 456678899999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc--ccccc
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--STEDA 814 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~--~~~~~ 814 (860)
+|+|.+ |++|+.||.|++||++........+. +...|.+++|+|++.. + +++.|+.|++||+.+..... ....
T Consensus 222 s~~g~~-l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~-l-a~~~d~~v~iw~~~~~~~~~~~~~~~- 296 (343)
T 2xzm_R 222 SPNGKY-IATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQW-V-AVGTDQGVKIFNLMTQSKAPVCTIEA- 296 (343)
T ss_dssp CTTSSE-EEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCE-E-EEEESSCEEEEESSSCCSCSEEECCC-
T ss_pred CCCCCE-EEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCE-E-EEECCCCEEEEEeCCCCCCceEEeec-
Confidence 999995 99999999999999965544344443 5567999999999973 4 45668899999998754432 1110
Q ss_pred cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
..........+|...|.+++|+|+|++ +++|+.||.|++
T Consensus 297 --~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 297 --EPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRT 335 (343)
T ss_dssp --CSGGGBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEE
T ss_pred --CcchhhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEE
Confidence 000011112368889999999999995 779999999986
No 27
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=5.2e-24 Score=237.78 Aligned_cols=234 Identities=21% Similarity=0.250 Sum_probs=189.7
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee----------ccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT----------VDAHTAEVNCLSFNPYSEYILATGS 687 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~----------~~~h~~~V~~l~~sp~g~~llasgs 687 (860)
..|.+.|++++|+|.++.+|++|+.||.|++||+.++........ ..+|...|.+++|+|++..++++|+
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 357789999999986788999999999999999998644332221 1358999999999995544699999
Q ss_pred CCCceeeeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578 688 ADKTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 738 (860)
Q Consensus 688 ~Dg~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp 738 (860)
.||.+.+|+.... +..++.|++||++++ ..+..+.+|...|.+++|+|
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCCCSCEEEEEECS
T ss_pred CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCCCCcEEEEEECC
Confidence 9999999987643 235789999999987 56678889999999999999
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCceeeEEe---------------ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578 739 YSEYILATGSADKTVALWDLRNLKLKLHSF---------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803 (860)
Q Consensus 739 ~g~~llasgs~Dg~I~IWDl~~~~~~~~~~---------------~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~ 803 (860)
++.+++++|+.||.|++||++........+ .+|...|.+++|+|++++ |++|+.||.|++||+.
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSS 275 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECC
Confidence 999889999999999999998876444544 568899999999999985 8899999999999999
Q ss_pred CCCccccccccc---------------------------------CCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 804 KIGEEQSTEDAE---------------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 804 ~~~~~~~~~~~~---------------------------------~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
+........... ......+..+.+|.+.|++++|+|+++ ++++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~ 354 (408)
T 4a11_B 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-ELYSGSR 354 (408)
T ss_dssp TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EEEEEET
T ss_pred CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EEEEECC
Confidence 866433221100 022356677788999999999999999 4779999
Q ss_pred CCeEee
Q psy4578 851 DNIMQK 856 (860)
Q Consensus 851 Dg~IrI 856 (860)
||.|++
T Consensus 355 dg~i~i 360 (408)
T 4a11_B 355 DCNILA 360 (408)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999886
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=2.5e-24 Score=238.96 Aligned_cols=217 Identities=20% Similarity=0.358 Sum_probs=181.8
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|.+.|++++|+| ++.+|++|+.||+|++||..++ .....+..|...|.+++|+|+|.. +++|+.|+.+.+|
T Consensus 59 ~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~-lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCA-IACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSE-EEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCE-EEEeeCCCCEEEE
Confidence 3457889999999998 7889999999999999999874 345566778899999999999985 8999999999888
Q ss_pred ccccc---------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--C
Q psy4578 696 EEEEE---------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--S 740 (860)
Q Consensus 696 ~~~~~---------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g 740 (860)
..... ++.|+.|++||+.++ ..+..+.+|...|.+++|+|+ +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCC
Confidence 65311 346889999999987 677888999999999999885 4
Q ss_pred CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820 (860)
Q Consensus 741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~ 820 (860)
. .+++|+.||.|++||++++.. +..+.+|...|++++|+|++.. |++|+.||+|++||++......
T Consensus 211 ~-~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~~~----------- 276 (354)
T 2pbi_B 211 N-TFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREVA----------- 276 (354)
T ss_dssp C-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----------
T ss_pred C-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEE-----------
Confidence 5 699999999999999999886 7888999999999999999984 8999999999999998743211
Q ss_pred cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
......+...+++++|+|+|. ++++|+.|+.|++
T Consensus 277 -~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~v 310 (354)
T 2pbi_B 277 -IYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINV 310 (354)
T ss_dssp -EECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred -EEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEE
Confidence 111223445789999999999 5779999999886
No 29
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=3.2e-25 Score=241.90 Aligned_cols=227 Identities=21% Similarity=0.344 Sum_probs=175.5
Q ss_pred eEEEEeeccchh---hhhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc
Q psy4578 601 EEVMYLENKTRA---QICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN 676 (860)
Q Consensus 601 ~~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s 676 (860)
...+.+|+.... .+..+.+|.+.|.+++|+++ ++.+|++|+.||+|++||+.++.. .....+.+|...|.+++|+
T Consensus 34 D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~ 112 (316)
T 3bg1_A 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWA 112 (316)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEEC
T ss_pred CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEEC
Confidence 334555555433 23445678899999999853 578999999999999999987532 3455677899999999999
Q ss_pred cC--CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC--------------
Q psy4578 677 PY--SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-------------- 740 (860)
Q Consensus 677 p~--g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g-------------- 740 (860)
|+ +. ++++|+.||+ |++||++..........+.+|...|.+++|+|++
T Consensus 113 p~~~g~-~lasgs~D~~---------------i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 113 PHDYGL-ILACGSSDGA---------------ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp CTTTCS-CEEEECSSSC---------------EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred CCCCCc-EEEEEcCCCC---------------EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 98 55 5999999999 9999998653212234567899999999999973
Q ss_pred ---CcEEEEeeCCCcEEEEeCCCCc--eeeEEeccCCCceEEEEEcCCC---CCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578 741 ---EYILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTE 812 (860)
Q Consensus 741 ---~~llasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~~l~fsp~g---~~lL~tgs~Dg~I~iWdl~~~~~~~~~~ 812 (860)
. +|++|+.||+|++||++... .....+.+|...|++++|+|++ ..+|++|+.||+|++||+.......
T Consensus 177 ~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~--- 252 (316)
T 3bg1_A 177 NYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT--- 252 (316)
T ss_dssp CCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC---
T ss_pred cccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc---
Confidence 4 59999999999999997552 2356788999999999999986 2369999999999999987632100
Q ss_pred cccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 813 ~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.......+|.+.|.+++|+|+|++ +++++.|+.|++
T Consensus 253 -------~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~l 288 (316)
T 3bg1_A 253 -------WSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTL 288 (316)
T ss_dssp -------CBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEE
T ss_pred -------hhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEE
Confidence 001123467889999999999995 779999999986
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-24 Score=238.46 Aligned_cols=210 Identities=22% Similarity=0.375 Sum_probs=164.7
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
|.+.|.+++|+| ++.+|++|+.||+|++||..... .......+.+|...|.+++|+|++++ |++|+.|++
T Consensus 57 h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~---- 130 (330)
T 2hes_X 57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKS---- 130 (330)
T ss_dssp CCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSC----
T ss_pred ccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCE----
Confidence 778899999999 78899999999999999986421 12345677899999999999999985 899999999
Q ss_pred cccccccCCCcEEEEeCCCC-CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-eeeEEeccCCC
Q psy4578 696 EEEEEENYDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-LKLHSFESHKD 773 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~-~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-~~~~~~~~h~~ 773 (860)
|++||++.. .....+..+.+|...|.+++|+|++. +|++|+.||+|++||.++.. ..+..+.+|.+
T Consensus 131 -----------v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~ 198 (330)
T 2hes_X 131 -----------VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198 (330)
T ss_dssp -----------EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred -----------EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCC
Confidence 999999543 22345667889999999999999998 59999999999999998763 23678899999
Q ss_pred ceEEEEEcCC--CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeC
Q psy4578 774 EIFQVQWSPH--NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 774 ~V~~l~fsp~--g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~ 850 (860)
.|.+++|+|+ +. .|++|+.|++|++||+........ ....+...+.+ |...|.+++|++++ ++++++.
T Consensus 199 ~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~ 269 (330)
T 2hes_X 199 TVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQ------QEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGA 269 (330)
T ss_dssp CEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSC------EEEEEEEECCSCCSSCEEEEEECTTS--CEEEEET
T ss_pred cEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCcccc------ceeEEeeecccccccceEEEEEcCCC--EEEEEeC
Confidence 9999999998 44 589999999999999876322110 00123334444 89999999999766 4779999
Q ss_pred CCeEee
Q psy4578 851 DNIMQK 856 (860)
Q Consensus 851 Dg~IrI 856 (860)
||.|+|
T Consensus 270 dg~v~i 275 (330)
T 2hes_X 270 DGVLAV 275 (330)
T ss_dssp TSCEEE
T ss_pred CCEEEE
Confidence 999986
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=2.5e-25 Score=253.91 Aligned_cols=205 Identities=18% Similarity=0.290 Sum_probs=167.2
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+...|++++|+|.++++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+|.+...|++|+.||+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~-------- 188 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT-------- 188 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC--------
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE--------
Confidence 4567999999998888999999999999999987543 3344567899999999999854446999999999
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
|++||+++... ........+...+.+++|+|++. ++++|+.||.|++||+++.. +..+.+|...|++++
T Consensus 189 -------v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 189 -------TRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVA 257 (435)
T ss_dssp -------EEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEE
T ss_pred -------EEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce--eEEEecccceEEeee
Confidence 99999976421 12222233455688999999998 59999999999999997644 567889999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|+|+++.++++|+.||.|++||+++...... .....+|...|++++|+|+|.+ +++++.||.|+|
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-----------~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~i 322 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKAS-----------FLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRV 322 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSC-----------CSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEE
T ss_pred ecCCCceEEEEecCcceeeEEecccccccce-----------EEEeeeccccccceeECCCCCe-eEEEcCCCEEEE
Confidence 9999988899999999999999988554322 1223478999999999999995 779999999986
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.93 E-value=4.9e-24 Score=231.01 Aligned_cols=227 Identities=26% Similarity=0.397 Sum_probs=182.5
Q ss_pred EEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 604 MYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 604 l~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
+.+|+....+. ..+..|...|.+++|+| ++++|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++..
T Consensus 47 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~- 121 (312)
T 4ery_A 47 IKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNL- 121 (312)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE-
T ss_pred EEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCE-
Confidence 44555544443 33446778899999998 7899999999999999999884 556778899999999999999984
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~ 762 (860)
+++|+.||. |++||++++ ..+..+..|...|.+++|+|++. ++++|+.||.|++||++++.
T Consensus 122 l~s~~~d~~---------------i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 122 IVSGSFDES---------------VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EEEEETTSC---------------EEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCc---------------EEEEECCCC---EEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Confidence 899999998 999999886 66778889999999999999998 49999999999999999987
Q ss_pred eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------------------c----
Q psy4578 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----------------------E---- 815 (860)
Q Consensus 763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-----------------------~---- 815 (860)
........+...+.+++|+|++++ +++++.||.|++||+++.......... .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred eeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence 633334456778999999999985 889999999999999875433221100 0
Q ss_pred ----CCCCccEEEecCccCceEEEEEccCCCeEEEEEe--CCCeEee
Q psy4578 816 ----DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQK 856 (860)
Q Consensus 816 ----~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs--~Dg~IrI 856 (860)
......+..+.+|...|.+++|+|+++. +++++ .|+.|++
T Consensus 262 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI-IASAALENDKTIKL 307 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECSSSSE-EEEEECTTTCCEEE
T ss_pred EEEECCCchhhhhhhccCCcEEEEeecCcCCc-eEEEEccCCccEEE
Confidence 0223456667789999999999999995 55665 6898886
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=5e-24 Score=234.98 Aligned_cols=203 Identities=23% Similarity=0.385 Sum_probs=171.1
Q ss_pred hhhhcccceeeeEe-----eccCCcEEEEEeCCCcEEEEEcCCCCc----ccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578 616 QLLDKLRLLIDVAW-----HLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATG 686 (860)
Q Consensus 616 ~l~~~~~~V~~v~~-----sp~~~~~lasgs~DG~I~IWd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g~~llasg 686 (860)
.+.+|.+.|++++| ++.++.+|++|+.||+|++||+..+.. ..+...+.+|...|.+++|+|++.+ +++|
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~ 94 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISS 94 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE-EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE-EEEE
Confidence 34567889999999 655788999999999999999976431 2345677899999999999999984 8999
Q ss_pred eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE
Q psy4578 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH 766 (860)
Q Consensus 687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~ 766 (860)
+.|++ |++||++++ ..+..+.+|...|.+++|+|++.+ +++|+.||+|++||+..... .
T Consensus 95 s~D~~---------------v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~--~ 153 (343)
T 2xzm_R 95 SWDKT---------------LRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECK--F 153 (343)
T ss_dssp ETTSE---------------EEEEETTSS---CEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEE--E
T ss_pred cCCCc---------------EEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCce--e
Confidence 99999 999999987 667788999999999999999995 89999999999999985432 2
Q ss_pred Ee---ccCCCceEEEEEcCCCC---------CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 767 SF---ESHKDEIFQVQWSPHNE---------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 767 ~~---~~h~~~V~~l~fsp~g~---------~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
.. .+|...|.+++|+|++. .++++|+.||.|++||... .....+.+|...|.+
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------------QIRYTFKAHESNVNH 218 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---------------EEEEEEECCSSCEEE
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---------------ceeEEEcCccccceE
Confidence 22 26889999999999872 3589999999999999432 345567789999999
Q ss_pred EEEccCCCeEEEEEeCCCeEee
Q psy4578 835 FSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 835 i~~spdg~~Llasgs~Dg~IrI 856 (860)
++|+|+|++ +++|+.|+.|++
T Consensus 219 ~~~s~~g~~-l~sgs~dg~v~i 239 (343)
T 2xzm_R 219 LSISPNGKY-IATGGKDKKLLI 239 (343)
T ss_dssp EEECTTSSE-EEEEETTCEEEE
T ss_pred EEECCCCCE-EEEEcCCCeEEE
Confidence 999999995 779999999986
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.93 E-value=8.1e-24 Score=229.27 Aligned_cols=201 Identities=25% Similarity=0.437 Sum_probs=174.6
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|.+.|++++|+| ++.++++|+.||.|++|+..++ .....+.+|...|.+++|+|+++. +++|+.||.
T Consensus 18 ~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~---- 88 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNL-LVSASDDKT---- 88 (312)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSE----
T ss_pred EEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCE-EEEECCCCE----
Confidence 3456778999999998 7889999999999999999874 446677899999999999999984 899999998
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 775 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V 775 (860)
|++||+.++ ..+..+.+|...|.+++|+|++. ++++|+.||.|++||++++.. +..+..|...|
T Consensus 89 -----------i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v 152 (312)
T 4ery_A 89 -----------LKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPV 152 (312)
T ss_dssp -----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCE
T ss_pred -----------EEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE-EEEecCCCCcE
Confidence 999999987 66778889999999999999998 499999999999999999886 78888999999
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.+++|+|++.. +++|+.||.|++||+++..... .....+...+..++|+|++++ +++++.|+.|+
T Consensus 153 ~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~ 217 (312)
T 4ery_A 153 SAVHFNRDGSL-IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLK 217 (312)
T ss_dssp EEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------EECCSSCCCEEEEEECTTSSE-EEEEETTTEEE
T ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEECCCCceee-------------EEeccCCCceEEEEECCCCCE-EEEEcCCCeEE
Confidence 99999999984 8999999999999998743221 122356678999999999995 67889999988
Q ss_pred e
Q psy4578 856 K 856 (860)
Q Consensus 856 I 856 (860)
+
T Consensus 218 i 218 (312)
T 4ery_A 218 L 218 (312)
T ss_dssp E
T ss_pred E
Confidence 6
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=4.1e-24 Score=251.56 Aligned_cols=224 Identities=24% Similarity=0.450 Sum_probs=190.5
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+.+|+.....+..+..|...|.+++|+| ++..+++|+.||.|++||... +.+..+.+|...|++++|+|++++
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~dg~~- 399 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT- 399 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC----CEEEEEECCSSCEEEEEECTTSSC-
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC----CEEEEecCCCCCeEEEEECCCCCE-
Confidence 35566666666666777888999999998 788999999999999999643 556778899999999999999996
Q ss_pred EEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578 683 LATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~ 736 (860)
+++|+.|+.+.+|+.... +..|+.|++||... +.+..+.+|...|++++|
T Consensus 400 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~ 475 (577)
T 2ymu_A 400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAF 475 (577)
T ss_dssp EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEE
T ss_pred EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEE
Confidence 899999999999875432 24578999999753 567788899999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~ 816 (860)
+|++. ++++|+.|+.|++||.. ++. +..+.+|...|++++|+|+|++ |++|+.||.|++||...
T Consensus 476 spd~~-~las~~~d~~i~iw~~~-~~~-~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~v~lwd~~~------------ 539 (577)
T 2ymu_A 476 SPDGQ-TIASASDDKTVKLWNRN-GQL-LQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG------------ 539 (577)
T ss_dssp CTTSC-EEEEEETTSEEEEEETT-SCE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTS------------
T ss_pred cCCCC-EEEEEeCCCEEEEEcCC-CCE-EEEEeCCCCCEEEEEEcCCCCE-EEEEECcCEEEEEeCCC------------
Confidence 99999 49999999999999964 444 7788999999999999999986 89999999999999532
Q ss_pred CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.++..+.+|.+.|++++|+|||++ +++++.|++|++
T Consensus 540 ---~~~~~~~~h~~~v~~~~fs~dg~~-l~s~~~D~~i~~ 575 (577)
T 2ymu_A 540 ---QLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKL 575 (577)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred ---CEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEE
Confidence 356677899999999999999996 668999999875
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-24 Score=233.43 Aligned_cols=205 Identities=20% Similarity=0.368 Sum_probs=163.8
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cC-CCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DA-HTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|.+++|+| + +|++|+.||+|++||+..+.. .....+ .+ |...|.+++|+|+++ ++++|+.|++
T Consensus 10 ~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~--- 81 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDST--- 81 (330)
T ss_dssp EECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSC---
T ss_pred eccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCc---
Confidence 446778999999997 3 999999999999999986422 223333 34 999999999999998 5899999999
Q ss_pred ecccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc---eeeEE
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK---LKLHS 767 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~---~~~~~ 767 (860)
|++||+.... ....+..+.+|...|.+++|+|++.+ |++|+.|++|++||++... ..+..
T Consensus 82 ------------v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 82 ------------VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp ------------EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred ------------EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 9999986431 12345678899999999999999995 9999999999999995332 23667
Q ss_pred eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC--CCeEE
Q psy4578 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVI 845 (860)
Q Consensus 768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd--g~~Ll 845 (860)
+.+|...|.+++|+|++. +|++|+.||+|++||..... ..++..+.+|.+.|.+++|+|+ +. .+
T Consensus 149 ~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l 214 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD------------WECVAVLNGHEGTVWSSDFDKTEGVF-RL 214 (330)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCSSSSC-EE
T ss_pred eccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC------------eeEEEEccCCCCcEEEEEecCCCCee-EE
Confidence 889999999999999998 48999999999999986521 2456778899999999999998 45 68
Q ss_pred EEEeCCCeEee
Q psy4578 846 CSVSEDNIMQK 856 (860)
Q Consensus 846 asgs~Dg~IrI 856 (860)
++|+.|++|++
T Consensus 215 ~s~s~D~~v~i 225 (330)
T 2hes_X 215 CSGSDDSTVRV 225 (330)
T ss_dssp EEEETTSCEEE
T ss_pred EEEeCCCeEEE
Confidence 89999999986
No 37
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=4.4e-24 Score=243.25 Aligned_cols=214 Identities=21% Similarity=0.389 Sum_probs=180.9
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-------CcccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 687 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-------~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs 687 (860)
.....|.+.|++++|+|+++.++++|+.||.|++|++.+. ........+.+|...|++++|+|++..++++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 4456788899999999966889999999999999999752 113556777899999999999999886699999
Q ss_pred CCCceeeecccccccCCCcEEEEeCCCCCCC----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-
Q psy4578 688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK- 762 (860)
Q Consensus 688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~- 762 (860)
.||. |++||+..+... .....+.+|...|.+++|+|++..++++|+.||.|++||+++..
T Consensus 202 ~dg~---------------i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 202 DDHT---------------ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp TTSC---------------EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred CCCe---------------EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 9998 999999874221 12456778999999999999666689999999999999999873
Q ss_pred -eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578 763 -LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 841 (860)
Q Consensus 763 -~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg 841 (860)
..+..+..|...|++++|+|++++++++|+.||.|++||+++.. .++..+.+|.+.|++++|+|++
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCC
Confidence 33667788999999999999999889999999999999998732 2355666899999999999999
Q ss_pred CeEEEEEeCCCeEee
Q psy4578 842 PWVICSVSEDNIMQK 856 (860)
Q Consensus 842 ~~Llasgs~Dg~IrI 856 (860)
++++++++.|+.|+|
T Consensus 334 ~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 334 ETILASSGTDRRLHV 348 (430)
T ss_dssp TTEEEEEETTSCCEE
T ss_pred CCEEEEEeCCCcEEE
Confidence 888999999999886
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.3e-24 Score=241.62 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=179.9
Q ss_pred ccceeeeeeecceeecccceeEEEEeeccch---hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc
Q psy4578 581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTR---AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS 657 (860)
Q Consensus 581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~---~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~ 657 (860)
.+....+.++.|..++. +.+|+... .....+..|.+.|.+++|+| ++++|++|+.||.|++||+.++...
T Consensus 18 ~~s~~g~~l~~~~~d~~------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQ------VELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp EECSSSSEEECCCSSSC------BCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CC
T ss_pred EECCCCCEEEEecCCCE------EEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCce
Confidence 34444445555544443 33344433 33444557788999999998 6889999999999999999986533
Q ss_pred cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEE
Q psy4578 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSF 736 (860)
Q Consensus 658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~ 736 (860)
.....+.+|...|++++|+|++.. +++|+.|+. |++||++++........+.+ |...|.+++|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~---------------i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARV---------------ISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSC-CEEEESSSC---------------EEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred eeeeEecccCCceEEEEECCCCCE-EEEEecCCe---------------EEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 456677889999999999999985 899999998 99999998754345667777 9999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i 799 (860)
+|++. ++++|+.||.|++||++... ..+..+ +|...|++++|+|+|++ |++|+.||.|++
T Consensus 155 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~i 231 (377)
T 3dwl_C 155 HPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTI 231 (377)
T ss_dssp CTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-
T ss_pred cCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEE
Confidence 99998 59999999999999986321 124445 89999999999999986 899999999999
Q ss_pred EECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578 800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF 858 (860)
Q Consensus 800 Wdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f 858 (860)
||+.+.... ...+..+.+|...|.+++|+|+|+ ++++|++|+.+.+..
T Consensus 232 wd~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 232 AYPSAPEQP----------PRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPILLQG 279 (377)
T ss_dssp CEECSTTSC----------EEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEEEECC
T ss_pred EECCCCCCc----------ceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEEEEEe
Confidence 999985431 112445567999999999999998 578999999987754
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-24 Score=250.89 Aligned_cols=220 Identities=12% Similarity=0.168 Sum_probs=174.5
Q ss_pred eEEEEeeccchhhhh----h-hhhcccceeeeEeecc-----CCcEEEEEeCCCcEEEEEcCCCCcc--------cCeee
Q psy4578 601 EEVMYLENKTRAQIC----Q-LLDKLRLLIDVAWHLL-----HESLFGSVADDQKLMIWDTRSHNVS--------KPSHT 662 (860)
Q Consensus 601 ~~il~l~n~~~~~l~----~-l~~~~~~V~~v~~sp~-----~~~~lasgs~DG~I~IWd~~~~~~~--------~~~~~ 662 (860)
...+.+|+....+.. . +..+.+.|.+++|+|. ++.+||+|+.||+|++||+.++... .+...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 344566666554431 1 2344578999999994 2579999999999999999865321 23346
Q ss_pred ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE--EEcCCC
Q psy4578 663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL--SFNPYS 740 (860)
Q Consensus 663 ~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl--~~sp~g 740 (860)
+.+|...|++++|++++ .|++|+.||+ |++||++++. .+...+.+|...|+++ +|+|++
T Consensus 262 l~~h~~~v~sv~~s~~~--~lasgs~Dgt---------------V~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 262 LSLADSLITTFDFLSPT--TVVCGFKNGF---------------VAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp ECCTTTCEEEEEESSSS--EEEEEETTSE---------------EEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTS
T ss_pred EEcCCCCEEEEEecCCC--eEEEEeCCCE---------------EEEEECCCCC--CceEEeecccccEEEEEEEcCCCC
Confidence 77899999999999854 4899999999 9999998753 3445678999999999 578887
Q ss_pred CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
..+||||+.||+|+|||++++.. ...+.+|.. .|.+++|+|++.. +++++.|++|++||+++..
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~------------ 388 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAF------------ 388 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTT------------
T ss_pred CeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccc------------
Confidence 34799999999999999998775 455556653 5889999999985 8899999999999998733
Q ss_pred CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++..+.+|.+.|++++|+|+|++ +++|+.|++|++
T Consensus 389 --~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~l 423 (524)
T 2j04_B 389 --AVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLII 423 (524)
T ss_dssp --CCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEEC
T ss_pred --cceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEE
Confidence 23455689999999999999995 779999999986
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=5.8e-24 Score=233.19 Aligned_cols=247 Identities=18% Similarity=0.252 Sum_probs=192.7
Q ss_pred eEEEEeeccchhhhh--hhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-
Q psy4578 601 EEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF- 675 (860)
Q Consensus 601 ~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~- 675 (860)
...+.+|+....+.. ...+|...|.+++|+|++ +.++++|+.||.|++||+.++. ..+..+.+|...|.++.|
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGI 120 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeec
Confidence 345566666555443 334677899999999953 7899999999999999998753 256778899999999965
Q ss_pred -----ccCCCeEEEEEeCCCceeeeccccc------------------------------------ccCCCcEEEEeCCC
Q psy4578 676 -----NPYSEYILATGSADKTQFEVEEEEE------------------------------------ENYDQKLMIWDTRS 714 (860)
Q Consensus 676 -----sp~g~~llasgs~Dg~i~~~~~~~~------------------------------------~~~dg~I~iwDl~~ 714 (860)
+|+++ .+++|+.||.+.+|+.... +..+|.|++||+++
T Consensus 121 ~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 121 GGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp SGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred cccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 67787 4899999999999976542 12368899999988
Q ss_pred CCCCCCeeeecCCCCCeEEEEEcC---CCCcEEEEeeCCCcEEEEeCCCCceeeEE-----eccCCCceEEEEEcCCCCC
Q psy4578 715 HNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALWDLRNLKLKLHS-----FESHKDEIFQVQWSPHNET 786 (860)
Q Consensus 715 ~~~~~~~~~~~~h~~~I~sl~~sp---~g~~llasgs~Dg~I~IWDl~~~~~~~~~-----~~~h~~~V~~l~fsp~g~~ 786 (860)
+. . .....|...|.+++|+| ++.. +++|+.||.|++||+++... ... +.+|...|++++|+|+++.
T Consensus 200 ~~---~-~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (357)
T 3i2n_A 200 MA---L-RWETNIKNGVCSLEFDRKDISMNK-LVATSLEGKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRE 273 (357)
T ss_dssp TE---E-EEEEECSSCEEEEEESCSSSSCCE-EEEEESTTEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEE
T ss_pred Cc---e-eeecCCCCceEEEEcCCCCCCCCE-EEEECCCCeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCc
Confidence 63 2 34467889999999999 7884 89999999999999987654 333 3489999999999999986
Q ss_pred EEEEEECCCcEEEEECCCCCccccccccc-----CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 787 ILASSGTDRRLHVWDLSKIGEEQSTEDAE-----DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 787 lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-----~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++++|+.||.|++||++............ .+....+....+|.+.|++++|+|+|++++++++.|+.|+|
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 69999999999999998755432221111 11224677788999999999999999987669999999986
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=6.4e-24 Score=230.39 Aligned_cols=220 Identities=20% Similarity=0.338 Sum_probs=174.0
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEcc--CCCeEEEEEeCCCceee
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFE 694 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp--~g~~llasgs~Dg~i~~ 694 (860)
.+|.+.|++++|+| ++.+|++|+.||.|++||+.++.. ......+.+|...|++++|+| ++. ++++|+.||.
T Consensus 8 ~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~--- 82 (351)
T 3f3f_A 8 SGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKT--- 82 (351)
T ss_dssp CCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSC---
T ss_pred cccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCe---
Confidence 46778999999998 788999999999999999986432 134566788999999999999 466 5899999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCC------CCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce---
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVS------KPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL--- 763 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~------~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~--- 763 (860)
|++||+.++... ..+..+.+|...|.+++|+|+ +. ++++|+.||.|++||+++...
T Consensus 83 ------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 83 ------------VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp ------------EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTC
T ss_pred ------------EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcc
Confidence 999999875321 236677889999999999999 87 599999999999999875431
Q ss_pred --------------------------------------------------------eeEEeccCCCceEEEEEcCCCC--
Q psy4578 764 --------------------------------------------------------KLHSFESHKDEIFQVQWSPHNE-- 785 (860)
Q Consensus 764 --------------------------------------------------------~~~~~~~h~~~V~~l~fsp~g~-- 785 (860)
.+..+.+|...|++++|+|++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 1344567899999999999982
Q ss_pred -CEEEEEECCCcEEEEECCCCCcccccccc--------------------------------cCCCCccEEEecCccCce
Q psy4578 786 -TILASSGTDRRLHVWDLSKIGEEQSTEDA--------------------------------EDGPPELLFIHGGHTAKI 832 (860)
Q Consensus 786 -~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~--------------------------------~~~~~~~i~~~~~h~~~I 832 (860)
.+|++|+.||.|++||++........... .......+..+.+|.+.|
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 309 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence 36999999999999999874322111100 001125667778999999
Q ss_pred EEEEEccCCCeEEEEEeCCCeEee
Q psy4578 833 SDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 833 ~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++++|+|++++ +++|+.||.|+|
T Consensus 310 ~~~~~s~~~~~-l~s~~~dg~v~i 332 (351)
T 3f3f_A 310 WSVSWNLTGTI-LSSAGDDGKVRL 332 (351)
T ss_dssp EEEEECSSSCC-EEEEETTSCEEE
T ss_pred EEEEEcCCCCE-EEEecCCCcEEE
Confidence 99999999994 779999999886
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.2e-24 Score=240.96 Aligned_cols=221 Identities=18% Similarity=0.353 Sum_probs=182.8
Q ss_pred EEEeeccch-----hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC------cccCeeeccCCCCCee
Q psy4578 603 VMYLENKTR-----AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN------VSKPSHTVDAHTAEVN 671 (860)
Q Consensus 603 il~l~n~~~-----~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~------~~~~~~~~~~h~~~V~ 671 (860)
.+.+|+... ..+..+..|.+.|.+++|+|+++.++++|+.||.|++||+.++. ..........|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 355565554 24555667888999999999658999999999999999998864 2222334567899999
Q ss_pred EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC------CCCeEEEEEcCCCCcEEE
Q psy4578 672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h------~~~I~sl~~sp~g~~lla 745 (860)
+++|+|++..++++|+.||. |++||++++ ..+..+..| ...|.+++|+|++..+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~---------------v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNF---------------ASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp EEEECSSCTTEEEEESSSSC---------------EEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred EEEeCCCCCcEEEEEcCCCC---------------EEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 99999996557999999998 999999886 455555555 789999999999876799
Q ss_pred EeeCCC---cEEEEeCCCCceeeEEec-cCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578 746 TGSADK---TVALWDLRNLKLKLHSFE-SHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820 (860)
Q Consensus 746 sgs~Dg---~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~ 820 (860)
+|+.|+ .|++||+++.......+. +|...|.+++|+| ++.. |++|+.||.|++||+++. .
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~wd~~~~--------------~ 296 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLLWNPESA--------------E 296 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEEECSSSC--------------C
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEEeeCCCC--------------c
Confidence 999999 999999998755477777 8999999999999 7764 899999999999999873 3
Q ss_pred cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+..+.+|...|++++|+|+++.++++++.|+.|++
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence 456677899999999999999557899999999986
No 43
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=3.2e-23 Score=223.66 Aligned_cols=267 Identities=21% Similarity=0.397 Sum_probs=198.1
Q ss_pred hcccc--cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEE
Q psy4578 565 ELLPV--FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGS 639 (860)
Q Consensus 565 ~lL~~--f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~las 639 (860)
+.+|. ++.+.+|...+|++++.--+..+.+... .....+.+|+...++....+ +|...|++++|+| +++++++
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~s 84 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAV 84 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEE
Confidence 44444 5666677666777543222222222211 22345777887776655543 4567799999998 7899999
Q ss_pred EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-------------------
Q psy4578 640 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------------- 700 (860)
Q Consensus 640 gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------------- 700 (860)
|+.||+|++||++++ +.+..+.+|...+.++.+. +. ++++|+.++.+..|.....
T Consensus 85 gs~Dg~v~iw~~~~~---~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EECCCcEEEeecCCc---eeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999984 5567778888888776665 44 5888988888777654432
Q ss_pred ---------ccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEE--EEeeCCCcEEEEeCCCCceeeEEe
Q psy4578 701 ---------ENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYIL--ATGSADKTVALWDLRNLKLKLHSF 768 (860)
Q Consensus 701 ---------~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~ll--asgs~Dg~I~IWDl~~~~~~~~~~ 768 (860)
+..|+.|++||+++++. .........|.+.|.+++++|++..++ ++|+.++.|++||.+.... . ..
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-~-~~ 236 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-L-SA 236 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-E-EE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-c-cc
Confidence 24578899999987642 234455677889999999999888655 4667889999999998775 3 33
Q ss_pred ccCCCceEEEEEcCCCCCEEEEE-ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578 769 ESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847 (860)
Q Consensus 769 ~~h~~~V~~l~fsp~g~~lL~tg-s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas 847 (860)
..+...+..+.|+|++..+++++ +.||.|++||+++ ..++..+.+|.+.|++++|+|+|++ ++|
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--------------~~~~~~l~gH~~~V~~l~~spdg~~-l~S 301 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------------MAKVAELKGHTSRVLSLTMSPDGAT-VAS 301 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSC-EEE
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCE-EEE
Confidence 45778899999999998744333 3799999999987 3456778899999999999999995 779
Q ss_pred EeCCCeEee
Q psy4578 848 VSEDNIMQK 856 (860)
Q Consensus 848 gs~Dg~IrI 856 (860)
||.||+|+|
T Consensus 302 ~s~D~~v~i 310 (318)
T 4ggc_A 302 AAADETLRL 310 (318)
T ss_dssp EETTTEEEE
T ss_pred EecCCeEEE
Confidence 999999986
No 44
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=2e-24 Score=235.57 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=167.8
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceeee
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFEV 695 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~~ 695 (860)
.+|.+.|++++|+| ++++|++|+.||+|++||+.++.. ..+..+.+|.+.|.+++|+++ +. +|++|+.|++
T Consensus 10 ~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~---- 82 (316)
T 3bg1_A 10 TSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRK---- 82 (316)
T ss_dssp ----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSC----
T ss_pred ccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCE----
Confidence 46788999999998 789999999999999999987421 245678899999999999863 66 5999999999
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce--eeEEeccC
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL--KLHSFESH 771 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~h 771 (860)
|++||++++.. .....+.+|...|.+++|+|+ +. +|++|+.||+|++||++.... ....+.+|
T Consensus 83 -----------v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 83 -----------VIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp -----------EEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred -----------EEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 99999987532 355677889999999999998 55 599999999999999987632 13456689
Q ss_pred CCceEEEEEcCCC-----------------CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 772 KDEIFQVQWSPHN-----------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 772 ~~~V~~l~fsp~g-----------------~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
...|.+++|+|++ . +|++|+.|++|++||++.... ...+..+.+|.+.|.+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQ-----------WKEEQKLEAHSDWVRD 217 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSC-----------EEEEECCBCCSSCEEE
T ss_pred cCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCc-----------cceeeecccCCCceEE
Confidence 9999999999973 4 489999999999999865211 1245567789999999
Q ss_pred EEEccCC---CeEEEEEeCCCeEee
Q psy4578 835 FSWNPNE---PWVICSVSEDNIMQK 856 (860)
Q Consensus 835 i~~spdg---~~Llasgs~Dg~IrI 856 (860)
++|+|++ ..++++++.|+.|+|
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEE
T ss_pred EEecCCCCCCCceEEEEcCCCeEEE
Confidence 9999987 236889999999986
No 45
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=2e-23 Score=235.02 Aligned_cols=209 Identities=17% Similarity=0.365 Sum_probs=175.8
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc----cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 690 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~----~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg 690 (860)
..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++... ..+..+.+|...|++++|+|++..++++|+.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 3355688999999999877899999999999999999875321 456778899999999999999865799999999
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 768 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~ 768 (860)
. |++||+.++ ..+..+ .+|...|.+++|+|++.. +++|+.||.|++||++++.. +..+
T Consensus 155 ~---------------i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-~~~~ 214 (402)
T 2aq5_A 155 V---------------ILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGAL-ICTSCRDKRVRVIEPRKGTV-VAEK 214 (402)
T ss_dssp C---------------EEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEE-EEEE
T ss_pred E---------------EEEEECCCC---CccEEEecCCCCCceEEEEECCCCCE-EEEEecCCcEEEEeCCCCce-eeee
Confidence 8 999999986 566677 789999999999999995 89999999999999999886 6666
Q ss_pred -ccCCCc-eEEEEEcCCCCCEEEEE---ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578 769 -ESHKDE-IFQVQWSPHNETILASS---GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 843 (860)
Q Consensus 769 -~~h~~~-V~~l~fsp~g~~lL~tg---s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~ 843 (860)
.+|.+. +.+++|+|++. ++++| +.|+.|++||+++.... .......|...|.+++|+|++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~ 281 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEP------------LSLQELDTSSGVLLPFFDPDTNI 281 (402)
T ss_dssp ECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSC------------SEEEECCCCSSCEEEEEETTTTE
T ss_pred ccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCC------------ceEEeccCCCceeEEEEcCCCCE
Confidence 678776 89999999997 47788 68999999999875431 11222356778999999999998
Q ss_pred EEEEEeCCCeEee
Q psy4578 844 VICSVSEDNIMQK 856 (860)
Q Consensus 844 Llasgs~Dg~IrI 856 (860)
++++|+.|+.|++
T Consensus 282 l~~~g~~dg~i~i 294 (402)
T 2aq5_A 282 VYLCGKGDSSIRY 294 (402)
T ss_dssp EEEEETTCSCEEE
T ss_pred EEEEEcCCCeEEE
Confidence 7788888998886
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-24 Score=243.18 Aligned_cols=240 Identities=16% Similarity=0.247 Sum_probs=184.6
Q ss_pred eccchhhhhhh-hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC---CCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 607 ENKTRAQICQL-LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS---HNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 607 ~n~~~~~l~~l-~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
|+.....+..+ .+|.+.|++++|+|.++.+|++|+.||+|++||+.+ +........+ +|...|++++|+|++. .
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~ 125 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD-A 125 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS-E
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC-E
Confidence 45444444455 456689999999985688999999999999999976 3322223333 5899999999999888 4
Q ss_pred EEEEeCCCceeeecccc---------------------------------------c-----ccCCCcEEEEeCCCCCCC
Q psy4578 683 LATGSADKTQFEVEEEE---------------------------------------E-----ENYDQKLMIWDTRSHNVS 718 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~---------------------------------------~-----~~~dg~I~iwDl~~~~~~ 718 (860)
+++|+.||++.+|+... . +..++.|++||++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 202 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL--- 202 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC---
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---
Confidence 89999999999997731 0 245789999999987
Q ss_pred CCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEEEEcC----CCCCEEEEE
Q psy4578 719 KPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSP----HNETILASS 791 (860)
Q Consensus 719 ~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp----~g~~lL~tg 791 (860)
..+..+.+ |...|++++|+|++. ++++|+.||.|++||++++.. +..+. .|...|.+++|+| ++. ++++|
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~ 279 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSV-IVVGG 279 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEE-EEEEE
T ss_pred eeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCcc-EEEEE
Confidence 66777777 889999999999998 499999999999999999776 66665 7888999996665 565 58999
Q ss_pred ECCCcEEEEECCCCCcccccccccCCCCccEE----------EecC--ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF----------IHGG--HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 792 s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~----------~~~~--h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+.||.|++||++++.................. .+.+ |...|++++|+ +++ ++++|+.|+.|++
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~ 354 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVM 354 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEE
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEE
Confidence 99999999999987655443322211111111 1223 88899999999 666 6889999999986
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.6e-24 Score=235.81 Aligned_cols=215 Identities=14% Similarity=0.223 Sum_probs=167.1
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+.++|++++|+| ++.+|++|+.||.|++||+.++. ......+.+|...|++++|+|++++ +++|+.||+
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~d~~-------- 78 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNR-IVTCSQDRN-------- 78 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCC-EEEEETTSS--------
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCE-EEEEeCCCe--------
Confidence 346899999999 78899999999999999998741 1456677899999999999999985 899999998
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce--eeEEecc-CCCceE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFES-HKDEIF 776 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~-h~~~V~ 776 (860)
|++||+.++........+.+|...|.+++|+|++.. +++|+.||.|++||+++... ....+.. |...|+
T Consensus 79 -------v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 79 -------AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp -------EEEC------CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred -------EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 999999987533567778889999999999999995 89999999999999998763 2566676 999999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC----CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~----~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
+++|+|++.. |++|+.||.|++||+.............. ....++..+ +|.+.|++++|+|+|++ +++++.|+
T Consensus 151 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~ 227 (377)
T 3dwl_C 151 SLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDS 227 (377)
T ss_dssp EEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTT
T ss_pred EEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCC
Confidence 9999999984 89999999999999975443221111111 112345555 89999999999999995 77999999
Q ss_pred eEee
Q psy4578 853 IMQK 856 (860)
Q Consensus 853 ~IrI 856 (860)
.|++
T Consensus 228 ~i~i 231 (377)
T 3dwl_C 228 SVTI 231 (377)
T ss_dssp EEC-
T ss_pred cEEE
Confidence 9886
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.91 E-value=2e-23 Score=252.63 Aligned_cols=227 Identities=21% Similarity=0.305 Sum_probs=177.6
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+.+|...|.+++|+| ++.++++|+.||+|++||+.++ .....+.+|...|.+++|+|+++. +++|+.|++|.+|
T Consensus 425 ~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iw 499 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLW 499 (694)
T ss_dssp EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEE
T ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEE
Confidence 4567888999999998 7899999999999999999884 556778899999999999999985 8999999999999
Q ss_pred ccccc--------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578 696 EEEEE--------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 743 (860)
Q Consensus 696 ~~~~~--------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l 743 (860)
+.... ++.|+.|++||+++. .....+.+|.+.|++++|+|++. +
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~ 575 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-L 575 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-E
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-E
Confidence 75321 235789999999876 66778899999999999999999 5
Q ss_pred EEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC----
Q psy4578 744 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP---- 819 (860)
Q Consensus 744 lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~---- 819 (860)
+++|+.||+|++||++++.. +..+. +...|.+++|+|++.. +++ +.|+.|++||+.+...............
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~~~-l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKK-LYSLE-ANSVIHALCFSPNRYW-LCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEETTSBCEEEETTTTEE-EECCB-CSSCEEEEEECSSSSE-EEE-EETTEEEEEETTTTEEEEEECCCCC-------
T ss_pred EEEEeCCCeEEEEECCCCce-EEEec-CCCcEEEEEEcCCCcE-EEE-EcCCCEEEEECCCCCChhhhcccccccccccc
Confidence 99999999999999999876 55554 4568999999999863 544 4577799999998655433221110000
Q ss_pred -ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 820 -ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 820 -~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
........+...+++++|+|+|++ +++|+.||.|+|
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~~-l~sgs~Dg~i~i 688 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGST-LFSGYTDGVIRV 688 (694)
T ss_dssp ---------CCCCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred ccccccCCceeEEeeeEEEcCCCCE-EEEEcCCCeEEE
Confidence 000011123345889999999995 779999999986
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.91 E-value=2.6e-23 Score=234.37 Aligned_cols=215 Identities=17% Similarity=0.231 Sum_probs=174.0
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+++|+............+..+....|++ ++.+|++|+.||.|++||+.++ .....+.+|.+.|++++|+|+++ +
T Consensus 79 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~ 153 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGE-A 153 (420)
T ss_dssp EEEEEECCSEETTTTSCSCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTTSS-E
T ss_pred cEEEEEecccceeeEEecCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCc---ceeeecccccCccEEEEECCCCC-E
Confidence 46667766666665555554455556676 8899999999999999999874 45666789999999999999998 5
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~ 762 (860)
+++|+.||. |++||+.++ ..+..+.+|...|.+++|+|++.. +++|+.||.|++||++++.
T Consensus 154 l~s~s~d~~---------------i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 154 LISSSQDMQ---------------LKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp EEEEETTSE---------------EEEEETTTC---CCCEEEECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTE
T ss_pred EEEEeCCCe---------------EEEEeCCCC---cCceEEcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCc
Confidence 899999998 999999987 566778899999999999999985 8899999999999999887
Q ss_pred eeeEEecc---CCCceEE---------------------EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 763 LKLHSFES---HKDEIFQ---------------------VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 763 ~~~~~~~~---h~~~V~~---------------------l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
. +..+.. |...+.+ ++|+|+|+. +++|+.||.|++||+++...
T Consensus 215 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~----------- 281 (420)
T 3vl1_A 215 T-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKEQ----------- 281 (420)
T ss_dssp E-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCCE-----------
T ss_pred e-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCce-----------
Confidence 6 666654 3344444 455788874 89999999999999987432
Q ss_pred CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
......+|...|++++|+|++..++++|+.||.|++
T Consensus 282 --~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 282 --TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp --EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred --eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 223334688999999999999966889999999986
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.91 E-value=3.7e-23 Score=250.33 Aligned_cols=204 Identities=20% Similarity=0.355 Sum_probs=174.1
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|++++|+|+++++|+||+.||+|++|++.+... ......+.+|...|++++|+|+++. +++|+.||+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~-l~sgs~Dg~--- 453 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF-ALSGSWDGE--- 453 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE-EEEEeCCCc---
Confidence 3468889999999997789999999999999999976432 2234567899999999999999985 899999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE---eccC
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS---FESH 771 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~---~~~h 771 (860)
|++||+.++ .....+.+|...|.+++|+|++.+ +++|+.|++|++||...... ... ..+|
T Consensus 454 ------------v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h 516 (694)
T 3dm0_A 454 ------------LRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECK-YTISEGGEGH 516 (694)
T ss_dssp ------------EEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEE-EEECSSTTSC
T ss_pred ------------EEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcc-eeeccCCCCC
Confidence 999999886 567788899999999999999996 89999999999999876543 222 2468
Q ss_pred CCceEEEEEcCCCC-CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 772 KDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 772 ~~~V~~l~fsp~g~-~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
...|.+++|+|++. ..+++|+.||+|++||+++. .+...+.+|.+.|++++|+|+|+ ++++|+.
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~--------------~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~ 581 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC--------------KLRSTLAGHTGYVSTVAVSPDGS-LCASGGK 581 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeC
Confidence 88999999999873 36899999999999999873 34566788999999999999999 5889999
Q ss_pred CCeEee
Q psy4578 851 DNIMQK 856 (860)
Q Consensus 851 Dg~IrI 856 (860)
|+.|++
T Consensus 582 Dg~i~i 587 (694)
T 3dm0_A 582 DGVVLL 587 (694)
T ss_dssp TSBCEE
T ss_pred CCeEEE
Confidence 999986
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-23 Score=233.49 Aligned_cols=223 Identities=21% Similarity=0.373 Sum_probs=180.2
Q ss_pred EEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccC
Q psy4578 603 VMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 603 il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
.+.+|+..... ......|...|.+++|+| ++.+|++|+.||.|++||+.+... ......+.+|...|++++|+|+
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred eEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence 34555554443 455567888999999998 788999999999999999987322 2356778899999999999998
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~ 752 (860)
+..++++|+.||. |++||+.+.. .........+|...|.+++|+|++..++++|+.||.
T Consensus 125 ~~~~l~s~~~dg~---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 125 QDNVLASGGNNGE---------------IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp STTBEEEECSSSC---------------EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred CCCEEEEEcCCCe---------------EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 4446999999998 9999998864 222333456799999999999996557999999999
Q ss_pred EEEEeCCCCceeeEEeccC------CCceEEEEEcCCCCCEEEEEECCC---cEEEEECCCCCcccccccccCCCCccEE
Q psy4578 753 VALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLF 823 (860)
Q Consensus 753 I~IWDl~~~~~~~~~~~~h------~~~V~~l~fsp~g~~lL~tgs~Dg---~I~iWdl~~~~~~~~~~~~~~~~~~~i~ 823 (860)
|++||++++.. +..+..| ...|.+++|+|++..++++++.|+ .|++||+++... ++.
T Consensus 190 v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-------------~~~ 255 (416)
T 2pm9_A 190 ASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-------------PLQ 255 (416)
T ss_dssp EEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-------------CSB
T ss_pred EEEEECCCCCc-ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-------------CcE
Confidence 99999999876 6666665 789999999999877799999998 999999987432 223
Q ss_pred Eec-CccCceEEEEEcc-CCCeEEEEEeCCCeEee
Q psy4578 824 IHG-GHTAKISDFSWNP-NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 824 ~~~-~h~~~I~~i~~sp-dg~~Llasgs~Dg~IrI 856 (860)
.+. +|...|++++|+| ++. ++++++.|+.|++
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLL 289 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEE
T ss_pred EeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEE
Confidence 344 7899999999999 777 5779999999886
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=1.4e-23 Score=239.42 Aligned_cols=182 Identities=18% Similarity=0.274 Sum_probs=146.8
Q ss_pred EEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578 604 MYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 680 (860)
Q Consensus 604 l~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 680 (860)
+.+|+..... .....+|.+.|++++|+|.++.+|++|+.||+|++||++++.. ........+...+.+++|+|++.
T Consensus 144 i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 222 (435)
T 4e54_B 144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR 222 (435)
T ss_dssp EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT
T ss_pred EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC
Confidence 5556554332 3445678899999999997889999999999999999976321 22222233455688999999998
Q ss_pred eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578 681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760 (860)
Q Consensus 681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~ 760 (860)
++++|+.||. |++||++. +.+..+.+|...|++++|+|++..++++|+.||.|++||+++
T Consensus 223 -~l~~g~~dg~---------------i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 223 -MVVTGDNVGN---------------VILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp -EEEEECSSSB---------------EEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred -EEEEEeCCCc---------------EeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 5899999998 99999975 445677899999999999999988899999999999999987
Q ss_pred Ccee--eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578 761 LKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 761 ~~~~--~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
.... .....+|...|++++|+|+|.+ |++|+.||.|++||+.++..
T Consensus 283 ~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 283 VRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp CCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSSSSS
T ss_pred ccccceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCCCcc
Confidence 6541 2334579999999999999985 89999999999999987543
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-22 Score=221.55 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=185.8
Q ss_pred EEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+....+... +..|.+.|.+++|+| ++.+|++++.||.|++||+.++ ..+..+. +...+.+++|+|++.+
T Consensus 55 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~ 129 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG---QCVATWK-SPVPVKRVEFSPCGNY 129 (369)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---cEEEEee-cCCCeEEEEEccCCCE
Confidence 35556655444443 445778999999998 7889999999999999999885 3344444 7889999999999995
Q ss_pred EEEEEeCC-----Cceeeeccccc----------------------------------------ccCCCcEEEEeCCCCC
Q psy4578 682 ILATGSAD-----KTQFEVEEEEE----------------------------------------ENYDQKLMIWDTRSHN 716 (860)
Q Consensus 682 llasgs~D-----g~i~~~~~~~~----------------------------------------~~~dg~I~iwDl~~~~ 716 (860)
+++++.+ |.+.+|+.... +..+|.|++||+++.
T Consensus 130 -l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 207 (369)
T 3zwl_B 130 -FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN- 207 (369)
T ss_dssp -EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-
T ss_pred -EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-
Confidence 7778777 88888876532 235788999999873
Q ss_pred CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC-
Q psy4578 717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR- 795 (860)
Q Consensus 717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg- 795 (860)
...+..+..|...|.+++|+|++.+ |++|+.||.|++||++++.. +..+. +...+.+++|+|++++ +++++.++
T Consensus 208 -~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~ 282 (369)
T 3zwl_B 208 -YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTLQV-LKKYE-TDCPLNTAVITPLKEF-IILGGGQEA 282 (369)
T ss_dssp -TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECCC-
T ss_pred -cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCCce-eeeec-CCCCceeEEecCCCce-EEEeecCCC
Confidence 1567778889999999999999985 89999999999999999886 55555 7889999999999986 77888777
Q ss_pred -------------cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 796 -------------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 796 -------------~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+++||..+. ..+..+.+|.+.|++++|+|+|+ ++++++.||.|++
T Consensus 283 ~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~i 341 (369)
T 3zwl_B 283 KDVTTTSANEGKFEARFYHKIFE--------------EEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRL 341 (369)
T ss_dssp ------------CEEEEEETTTC--------------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred ceEEEEecCCCcceeEEEecCCC--------------cchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEE
Confidence 8999998773 44566778999999999999999 5779999999986
No 54
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.91 E-value=1e-22 Score=239.53 Aligned_cols=224 Identities=24% Similarity=0.450 Sum_probs=188.4
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+.+|+.....+..+.+|.+.|.+++|+| ++..+++++.||.|++||... ..+..+.+|...+.+++|+|++..
T Consensus 285 ~i~~w~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~- 358 (577)
T 2ymu_A 285 TVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQT- 358 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSE-
T ss_pred EEEEEeCCCcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCE-
Confidence 34556655555555667888999999998 788999999999999999865 345667889999999999999985
Q ss_pred EEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578 683 LATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~ 736 (860)
+++|+.||.+.+|+.... +..++.|++||... +.+..+.+|...|++++|
T Consensus 359 l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----CEEEEEECCSSCEEEEEE
T ss_pred EEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----CEEEEecCCCCCeEEEEE
Confidence 899999999999875422 24578899999643 567788899999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~ 816 (860)
+|++.. +++++.|+.|++||... .. +..+.+|...|++++|+|+++. |++++.|+.|++||...
T Consensus 435 s~d~~~-l~~~~~d~~v~~w~~~~-~~-~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~iw~~~~------------ 498 (577)
T 2ymu_A 435 SPDDQT-IASASDDKTVKLWNRNG-QL-LQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG------------ 498 (577)
T ss_dssp CTTSSE-EEEEETTSEEEEEETTS-CE-EEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEEEETTS------------
T ss_pred CCCCCE-EEEEcCCCEEEEEECCC-CE-EEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEEEcCCC------------
Confidence 999994 99999999999999754 33 6778899999999999999985 89999999999999542
Q ss_pred CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.++..+.+|...|++++|+|+|++ +++++.|+.|++
T Consensus 499 ---~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~v~l 534 (577)
T 2ymu_A 499 ---QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL 534 (577)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEE
T ss_pred ---CEEEEEeCCCCCEEEEEEcCCCCE-EEEEECcCEEEE
Confidence 356677789999999999999995 779999999986
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-24 Score=246.95 Aligned_cols=215 Identities=10% Similarity=0.079 Sum_probs=164.6
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEE--EEccCCCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL--SFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l--~~sp~g~~llasgs~Dg~i~~ 694 (860)
+..|...|++++|++ + ..|++|+.||+|++||++++. .+...+.+|...|+++ .|+|++..+|++|+.|++
T Consensus 262 l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t--- 334 (524)
T 2j04_B 262 LSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY--- 334 (524)
T ss_dssp ECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE---
T ss_pred EEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe---
Confidence 345678899999997 3 489999999999999998752 3445678899999999 567877457999999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC--CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA--EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK 772 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~--~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~ 772 (860)
|++||++++ .....+.+|.. .|.+++|+|++.. +++|+.|++|++||++++.. +..+.+|.
T Consensus 335 ------------vklWD~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~-~~~l~gH~ 397 (524)
T 2j04_B 335 ------------FYIFNPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA-VHPLVSRE 397 (524)
T ss_dssp ------------EEEECGGGH---HHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC-CEEEEECS
T ss_pred ------------EEEEECCCC---CcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc-ceeeecCC
Confidence 999999876 33444555543 5889999999985 88999999999999999876 67788899
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc--------------ccccccCC----------------CCccE
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--------------STEDAEDG----------------PPELL 822 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~--------------~~~~~~~~----------------~~~~i 822 (860)
+.|++++|+|+|+. |++|+.||+|++||+...-... .+....++ ....+
T Consensus 398 ~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 398 TTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSK 476 (524)
T ss_dssp SCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------
T ss_pred CceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcce
Confidence 99999999999986 8899999999999975421110 01111111 13345
Q ss_pred EEecCccCceEEEEEccCCC--eEEEEEeCCCeEee
Q psy4578 823 FIHGGHTAKISDFSWNPNEP--WVICSVSEDNIMQK 856 (860)
Q Consensus 823 ~~~~~h~~~I~~i~~spdg~--~Llasgs~Dg~IrI 856 (860)
..+.+|.+.|.+++|+|++. .++|+|+.||+|||
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 66778999999999999964 36899999999997
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-22 Score=225.54 Aligned_cols=209 Identities=14% Similarity=0.248 Sum_probs=180.6
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
|.+.|++++|+| ++.+|++|+.||.|++||. + ...+..+.+|...|.+++|+|++++ +++++.||.+.+|+...
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-T---GALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVIS 180 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEET-T---SCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTT
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-C---CCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCC
Confidence 456899999998 7899999999999999993 3 3556778889999999999999985 88999999999998753
Q ss_pred c-----------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578 700 E-----------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 738 (860)
Q Consensus 700 ~-----------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp 738 (860)
. +..+|.|++||+.++ ..+..+.+|...|.+++|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEET
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECC
Confidence 2 134678999999986 56677888999999999999
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 739 YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 739 ~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
++. .+++|+.||.|++||++++.. ...+.+|...|.+++|+|++ ++++++.||.|++||+++.
T Consensus 258 ~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~------------- 320 (425)
T 1r5m_A 258 TNK-LLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN------------- 320 (425)
T ss_dssp TTT-EEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT-------------
T ss_pred CCC-EEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC-------------
Confidence 998 599999999999999998876 77888899999999999999 5899999999999999873
Q ss_pred CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
..+.....|...|.+++|+|+++ ++++++.||.|++
T Consensus 321 -~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i 356 (425)
T 1r5m_A 321 -TLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNV 356 (425)
T ss_dssp -EEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred -cEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEE
Confidence 34556667889999999999999 5778899998876
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.2e-23 Score=225.69 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=172.3
Q ss_pred hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578 614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK 690 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg 690 (860)
+..+..|.+.|++++|+++ ++.+|++|+.||.|++||+.++.. .....+..|...|.+++|+|+ +. ++++|+.||
T Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~ 125 (379)
T 3jrp_A 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDG 125 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCC
Confidence 3345567889999999863 388999999999999999987531 256677789999999999998 77 589999999
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-------------CCCcEEEEeeCCCcEEEEe
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-------------YSEYILATGSADKTVALWD 757 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-------------~g~~llasgs~Dg~I~IWD 757 (860)
. |++||+++... .....+.+|...|.+++|+| ++. ++++|+.||.|++||
T Consensus 126 ~---------------i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 126 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK 188 (379)
T ss_dssp E---------------EEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEE
T ss_pred c---------------EEEEecCCCCc-eeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEE
Confidence 8 99999987643 34456778999999999999 577 599999999999999
Q ss_pred CCCCce---eeEEeccCCCceEEEEEcCC---CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578 758 LRNLKL---KLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831 (860)
Q Consensus 758 l~~~~~---~~~~~~~h~~~V~~l~fsp~---g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~ 831 (860)
+++... ....+.+|...|.+++|+|+ +. +|++++.||.|++||+++...... ........|...
T Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~ 258 (379)
T 3jrp_A 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDV 258 (379)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCE---------EEESSSSCCSSC
T ss_pred ecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccce---------eeeeccccCCCc
Confidence 987653 24567889999999999999 65 599999999999999987432111 112223458889
Q ss_pred eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 832 ISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 832 I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|++++|+|+|++ +++++.||.|++
T Consensus 259 v~~~~~s~~g~~-l~~~~~dg~i~i 282 (379)
T 3jrp_A 259 LWRASWSLSGNV-LALSGGDNKVTL 282 (379)
T ss_dssp EEEEEECSSSCC-EEEEESSSSEEE
T ss_pred EEEEEEcCCCCE-EEEecCCCcEEE
Confidence 999999999995 667888998876
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.91 E-value=1e-22 Score=224.83 Aligned_cols=218 Identities=16% Similarity=0.210 Sum_probs=174.5
Q ss_pred EEEEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578 602 EVMYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 602 ~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
..+.+|+.... .+..+..|...|.+++|+| ++.++++|+.||.|++||+.+++. .....+..|...|.+++|+|+
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW-KPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE-EEEEECCCCSSCEEEEEECTT
T ss_pred CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee-eeeEEeecCCCceeEEEECCC
Confidence 34556666555 4445556788999999998 789999999999999999987532 223344678999999999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD 757 (860)
+++ +++|+.||. |++||+........... ..+|...|.+++|+|++. .+++|+.||.|++||
T Consensus 108 ~~~-l~~~~~d~~---------------v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 108 EKK-FAVGSGSRV---------------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFS 170 (372)
T ss_dssp SSE-EEEEETTSS---------------EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred CCE-EEEEeCCCE---------------EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence 985 899999998 99999987632112223 367899999999999998 499999999999999
Q ss_pred CC------------------CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578 758 LR------------------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819 (860)
Q Consensus 758 l~------------------~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~ 819 (860)
++ .+.. +..+.+|...|.+++|+|++.. |++++.||.|++||+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~-------------- 234 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFGEL-MFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK-------------- 234 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCE-EEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT--------------
T ss_pred cccccccccccccccccccchhhh-eEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEECCCC--------------
Confidence 64 3443 7778889999999999999985 899999999999999873
Q ss_pred ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
..+..+..|...|.+++|+|++. ++++| .|+.|++
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i 269 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVL 269 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEE
T ss_pred ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEE
Confidence 34566678889999999999998 46566 6776664
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=1.9e-22 Score=224.98 Aligned_cols=228 Identities=16% Similarity=0.207 Sum_probs=175.1
Q ss_pred EEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578 603 VMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 679 (860)
Q Consensus 603 il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 679 (860)
.+.+|+.......... +|.+.|.+++|+|.++.++++|+.||.|++||+.+. ..........|...|.+++|+|++
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTT
T ss_pred eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCC
Confidence 3555666554444333 578899999999977899999999999999999852 222222234455889999999999
Q ss_pred CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759 (860)
Q Consensus 680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~ 759 (860)
.. +++|+.||. |++||++ + ..+..+.+|...|.+++|+|++.+++++|+.||.|++||++
T Consensus 176 ~~-l~~~~~d~~---------------i~i~d~~-~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 176 QM-LATGDSTGR---------------LLLLGLD-G---HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp TE-EEEEETTSE---------------EEEEETT-S---CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred CE-EEEECCCCC---------------EEEEECC-C---CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 85 899999998 9999994 2 57778889999999999999999679999999999999999
Q ss_pred C----CceeeEEeccCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccc--------------------
Q psy4578 760 N----LKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDA-------------------- 814 (860)
Q Consensus 760 ~----~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-------------------- 814 (860)
+ ... +..+ +|...|++++|+| +|.. |++++.||.|++||+++..........
T Consensus 236 ~~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 312 (383)
T 3ei3_B 236 NIKDKNSY-IAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD 312 (383)
T ss_dssp GCCSTTCE-EEEE-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred CCCcccce-EEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence 7 333 4444 6999999999999 8875 889999999999999886654332210
Q ss_pred ---------------cC--------CCCccEEEecC--ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 815 ---------------ED--------GPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 815 ---------------~~--------~~~~~i~~~~~--h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+ .....+..+.+ |.+.+..++|+|+|++ +++|+ |+.|+|
T Consensus 313 ~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~-l~s~s-d~~i~i 377 (383)
T 3ei3_B 313 LIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV-LASGM-GFNILI 377 (383)
T ss_dssp EEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE-EEEEE-TTEEEE
T ss_pred ceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE-EEEec-CCcEEE
Confidence 00 12234445554 5567778899999995 66776 788875
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=5.1e-22 Score=215.56 Aligned_cols=214 Identities=17% Similarity=0.289 Sum_probs=176.7
Q ss_pred EEEEeeccchhhhhhhh------hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578 602 EVMYLENKTRAQICQLL------DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 675 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~------~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~ 675 (860)
..+.+|+.......... .+...|.+++|+| ++.++++|+.||.|++||+.++.. .....+..|...|.+++|
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAI 149 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEE
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCc-ceeeecccCCCceEEEEE
Confidence 34556665444322221 5678899999998 788999999999999999987532 245567789999999999
Q ss_pred ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578 676 NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 755 (860)
Q Consensus 676 sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I 755 (860)
+|+++. +++|+.||. |++||++++ ..+..+.+|...|.+++|+|++.. +++|+.||.|++
T Consensus 150 ~~~~~~-l~~~~~dg~---------------v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~ 209 (337)
T 1gxr_A 150 SPDSKV-CFSCCSDGN---------------IAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRS 209 (337)
T ss_dssp CTTSSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred CCCCCE-EEEEeCCCc---------------EEEEeCCCC---ceeeeeecccCceEEEEECCCCCE-EEEEecCCcEEE
Confidence 999985 889999998 999999886 667788889999999999999984 899999999999
Q ss_pred EeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578 756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 835 (860)
Q Consensus 756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i 835 (860)
||++++.. ...+ .+...+.+++|+|+++. +++++.||.|++||+.+.. ......|...|.++
T Consensus 210 ~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 210 WDLREGRQ-LQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD---------------KYQLHLHESCVLSL 271 (337)
T ss_dssp EETTTTEE-EEEE-ECSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC---------------EEEECCCSSCEEEE
T ss_pred EECCCCce-Eeee-cCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCC---------------eEEEcCCccceeEE
Confidence 99999876 4444 47889999999999985 8899999999999998732 23456789999999
Q ss_pred EEccCCCeEEEEEeCCCeEee
Q psy4578 836 SWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 836 ~~spdg~~Llasgs~Dg~IrI 856 (860)
+|+|++++ +++++.||.|++
T Consensus 272 ~~~~~~~~-l~~~~~dg~i~~ 291 (337)
T 1gxr_A 272 KFAYCGKW-FVSTGKDNLLNA 291 (337)
T ss_dssp EECTTSSE-EEEEETTSEEEE
T ss_pred EECCCCCE-EEEecCCCcEEE
Confidence 99999995 778999998886
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=224.63 Aligned_cols=209 Identities=19% Similarity=0.333 Sum_probs=174.9
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCcee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQF 693 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~ 693 (860)
.+.+|.+.|++++|+| ++.+|++|+.||.|++||+..+. ......+.+|...|++++|+++ +. ++++|+.||.
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~-- 80 (379)
T 3jrp_A 6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK-- 80 (379)
T ss_dssp CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSC--
T ss_pred EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCE--
Confidence 3456788999999998 78899999999999999997432 3556778899999999999977 66 5999999998
Q ss_pred eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEecc
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFES 770 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~ 770 (860)
|++||+.++.. ..+..+.+|...|.+++|+|+ +. ++++|+.||.|++||++.... ....+.+
T Consensus 81 -------------v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 81 -------------VLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp -------------EEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred -------------EEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 99999987621 256677889999999999999 77 599999999999999998743 2456678
Q ss_pred CCCceEEEEEcC-------------CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 771 HKDEIFQVQWSP-------------HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 771 h~~~V~~l~fsp-------------~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
|...|.+++|+| ++. ++++|+.||.|++||+++.... ..+.....+|...|++++|
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcc----------eeeEEEEecccCcEeEEEE
Confidence 999999999999 576 5899999999999999874321 2345677789999999999
Q ss_pred ccC---CCeEEEEEeCCCeEee
Q psy4578 838 NPN---EPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 spd---g~~Llasgs~Dg~IrI 856 (860)
+|+ +. ++++++.||.|++
T Consensus 215 sp~~~~~~-~l~s~~~dg~i~i 235 (379)
T 3jrp_A 215 SPTVLLRS-YLASVSQDRTCII 235 (379)
T ss_dssp CCCCSSSE-EEEEEETTSCEEE
T ss_pred CCCCCCCC-eEEEEeCCCEEEE
Confidence 999 56 6889999999886
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=1.3e-22 Score=228.20 Aligned_cols=204 Identities=21% Similarity=0.352 Sum_probs=164.1
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC------------------CCCeeEEEEccC
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH------------------TAEVNCLSFNPY 678 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h------------------~~~V~~l~~sp~ 678 (860)
.++|.+.|++++|+| ++.+|++|+ ++.+++|++.++.. +..+..| ...|++++|+|+
T Consensus 60 ~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 60 SLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp EEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTT
T ss_pred ecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 446888999999999 788899876 68999999987533 3333333 234999999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
|++ +++|+.||+ |++||+.++ +.+..+.+|...|.+++|+|++.+ +++|+.||+|++||+
T Consensus 135 g~~-l~s~~~d~~---------------i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 135 GKF-LATGAEDRL---------------IRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDL 194 (393)
T ss_dssp SSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET
T ss_pred CCE-EEEEcCCCe---------------EEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEEC
Confidence 985 899999999 999999876 567788999999999999999995 899999999999999
Q ss_pred CCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 759 RNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 759 ~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
+++.. ...+. +...+.+++|+| +|. ++++|+.||.|++||++++........ ......+|...|++++|
T Consensus 195 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~-------~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 195 RTGQC-SLTLS-IEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDS-------ENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC-------------CCCSSCEEEEEE
T ss_pred CCCee-EEEEE-cCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecc-------cccCCCCCCCCEEEEEE
Confidence 99876 44444 567899999999 676 589999999999999987543322110 01122579999999999
Q ss_pred ccCCCeEEEEEeCCCeEee
Q psy4578 838 NPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 spdg~~Llasgs~Dg~IrI 856 (860)
+|+|++ +++|+.|+.|++
T Consensus 265 ~~~g~~-l~s~s~d~~v~~ 282 (393)
T 1erj_A 265 TRDGQS-VVSGSLDRSVKL 282 (393)
T ss_dssp CTTSSE-EEEEETTSEEEE
T ss_pred CCCCCE-EEEEeCCCEEEE
Confidence 999995 779999999986
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=4.1e-22 Score=217.52 Aligned_cols=225 Identities=12% Similarity=0.121 Sum_probs=184.7
Q ss_pred EEEEeeccchhh----hhhhhhcccceeeeEeeccCCc-EEEEEeCCCcEEEEEc-CCCCcccCeeeccC--CCCCeeEE
Q psy4578 602 EVMYLENKTRAQ----ICQLLDKLRLLIDVAWHLLHES-LFGSVADDQKLMIWDT-RSHNVSKPSHTVDA--HTAEVNCL 673 (860)
Q Consensus 602 ~il~l~n~~~~~----l~~l~~~~~~V~~v~~sp~~~~-~lasgs~DG~I~IWd~-~~~~~~~~~~~~~~--h~~~V~~l 673 (860)
..+.+|+..... ......|...|.+++|+| ++. ++++|+.||.|++||+ .++. ...+.+ |...|.++
T Consensus 33 ~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 33 GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPS----FQALTNNEANLGICRI 107 (342)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSS----EEECBSCCCCSCEEEE
T ss_pred CeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCc----eEeccccCCCCceEEE
Confidence 445666665555 566667888999999998 688 9999999999999999 7642 366777 99999999
Q ss_pred EEccCCCeEEEEEeCCCceeeecccc---------c------------------------ccCCCcEEEEeCCC-CCCCC
Q psy4578 674 SFNPYSEYILATGSADKTQFEVEEEE---------E------------------------ENYDQKLMIWDTRS-HNVSK 719 (860)
Q Consensus 674 ~~sp~g~~llasgs~Dg~i~~~~~~~---------~------------------------~~~dg~I~iwDl~~-~~~~~ 719 (860)
+|+| +. .+++|+.||.+.+|+... . +..++.|++||+++ ... .
T Consensus 108 ~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~ 184 (342)
T 1yfq_A 108 CKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-N 184 (342)
T ss_dssp EEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-C
T ss_pred EeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-c
Confidence 9999 77 589999999999998765 2 23578999999987 432 2
Q ss_pred CeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcEEEEeCCCC-----ceeeEEeccCCC---------ceEEEEEcCCC
Q psy4578 720 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRNL-----KLKLHSFESHKD---------EIFQVQWSPHN 784 (860)
Q Consensus 720 ~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I~IWDl~~~-----~~~~~~~~~h~~---------~V~~l~fsp~g 784 (860)
.......|...|.+++|+| ++. .+++|+.||.|++||++.. ......+..|.. .|.+++|+|++
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred ceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 3345567889999999999 998 4999999999999999887 233677777765 99999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc-cCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
++ |++|+.||.|++||+.++ ..+..+.+| .+.|++++ |+|.+ +++++.||.
T Consensus 264 ~~-l~~~~~dg~i~vwd~~~~--------------~~~~~~~~~h~~~v~~~~--~~~~~-l~s~s~Dg~ 315 (342)
T 1yfq_A 264 KF-LYTAGSDGIISCWNLQTR--------------KKIKNFAKFNEDSVVKIA--CSDNI-LCLATSDDT 315 (342)
T ss_dssp CC-EEEEETTSCEEEEETTTT--------------EEEEECCCCSSSEEEEEE--ECSSE-EEEEEECTH
T ss_pred CE-EEEecCCceEEEEcCccH--------------hHhhhhhcccCCCceEec--CCCCe-EEEEecCCc
Confidence 86 889999999999999873 445667787 99999999 99994 778888887
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=4e-23 Score=227.04 Aligned_cols=222 Identities=18% Similarity=0.338 Sum_probs=176.0
Q ss_pred eEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---cCCCCCeeEEEEc
Q psy4578 601 EEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFN 676 (860)
Q Consensus 601 ~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---~~h~~~V~~l~~s 676 (860)
...+.+|+....+... +..|...|.+++|+|.++.++++|+.||.|++||+.+++ ....+ .+|...|.+++|+
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EEEEecccccccCceeEEEEC
Confidence 3356667765555444 445788999999998778999999999999999998853 34444 6899999999999
Q ss_pred cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC-------------------------CCeeeecCCCCCe
Q psy4578 677 PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS-------------------------KPSHTVDAHTAEV 731 (860)
Q Consensus 677 p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~-------------------------~~~~~~~~h~~~I 731 (860)
|++.. +++|+.||. |++||++++... .......+|...|
T Consensus 171 ~~~~~-l~~~~~dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 171 LLGEK-IMSCGMDHS---------------LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSSE-EEEEETTSC---------------EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred CCCCE-EEEecCCCC---------------EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 99985 899999998 888888764210 1122334499999
Q ss_pred EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-------------eeEEeccCCCceEEEEEcCC--CCCEEEEEECCCc
Q psy4578 732 NCLSFNPYSEYILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQWSPH--NETILASSGTDRR 796 (860)
Q Consensus 732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-------------~~~~~~~h~~~V~~l~fsp~--g~~lL~tgs~Dg~ 796 (860)
.+++|+ +. ++++|+.||.|++||+++... .+..+..|...|++++|+|+ ++ +|++|+.||.
T Consensus 235 ~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~ 310 (366)
T 3k26_A 235 DCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGK 310 (366)
T ss_dssp CEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSC
T ss_pred EEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCc
Confidence 999999 55 599999999999999987642 26677889999999999999 87 4899999999
Q ss_pred EEEEECCCCCcccccccccCCCCccEEEecCc--cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 797 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 797 I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h--~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|++||+.+..... .....+.+| ...|++++|+|++++ +++++.||.|++
T Consensus 311 i~vwd~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~i 361 (366)
T 3k26_A 311 LYVWDLEVEDPHK----------AKCTTLTHHKCGAAIRQTSFSRDSSI-LIAVCDDASIWR 361 (366)
T ss_dssp EEEEECCSSSGGG----------CEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred EEEEECCCCCCcc----------ccceEEcccccCCceEEEEeCCCCCe-EEEEeCCCEEEE
Confidence 9999999854321 233455566 799999999999994 779999999986
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=8e-23 Score=227.93 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=155.4
Q ss_pred cceeeeEeeccCCcEEE--EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 622 RLLIDVAWHLLHESLFG--SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~la--sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
..+.+++|+| ++++++ +++.|++|+|||+.++ ..+..+ .|.+.|.+++|+|+|++ +++++.++
T Consensus 134 ~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~---~~~~~~-~~~~~V~~v~fspdg~~-l~s~s~~~--------- 198 (365)
T 4h5i_A 134 DYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDL---TEKFEI-ETRGEVKDLHFSTDGKV-VAYITGSS--------- 198 (365)
T ss_dssp CCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSSE-EEEECSSC---------
T ss_pred cCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCC---cEEEEe-CCCCceEEEEEccCCce-EEecccee---------
Confidence 4588999999 666655 4457899999999984 344444 47788999999999995 78887665
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCcee---eEEeccCC
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLK---LHSFESHK 772 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~---~~~~~~h~ 772 (860)
+.+|+..++.. .......+|...|.+++|+|++.. +++++.|+ .+++||+...... ...+.+|.
T Consensus 199 -------~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 199 -------LEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF 269 (365)
T ss_dssp -------EEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred -------EEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence 67777766522 122344578889999999999995 88888777 5888998776542 34567899
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE-ecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~-~~~h~~~I~~i~~spdg~~Llasgs~D 851 (860)
..|++++|+|+|++ |++|+.||+|++||+.++ .++.. ..+|.+.|++++|+|||+ +|++||.|
T Consensus 270 ~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D 333 (365)
T 4h5i_A 270 KGITSMDVDMKGEL-AVLASNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDST-YVASVSAA 333 (365)
T ss_dssp SCEEEEEECTTSCE-EEEEETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSC-EEEEEETT
T ss_pred CCeEeEEECCCCCc-eEEEcCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCC-EEEEEeCC
Confidence 99999999999985 999999999999999873 34444 468999999999999999 58899999
Q ss_pred CeEee
Q psy4578 852 NIMQK 856 (860)
Q Consensus 852 g~IrI 856 (860)
++|||
T Consensus 334 ~tvrv 338 (365)
T 4h5i_A 334 NTIHI 338 (365)
T ss_dssp SEEEE
T ss_pred CeEEE
Confidence 99997
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.90 E-value=7.4e-23 Score=230.60 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=170.5
Q ss_pred EEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+.........+ .|.+.|.+++|+| ++.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++..
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CCCEEEECCSSCEEEEEEETTTTE
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---cCceEEcCCCCcEEEEEEcCCCCE
Confidence 4566666666655554 7788999999998 7889999999999999999884 456677899999999999999985
Q ss_pred EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---CC---------------------CCeEEEEEc
Q psy4578 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---HT---------------------AEVNCLSFN 737 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---h~---------------------~~I~sl~~s 737 (860)
+++|+.||+ |++||++++ ..+..+.. |. ..+.+++|+
T Consensus 196 -l~s~~~d~~---------------v~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 196 -VLSASLDGT---------------IRLWECGTG---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp -EEEEETTSC---------------EEEEETTTT---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred -EEEEcCCCc---------------EEEeECCCC---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 889999999 999998876 34444432 33 445555567
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578 738 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817 (860)
Q Consensus 738 p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~ 817 (860)
|++.+ +++|+.||.|++||++++.........|...|++++|+|+++.++++|+.||.|++||+++...
T Consensus 257 ~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------- 325 (420)
T 3vl1_A 257 TYGKY-VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------- 325 (420)
T ss_dssp CTTEE-EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------
T ss_pred CCCCE-EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------
Confidence 88884 8999999999999999988744445568899999999999985699999999999999987432
Q ss_pred CCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 818 PPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 818 ~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++....+ |...|.++.| +++. ++++++.|+.|++
T Consensus 326 ---~~~~~~~~~~~~v~~~~~-~~~~-~l~s~~~d~~v~i 360 (420)
T 3vl1_A 326 ---PVGEFLINEGTPINNVYF-AAGA-LFVSSGFDTSIKL 360 (420)
T ss_dssp ---CSEEEEESTTSCEEEEEE-ETTE-EEEEETTTEEEEE
T ss_pred ---chhhhhccCCCCceEEEe-CCCC-EEEEecCCccEEE
Confidence 1233333 6677888855 5666 6889999999986
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=1.8e-22 Score=225.09 Aligned_cols=204 Identities=17% Similarity=0.281 Sum_probs=165.8
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
.+|.+.|++++|+|++..++++|+.||.|++||+.++.. .......+|...|.+++|+|++...+++|+.||.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------ 142 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA------ 142 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE------
Confidence 456789999999995448999999999999999987533 1222234799999999999954446999999998
Q ss_pred cccccCCCcEEEEeCCCCCCCCCeeee---cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~---~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|++||+.+. .+..+ .+|...|.+++|+|++. .+++|+.||.|++||++ +.. +..+.+|...
T Consensus 143 ---------i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~-~~~~~~h~~~ 206 (383)
T 3ei3_B 143 ---------TTLRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHE-IFKEKLHKAK 206 (383)
T ss_dssp ---------EEEEETTSC----EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCE-EEEEECSSSC
T ss_pred ---------EEEEECCCC----ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCE-EEEeccCCCc
Confidence 999999852 33334 34458899999999999 49999999999999995 333 7788899999
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeEEEEEeCCCe
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNI 853 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llasgs~Dg~ 853 (860)
|.+++|+|++++++++|+.||.|++||+++.... ..++... +|...|++++|+| +|.+ +++++.|+.
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~ 274 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNE 274 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEE-ECSSCEEEEEECTTTSCE-EEEEESSSE
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCc
Confidence 9999999999867999999999999999874321 2233333 6899999999999 9985 778899999
Q ss_pred Eee
Q psy4578 854 MQK 856 (860)
Q Consensus 854 IrI 856 (860)
|++
T Consensus 275 i~i 277 (383)
T 3ei3_B 275 IRV 277 (383)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 68
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=3.3e-22 Score=238.51 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=174.4
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+++|+. ......+.+|.+.|.+++|+|++...|++|+.|++|++||..+ .+....+.+|...|++++|+|+|+ +
T Consensus 130 ~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~-~ 204 (611)
T 1nr0_A 130 HVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS-L 204 (611)
T ss_dssp EEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS-E
T ss_pred EEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC-E
Confidence 4566663 3334456678889999999995556799999999999999876 355678889999999999999998 5
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec-------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-------AHTAEVNCLSFNPYSEYILATGSADKTVAL 755 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-------~h~~~I~sl~~sp~g~~llasgs~Dg~I~I 755 (860)
+++|+.|++ |++||+.++ .....+. +|.+.|.+++|+|+|.+ |++|+.|++|++
T Consensus 205 las~s~D~~---------------i~lwd~~~g---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~l 265 (611)
T 1nr0_A 205 FASTGGDGT---------------IVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKI 265 (611)
T ss_dssp EEEEETTSC---------------EEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred EEEEECCCc---------------EEEEECCCC---cEeeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEE
Confidence 999999999 999999876 3444442 79999999999999995 999999999999
Q ss_pred EeCCCCcee------------------------------------------eEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578 756 WDLRNLKLK------------------------------------------LHSFESHKDEIFQVQWSPHNETILASSGT 793 (860)
Q Consensus 756 WDl~~~~~~------------------------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~ 793 (860)
||++++... ...+.+|...|++++|+|+|++ |++|+.
T Consensus 266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~ 344 (611)
T 1nr0_A 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADA 344 (611)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEET
T ss_pred EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeC
Confidence 999876531 1234579999999999999985 899999
Q ss_pred CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
||+|++||+.++..... ...+|...|.+++|++++. +++++.|+.+++
T Consensus 345 D~~v~~Wd~~~~~~~~~-------------~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~ 392 (611)
T 1nr0_A 345 EGHINSWDISTGISNRV-------------FPDVHATMITGIKTTSKGD--LFTVSWDDHLKV 392 (611)
T ss_dssp TSCEEEEETTTCCEEEC-------------SSCSCSSCEEEEEECTTSC--EEEEETTTEEEE
T ss_pred CCcEEEEECCCCceeee-------------cccCCcceEEEEEECCCCc--EEEEEcCCceEE
Confidence 99999999987443211 1146889999999998875 568889998875
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.9e-22 Score=211.50 Aligned_cols=225 Identities=20% Similarity=0.259 Sum_probs=184.0
Q ss_pred EEEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578 602 EVMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 680 (860)
Q Consensus 602 ~il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 680 (860)
..+.+|+...... .....|.+.|.+++|+| ++.++++|+.||.|++|++...........+.+|...|.++.|+ ++
T Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 115 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG 115 (313)
T ss_dssp SEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT
T ss_pred CcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CC
Confidence 3455565554443 33445678899999998 78999999999999999998766566777888999999999993 55
Q ss_pred eEEEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEE
Q psy4578 681 YILATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNC 733 (860)
Q Consensus 681 ~llasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~s 733 (860)
.+++|+.||.+.+|+.... +..+|.|++||.. .....+.. |...|.+
T Consensus 116 -~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~i~~ 189 (313)
T 3odt_A 116 -VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRH 189 (313)
T ss_dssp -EEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----EEEEEECSSCSSCEEE
T ss_pred -EEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----ceEEEEeccCcccEEE
Confidence 5899999999999973321 2457899999943 34555666 8999999
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578 734 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 813 (860)
Q Consensus 734 l~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~ 813 (860)
++|+|++. +++|+.||.|++||++++.. +..+.+|...|++++|+|++ . +++++.||.|++||+.+.
T Consensus 190 ~~~~~~~~--~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~-------- 256 (313)
T 3odt_A 190 LAVVDDGH--FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG-------- 256 (313)
T ss_dssp EEEEETTE--EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC--------
T ss_pred EEEcCCCe--EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC--------
Confidence 99999987 78999999999999999886 78888999999999999999 4 789999999999999873
Q ss_pred ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
........|...|++++|+|++. ++ +++.||.|++
T Consensus 257 ------~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~dg~i~i 291 (313)
T 3odt_A 257 ------SLKQVITLPAISIWSVDCMSNGD-II-VGSSDNLVRI 291 (313)
T ss_dssp ------CEEEEEECSSSCEEEEEECTTSC-EE-EEETTSCEEE
T ss_pred ------ceeEEEeccCceEEEEEEccCCC-EE-EEeCCCcEEE
Confidence 34556677888999999999998 34 6888988876
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.90 E-value=2.3e-22 Score=224.51 Aligned_cols=216 Identities=16% Similarity=0.223 Sum_probs=172.6
Q ss_pred EEEeeccchhh------hhhhhhc-----ccceeeeEee----ccCCcE-EEEEeCCCcEEEEEcCC------CCccc--
Q psy4578 603 VMYLENKTRAQ------ICQLLDK-----LRLLIDVAWH----LLHESL-FGSVADDQKLMIWDTRS------HNVSK-- 658 (860)
Q Consensus 603 il~l~n~~~~~------l~~l~~~-----~~~V~~v~~s----p~~~~~-lasgs~DG~I~IWd~~~------~~~~~-- 658 (860)
.+.+|+..... ...+..+ ...|.+++|+ | ++.+ |++|+.||.|++||+.+ +....
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 35555555554 3444445 4889999999 8 6777 99999999999999987 43221
Q ss_pred Ceeec-------cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---C-
Q psy4578 659 PSHTV-------DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---H- 727 (860)
Q Consensus 659 ~~~~~-------~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---h- 727 (860)
+...+ ..|...|++++|+|++ ++++|+.||. |++||++++ ..+..+.. |
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~---------------i~i~d~~~~---~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGT---------------VQISELSTL---RPLYNFESQHSMI 230 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSE---------------EEEEETTTT---EEEEEEECCC---
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCc---------------EEEEECCCC---ceeEEEecccccc
Confidence 11144 4588999999999999 5899999998 999999886 56677777 8
Q ss_pred --CCCeEEEEEcCCCCcEEEEeeCC---CcEEEEeCCCCceeeEEecc-------------CCCceEEEEEcCCCCCEEE
Q psy4578 728 --TAEVNCLSFNPYSEYILATGSAD---KTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNETILA 789 (860)
Q Consensus 728 --~~~I~sl~~sp~g~~llasgs~D---g~I~IWDl~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~ 789 (860)
...|.+++|+|++.+ +++|+.| |.|++||++++.. +..+.+ |...|.+++|+|++++ |+
T Consensus 231 ~~~~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSE-EE
T ss_pred ccCCccceEEECCCCCE-EEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEEEEEECCCCCE-EE
Confidence 999999999999984 8899999 9999999999876 778888 9999999999999985 89
Q ss_pred EEECCCcEEEEECCCCCcccccccccCCCCccEEEec------Cc---------------cCceEEEEEccCCC------
Q psy4578 790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG------GH---------------TAKISDFSWNPNEP------ 842 (860)
Q Consensus 790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~------~h---------------~~~I~~i~~spdg~------ 842 (860)
+|+.||.|++||+.+.... ..+. +| ...|++++|+|+|+
T Consensus 308 ~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERI--------------TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEETTSEEEEEETTTTEEE--------------EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEeCCCeEEEEEcCCCcee--------------EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 9999999999999885433 3333 44 89999999999983
Q ss_pred ---eEEEEEeCCCeEee
Q psy4578 843 ---WVICSVSEDNIMQK 856 (860)
Q Consensus 843 ---~Llasgs~Dg~IrI 856 (860)
.++++++.||.|++
T Consensus 374 ~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 374 DLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSCEEEEEETTTEEEE
T ss_pred cccceEEEecCCCcEEE
Confidence 36889999999986
No 71
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=8.7e-23 Score=224.32 Aligned_cols=227 Identities=14% Similarity=0.256 Sum_probs=179.2
Q ss_pred EEEeeccchhhhhhhhh------cccceeeeEeeccC---CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEE
Q psy4578 603 VMYLENKTRAQICQLLD------KLRLLIDVAWHLLH---ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL 673 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~------~~~~V~~v~~sp~~---~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l 673 (860)
.+.+|+.........+. +...|.+++|+|+. +.++++|+.||.|++||+.++ +.+..+.+|...|+++
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINEL 121 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---CEEEEEESCCSCEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---eEeeeecCCCCcEEEE
Confidence 34555555444333332 34679999999842 569999999999999999874 5567778899999999
Q ss_pred EEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---cCCCCCeEEEEEcCCCCcEEEEeeC
Q psy4578 674 SFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEYILATGSA 749 (860)
Q Consensus 674 ~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---~~h~~~I~sl~~sp~g~~llasgs~ 749 (860)
+|+| ++. ++++|+.||. |++||++++ ..+..+ .+|...|.+++|+|++.+ +++|+.
T Consensus 122 ~~~~~~~~-~l~s~~~dg~---------------i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~ 181 (366)
T 3k26_A 122 KFHPRDPN-LLLSVSKDHA---------------LRLWNIQTD---TLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGM 181 (366)
T ss_dssp EECSSCTT-EEEEEETTSC---------------EEEEETTTT---EEEEEECSTTSCSSCEEEEEECTTSSE-EEEEET
T ss_pred EECCCCCC-EEEEEeCCCe---------------EEEEEeecC---eEEEEecccccccCceeEEEECCCCCE-EEEecC
Confidence 9999 666 6999999998 999999886 445555 689999999999999985 899999
Q ss_pred CCcEEEEeCCCCcee---------------------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578 750 DKTVALWDLRNLKLK---------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802 (860)
Q Consensus 750 Dg~I~IWDl~~~~~~---------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl 802 (860)
||.|++||++++... .....+|...|.+++|+ ++ ++++++.||.|++||+
T Consensus 182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 182 DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKP 258 (366)
T ss_dssp TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEE
T ss_pred CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeC
Confidence 999999999876531 12233499999999999 55 5899999999999999
Q ss_pred CCCCcccccccccCCCCccEEEecCccCceEEEEEccC--CCeEEEEEeCCCeEee
Q psy4578 803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQK 856 (860)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd--g~~Llasgs~Dg~IrI 856 (860)
.+.................+....+|...|++++|+|+ ++ ++++|+.||.|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~v 313 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYV 313 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEE
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEE
Confidence 88665433332233334567778899999999999999 88 5779999999886
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=7.4e-22 Score=222.34 Aligned_cols=214 Identities=23% Similarity=0.438 Sum_probs=177.9
Q ss_pred EEEEeeccchhhhhhhhh--cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578 602 EVMYLENKTRAQICQLLD--KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 679 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~--~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 679 (860)
..+++|+...+....... +.+.|.+++|+| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+ +
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~--~ 186 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSWN--R 186 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEEE--T
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC---eEEEEecCCCCceEEEEEC--C
Confidence 346777776666554443 567899999998 7889999999999999999884 5567788999999999995 4
Q ss_pred CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759 (860)
Q Consensus 680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~ 759 (860)
. .+++|+.||. |++||++... .....+.+|.+.|.+++|+|++. ++++|+.||.|++||++
T Consensus 187 ~-~l~~~~~dg~---------------i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 187 H-VLSSGSRSGA---------------IHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDAR 247 (401)
T ss_dssp T-EEEEEETTSE---------------EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred C-EEEEEcCCCC---------------EEEEecccCc--ceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCC
Confidence 4 6999999998 9999998542 56778889999999999999998 49999999999999999
Q ss_pred CCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
+... ...+..|...|.+++|+|++..++++|+ .||.|++||+.++.. +... .+...|.+++|
T Consensus 248 ~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--------------~~~~-~~~~~v~~~~~ 311 (401)
T 4aez_A 248 SSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--------------VNTV-DAGSQVTSLIW 311 (401)
T ss_dssp CSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--------------EEEE-ECSSCEEEEEE
T ss_pred CCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--------------EEEE-eCCCcEEEEEE
Confidence 9876 7788889999999999999988888876 799999999987433 2233 35678999999
Q ss_pred ccCCCeEEEE-EeCCCeEee
Q psy4578 838 NPNEPWVICS-VSEDNIMQK 856 (860)
Q Consensus 838 spdg~~Llas-gs~Dg~IrI 856 (860)
+|++++++++ |+.||.|++
T Consensus 312 s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEE
T ss_pred CCCCCeEEEEeecCCCcEEE
Confidence 9999976654 448898876
No 73
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.5e-22 Score=223.06 Aligned_cols=239 Identities=18% Similarity=0.192 Sum_probs=170.8
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC--------------
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE-------------- 669 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~-------------- 669 (860)
+.+|+.....+..+..|...|.+++|+| ++.++++++.||.|++||+.++. ....+..+...
T Consensus 132 i~i~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 132 LRLWNKTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGT---VMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp EEEEETTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTE---EEEEECCC---------------CC
T ss_pred EEEEeCCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCc---EEEEeeccccCccceeeccccCCcc
Confidence 4455555555555666788999999998 78899999999999999997642 22233333322
Q ss_pred -eeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCe
Q psy4578 670 -VNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPS 721 (860)
Q Consensus 670 -V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~ 721 (860)
+.+++|+|++. +++++.+|.+.+|+.... +..++.|++||++++ ..+
T Consensus 208 ~~~~~~~~~~~~--~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~ 282 (425)
T 1r5m_A 208 LGVDVEWVDDDK--FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---NSQ 282 (425)
T ss_dssp CBSCCEEEETTE--EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---SCS
T ss_pred eeeEEEEcCCCE--EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---ccc
Confidence 44444444322 344444444444433221 112444999999886 566
Q ss_pred eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578 722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801 (860)
Q Consensus 722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd 801 (860)
..+.+|...|.+++|+|++ .+++|+.||.|++||++++.. +..+..|...|.+++|+|+++. |++|+.||.|++||
T Consensus 283 ~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVNVYD 358 (425)
T ss_dssp EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCE-EEEEECCCeEEEEE
Confidence 7778899999999999998 589999999999999999886 7788889999999999999985 89999999999999
Q ss_pred CCCCCcccccc-ccc-----CCCCccEEEecCccC--ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 802 LSKIGEEQSTE-DAE-----DGPPELLFIHGGHTA--KISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 802 l~~~~~~~~~~-~~~-----~~~~~~i~~~~~h~~--~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+.+........ ... .....++..+.+|.. .|++++|+|++++ +++++.||.|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i 420 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK-ISVAYSLQEGSV 420 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE-EEEEESSSCCEE
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce-EEEEecCceEEE
Confidence 98744111000 000 001226777888876 9999999999995 678889998875
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=219.76 Aligned_cols=200 Identities=21% Similarity=0.292 Sum_probs=160.9
Q ss_pred hhhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578 615 CQLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ 692 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i 692 (860)
..+..|.+.|++++|+|++ +.+|++|+.||.|++||+.+.. ......+.+|...|++++|+|++++ +++|+.||.
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~- 109 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDGSK-VFTASCDKT- 109 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSE-
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECcCCCE-EEEEcCCCc-
Confidence 3345677899999999954 6999999999999999998732 2233667789999999999999985 889999998
Q ss_pred eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE--cCCCCcEEEEeeCCCcEEEEeCCCCcee------
Q psy4578 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NPYSEYILATGSADKTVALWDLRNLKLK------ 764 (860)
Q Consensus 693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~--sp~g~~llasgs~Dg~I~IWDl~~~~~~------ 764 (860)
|++||+.++ . .....+|...|++++| +|++. ++++|+.||.|++||++++...
T Consensus 110 --------------v~iwd~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 110 --------------AKMWDLSSN---Q-AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp --------------EEEEETTTT---E-EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred --------------EEEEEcCCC---C-ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 999999876 2 3346679999999999 88888 4899999999999998765320
Q ss_pred --------------------------------------------------------------------------------
Q psy4578 765 -------------------------------------------------------------------------------- 764 (860)
Q Consensus 765 -------------------------------------------------------------------------------- 764 (860)
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence
Q ss_pred ---eEEeccCCC------------ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578 765 ---LHSFESHKD------------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829 (860)
Q Consensus 765 ---~~~~~~h~~------------~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~ 829 (860)
...+.+|.. .|++++|+|++++ |++|+.||.|++||+.++ .++..+.+|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~ 315 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR--------------TKLKTSEQLD 315 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT--------------EEEEECCCCS
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC--------------cEEEEecCCC
Confidence 112223333 6999999999986 899999999999999873 4566677899
Q ss_pred CceEEEEEccCCCeEEEEEeCCC
Q psy4578 830 AKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 830 ~~I~~i~~spdg~~Llasgs~Dg 852 (860)
..|++++|+|+|++++ +++.|+
T Consensus 316 ~~v~~~~~s~~g~~l~-~~s~d~ 337 (368)
T 3mmy_A 316 QPISACCFNHNGNIFA-YASSYD 337 (368)
T ss_dssp SCEEEEEECTTSSCEE-EEECCC
T ss_pred CCceEEEECCCCCeEE-EEeccc
Confidence 9999999999999755 555554
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=5.1e-22 Score=223.67 Aligned_cols=214 Identities=21% Similarity=0.385 Sum_probs=176.0
Q ss_pred EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+....+ +..+..|.+.|.+++|+ ++++++|+.||.|++||+... ......+.+|.+.|.+++|+|++..
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQ 231 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSE
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCE
Confidence 35555554444 44445677899999995 479999999999999999853 3456777889999999999999884
Q ss_pred EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee--CCCcEEEEeCC
Q psy4578 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS--ADKTVALWDLR 759 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs--~Dg~I~IWDl~ 759 (860)
+++|+.||. |++||++++ ..+..+.+|...|.+++|+|++..++++|+ .||.|++||++
T Consensus 232 -l~s~~~d~~---------------v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 232 -LASGGNDNV---------------VQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp -EEEEETTSC---------------EEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred -EEEEeCCCe---------------EEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 899999998 999999986 667778889999999999999988888876 79999999999
Q ss_pred CCceeeEEeccCCCceEEEEEcCCCCCEEEEE--ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tg--s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
++.. +..+. +...|.+++|+|+++. ++++ +.||.|++||+.+... .......+|.+.|.+++|
T Consensus 293 ~~~~-~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~------------~~~~~~~~h~~~v~~~~~ 357 (401)
T 4aez_A 293 TGAR-VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGL------------TKQVDIPAHDTRVLYSAL 357 (401)
T ss_dssp TCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEE------------EEEEEEECCSSCCCEEEE
T ss_pred CCCE-EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCccc------------eeEEEecCCCCCEEEEEE
Confidence 9876 56664 6788999999999986 5563 3899999999887322 233446689999999999
Q ss_pred ccCCCeEEEEEeCCCeEee
Q psy4578 838 NPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 spdg~~Llasgs~Dg~IrI 856 (860)
+|+|++ +++++.||.|++
T Consensus 358 s~dg~~-l~s~~~dg~i~i 375 (401)
T 4aez_A 358 SPDGRI-LSTAASDENLKF 375 (401)
T ss_dssp CTTSSE-EEEECTTSEEEE
T ss_pred CCCCCE-EEEEeCCCcEEE
Confidence 999994 779999999886
No 76
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=1.1e-22 Score=229.07 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=147.9
Q ss_pred hhhhhcccceeeeEeec-------cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578 615 CQLLDKLRLLIDVAWHL-------LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 687 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp-------~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs 687 (860)
..+.+|.+.|++++|+| .++++||+|+.|++|+|||+.++ .+.....+|...|.+++|+|++..++++|+
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecC
Confidence 34567889999999987 36789999999999999999874 445566778899999999999887899999
Q ss_pred CCCceeeecccccccCCCcEEEEeCCCCCCCCC----------------------eeeecCCCCCeEEEEEc-CCCCcEE
Q psy4578 688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP----------------------SHTVDAHTAEVNCLSFN-PYSEYIL 744 (860)
Q Consensus 688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~----------------------~~~~~~h~~~I~sl~~s-p~g~~ll 744 (860)
.||+ |++||++++..... .....+|...+.++.|+ |++. .+
T Consensus 207 ~d~~---------------v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l 270 (393)
T 4gq1_A 207 RNGN---------------IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GI 270 (393)
T ss_dssp TTSE---------------EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EE
T ss_pred CCCE---------------EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EE
Confidence 9999 88888876532111 11234688889999987 7888 48
Q ss_pred EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE------------------cC-CCCCEEEEEECCCcEEEEECCCC
Q psy4578 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW------------------SP-HNETILASSGTDRRLHVWDLSKI 805 (860)
Q Consensus 745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f------------------sp-~g~~lL~tgs~Dg~I~iWdl~~~ 805 (860)
++++.|+++++||+..... ...+..|...+..+.+ +| .+..++++|+.||.|++||+.++
T Consensus 271 ~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp EEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred EEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 9999999999999987654 3444444444333333 32 34445777889999999999874
Q ss_pred CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP 857 (860)
Q Consensus 806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~ 857 (860)
.. .....+|..+|.+++|+|||++ ||++++||++.|+
T Consensus 350 ~~--------------~~~~~~~~~~V~svafspdG~~-LA~as~~Gv~lvr 386 (393)
T 4gq1_A 350 DS--------------NSIPIQLGMPIVDFCWHQDGSH-LAIATEGSVLLTR 386 (393)
T ss_dssp TC--------------CEEEEECSSCEEEEEECTTSSE-EEEEESSEEEEEE
T ss_pred cE--------------EEEecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEE
Confidence 32 3344568889999999999995 7789999987664
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=1.7e-21 Score=211.41 Aligned_cols=210 Identities=16% Similarity=0.280 Sum_probs=172.9
Q ss_pred EEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578 603 VMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 679 (860)
Q Consensus 603 il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 679 (860)
.+.+|+....+ ......+...|.+++|+| ++.++++++.||.|++||+.++ .....+..|...+.+++|+|++
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC---ceeeeeecccCceEEEEECCCC
Confidence 45555554443 333445667899999998 7889999999999999999874 5567778899999999999999
Q ss_pred CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759 (860)
Q Consensus 680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~ 759 (860)
.. +++++.||. |++||++++ ..+..+ .|...+.+++|+|++.. +++|+.||.|++||++
T Consensus 196 ~~-l~~~~~dg~---------------i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 196 TK-LWTGGLDNT---------------VRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVN 254 (337)
T ss_dssp SE-EEEEETTSE---------------EEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred CE-EEEEecCCc---------------EEEEECCCC---ceEeee-cCCCceEEEEECCCCCE-EEEEcCCCcEEEEECC
Confidence 85 889999998 999999876 334443 47889999999999995 8899999999999999
Q ss_pred CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839 (860)
Q Consensus 760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp 839 (860)
+... ..+..|...|.+++|+|+++. +++++.||.|++||+.+.... ....|...|.+++|+|
T Consensus 255 ~~~~--~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~---------------~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 255 KPDK--YQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASI---------------FQSKESSSVLSCDISV 316 (337)
T ss_dssp SSCE--EEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEE---------------EEEECSSCEEEEEECT
T ss_pred CCCe--EEEcCCccceeEEEECCCCCE-EEEecCCCcEEEEECCCCeEE---------------EEecCCCcEEEEEECC
Confidence 8764 567789999999999999985 889999999999999874321 2235788999999999
Q ss_pred CCCeEEEEEeCCCeEee
Q psy4578 840 NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 840 dg~~Llasgs~Dg~IrI 856 (860)
++++ +++++.||.|++
T Consensus 317 ~~~~-l~~~~~dg~i~i 332 (337)
T 1gxr_A 317 DDKY-IVTGSGDKKATV 332 (337)
T ss_dssp TSCE-EEEEETTSCEEE
T ss_pred CCCE-EEEecCCCeEEE
Confidence 9995 778889998875
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=6.5e-22 Score=220.89 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=173.2
Q ss_pred EEEeeccchhh-------hhhhhhcccceeeeEeeccC----C---cEEEEEeCCCcEEEEEcCCCCccc--CeeeccCC
Q psy4578 603 VMYLENKTRAQ-------ICQLLDKLRLLIDVAWHLLH----E---SLFGSVADDQKLMIWDTRSHNVSK--PSHTVDAH 666 (860)
Q Consensus 603 il~l~n~~~~~-------l~~l~~~~~~V~~v~~sp~~----~---~~lasgs~DG~I~IWd~~~~~~~~--~~~~~~~h 666 (860)
.+.+|+..... +..+..|...|.+++|+| + + .+|++|+.||.|++||+.++.... ....+..|
T Consensus 37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 115 (397)
T 1sq9_A 37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 115 (397)
T ss_dssp EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS
T ss_pred EEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccc
Confidence 35555555544 555567788999999998 5 7 899999999999999998753200 15667777
Q ss_pred -----CCCeeEEEEc----cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCC------CCCCC--Ceeee-----
Q psy4578 667 -----TAEVNCLSFN----PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRS------HNVSK--PSHTV----- 724 (860)
Q Consensus 667 -----~~~V~~l~~s----p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~------~~~~~--~~~~~----- 724 (860)
...|.+++|+ |++..++++|+.||. |++||+.+ +.... ....+
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~---------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (397)
T 1sq9_A 116 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT---------------TYIWKFHPFADESNSLTLNWSPTLELQGTVE 180 (397)
T ss_dssp CTTGGGSCEEEEEEECCC----CEEEEEEETTSC---------------EEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred ccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc---------------EEEEeCCccccccccceeeccCcceeeeeec
Confidence 5899999999 999854889999998 99999987 53221 11144
Q ss_pred --cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---C---CCceEEEEEcCCCCCEEEEEECC--
Q psy4578 725 --DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---H---KDEIFQVQWSPHNETILASSGTD-- 794 (860)
Q Consensus 725 --~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h---~~~V~~l~fsp~g~~lL~tgs~D-- 794 (860)
..|...|.+++|+|++ ++++|+.||.|++||+++... +..+.. | ...|.+++|+|++.+ |++++.|
T Consensus 181 ~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~~~d~~ 256 (397)
T 1sq9_A 181 SPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNS 256 (397)
T ss_dssp CSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETT
T ss_pred cccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce-eEEEeccccccccCCccceEEECCCCCE-EEEEecCCC
Confidence 4588999999999999 599999999999999998876 778888 8 999999999999985 8899999
Q ss_pred -CcEEEEECCCCCcccccccccCCCCccEEEecC-------------ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 795 -RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-------------HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 795 -g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-------------h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|.|++||+++.. .+..+.+ |...|.+++|+|++++ +++++.|+.|++
T Consensus 257 ~g~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i 317 (397)
T 1sq9_A 257 FGCITLYETEFGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRF 317 (397)
T ss_dssp EEEEEEEETTTCC--------------EEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEE
T ss_pred CceEEEEECCCCc--------------ccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEE
Confidence 999999998743 3344445 8999999999999995 778999999886
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.89 E-value=9.1e-22 Score=217.18 Aligned_cols=231 Identities=17% Similarity=0.127 Sum_probs=173.9
Q ss_pred EEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-eeccCCCCCeeEEEEccCC
Q psy4578 604 MYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNPYS 679 (860)
Q Consensus 604 l~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g 679 (860)
+.+|+....+ ......+...|.+++|+| ++.++++|+.||.|++||+..+...... ....+|...|++++|+|++
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 4455554443 333456778999999998 7889999999999999999875422222 2336789999999999999
Q ss_pred CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC---------------CCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH---------------NVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744 (860)
Q Consensus 680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~---------------~~~~~~~~~~~h~~~I~sl~~sp~g~~ll 744 (860)
.. +++|+.||. |++||++.. .....+..+.+|...|.+++|+|++.+ +
T Consensus 155 ~~-l~~~~~dg~---------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l 217 (372)
T 1k8k_C 155 VL-LAAGSCDFK---------------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-V 217 (372)
T ss_dssp SE-EEEEETTSC---------------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-E
T ss_pred CE-EEEEcCCCC---------------EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE-E
Confidence 84 899999998 999996521 112566777789999999999999984 9
Q ss_pred EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC--CC--ccccccccc-----
Q psy4578 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--IG--EEQSTEDAE----- 815 (860)
Q Consensus 745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~--~~--~~~~~~~~~----- 815 (860)
++|+.||.|++||++++.. +..+..|...|.+++|+|++. ++++| .||.|++|++.. +. .........
T Consensus 218 ~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred EEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 9999999999999998886 788889999999999999997 35555 999999999987 31 111100000
Q ss_pred -----------CCCCccE------EEe-cCccCceEEEEEcc-CC---CeEEEEEeCCCeEee
Q psy4578 816 -----------DGPPELL------FIH-GGHTAKISDFSWNP-NE---PWVICSVSEDNIMQK 856 (860)
Q Consensus 816 -----------~~~~~~i------~~~-~~h~~~I~~i~~sp-dg---~~Llasgs~Dg~IrI 856 (860)
....... ... .+|.+.|++++|++ +| . ++++|+.||.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~ 356 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSI 356 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEE
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEE
Confidence 0001111 222 48999999999875 54 6 6889999999986
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-21 Score=214.38 Aligned_cols=203 Identities=20% Similarity=0.342 Sum_probs=171.5
Q ss_pred hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
...+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++++ +++++.||.
T Consensus 25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~-- 97 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADYS-- 97 (369)
T ss_dssp EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTTE--
T ss_pred cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCE-EEEEeCCCe--
Confidence 344567889999999998 7889999999999999999884 557788899999999999999985 889999998
Q ss_pred eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCce-----
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKL----- 763 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~----- 763 (860)
|++||+.++ ..+..+. |...|.+++|+|++.+ +++++.+ |.|++||++....
T Consensus 98 -------------i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 98 -------------IKLWDVSNG---QCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp -------------EEEEETTTC---CEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred -------------EEEEECCCC---cEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeec
Confidence 999999886 4555555 8899999999999995 8888888 9999999976542
Q ss_pred -----eeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578 764 -----KLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 836 (860)
Q Consensus 764 -----~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~ 836 (860)
....+..|.. .+.+++|+|+++. +++++.||.|++||+++. ...+.....|...|.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEE
Confidence 2444556666 9999999999985 889999999999999862 234566678999999999
Q ss_pred EccCCCeEEEEEeCCCeEee
Q psy4578 837 WNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 837 ~spdg~~Llasgs~Dg~IrI 856 (860)
|+|++.+ +++++.|+.|++
T Consensus 226 ~~~~~~~-l~~~~~d~~i~v 244 (369)
T 3zwl_B 226 FSPDLTY-FITSSRDTNSFL 244 (369)
T ss_dssp ECTTSSE-EEEEETTSEEEE
T ss_pred ECCCCCE-EEEecCCceEEE
Confidence 9999995 678899998876
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=224.77 Aligned_cols=209 Identities=15% Similarity=0.279 Sum_probs=159.3
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--------ccCeeeccCCC------------CCeeEEEEcc
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--------SKPSHTVDAHT------------AEVNCLSFNP 677 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--------~~~~~~~~~h~------------~~V~~l~~sp 677 (860)
..+.+.|++++|+| ++.+|++|+.||.|+|||+.++.. ......+.+|. ..|++++|+|
T Consensus 25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 45678999999998 899999999999999999987531 11356778898 8899999999
Q ss_pred CCC-eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC------------------------------------CC
Q psy4578 678 YSE-YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS------------------------------------KP 720 (860)
Q Consensus 678 ~g~-~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~------------------------------------~~ 720 (860)
++. ..+++|+.||+ |++||+.++... ..
T Consensus 104 ~~~~~~l~s~s~d~~---------------i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKT---------------IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp CCSSSEEEEEECSSC---------------EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred CCCcceEEEeCCCCe---------------EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 973 25889999999 777776542100 00
Q ss_pred eee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-------EeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578 721 SHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-------SFESHKDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 721 ~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-------~~~~h~~~V~~l~fsp~g~~lL~tgs 792 (860)
... ..+|...|.+++|+|++.. +++| .||.|++||++....... .+.+|...|++++|+|++..+|++|+
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred eEEeccCCCcceEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence 012 3679999999999999984 8888 799999999995443233 25689999999999999944699999
Q ss_pred CCCcEEEEECCCCCcccccccccCCCCccEEEecCcc------------CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT------------AKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~------------~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.||.|++||+++..... ..+..+.+|. +.|.+++|+|+|++ +++++. +.|++
T Consensus 247 ~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~i 310 (447)
T 3dw8_B 247 SKGTIRLCDMRASALCD----------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKV 310 (447)
T ss_dssp TTSCEEEEETTTCSSSC----------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEE
T ss_pred CCCeEEEEECcCCcccc----------ceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEE
Confidence 99999999999865321 1123334444 49999999999995 667777 88886
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.88 E-value=2.3e-21 Score=237.85 Aligned_cols=230 Identities=16% Similarity=0.231 Sum_probs=189.7
Q ss_pred EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+..... +..+..|.+.|.+++|+| ++.+|++|+.||.|++||+.++ ..+..+.+|.+.|++++|+|++++
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~ 111 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY 111 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE
T ss_pred EEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEEEEEEeCCCCE
Confidence 45566654444 444456788999999999 7889999999999999999885 556777889999999999999995
Q ss_pred EEEEEeCCCceeeeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecC-CCCCe
Q psy4578 682 ILATGSADKTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEV 731 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I 731 (860)
+++|+.||.+.+|+.... +..+|.|++||+.++ .....+.. +...+
T Consensus 112 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~~v 187 (814)
T 3mkq_A 112 -VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGV 187 (814)
T ss_dssp -EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCC
T ss_pred -EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cceeEEecCCCCCE
Confidence 889999999999986543 235788999999876 33344444 44899
Q ss_pred EEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578 732 NCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 809 (860)
Q Consensus 732 ~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~ 809 (860)
.+++|+| ++. .+++|+.||.|++||++++.. +..+.+|...|.+++|+|+|+ ++++|+.||.|++||+.+.
T Consensus 188 ~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---- 260 (814)
T 3mkq_A 188 NYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY---- 260 (814)
T ss_dssp CEEEECCSTTCC-EEEEECTTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC----
T ss_pred EEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC----
Confidence 9999999 888 599999999999999999886 788889999999999999998 4899999999999999873
Q ss_pred ccccccCCCCccEEEecCccCceEEEEEccCCCeE-EEEEeCCCeEeec
Q psy4578 810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV-ICSVSEDNIMQKP 857 (860)
Q Consensus 810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L-lasgs~Dg~IrI~ 857 (860)
........|...|.+++|+|+|..+ ++++++++.+.+.
T Consensus 261 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 261 ----------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp ----------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred ----------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 3456667788999999999999754 7778777776654
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.88 E-value=1.7e-21 Score=219.27 Aligned_cols=200 Identities=20% Similarity=0.333 Sum_probs=165.1
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccccc
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
...++++|....++++|+.||.|+||++... ........+.+|.+.|++++|+| ++. ++++|+.||+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~---------- 105 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCT---------- 105 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSE----------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCe----------
Confidence 4568888855556667899999999999653 22244566789999999999999 666 6999999998
Q ss_pred cCCCcEEEEeCCCCCCC----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCce
Q psy4578 702 NYDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEI 775 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V 775 (860)
|++||+.++... ..+..+.+|...|.+++|+|++..++++|+.||.|++||++++.. +..+ .+|...|
T Consensus 106 -----v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 179 (402)
T 2aq5_A 106 -----VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTI 179 (402)
T ss_dssp -----EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCE
T ss_pred -----EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCce
Confidence 999999876321 456778899999999999999865799999999999999999886 7777 7899999
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-cCccCc-eEEEEEccCCCeEEEEE---eC
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAK-ISDFSWNPNEPWVICSV---SE 850 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~-~~h~~~-I~~i~~spdg~~Llasg---s~ 850 (860)
.+++|+|+|.. |++|+.||.|++||++++. .+... .+|.+. +.+++|+|++. ++++| +.
T Consensus 180 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~ 243 (402)
T 2aq5_A 180 YSVDWSRDGAL-ICTSCRDKRVRVIEPRKGT--------------VVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMS 243 (402)
T ss_dssp EEEEECTTSSC-EEEEETTSEEEEEETTTTE--------------EEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTC
T ss_pred EEEEECCCCCE-EEEEecCCcEEEEeCCCCc--------------eeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCC
Confidence 99999999986 8899999999999998733 34444 567765 89999999988 56677 78
Q ss_pred CCeEee
Q psy4578 851 DNIMQK 856 (860)
Q Consensus 851 Dg~IrI 856 (860)
|+.|++
T Consensus 244 d~~i~i 249 (402)
T 2aq5_A 244 ERQVAL 249 (402)
T ss_dssp CEEEEE
T ss_pred CceEEE
Confidence 888876
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=222.35 Aligned_cols=199 Identities=20% Similarity=0.334 Sum_probs=152.4
Q ss_pred cceeeeEeeccCC-cEEEEEeCCCcEEEEEcCCCCcc------------------------------------cCe-eec
Q psy4578 622 RLLIDVAWHLLHE-SLFGSVADDQKLMIWDTRSHNVS------------------------------------KPS-HTV 663 (860)
Q Consensus 622 ~~V~~v~~sp~~~-~~lasgs~DG~I~IWd~~~~~~~------------------------------------~~~-~~~ 663 (860)
+.|++++|+|+++ ..+++|+.||.|++||+.++... .+. ...
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 7899999999433 78999999999999998752110 000 113
Q ss_pred cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee-------eecCCCCCeEEEEE
Q psy4578 664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-------TVDAHTAEVNCLSF 736 (860)
Q Consensus 664 ~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-------~~~~h~~~I~sl~~ 736 (860)
.+|...|++++|+|++.. +++| .||. |++||+++.. ..+. .+.+|...|++++|
T Consensus 174 ~~h~~~v~~~~~~~~~~~-l~s~-~d~~---------------i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (447)
T 3dw8_B 174 NAHTYHINSISINSDYET-YLSA-DDLR---------------INLWHLEITD--RSFNIVDIKPANMEELTEVITAAEF 234 (447)
T ss_dssp SCCSSCCCEEEECTTSSE-EEEE-CSSE---------------EEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred cCCCcceEEEEEcCCCCE-EEEe-CCCe---------------EEEEECCCCC--ceeeeeecccccccccCcceEEEEE
Confidence 679999999999999985 7777 7998 9999988431 1222 36689999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCce---eeEEeccCCC------------ceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKL---KLHSFESHKD------------EIFQVQWSPHNETILASSGTDRRLHVWD 801 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~---~~~~~~~h~~------------~V~~l~fsp~g~~lL~tgs~Dg~I~iWd 801 (860)
+|++..++++|+.||.|++||++++.. ....+.+|.. .|.+++|+|+|++ |++++. |.|++||
T Consensus 235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWD 312 (447)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEE
T ss_pred CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEe
Confidence 999844699999999999999998764 1466777775 8999999999985 788888 9999999
Q ss_pred CCC-CCcccccccccCCCCccEEEecCccC---------------ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 802 LSK-IGEEQSTEDAEDGPPELLFIHGGHTA---------------KISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 802 l~~-~~~~~~~~~~~~~~~~~i~~~~~h~~---------------~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+++ ..... .+.+|.. .+..++|+|+|++ +++|+.||.|++
T Consensus 313 ~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~i 368 (447)
T 3dw8_B 313 LNMENRPVE--------------TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRM 368 (447)
T ss_dssp TTCCSSCSC--------------CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEE
T ss_pred CCCCccccc--------------eeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEE
Confidence 986 33322 2223332 1345999999996 689999999986
No 85
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.6e-21 Score=214.77 Aligned_cols=228 Identities=12% Similarity=0.040 Sum_probs=164.7
Q ss_pred eeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC------Ccc
Q psy4578 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH------NVS 657 (860)
Q Consensus 584 l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~------~~~ 657 (860)
.....++.|..+|. +.+|+....+....+. ...|.++.|+|. +++|+.||+|++|+.... ...
T Consensus 46 ~d~~~l~sg~~Dg~------v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 46 YDKWVCMCRCEDGA------LHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEEEEETTE------EEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CCCCEEEEECCCCc------EEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 34445555555543 5566655555444333 567999999983 999999999999987631 011
Q ss_pred cCeeec-cCCCCCeeEEEEcc--CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEE
Q psy4578 658 KPSHTV-DAHTAEVNCLSFNP--YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNC 733 (860)
Q Consensus 658 ~~~~~~-~~h~~~V~~l~~sp--~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~s 733 (860)
..+... .+|.+.|.+++|+| ++.+ +++|+.||+ |++||++++ ...... ..|...|++
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~---------------i~~wd~~~~---~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGT---------------IGFQSYEDD---SQYIVHSAKSDVEYSS 175 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCC---------------EEEEESSSS---CEEEEECCCSSCCCCE
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCc---------------EEEEECCCC---cEEEEEecCCCCceEE
Confidence 212222 36778999999999 8885 899999999 999999986 334433 345568999
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578 734 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812 (860)
Q Consensus 734 l~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~ 812 (860)
++|+|+|. ++++|+.||.|++||++++......+.. |.+.|++++|+|+|.+ |++++ |+.|++||+++......+.
T Consensus 176 ~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 176 GVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-MVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-EEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred EEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCCCCcceeec
Confidence 99999999 5999999999999999998873367787 9999999999999985 78888 5599999999865543322
Q ss_pred cccCCCCccEEEecCccCce--EEEEEccCCCeEEEEEeC-CCeEee
Q psy4578 813 DAEDGPPELLFIHGGHTAKI--SDFSWNPNEPWVICSVSE-DNIMQK 856 (860)
Q Consensus 813 ~~~~~~~~~i~~~~~h~~~I--~~i~~spdg~~Llasgs~-Dg~IrI 856 (860)
. +..|...+ .+++|+|+|++++ +++. |+.++|
T Consensus 253 ~-----------~~~~~~~~~~~~~~~~~~g~~l~-~~s~~d~~i~v 287 (343)
T 3lrv_A 253 T-----------YTIPEFKTGTVTYDIDDSGKNMI-AYSNESNSLTI 287 (343)
T ss_dssp C-----------CBC-----CCEEEEECTTSSEEE-EEETTTTEEEE
T ss_pred c-----------cccccccccceEEEECCCCCEEE-EecCCCCcEEE
Confidence 1 11223333 4699999999755 5555 888886
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.2e-21 Score=204.41 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=174.6
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
..+.+|.+.|++++| | ++.++++|+.||.|++||+.++ .....+..|...|.+++|+|++.. +++|+.||.+.+
T Consensus 12 ~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~ 85 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKEL-LLFGGKDTMING 85 (313)
T ss_dssp EEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTE-EEEEETTSCEEE
T ss_pred HHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCE-EEEecCCCeEEE
Confidence 334567889999999 6 7888999999999999999773 456667789999999999999984 899999999988
Q ss_pred eccccc----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEE
Q psy4578 695 VEEEEE----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILA 745 (860)
Q Consensus 695 ~~~~~~----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~lla 745 (860)
|+.... +..+|.|++|| .. .....+..|...+.+++|+| ++. .++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~---~~~~~~~~~~~~v~~~~~~~~~~~-~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG---SLVYNLQAHNASVWDAKVVSFSEN-KFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT---EEEEEEECCSSCEEEEEEEETTTT-EEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC---cEEEecccCCCceeEEEEccCCCC-EEE
Confidence 875432 24588999999 22 56677888999999999999 666 599
Q ss_pred EeeCCCcEEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578 746 TGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 824 (860)
Q Consensus 746 sgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~ 824 (860)
+|+.||.|++||.. .. ...+.. |...+.+++|+|++. +++|+.||.|++||+++. ..+..
T Consensus 160 ~~~~d~~i~i~d~~--~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~--------------~~~~~ 220 (313)
T 3odt_A 160 TASADKTIKLWQND--KV-IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG--------------DVLRT 220 (313)
T ss_dssp EEETTSCEEEEETT--EE-EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC--------------CEEEE
T ss_pred EEECCCCEEEEecC--ce-EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch--------------hhhhh
Confidence 99999999999933 33 556666 899999999999996 789999999999999873 34566
Q ss_pred ecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+.+|.+.|++++|+|++. +++++.||.|++
T Consensus 221 ~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~i 250 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNGD--IVSCGEDRTVRI 250 (313)
T ss_dssp EECCSSCEEEEEECTTSC--EEEEETTSEEEE
T ss_pred hhcCCceEEEEEEecCCC--EEEEecCCEEEE
Confidence 678999999999999994 668899999886
No 87
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=238.91 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=174.3
Q ss_pred hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578 614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK 690 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg 690 (860)
...+.+|.+.|++++|+|+ ++.++++|+.||.|++||+.++. ......+.+|...|++++|+|+ +. .+++|+.||
T Consensus 46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg 123 (753)
T 3jro_A 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDG 123 (753)
T ss_dssp EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-ccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCC
Confidence 4445568889999999973 28899999999999999998753 1256677889999999999998 77 599999999
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC-------------CCcEEEEeeCCCcEEEEe
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-------------SEYILATGSADKTVALWD 757 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~-------------g~~llasgs~Dg~I~IWD 757 (860)
. |++||++++.. .....+.+|...|.+++|+|. +. ++++|+.||.|++||
T Consensus 124 ~---------------I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd 186 (753)
T 3jro_A 124 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK 186 (753)
T ss_dssp E---------------EEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEE
T ss_pred c---------------EEEEEeecCCC-cceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEe
Confidence 8 99999988643 344567789999999999994 66 499999999999999
Q ss_pred CCCCc---eeeEEeccCCCceEEEEEcCC---CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578 758 LRNLK---LKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831 (860)
Q Consensus 758 l~~~~---~~~~~~~~h~~~V~~l~fsp~---g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~ 831 (860)
++++. .....+.+|...|++++|+|+ +. ++++|+.||.|++||+++...... .......+|.+.
T Consensus 187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~---------~~~~~~~~~~~~ 256 (753)
T 3jro_A 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDV 256 (753)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCB---------CCBSSSSCCSSC
T ss_pred ccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcce---------eEEeccCCCCCc
Confidence 98774 235677889999999999999 66 599999999999999988542211 122233468889
Q ss_pred eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 832 ISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 832 I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|++++|+|+|++ +++|+.||.|++
T Consensus 257 v~~l~~spdg~~-l~s~s~Dg~I~v 280 (753)
T 3jro_A 257 LWRASWSLSGNV-LALSGGDNKVTL 280 (753)
T ss_dssp CCCEEECTTTCC-EEEECSSSCEEC
T ss_pred eEEEEEcCCCCE-EEEEcCCCEEEE
Confidence 999999999995 778889998886
No 88
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.87 E-value=3e-21 Score=212.59 Aligned_cols=173 Identities=21% Similarity=0.310 Sum_probs=146.5
Q ss_pred EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+...... ..+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++ .....+.+|...|++++|+|++..
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNA 240 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSE
T ss_pred cEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC---eeEEEEcCCcCCEEEEEEcCCCCE
Confidence 345566555443 34456778999999998 7889999999999999999874 556788899999999999999985
Q ss_pred EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~ 759 (860)
+++|+.||+ |++||++++ ..+..+. .+...|++++|+|+|.+ +++|+.||.|++||+.
T Consensus 241 -l~s~s~d~~---------------v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 241 -FATGSDDAT---------------CRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDAL 300 (340)
T ss_dssp -EEEEETTSC---------------EEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSEEEEEETT
T ss_pred -EEEEcCCCc---------------EEEEECCCC---cEEEEEccCCcccceEEEEECCCCCE-EEEECCCCeEEEEEcc
Confidence 899999999 999999876 3333332 33457999999999994 9999999999999999
Q ss_pred CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801 (860)
Q Consensus 760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd 801 (860)
+... ...+.+|.+.|.+++|+|+|.+ |++|+.||+|++||
T Consensus 301 ~~~~-~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~i~iWd 340 (340)
T 1got_B 301 KADR-AGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340 (340)
T ss_dssp TCCE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred cCcE-eeEeecCCCcEEEEEEcCCCCE-EEEEcCCccEEecC
Confidence 8876 7888999999999999999986 89999999999997
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=2.3e-20 Score=213.63 Aligned_cols=210 Identities=22% Similarity=0.406 Sum_probs=173.2
Q ss_pred EEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc--CCC
Q psy4578 604 MYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSE 680 (860)
Q Consensus 604 l~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g~ 680 (860)
+.+|+....+ +..+.+|.+.|.+++|++ ++ .+++|+.||+|++||+.++ .....+.+|...|.+++|++ ++.
T Consensus 144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 144 IRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIK 218 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEEESSSCE
T ss_pred EEEEECCCCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC---cEEEEECCCCCccEEEEEecCCCCC
Confidence 4555554444 344456889999999997 34 9999999999999999884 55778889999999999995 445
Q ss_pred eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCC--------------------CeeeecCCCCCeEEEEEcCCC
Q psy4578 681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK--------------------PSHTVDAHTAEVNCLSFNPYS 740 (860)
Q Consensus 681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~--------------------~~~~~~~h~~~I~sl~~sp~g 740 (860)
.+++|+.||+ |++||+.+..... .+..+.+|...|.++ ++++
T Consensus 219 -~l~s~s~d~~---------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 219 -YIVTGSRDNT---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp -EEEEEETTSC---------------EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred -EEEEEcCCCc---------------EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 6999999999 8999988753211 145677899998887 5567
Q ss_pred CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820 (860)
Q Consensus 741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~ 820 (860)
. .+++|+.||.|++||++++.. +..+.+|...|.+++|+|+++. +++|+.||.|++||+++ ..
T Consensus 281 ~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~--------------~~ 343 (464)
T 3v7d_B 281 N-IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLEN--------------GE 343 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTT--------------TE
T ss_pred C-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCC--------------Cc
Confidence 7 599999999999999999886 7888999999999999999985 89999999999999987 34
Q ss_pred cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++..+.+|...|.+++|++ . .+++++.||.|++
T Consensus 344 ~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~v 376 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRG 376 (464)
T ss_dssp EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEE
T ss_pred EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEE
Confidence 5667788999999999983 5 5889999999986
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.6e-21 Score=216.74 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=163.1
Q ss_pred cccceeeeEeeccCCcE-EEEEeCCCcEEEEEcC--CCCcccCeeecc--CCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 620 KLRLLIDVAWHLLHESL-FGSVADDQKLMIWDTR--SHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~-lasgs~DG~I~IWd~~--~~~~~~~~~~~~--~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+.+.|.+++|+| ++.+ +++|+.||.|++||+. ++ ..+..+. .|...|++++|+|++.+ +++|+.+|.
T Consensus 101 ~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~~g~--- 172 (450)
T 2vdu_B 101 IYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKRPNAISIAEDDTT-VIIADKFGD--- 172 (450)
T ss_dssp CCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred cCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCCceEEEEcCCCCE-EEEEeCCCc---
Confidence 334799999999 5666 5999999999999998 54 3344443 56789999999999985 888988988
Q ss_pred ecccccccCCCcEEEEeCCCCCCCC-CeeeecCCCCCeEEEEEcCC---CCcEEEEeeCCCcEEEEeCCCCceeeEE-ec
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSFNPY---SEYILATGSADKTVALWDLRNLKLKLHS-FE 769 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~-~~~~~~~h~~~I~sl~~sp~---g~~llasgs~Dg~I~IWDl~~~~~~~~~-~~ 769 (860)
+++|++.++.... ....+.+|...|++++|+|+ +. +|++|+.|+.|++||++++.. +.. +.
T Consensus 173 ------------v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~-~~~~~~ 238 (450)
T 2vdu_B 173 ------------VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI-VDKWLF 238 (450)
T ss_dssp ------------EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC-EEEECC
T ss_pred ------------EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce-eeeeec
Confidence 9999998875433 44467789999999999999 77 599999999999999998886 444 66
Q ss_pred cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC----------CCCc-cEEEecCccCceEEEEEc
Q psy4578 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------GPPE-LLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~----------~~~~-~i~~~~~h~~~I~~i~~s 838 (860)
+|...|++++|+ ++++ |++|+.|+.|++||+.++.....+..... .+.. .......+...|.+++|+
T Consensus 239 ~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCSSCEEEEEEC-STTE-EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 899999999999 8875 89999999999999998665433321100 0000 000001334679999999
Q ss_pred cCCCeEEEEEeCCCeEee
Q psy4578 839 PNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 839 pdg~~Llasgs~Dg~IrI 856 (860)
|+++++++++..|+.|+|
T Consensus 317 ~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIII 334 (450)
T ss_dssp SSSSEEEEEETTCSEEEE
T ss_pred CCCCEEEEEECCCCeEEE
Confidence 999976655558888876
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-21 Score=235.92 Aligned_cols=208 Identities=19% Similarity=0.339 Sum_probs=173.8
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFE 694 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~ 694 (860)
+.+|.+.|++++|+| ++.++++|+.||.|++||+.++. ......+.+|.+.|++++|+|+ ++ .+++|+.||.
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~--- 78 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK--- 78 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSC---
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCe---
Confidence 457789999999998 78899999999999999997432 3566778899999999999987 76 5999999999
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEeccC
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFESH 771 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h 771 (860)
|++||+.++.. .....+.+|...|++++|+|+ +. ++++|+.||.|++||+++... ....+.+|
T Consensus 79 ------------I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 79 ------------VLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp ------------EEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred ------------EEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 99999987621 256777889999999999999 77 599999999999999988732 24567789
Q ss_pred CCceEEEEEcCC-------------CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578 772 KDEIFQVQWSPH-------------NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 772 ~~~V~~l~fsp~-------------g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s 838 (860)
...|.+++|+|. +.. +++|+.||.|++||+++.... ..+.....+|.+.|++++|+
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~-l~sgs~dg~I~iwd~~~~~~~----------~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCC-EEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEEC
T ss_pred CCceEEEEecCcccccccccccCCCCCE-EEEEECCCeEEEEeccCCccc----------ceeeeeecCCCCcEEEEEec
Confidence 999999999994 665 899999999999999874321 24556778999999999999
Q ss_pred cC---CCeEEEEEeCCCeEee
Q psy4578 839 PN---EPWVICSVSEDNIMQK 856 (860)
Q Consensus 839 pd---g~~Llasgs~Dg~IrI 856 (860)
|+ +. ++++|+.||.|++
T Consensus 214 p~~~~~~-~l~s~s~Dg~I~i 233 (753)
T 3jro_A 214 PTVLLRS-YLASVSQDRTCII 233 (753)
T ss_dssp CCCSSSE-EEEEEESSSCEEE
T ss_pred cCCCCCC-EEEEEecCCEEEE
Confidence 99 66 6889999999886
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.86 E-value=5.4e-21 Score=234.55 Aligned_cols=201 Identities=19% Similarity=0.381 Sum_probs=173.3
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++ ..+..+.+|.+.|++++|+|+++. +++|+.||.
T Consensus 9 ~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~----- 78 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNW-IIVGSDDFR----- 78 (814)
T ss_dssp EEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTE-EEEEETTSE-----
T ss_pred eecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCE-EEEEeCCCe-----
Confidence 456778999999999 7899999999999999999884 556778899999999999999985 899999998
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 776 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 776 (860)
|++||+.++ ..+..+.+|.+.|++++|+|++.+ +++|+.||.|++||++++......+.+|...|.
T Consensus 79 ----------i~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 79 ----------IRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp ----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred ----------EEEEECCCC---cEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 999999887 667788899999999999999995 889999999999999987555778889999999
Q ss_pred EEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc--CCCeEEEEEeCCCe
Q psy4578 777 QVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNI 853 (860)
Q Consensus 777 ~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp--dg~~Llasgs~Dg~ 853 (860)
+++|+| ++. .+++|+.||.|++||+.+.... ......+...|..++|+| ++. ++++++.||.
T Consensus 145 ~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~ 209 (814)
T 3mkq_A 145 CVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPN-------------FTLTTGQERGVNYVDYYPLPDKP-YMITASDDLT 209 (814)
T ss_dssp EEEEETTEEE-EEEEEETTSEEEEEETTCSSCS-------------EEEECCCTTCCCEEEECCSTTCC-EEEEECTTSE
T ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCcce-------------eEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCE
Confidence 999999 665 5899999999999999764322 222234558899999999 888 5779999998
Q ss_pred Eee
Q psy4578 854 MQK 856 (860)
Q Consensus 854 IrI 856 (860)
|++
T Consensus 210 i~~ 212 (814)
T 3mkq_A 210 IKI 212 (814)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=206.09 Aligned_cols=201 Identities=14% Similarity=0.246 Sum_probs=160.8
Q ss_pred hhcccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC---CCeEEEEEeCCCc
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY---SEYILATGSADKT 691 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g~~llasgs~Dg~ 691 (860)
.+|.+.|.+++|+|++..++++|+. ||.|++||+.++... .....+|...|++++|+|+ +. ++++|+.||.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~ 91 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--LLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGN 91 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--EEEEEEESSCEEEEECTTCCTTTC-CEEEEETTSC
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--ceeeecccCcEEEEEEcCCCCCCc-eEEEecCCCe
Confidence 3477899999999965567777876 999999999875321 1222378999999999998 46 5899999998
Q ss_pred eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE------cCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578 692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF------NPYSEYILATGSADKTVALWDLRNLKLKL 765 (860)
Q Consensus 692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~------sp~g~~llasgs~Dg~I~IWDl~~~~~~~ 765 (860)
|++||+.++. ..+..+.+|...|.+++| +|++. .+++|+.||.|++||+++.....
T Consensus 92 ---------------i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 92 ---------------LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp ---------------EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS
T ss_pred ---------------EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc
Confidence 9999999873 267788899999999955 67888 49999999999999999887446
Q ss_pred EEeccCCC----ceEEEE----EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 766 HSFESHKD----EIFQVQ----WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 766 ~~~~~h~~----~V~~l~----fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
..+..|.+ .+.+++ |+|++.. +++|+.||.|++||+++... .....|...|.+++|
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~v~~~~~ 217 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMAL---------------RWETNIKNGVCSLEF 217 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEE---------------EEEEECSSCEEEEEE
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCce---------------eeecCCCCceEEEEc
Confidence 77766554 899998 7888884 89999999999999987332 223467889999999
Q ss_pred cc---CCCeEEEEEeCCCeEee
Q psy4578 838 NP---NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 sp---dg~~Llasgs~Dg~IrI 856 (860)
+| ++.+ +++++.||.|++
T Consensus 218 ~~~~~~~~~-l~~~~~dg~i~i 238 (357)
T 3i2n_A 218 DRKDISMNK-LVATSLEGKFHV 238 (357)
T ss_dssp SCSSSSCCE-EEEEESTTEEEE
T ss_pred CCCCCCCCE-EEEECCCCeEEE
Confidence 99 8885 778899998876
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=2.2e-20 Score=220.69 Aligned_cols=219 Identities=15% Similarity=0.224 Sum_probs=177.0
Q ss_pred EEEeeccchh-----hhhhhhhcccc-eeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCC-----cccCeeeccCCCCCe
Q psy4578 603 VMYLENKTRA-----QICQLLDKLRL-LIDVAWHLL-HESLFGSVADDQKLMIWDTRSHN-----VSKPSHTVDAHTAEV 670 (860)
Q Consensus 603 il~l~n~~~~-----~l~~l~~~~~~-V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~-----~~~~~~~~~~h~~~V 670 (860)
.+.+|+.... ....+.+|.+. |++++|+|. ++.+|++|+.||.|++||+.++. .......+..|...|
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccE
Confidence 3455555544 45556678888 999999973 57899999999999999997531 124566777899999
Q ss_pred eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578 671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD 750 (860)
Q Consensus 671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D 750 (860)
.+++|+|++++ +++++.+.. ..+.|.+||. + ..+..+.+|...|.+++|+|++.+++++|+.|
T Consensus 120 ~~~~~s~~~~~-l~~~~~~~~-----------~~~~v~~~d~--~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 120 SDISWDFEGRR-LCVVGEGRD-----------NFGVFISWDS--G---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEECTTSSE-EEEEECCSS-----------CSEEEEETTT--C---CEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred EEEEEeCCCCE-EEEeccCCC-----------CccEEEEEEC--C---CcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 99999999996 667766621 1223888883 2 56778889999999999999998779999999
Q ss_pred CcEEEEeCCCCceeeEEeccCCC---ceEEEEEcCC-CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-
Q psy4578 751 KTVALWDLRNLKLKLHSFESHKD---EIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH- 825 (860)
Q Consensus 751 g~I~IWDl~~~~~~~~~~~~h~~---~V~~l~fsp~-g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~- 825 (860)
|.|++||+.+... ...+.+|.. .|++++|+|+ ++ ++++++.||.|++||+.++. .+..+
T Consensus 183 ~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~--------------~~~~~~ 246 (615)
T 1pgu_A 183 GSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGE--------------FLKYIE 246 (615)
T ss_dssp TEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCC--------------EEEECC
T ss_pred CcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCC--------------EeEEec
Confidence 9999999998876 788889999 9999999999 87 48999999999999998743 34444
Q ss_pred c---CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 826 G---GHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 826 ~---~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
. +|...|.+++|+ ++. .+++++.|+.|++
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~ 278 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQ-KFATVGADATIRV 278 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEE
T ss_pred ccccccCCceEEEEEc-CCC-EEEEEcCCCcEEE
Confidence 4 789999999999 888 5778999998886
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.4e-20 Score=242.14 Aligned_cols=232 Identities=24% Similarity=0.396 Sum_probs=183.8
Q ss_pred eeeeecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc
Q psy4578 586 LNFFKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD 664 (860)
Q Consensus 586 ~~ll~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~ 664 (860)
+.+...|.+..+......+.+|+....+ +..+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++ +.+..+.
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~ 696 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATG---KLVHTYD 696 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCC---ceEEEEc
Confidence 3333344443333333345566655544 444556788999999998 7889999999999999999984 5577888
Q ss_pred CCCCCeeEEEEccCC-CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578 665 AHTAEVNCLSFNPYS-EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 743 (860)
Q Consensus 665 ~h~~~V~~l~~sp~g-~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l 743 (860)
+|...|.+++|+|++ ..++++|+.||. |++||+.++ .....+.+|.+.|++++|+|++. .
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~---------------v~vwd~~~~---~~~~~~~~h~~~v~~~~~sp~~~-~ 757 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFF---------------LKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDE-L 757 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSC---------------EEEEETTSS---SEEEEECCCSSCEEEEEECSSTT-E
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCe---------------EEEEECCCc---chhheecCCCCCEEEEEEecCCC-E
Confidence 999999999999953 346899999998 999999987 66778889999999999999999 4
Q ss_pred EEEeeCCCcEEEEeCCCCceee------------------------------------------------------EEec
Q psy4578 744 LATGSADKTVALWDLRNLKLKL------------------------------------------------------HSFE 769 (860)
Q Consensus 744 lasgs~Dg~I~IWDl~~~~~~~------------------------------------------------------~~~~ 769 (860)
+++|+.||.|++||++++.... ....
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 9999999999999987654310 0112
Q ss_pred cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
+|...|.+++|+|+++. +++|+.||.|++||+.+ ...+....+|.+.|++++|+|+|.+ +++++
T Consensus 838 ~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s 901 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHL-AVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGSS-FLTAS 901 (1249)
T ss_dssp SSSSCCCEEEECSSTTE-EEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSE-EEEEE
T ss_pred CCCCceEEEEEcCCCCE-EEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCCE-EEEEe
Confidence 57778888999998874 78888899999999876 3456677799999999999999995 77999
Q ss_pred CCCeEee
Q psy4578 850 EDNIMQK 856 (860)
Q Consensus 850 ~Dg~IrI 856 (860)
.|+.+++
T Consensus 902 ~dg~v~v 908 (1249)
T 3sfz_A 902 DDQTIRV 908 (1249)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9999886
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=5.6e-20 Score=203.90 Aligned_cols=223 Identities=14% Similarity=0.175 Sum_probs=163.4
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE- 700 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~- 700 (860)
..+..+++.+.++.++++|+.|++|++||..++ +.+..+. +...|.++.|+++. ++++ .|+.+.+|+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~---~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK---QDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTC
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC---cEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCc
Confidence 358888888754555577888999999999885 3444554 56799999998753 3333 3778999988776
Q ss_pred ------------------------ccCCCcEEEEeCCCCCC------------CCC-eeeecCCCCCeEEEEEcCCCCcE
Q psy4578 701 ------------------------ENYDQKLMIWDTRSHNV------------SKP-SHTVDAHTAEVNCLSFNPYSEYI 743 (860)
Q Consensus 701 ------------------------~~~dg~I~iwDl~~~~~------------~~~-~~~~~~h~~~I~sl~~sp~g~~l 743 (860)
+..+|.|++||+.++.. ..+ +..+.+|.+.|++++|+|+|. +
T Consensus 131 ~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~ 209 (355)
T 3vu4_A 131 KRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-M 209 (355)
T ss_dssp CBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-E
T ss_pred eeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-E
Confidence 67899999999987531 012 677899999999999999998 5
Q ss_pred EEEeeCCCc-EEEEeCCCCceeeEEec-c-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-----
Q psy4578 744 LATGSADKT-VALWDLRNLKLKLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE----- 815 (860)
Q Consensus 744 lasgs~Dg~-I~IWDl~~~~~~~~~~~-~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~----- 815 (860)
|++|+.||+ |++||++++.. +..+. + |...|++++|+|+|++ |++|+.||+|++||+.............
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 287 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK 287 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred EEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence 999999998 99999999887 67776 5 9999999999999985 8999999999999998753221110000
Q ss_pred --CCCC--ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 816 --DGPP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 816 --~~~~--~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.... ........+......++|+++|.+ +++++.||.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~ 331 (355)
T 3vu4_A 288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIET 331 (355)
T ss_dssp CCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEE
T ss_pred ccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEE
Confidence 0000 001111122334567999999995 667888988764
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.86 E-value=2.3e-20 Score=202.22 Aligned_cols=189 Identities=16% Similarity=0.315 Sum_probs=150.9
Q ss_pred hhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcc------cCeeeccCCCCCeeEEEEccC--CCeEEEEE
Q psy4578 616 QLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVS------KPSHTVDAHTAEVNCLSFNPY--SEYILATG 686 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~------~~~~~~~~h~~~V~~l~~sp~--g~~llasg 686 (860)
.+..|.+.|++++|+|. ++.+|++|+.||.|++||+.++... .....+.+|...|.+++|+|+ +. .+++|
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~ 130 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACL 130 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEe
Confidence 34467789999999985 5889999999999999999875321 346677889999999999998 77 58999
Q ss_pred eCCCceeeeccccc-------------------------------------------ccCCCcEEEEeCCCCCCCCCeee
Q psy4578 687 SADKTQFEVEEEEE-------------------------------------------ENYDQKLMIWDTRSHNVSKPSHT 723 (860)
Q Consensus 687 s~Dg~i~~~~~~~~-------------------------------------------~~~dg~I~iwDl~~~~~~~~~~~ 723 (860)
+.||.+.+|+.... +..++.+.+|+...+. ...+..
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 209 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-LHVAAK 209 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-EEEEEE
T ss_pred cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-eeeeee
Confidence 99999888875432 1234555555554431 133667
Q ss_pred ecCCCCCeEEEEEcCCCC---cEEEEeeCCCcEEEEeCCCCc--------------------------------------
Q psy4578 724 VDAHTAEVNCLSFNPYSE---YILATGSADKTVALWDLRNLK-------------------------------------- 762 (860)
Q Consensus 724 ~~~h~~~I~sl~~sp~g~---~llasgs~Dg~I~IWDl~~~~-------------------------------------- 762 (860)
+.+|...|++++|+|++. .++++|+.||.|++||++...
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence 788999999999999982 369999999999999998741
Q ss_pred -------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578 763 -------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 763 -------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
..+..+.+|...|++++|+|+++. |++|+.||.|++||+.+...
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-LSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -CCSEEEEEEEEECTTSSCEEEEEECSSSCC-EEEEETTSCEEEEEECTTSC
T ss_pred ecccccccEEEEEecccccEEEEEEcCCCCE-EEEecCCCcEEEEecCcCcc
Confidence 236667889999999999999985 89999999999999997543
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=1.4e-20 Score=205.21 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=163.9
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
.|.+.|++++|+| ++.+|++|+.||.|++|++.++..........+|...|++++|+|++...+++|+.||.
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------- 80 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE------- 80 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-------
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe-------
Confidence 5678899999999 78899999999999999998764222345556899999999999998823889999998
Q ss_pred ccccCCCcEEEEeC-CCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC---------CceeeE
Q psy4578 699 EEENYDQKLMIWDT-RSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN---------LKLKLH 766 (860)
Q Consensus 699 ~~~~~dg~I~iwDl-~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~---------~~~~~~ 766 (860)
|++||+ .++ ....+.+ |...|.+++|+| +. .+++|+.||.|++||+++ ... +.
T Consensus 81 --------i~~wd~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~ 145 (342)
T 1yfq_A 81 --------ILKVDLIGSP----SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SN 145 (342)
T ss_dssp --------EEEECSSSSS----SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESC-SS
T ss_pred --------EEEEEeccCC----ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCe-ee
Confidence 999999 764 3467778 999999999999 77 599999999999999987 543 44
Q ss_pred EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC-CCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeE
Q psy4578 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK-IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWV 844 (860)
Q Consensus 767 ~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~-~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~L 844 (860)
.+. |...|.+++|+|++ +++++.||.|++||+++ ... ........|...|.+++|+| ++. +
T Consensus 146 ~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~-~ 208 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD------------NGTIEESGLKYQIRDVALLPKEQE-G 208 (342)
T ss_dssp SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC------------CCEEEECSCSSCEEEEEECSGGGC-E
T ss_pred EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc------------cceeeecCCCCceeEEEECCCCCC-E
Confidence 444 88999999999887 78999999999999987 432 12233446788999999999 998 5
Q ss_pred EEEEeCCCeEee
Q psy4578 845 ICSVSEDNIMQK 856 (860)
Q Consensus 845 lasgs~Dg~IrI 856 (860)
+++++.||.+++
T Consensus 209 l~~~~~dg~i~i 220 (342)
T 1yfq_A 209 YACSSIDGRVAV 220 (342)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEEecCCcEEE
Confidence 778999999986
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-20 Score=216.91 Aligned_cols=192 Identities=8% Similarity=0.148 Sum_probs=154.6
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-----CeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
.+...|.+++|+| ++..+|+++.||.|++||... .+..+. |.. .|.+++|||+|++ +++|+.||+
T Consensus 83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~-LAsgs~DGt-- 152 (588)
T 2j04_A 83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESS-IVVGNEDGE-- 152 (588)
T ss_dssp SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSC-EEEEETTSE--
T ss_pred CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCE-EEEEcCCCE--
Confidence 4467899999999 899999999999999999543 445555 554 5999999999995 999999999
Q ss_pred eecccccccCCCcEEEEeCCCCCCCC----Ceeee----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSK----PSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK- 764 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~----~~~~~----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~- 764 (860)
|++||+.++.... .+.++ .+|...|.+++|+|+| +++++.|++|++||+.+....
T Consensus 153 -------------VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 153 -------------LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp -------------EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC
T ss_pred -------------EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc
Confidence 9999998863211 24555 6788899999999998 678888999999999887741
Q ss_pred -eEEe-ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE--ccC
Q psy4578 765 -LHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPN 840 (860)
Q Consensus 765 -~~~~-~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~--spd 840 (860)
...+ .+|...|.+++|+ |. .+++++ +|.|++||+... .......+|.+.|.+++| +|+
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~--------------~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY--------------SISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT--------------EEEEEECSCCSCCCEEEETTCSS
T ss_pred ceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC--------------eEEEEEcCCCceEEEEEeeeCCC
Confidence 3455 4788999999999 54 477776 799999998872 222233379999999999 999
Q ss_pred CCeEEEEEeCCCeEee
Q psy4578 841 EPWVICSVSEDNIMQK 856 (860)
Q Consensus 841 g~~Llasgs~Dg~IrI 856 (860)
+. .++++++||+ ++
T Consensus 279 ~~-~La~a~edG~-kl 292 (588)
T 2j04_A 279 ST-ILLMSNKTSY-KV 292 (588)
T ss_dssp CE-EEEECSSCEE-EE
T ss_pred CC-EEEEEcCCCC-EE
Confidence 97 5889998998 54
No 100
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-20 Score=233.78 Aligned_cols=209 Identities=16% Similarity=0.168 Sum_probs=163.4
Q ss_pred hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
.+|.+.|++++|+| ++.+||+|+.||.|+||+..+. ..... ..|...|++++|+| |+ .+++++.|++
T Consensus 14 ~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~-~L~S~s~D~~------ 80 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GI-YLVVINAKDT------ 80 (902)
T ss_dssp EECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TT-EEEEEETTCE------
T ss_pred cCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CC-EEEEEECcCe------
Confidence 36678999999999 7899999999999999998763 22222 35788999999999 77 5899999999
Q ss_pred cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee----------EE
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL----------HS 767 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~----------~~ 767 (860)
|++||+.++ ..+..+. |...|++++|+|++.+ +++|+.||.|++||+++..... ..
T Consensus 81 ---------v~lWd~~~~---~~~~~~~-~~~~V~~v~~sp~g~~-l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 81 ---------VYVLSLYSQ---KVLTTVF-VPGKITSIDTDASLDW-MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp ---------EEEEETTTC---SEEEEEE-CSSCEEEEECCTTCSE-EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred ---------EEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCE-EEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 999999986 4555554 6789999999999995 9999999999999999876421 22
Q ss_pred eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-----CCCCccEEEecCccCceEEEEEccCCC
Q psy4578 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE-----DGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-----~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
..+|.+.|++++|+|++..++++|+.||.| +||+++......+.... .+... ......|...|++++|+|+|.
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS-EKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC-CCTTSCBCCCEEEEEECTTSS
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc-cccccccCCCeEEEEEcCCCC
Confidence 367899999999999764468999999999 99999865433222110 00000 011234568899999999999
Q ss_pred eEEEEEeCCCeEee
Q psy4578 843 WVICSVSEDNIMQK 856 (860)
Q Consensus 843 ~Llasgs~Dg~IrI 856 (860)
.+++|+.|+.|++
T Consensus 225 -~lasgs~Dg~i~l 237 (902)
T 2oaj_A 225 -HIITIHEDNSLVF 237 (902)
T ss_dssp -EEEEEETTCCEEE
T ss_pred -EEEEEECCCeEEE
Confidence 5789999999886
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=3.4e-20 Score=238.56 Aligned_cols=214 Identities=29% Similarity=0.478 Sum_probs=177.4
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
+.+|.+.|++++|+| ++.++++|+.||+|++||+.++ ..+..+.+|.+.|++++|+|++++ +++|+.||+
T Consensus 611 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~----- 680 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSY-IATCSADKK----- 680 (1249)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSE-----
T ss_pred EecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCE-EEEEeCCCe-----
Confidence 446888999999998 7899999999999999999885 557778899999999999999985 899999998
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC-CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 775 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g-~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V 775 (860)
|++||+.++ ..+..+.+|...|.+++|+|++ ..++++|+.||.|++||++++.. ...+.+|.+.|
T Consensus 681 ----------v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v 746 (1249)
T 3sfz_A 681 ----------VKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSV 746 (1249)
T ss_dssp ----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCE
T ss_pred ----------EEEEECCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCE
Confidence 999999987 6778889999999999999953 23689999999999999999887 78888999999
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------------------cCC---------------
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----------------------EDG--------------- 817 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-----------------------~~~--------------- 817 (860)
++++|+|+|+. +++|+.||.|++||+.+.......... .++
T Consensus 747 ~~~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 747 NHCRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 99999999985 899999999999999875432221100 000
Q ss_pred --CCc-cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 818 --PPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 818 --~~~-~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
... ......+|.+.|.+++|+|++. ++++++.|+.|++
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVEL 866 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEE
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 011 1122237889999999999999 4778888988875
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.85 E-value=1.6e-20 Score=209.28 Aligned_cols=209 Identities=15% Similarity=0.168 Sum_probs=158.5
Q ss_pred ccccceeeeeeecceee--cccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578 579 QEDLKLFLNFFKQGYFK--GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV 656 (860)
Q Consensus 579 ~~D~~l~~~ll~~G~~~--Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~ 656 (860)
.+++...+.+...|.+. ++......+.+|+....+....+.|.+.|.+++|+| ++.++++++.| .+++|+..++..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcc
Confidence 34455555555555442 334445567788887777777778888999999999 78899988855 567777666432
Q ss_pred ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEE
Q psy4578 657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLS 735 (860)
Q Consensus 657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~ 735 (860)
.......+|...|.+++|+|++.. +++++.|+. ....++.||+..... ......+.+|...|++++
T Consensus 210 -~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 210 -IARKTDFDKNWSLSKINFIADDTV-LIAASLKKG-----------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD 276 (365)
T ss_dssp -EEEECCCCTTEEEEEEEEEETTEE-EEEEEESSS-----------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred -eeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCc-----------ceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence 122345678899999999999985 777776663 111277888876421 112346778999999999
Q ss_pred EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE-eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578 736 FNPYSEYILATGSADKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805 (860)
Q Consensus 736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~ 805 (860)
|+|+|.+ ||+|+.||+|+|||+++++. +.. +.+|...|++++|+|+|++ |+||+.|++|+|||+...
T Consensus 277 ~Spdg~~-lasgs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 277 VDMKGEL-AVLASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDSTY-VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ECTTSCE-EEEEETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCTT
T ss_pred ECCCCCc-eEEEcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC
Confidence 9999994 99999999999999999887 555 5789999999999999985 899999999999999753
No 103
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.85 E-value=7e-20 Score=209.59 Aligned_cols=195 Identities=25% Similarity=0.425 Sum_probs=163.5
Q ss_pred hhhcccce-eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 617 LLDKLRLL-IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 617 l~~~~~~V-~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
+.+|.+.| .++.++ ++++++|+.||.|++||+.++ +.+..+.+|.+.|++++|+|++ .+++|+.||+
T Consensus 117 l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~---- 184 (464)
T 3v7d_B 117 LRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRT---- 184 (464)
T ss_dssp EECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT--EEEEEETTSC----
T ss_pred EcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCC----
Confidence 34565664 555554 579999999999999999884 5677888999999999999977 5899999999
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCcee---------
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLK--------- 764 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~--------- 764 (860)
|++||+.++ ..+..+.+|...|.+++|++ ++. .+++|+.||.|++||+++....
T Consensus 185 -----------i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 185 -----------VRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp -----------EEEEETTTT---EEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred -----------EEEEECCCC---cEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 999999987 56778889999999999985 556 5999999999999999876531
Q ss_pred -------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578 765 -------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831 (860)
Q Consensus 765 -------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~ 831 (860)
...+.+|...+.++ ++++. ++++|+.||.|++||+++ ...+..+.+|...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQ--------------MKCLYILSGHTDR 312 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSC
T ss_pred ceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEecCCCCC
Confidence 45677888888887 56676 489999999999999987 3456677789999
Q ss_pred eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 832 ISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 832 I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|++++|+|++++ +++|+.||.|++
T Consensus 313 v~~~~~~~~~~~-l~sg~~dg~i~v 336 (464)
T 3v7d_B 313 IYSTIYDHERKR-CISASMDTTIRI 336 (464)
T ss_dssp EEEEEEETTTTE-EEEEETTSCEEE
T ss_pred EEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 999999999995 779999999886
No 104
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-20 Score=214.46 Aligned_cols=209 Identities=13% Similarity=0.206 Sum_probs=157.3
Q ss_pred ccceeeeE--eeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 621 LRLLIDVA--WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 621 ~~~V~~v~--~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
...+.++. +++ ++.++++|+.||.|++||+.++ ..+..+.+ |.+.|++++|+|++.. +++|+.||.
T Consensus 168 ~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~----- 237 (437)
T 3gre_A 168 NEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTL---ERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGI----- 237 (437)
T ss_dssp CCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTC---CEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSC-----
T ss_pred ccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---eeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCe-----
Confidence 34555665 334 6889999999999999999884 45666666 8899999999999884 899999999
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcC----CCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNP----YSEYILATGSADKTVALWDLRNLKLKLHSFES- 770 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~- 770 (860)
|++||++++ ..+..+. .|...|.+++|+| ++. ++++|+.||.|++||++++.. +..+.+
T Consensus 238 ----------i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~ 302 (437)
T 3gre_A 238 ----------IDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHC-QYAFINS 302 (437)
T ss_dssp ----------EEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEE-EEEEESS
T ss_pred ----------EEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcE-EEEEEcC
Confidence 999999986 5556654 7888999997765 455 599999999999999998875 444443
Q ss_pred -------------------------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC---------
Q psy4578 771 -------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED--------- 816 (860)
Q Consensus 771 -------------------------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~--------- 816 (860)
|...|++++|+ +++ +|++|+.||.|++||+.++...........
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ 380 (437)
T ss_dssp SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred CCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence 55668889998 665 589999999999999998776544432110
Q ss_pred --------------CCCccEEEecCccCceEEEEEccC-CCeEEEEEeCCCeEee
Q psy4578 817 --------------GPPELLFIHGGHTAKISDFSWNPN-EPWVICSVSEDNIMQK 856 (860)
Q Consensus 817 --------------~~~~~i~~~~~h~~~I~~i~~spd-g~~Llasgs~Dg~IrI 856 (860)
...........|.+.|++++|+++ +..++++|+.||.|+|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 381 VTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred eecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 000111223349999999999998 3447999999999987
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=5.6e-20 Score=199.26 Aligned_cols=193 Identities=10% Similarity=0.102 Sum_probs=139.7
Q ss_pred ceeeeEeeccC----CcEEEEEe--------------------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc-
Q psy4578 623 LLIDVAWHLLH----ESLFGSVA--------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP- 677 (860)
Q Consensus 623 ~V~~v~~sp~~----~~~lasgs--------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp- 677 (860)
.|.+++++| + +..+++++ .|+.|++|++... ++.+..+.+|...++.++|++
T Consensus 113 ~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 113 EIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEE
T ss_pred ceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeecc
Confidence 567777777 4 45555544 2788888888442 344556667888888888888
Q ss_pred --CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCC---CCeEEEEEcCCCCcE---------
Q psy4578 678 --YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHT---AEVNCLSFNPYSEYI--------- 743 (860)
Q Consensus 678 --~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~---~~I~sl~~sp~g~~l--------- 743 (860)
++. ++++|+.|++ |++||+.++ +.+.++.+|. ..+.+++|+|+|..+
T Consensus 190 ~g~~~-~LaSgS~D~T---------------IkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 190 QGMQE-ALLGTTIMNN---------------IVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp ETSTT-EEEEEETTSE---------------EEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred CCCCc-eEEEecCCCc---------------EEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 556 5899999998 999999998 6677776654 467788999999853
Q ss_pred --EEEeeCCCcEEEEeCCCCceeeEEe-----ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578 744 --LATGSADKTVALWDLRNLKLKLHSF-----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816 (860)
Q Consensus 744 --lasgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~ 816 (860)
+++|+.|++|++||..++.. +..+ .+|...+.+..++ +. ++++|+.||+|++||+.+
T Consensus 251 w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t------------ 314 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL------------ 314 (356)
T ss_dssp -------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT------------
T ss_pred ceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC------------
Confidence 36788999999999998876 4433 3676666555554 55 589999999999999998
Q ss_pred CCCccEEEecCccCceE-EEEEccCCCeEEEEEeCCCeEee
Q psy4578 817 GPPELLFIHGGHTAKIS-DFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 817 ~~~~~i~~~~~h~~~I~-~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+++..+.+|...+. .++|+|||++ +++|+.|++|+|
T Consensus 315 --Gk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIkl 352 (356)
T 2w18_A 315 --GQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFV 352 (356)
T ss_dssp --CSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred --CcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEE
Confidence 345667778887655 5899999995 779999999997
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.1e-20 Score=229.01 Aligned_cols=224 Identities=13% Similarity=0.194 Sum_probs=165.2
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+.+|+....+......|...|.+++|+| +.+|++++.|++|++||+.++ +.+..+. |.+.|++++|+|++.+
T Consensus 40 ~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~---~~~~~~~-~~~~V~~v~~sp~g~~- 112 (902)
T 2oaj_A 40 EVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ---KVLTTVF-VPGKITSIDTDASLDW- 112 (902)
T ss_dssp EEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC---SEEEEEE-CSSCEEEEECCTTCSE-
T ss_pred EEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCE-
Confidence 45667766655555556778899999998 559999999999999999885 3344553 6689999999999995
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCC-e-------eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP-S-------HTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~-~-------~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~ 754 (860)
+++|+.||+ |++||+.++..... + ....+|.+.|++++|+|++..++++|+.||.|
T Consensus 113 l~sgs~dg~---------------V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 113 MLIGLQNGS---------------MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp EEEEETTSC---------------EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred EEEEcCCCc---------------EEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 899999999 99999987532100 0 23467999999999999765469999999999
Q ss_pred EEeCCCCceeeEEeccC------------------CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc--cccc
Q psy4578 755 LWDLRNLKLKLHSFESH------------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS--TEDA 814 (860)
Q Consensus 755 IWDl~~~~~~~~~~~~h------------------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~--~~~~ 814 (860)
+||+++... ...+..| ...|++++|+|+|.+ |++|+.||+|++||+++++.... ....
T Consensus 177 lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 999999876 6666554 578999999999985 89999999999999988654321 1000
Q ss_pred c-CCCC-ccEEEecCccCceEEEEEc----cCCCeEEEEEeCC
Q psy4578 815 E-DGPP-ELLFIHGGHTAKISDFSWN----PNEPWVICSVSED 851 (860)
Q Consensus 815 ~-~~~~-~~i~~~~~h~~~I~~i~~s----pdg~~Llasgs~D 851 (860)
. .... ........|...|++++|+ |++..++++|+.|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 0 0000 0000000245689999995 4555678888776
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=1.3e-19 Score=206.28 Aligned_cols=205 Identities=20% Similarity=0.371 Sum_probs=170.3
Q ss_pred EEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 604 MYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 604 l~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
+.+|+....+. ..+.+|.+.|.+++| ++.++++|+.||.|++||+.++ ..+..+.+|...|.+++|++ . .
T Consensus 155 i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~--~-~ 225 (435)
T 1p22_A 155 IKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRFNN--G-M 225 (435)
T ss_dssp EEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCSCEEEEECCT--T-E
T ss_pred EEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCcEEEEEEcC--C-E
Confidence 44555544443 334467789999999 4689999999999999999985 55777889999999999974 3 5
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~ 762 (860)
+++|+.||. |++||+.++........+.+|...|.+++| ++. .+++|+.||.|++||++++.
T Consensus 226 l~s~s~dg~---------------i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 226 MVTCSKDRS---------------IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp EEEEETTSC---------------EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTCC
T ss_pred EEEeeCCCc---------------EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcCc
Confidence 899999999 999999987543334677899999999999 566 59999999999999999988
Q ss_pred eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
. +..+.+|...|.+++|+ +. ++++|+.||.|++||++++ .++..+.+|...|.+++| ++.
T Consensus 288 ~-~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 288 F-VRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG--------------ACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp E-EEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEC--CSS
T ss_pred E-EEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC--------------CEEEEEeCCcCcEEEEEe--cCC
Confidence 7 88889999999999995 44 5899999999999999873 446677789999999999 666
Q ss_pred eEEEEEeCCCeEee
Q psy4578 843 WVICSVSEDNIMQK 856 (860)
Q Consensus 843 ~Llasgs~Dg~IrI 856 (860)
.+++|+.||.|++
T Consensus 348 -~l~sg~~dg~i~v 360 (435)
T 1p22_A 348 -RIVSGAYDGKIKV 360 (435)
T ss_dssp -EEEEEETTSCEEE
T ss_pred -EEEEEeCCCcEEE
Confidence 5889999999986
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.84 E-value=9.7e-20 Score=202.01 Aligned_cols=211 Identities=10% Similarity=0.107 Sum_probs=154.6
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
....|.+.|++++|+| ++.+|++|+.|| +++|++.++ ...... +...+..+++.++++.++++|+.|+++.+|
T Consensus 14 ~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp -----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred ccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 4456778999999998 788999988775 789998763 222222 223588899999888777888899998888
Q ss_pred ccccc-----------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE-eeCCC
Q psy4578 696 EEEEE-----------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-GSADK 751 (860)
Q Consensus 696 ~~~~~-----------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas-gs~Dg 751 (860)
+.... ...++.|++||+.+.. +.+..+.. ....+++++ ..++++ |+.||
T Consensus 87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPW--KRITDDIR---FGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTC--CBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred ECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCc--eeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence 76543 1236778889888751 12222222 334455666 333333 78999
Q ss_pred cEEEEeCCCCc--------------ee-eEEeccCCCceEEEEEcCCCCCEEEEEECCCc-EEEEECCCCCccccccccc
Q psy4578 752 TVALWDLRNLK--------------LK-LHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAE 815 (860)
Q Consensus 752 ~I~IWDl~~~~--------------~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~~~ 815 (860)
.|++||++++. .+ +..+.+|...|++++|+|+|.+ |++|+.||+ |++||++++.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~~v~iwd~~~~~--------- 229 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTEDGV--------- 229 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCSEEEEEETTTCC---------
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCCEEEEEECCCCc---------
Confidence 99999999765 11 5778899999999999999984 999999998 9999998743
Q ss_pred CCCCccEEEec-C-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 816 DGPPELLFIHG-G-HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 816 ~~~~~~i~~~~-~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++..+. + |.+.|++++|+|+|++ +++++.|+.|+|
T Consensus 230 -----~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~i 266 (355)
T 3vu4_A 230 -----LVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHV 266 (355)
T ss_dssp -----EEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEE
T ss_pred -----EEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEE
Confidence 345554 4 8999999999999994 779999999987
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.84 E-value=2.9e-19 Score=202.50 Aligned_cols=196 Identities=21% Similarity=0.423 Sum_probs=164.8
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY 703 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~ 703 (860)
++.++|++ +++|++|. |++|+|||..+++.. ....+.+|...|++++|+|+|++ +++|+.||+
T Consensus 108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~-lasgs~Dg~------------ 170 (420)
T 4gga_A 108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAE------------ 170 (420)
T ss_dssp CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSE-EEEEETTSC------------
T ss_pred ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCE-EEEEECCCe------------
Confidence 56899996 45777775 899999999986432 22345678889999999999995 899999999
Q ss_pred CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 783 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~ 783 (860)
|++||+.++ +.+..+.+|...+.+++|++ . ++++|+.|+.+++||.+.....+..+.+|...+..+.|+|+
T Consensus 171 ---v~iWd~~~~---~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 171 ---VQLWDVQQQ---KRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp ---EEEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred ---EEEEEcCCC---cEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence 999999987 67788899999999998864 4 69999999999999999877778889999999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE--EeCCCeEee
Q psy4578 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQK 856 (860)
Q Consensus 784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas--gs~Dg~IrI 856 (860)
|.. +++++.||.+++|+..+.... ...+.....|.+.|.+++|+|++..++++ |+.|+.|++
T Consensus 242 g~~-l~s~~~D~~v~i~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 242 GRH-LASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp SSE-EEEEETTSCEEEEESSCCSSC----------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred CCe-eeeeeccccceEEeecccccc----------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 985 899999999999999875432 23345667899999999999988877765 457999886
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.84 E-value=2.5e-19 Score=199.82 Aligned_cols=229 Identities=11% Similarity=0.081 Sum_probs=177.2
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+.+|+....+....+.++..+.+++|+|++..++++++.|+.|++||..++ +....+..+. .+.+++|+|+++++
T Consensus 13 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~spdg~~l 88 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGKQV 88 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEE
T ss_pred EEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECCCCCEE
Confidence 4666777777777677777789999999954445678889999999999875 3344544443 89999999999987
Q ss_pred EEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578 683 LATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS 735 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~ 735 (860)
+++++.++.+.+|+.... +..++.|++||+.++ +.+..+..| ..+.+++
T Consensus 89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVG-RSPKGIA 164 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECC-SSEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecC-CCcceEE
Confidence 788888899999987643 134788999999876 444555544 5679999
Q ss_pred EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCccccccc
Q psy4578 736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTED 813 (860)
Q Consensus 736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~ 813 (860)
|+|++.+++++++.|+.|++||++++.. ...+. +...+.+++|+|+|+++++++. .++.|++||+.+..
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~------- 235 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------- 235 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-------
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-------
Confidence 9999998668889999999999998875 44444 5678999999999987444443 78999999998743
Q ss_pred ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+.....| ..+.+++|+|+|++++++++.|+.|++
T Consensus 236 -------~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 236 -------ITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp -------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -------EEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEE
Confidence 23333344 357899999999988889999998886
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.84 E-value=4.4e-19 Score=202.21 Aligned_cols=222 Identities=20% Similarity=0.346 Sum_probs=176.7
Q ss_pred EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+....+. ..+..|...|.+++|+ +..+++|+.||.|++||+.++ +.+..+.+|...|.+++| ++.
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~--~~~- 250 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQY--DGR- 250 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSC---CEEEEEECCSSCEEEEEE--CSS-
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCC---cEEEEEcCCcccEEEEEE--CCC-
Confidence 355566554443 3445677889999996 467999999999999999884 556777889999999999 566
Q ss_pred EEEEEeCCCceeeeccccc-------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578 682 ILATGSADKTQFEVEEEEE-------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~-------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~ 736 (860)
.+++|+.||.+.+|+.... ++.||.|++||++++ ..+..+.+|...+.++.+
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEE
Confidence 4899999999999986543 245889999999987 667788899999999988
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 813 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~ 813 (860)
+ +. .+++|+.||.|++||++++.. +..+.+ |...|.+++|+ ++ ++++|+.||.|++||+.+++.......
T Consensus 328 ~--~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 328 K--DN-ILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFN--KN-FVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp E--TT-EEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEEC--SS-EEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred e--CC-EEEEEeCCCeEEEEECCCCcE-EEEEccCCCCCCCEEEEEEC--CC-EEEEEeCCCeEEEEECCCCceeeeeec
Confidence 5 44 599999999999999998886 677765 88899999996 44 589999999999999998543221100
Q ss_pred ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
....+|.+.|++++|+|++. ++++|+.||.
T Consensus 401 ---------~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~ 430 (445)
T 2ovr_B 401 ---------LESGGSGGVVWRIRASNTKL-VCAVGSRNGT 430 (445)
T ss_dssp ---------CTTGGGTCEEEEEEECSSEE-EEEEECSSSS
T ss_pred ---------cccCCCCceEEEEEecCCEE-EEEEcccCCC
Confidence 01146888999999999998 5889999985
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-19 Score=203.53 Aligned_cols=211 Identities=11% Similarity=0.071 Sum_probs=162.8
Q ss_pred EEEEeeccc--hhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc-CeeeccCCCCCeeEEEE
Q psy4578 602 EVMYLENKT--RAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSF 675 (860)
Q Consensus 602 ~il~l~n~~--~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~-~~~~~~~h~~~V~~l~~ 675 (860)
..+.+|+.. .......+ .+...|++++|+| ++.+|++|+.||.|++|++.++.... ....+.+|...|++++|
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL 203 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEE
Confidence 345555555 44444444 4457899999998 78899999999999999998765433 44467789999999999
Q ss_pred ccC---CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578 676 NPY---SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADK 751 (860)
Q Consensus 676 sp~---g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg 751 (860)
+|+ +. .+++|+.|+. |++||+.++ ..+.. +.+|...|.+++|+ ++. +|++|+.||
T Consensus 204 sp~~~~~~-~l~s~~~d~~---------------i~vwd~~~~---~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~ 262 (450)
T 2vdu_B 204 IKDSDGHQ-FIITSDRDEH---------------IKISHYPQC---FIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDD 262 (450)
T ss_dssp EECTTSCE-EEEEEETTSC---------------EEEEEESCT---TCEEEECCCCSSCEEEEEEC-STT-EEEEEESSS
T ss_pred cCCCCCCc-EEEEEcCCCc---------------EEEEECCCC---ceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCC
Confidence 999 76 5899999998 999999876 44555 56899999999999 888 499999999
Q ss_pred cEEEEeCCCCceeeEEec-------------------------cCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEEC--C
Q psy4578 752 TVALWDLRNLKLKLHSFE-------------------------SHKDEIFQVQWSPHNETILASSG-TDRRLHVWDL--S 803 (860)
Q Consensus 752 ~I~IWDl~~~~~~~~~~~-------------------------~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl--~ 803 (860)
.|++||++++.. +..+. .....|.+++|+|++++ +++++ .|+.|++|++ .
T Consensus 263 ~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~~d~~i~iw~~~~~ 340 (450)
T 2vdu_B 263 KIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFFVEATKCIIILEMSEK 340 (450)
T ss_dssp EEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEEETTCSEEEEEEECSS
T ss_pred eEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEEECCCCeEEEEEeccC
Confidence 999999999876 55554 23457999999999986 66666 8999999999 3
Q ss_pred CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 804 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
.... ...+..+.+| +.|.+++|+|++ .++++++
T Consensus 341 ~~~~-----------l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~ 373 (450)
T 2vdu_B 341 QKGD-----------LALKQIITFP-YNVISLSAHNDE-FQVTLDN 373 (450)
T ss_dssp STTC-----------EEEEEEEECS-SCEEEEEEETTE-EEEEECC
T ss_pred CCCc-----------eeeccEeccC-CceEEEEecCCc-EEEEEec
Confidence 3111 1345556666 889999999954 3444444
No 113
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=1.3e-19 Score=214.09 Aligned_cols=201 Identities=12% Similarity=0.207 Sum_probs=167.8
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCC-eeEEEEcc--CCCeEEEEEeCCCceee
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAE-VNCLSFNP--YSEYILATGSADKTQFE 694 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~-V~~l~~sp--~g~~llasgs~Dg~i~~ 694 (860)
.+.+.|.+++|+| +++++++++ ++.|++||+.++... .....+.+|... |++++|+| ++++ +++|+.||.
T Consensus 16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~--- 89 (615)
T 1pgu_A 16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGK--- 89 (615)
T ss_dssp CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSE---
T ss_pred CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCE---
Confidence 4568899999999 788888888 789999999874111 567788899999 99999999 9985 899999998
Q ss_pred ecccccccCCCcEEEEeCCCCC-----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeCCCCceee
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHN-----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDLRNLKLKL 765 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~-----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl~~~~~~~ 765 (860)
|++||+.++. .......+..|...|.+++|+|++.+ +++++.+ +.|++|| .+.. +
T Consensus 90 ------------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~-~ 153 (615)
T 1pgu_A 90 ------------VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWD--SGNS-L 153 (615)
T ss_dssp ------------EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETT--TCCE-E
T ss_pred ------------EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEE--CCCc-c
Confidence 9999996430 11456677889999999999999995 7788777 7899998 3343 7
Q ss_pred EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC---ceEEEEEccC-C
Q psy4578 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPN-E 841 (860)
Q Consensus 766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~---~I~~i~~spd-g 841 (860)
..+.+|...|.+++|+|+++.++++++.||.|++||+.+ ...+..+.+|.. .|++++|+|+ +
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceEEEEEECCCCC
Confidence 788899999999999999987799999999999999876 344566778888 9999999999 8
Q ss_pred CeEEEEEeCCCeEee
Q psy4578 842 PWVICSVSEDNIMQK 856 (860)
Q Consensus 842 ~~Llasgs~Dg~IrI 856 (860)
+ ++++++.|+.|++
T Consensus 220 ~-~l~~~~~dg~i~v 233 (615)
T 1pgu_A 220 E-FVITVGSDRKISC 233 (615)
T ss_dssp C-EEEEEETTCCEEE
T ss_pred C-EEEEEeCCCeEEE
Confidence 8 5778888998876
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.6e-20 Score=201.82 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=148.7
Q ss_pred EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
.+.+ ++.++++|+.||.|++||+.+++ .+..+. ...|.++.|+|+ +++|+.|+++.+|..... +
T Consensus 43 ~~~~-d~~~l~sg~~Dg~v~iwd~~~~~---~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------~ 106 (343)
T 3lrv_A 43 SMYY-DKWVCMCRCEDGALHFTQLKDSK---TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------I 106 (343)
T ss_dssp SSSE-EEEEEEEEEETTEEEEEEESSSS---CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------E
T ss_pred hhcC-CCCEEEEECCCCcEEEEECCCCc---EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------e
Confidence 3443 67899999999999999999853 344433 467888889886 899999999777765543 6
Q ss_pred EEEeCCCCCCCCCeeee-cCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCceeeEEe-ccCCCceEEEEEcCC
Q psy4578 708 MIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPH 783 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~~l~fsp~ 783 (860)
.+||+.++ ..+..+ .+|...|.+++|+| ++.+ +++|+.||+|++||++++.. .... ..|...+++++|+|+
T Consensus 107 ~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 107 TILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD 181 (343)
T ss_dssp EEEETTTC---CEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT
T ss_pred EEeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC
Confidence 77777765 323333 36778999999999 9984 99999999999999999887 4444 345668999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|. ++++|+.||.|++||+++.... ...+.+ |.+.|++++|+|+|.+ ++++++| .|++
T Consensus 182 g~-~lasg~~dg~i~iwd~~~~~~~-------------~~~~~~~h~~~v~~l~fs~~g~~-l~s~~~~-~v~i 239 (343)
T 3lrv_A 182 SL-LLALYSPDGILDVYNLSSPDQA-------------SSRFPVDEEAKIKEVKFADNGYW-MVVECDQ-TVVC 239 (343)
T ss_dssp SC-EEEEECTTSCEEEEESSCTTSC-------------CEECCCCTTSCEEEEEECTTSSE-EEEEESS-BEEE
T ss_pred CC-EEEEEcCCCEEEEEECCCCCCC-------------ccEEeccCCCCEEEEEEeCCCCE-EEEEeCC-eEEE
Confidence 98 5899999999999999985432 133445 9999999999999995 5677755 6664
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.83 E-value=1.9e-19 Score=204.80 Aligned_cols=214 Identities=20% Similarity=0.416 Sum_probs=173.1
Q ss_pred EEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 604 MYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 604 l~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
+.+|+....+ +..+..|.+.|.+++|++ ..+++|+.||.|++||+.++........+.+|...|.+++| ++. .
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~ 268 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-Y 268 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-E
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-E
Confidence 4555554444 344456778899999974 58999999999999999886543334677899999999999 466 5
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~ 762 (860)
+++|+.||. |++||++++ ..+..+.+|...|.++.|+ +. .+++|+.||.|++||++++.
T Consensus 269 l~s~~~dg~---------------i~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 269 IVSASGDRT---------------IKVWNTSTC---EFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp EEEEETTSE---------------EEEEETTTC---CEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCe---------------EEEEECCcC---cEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCC
Confidence 899999998 999999987 6778888999999999995 45 59999999999999999988
Q ss_pred eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
. +..+.+|...|.+++| ++. .+++|+.||.|++||+.+....... ....++....+|.+.|++++| ++.
T Consensus 328 ~-~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 328 C-LRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP-----AGTLCLRTLVEHSGRVFRLQF--DEF 396 (435)
T ss_dssp E-EEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC-----TTTTEEEEECCCSSCCCCEEE--CSS
T ss_pred E-EEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc-----ccchheeeccCCCCCeEEEEe--CCC
Confidence 6 8889999999999999 565 4899999999999999764422111 112367778899999999999 666
Q ss_pred eEEEEEeCCCeEee
Q psy4578 843 WVICSVSEDNIMQK 856 (860)
Q Consensus 843 ~Llasgs~Dg~IrI 856 (860)
+ +++|+.||.|++
T Consensus 397 ~-l~s~s~Dg~i~i 409 (435)
T 1p22_A 397 Q-IVSSSHDDTILI 409 (435)
T ss_dssp C-EEECCSSSEEEE
T ss_pred E-EEEEeCCCEEEE
Confidence 4 779999999986
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.83 E-value=2.8e-19 Score=199.39 Aligned_cols=188 Identities=21% Similarity=0.299 Sum_probs=152.4
Q ss_pred eEEEEeeccchhhhhhhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578 601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
...+.+|+....+....+.+...+.+++|++.+ +.++++|+.||.|++||+.++ .....+.+|...|++++|+|+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCCCSCEEEEEECSS
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCCCCcEEEEEECCC
Confidence 345677777777777777788899999999853 348999999999999999874 456778889999999999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-------------CCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-------------SKPSHTVDAHTAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-------------~~~~~~~~~h~~~I~sl~~sp~g~~lla 745 (860)
+.+++++|+.||. |++||+++... ........+|...|.+++|+|++.+ ++
T Consensus 198 ~~~ll~~~~~dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~ 261 (408)
T 4a11_B 198 YDYILATASADSR---------------VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LL 261 (408)
T ss_dssp CTTEEEEEETTSC---------------EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EE
T ss_pred CCcEEEEEcCCCc---------------EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EE
Confidence 9988999999999 99999876531 0111222578999999999999985 89
Q ss_pred EeeCCCcEEEEeCCCCce----------------------------------------------eeEEeccCCCceEEEE
Q psy4578 746 TGSADKTVALWDLRNLKL----------------------------------------------KLHSFESHKDEIFQVQ 779 (860)
Q Consensus 746 sgs~Dg~I~IWDl~~~~~----------------------------------------------~~~~~~~h~~~V~~l~ 779 (860)
+|+.||.|++||++++.. .+..+.+|...|++++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 999999999999876431 2455677999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSKIGEE 808 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~ 808 (860)
|+|+++. |++|+.||.|++||+.+.+..
T Consensus 342 ~s~~~~~-l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 342 FQSNFQE-LYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EETTTTE-EEEEETTSCEEEEEECC----
T ss_pred EcCCCCE-EEEECCCCeEEEEeCCCCCcc
Confidence 9999985 899999999999999986543
No 117
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.83 E-value=1.4e-18 Score=198.02 Aligned_cols=218 Identities=21% Similarity=0.385 Sum_probs=178.6
Q ss_pred EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+|+....+ +..+.+|.+.|.+++|+ ++++++|+.||.|++||+.++ .....+.+|...|.++.|+ +.
T Consensus 140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~- 210 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLH--EK- 210 (445)
T ss_dssp CEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEE--TT-
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC---cEEEEECCCCCcEEEEEec--CC-
Confidence 35556655444 44455677899999997 468999999999999999884 5577788999999999996 44
Q ss_pred EEEEEeCCCceeeeccccc-------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578 682 ILATGSADKTQFEVEEEEE-------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~-------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~ 736 (860)
.+++|+.||++.+|+.... +..+|.|++||++++ ..+..+.+|...|.+++|
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT---EEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC---cEeEEecCCCCceEEEEE
Confidence 4899999999999987643 245889999999886 667788899999999999
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578 737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~ 816 (860)
++. .+++|+.||.|++||++++.. +..+.+|...+.++.++ +. ++++|+.||.|++||++++..
T Consensus 288 --~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~~~~--------- 351 (445)
T 2ovr_B 288 --DGI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTGQC--------- 351 (445)
T ss_dssp --CSS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCE---------
T ss_pred --CCC-EEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCCCcE---------
Confidence 566 489999999999999999887 78889999999998885 44 589999999999999987433
Q ss_pred CCCccEEEec---CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 817 GPPELLFIHG---GHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 817 ~~~~~i~~~~---~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+..+. .|...|++++|+ +. ++++|+.||.|++
T Consensus 352 -----~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~v~i 386 (445)
T 2ovr_B 352 -----LQTLQGPNKHQSAVTCLQFN--KN-FVITSSDDGTVKL 386 (445)
T ss_dssp -----EEEECSTTSCSSCEEEEEEC--SS-EEEEEETTSEEEE
T ss_pred -----EEEEccCCCCCCCEEEEEEC--CC-EEEEEeCCCeEEE
Confidence 33333 388999999996 45 5889999999986
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.2e-19 Score=204.04 Aligned_cols=190 Identities=12% Similarity=0.203 Sum_probs=143.7
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----------------------------ccCeeeccCCCCCeeEE
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----------------------------SKPSHTVDAHTAEVNCL 673 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----------------------------~~~~~~~~~h~~~V~~l 673 (860)
..|.+++|+| +|.++|+++.|++|+ |...+.. ......+ .|...|.++
T Consensus 16 ~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v 91 (588)
T 2j04_A 16 DWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC 91 (588)
T ss_dssp SSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred ccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence 5688999998 888899999998885 3222110 0111111 457889999
Q ss_pred EEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC-----CeEEEEEcCCCCcEEEEee
Q psy4578 674 SFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGS 748 (860)
Q Consensus 674 ~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~-----~I~sl~~sp~g~~llasgs 748 (860)
+|+|+|.. +|+++.||. |++||... .+..+. |.. .|.+++|||+|++ ||+|+
T Consensus 92 awSPdG~~-LAs~s~dg~---------------V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~-LAsgs 148 (588)
T 2j04_A 92 KPSPIDDW-MAVLSNNGN---------------VSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESS-IVVGN 148 (588)
T ss_dssp EECSSSSC-EEEEETTSC---------------EEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSC-EEEEE
T ss_pred EECCCCCE-EEEEeCCCc---------------EEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCE-EEEEc
Confidence 99999995 899999999 99999543 444455 554 5999999999996 99999
Q ss_pred CCCcEEEEeCCCCce------eeEEe----ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 749 ADKTVALWDLRNLKL------KLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 749 ~Dg~I~IWDl~~~~~------~~~~~----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
.||+|+|||+.++.. .+..+ .+|.+.|.+++|+|+| +++++.|++|++||+......
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~---------- 215 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ---------- 215 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC----------
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc----------
Confidence 999999999998752 25665 6788899999999999 678889999999999874421
Q ss_pred CccEEEe-cCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 819 PELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 819 ~~~i~~~-~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.....+ .+|...|.+++|+ |.+ +++++ ++.|++
T Consensus 216 -~~~~tL~~~h~~~V~svaFs--g~~-LASa~-~~tIkL 249 (588)
T 2j04_A 216 -PVSRMIQNASRRKITDLKIV--DYK-VVLTC-PGYVHK 249 (588)
T ss_dssp -CCEEEEECCCSSCCCCEEEE--TTE-EEEEC-SSEEEE
T ss_pred -cceeeecccccCcEEEEEEE--CCE-EEEEe-CCeEEE
Confidence 122334 4788999999999 564 65666 577775
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.82 E-value=9.9e-20 Score=204.84 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=146.0
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeeccCCCCCeeEEEEcc--------CCCeEEEEEeCCCce
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNP--------YSEYILATGSADKTQ 692 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~~~h~~~V~~l~~sp--------~g~~llasgs~Dg~i 692 (860)
....+.+.+.++.++++|+.|++|++||..++... ..+..+.+|.+.|++++|+| +++ +|++|+.|++
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~t- 167 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCT- 167 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSE-
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCe-
Confidence 33344444557889999999999999999875321 23456789999999999998 565 6999999999
Q ss_pred eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-------
Q psy4578 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL------- 765 (860)
Q Consensus 693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~------- 765 (860)
|++||+.++ .....+.+|...|.+++|+|++..+|++|+.||+|++||++++....
T Consensus 168 --------------v~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 168 --------------LIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp --------------EEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred --------------EEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 999999876 55667778999999999999987679999999999999998765311
Q ss_pred -----------------EEeccCCCceEEEEEc-CCCCCEEEEEECCCcEEEEECCCCCcccccccccCC-----CCccE
Q psy4578 766 -----------------HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG-----PPELL 822 (860)
Q Consensus 766 -----------------~~~~~h~~~V~~l~fs-p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~-----~~~~i 822 (860)
....+|...+.++.|+ |+|.. +++++.|+++++||+............... .....
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence 1124577889999987 78875 889999999999999876544333211110 01111
Q ss_pred EEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 823 ~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.....+...+..+.+.+.+..++++|+.||.|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l 343 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL 343 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence 2222233333334444456667889999999986
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.82 E-value=2.5e-18 Score=185.09 Aligned_cols=196 Identities=22% Similarity=0.422 Sum_probs=160.6
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY 703 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~ 703 (860)
+++|+|++ + ++|++|. |++|+|||+.+++... .....+|...|++++|+|++++ +++|+.||+
T Consensus 28 ~~~l~WS~-~-~~lAvg~-D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~-l~sgs~Dg~------------ 90 (318)
T 4ggc_A 28 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNY-LAVGTSSAE------------ 90 (318)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSE-EEEEETTSE------------
T ss_pred ceEEEECC-C-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCE-EEEEECCCc------------
Confidence 46899997 3 4777665 8999999999864322 2234578889999999999995 899999999
Q ss_pred CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 783 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~ 783 (860)
|++||++++ +.+..+.+|...+.++.+. +. ++++|+.++.+++|+.......+..+.+|...+..+.|+++
T Consensus 91 ---v~iw~~~~~---~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 91 ---VQLWDVQQQ---KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp ---EEEEETTTT---EEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred ---EEEeecCCc---eeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 999999987 6778888999988877665 44 69999999999999999887778888999999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE--EEEeCCCeEee
Q psy4578 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNIMQK 856 (860)
Q Consensus 784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll--asgs~Dg~IrI 856 (860)
++. +++++.||.|++||+++++.. .........|.+.|..++++|++..++ ++++.++.|++
T Consensus 162 ~~~-l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 162 GRH-LASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp SSE-EEEEETTSCEEEEESSCBTTB----------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred CCE-EEEEecCcceeEEECCCCccc----------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 985 899999999999999875432 223445567888999999999887655 46677888876
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=194.72 Aligned_cols=193 Identities=20% Similarity=0.236 Sum_probs=151.9
Q ss_pred EEEeeccch-h-hh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE--cc
Q psy4578 603 VMYLENKTR-A-QI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NP 677 (860)
Q Consensus 603 il~l~n~~~-~-~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~--sp 677 (860)
.+.+|+... . .+ ..+..|.+.|.+++|+| ++.+|++|+.||.|++||+.++. . ....+|...|++++| +|
T Consensus 65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~-~~~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQ---A-IQIAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE---E-EEEEECSSCEEEEEEEECS
T ss_pred cEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCC---c-eeeccccCceEEEEEEeCC
Confidence 355565543 2 22 34556788999999998 88899999999999999998743 2 335679999999999 88
Q ss_pred CCCeEEEEEeCCCceeeeccccc---------------------------------------------------------
Q psy4578 678 YSEYILATGSADKTQFEVEEEEE--------------------------------------------------------- 700 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~--------------------------------------------------------- 700 (860)
++. ++++|+.||.+.+|+....
T Consensus 140 ~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T 3mmy_A 140 NYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218 (368)
T ss_dssp SCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred CCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence 887 5899999999999986432
Q ss_pred ---------------ccCCCcEEEEeCCCCCCCCCeeeecCCCC------------CeEEEEEcCCCCcEEEEeeCCCcE
Q psy4578 701 ---------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTA------------EVNCLSFNPYSEYILATGSADKTV 753 (860)
Q Consensus 701 ---------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~------------~I~sl~~sp~g~~llasgs~Dg~I 753 (860)
+..+|.|++||++..........+.+|.. .|++++|+|++.+ |++|+.||.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i 297 (368)
T 3mmy_A 219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRF 297 (368)
T ss_dssp EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCE
T ss_pred EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeE
Confidence 12356677777766432233455666665 7999999999985 8999999999
Q ss_pred EEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 754 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 754 ~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
++||++++.. +..+.+|...|++++|+|+|++ |++|+.|+..+.|++..
T Consensus 298 ~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 298 SFWDKDARTK-LKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTTTEE-EEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCC
T ss_pred EEEECCCCcE-EEEecCCCCCceEEEECCCCCe-EEEEecccccccccccC
Confidence 9999999887 7888999999999999999986 88999888666665544
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.80 E-value=4.5e-18 Score=192.35 Aligned_cols=227 Identities=14% Similarity=0.148 Sum_probs=175.3
Q ss_pred EEeeccchhhhh------hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578 604 MYLENKTRAQIC------QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 677 (860)
Q Consensus 604 l~l~n~~~~~l~------~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp 677 (860)
+++|+....+.. ....|.+.|.+++|++ ++.++++++.||.|++||+.++ .....+..|...+.+++|+|
T Consensus 146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL---AYKATVDLTGKWSKILLYDP 221 (433)
T ss_dssp EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC---CEEEEEECSSSSEEEEEEET
T ss_pred EEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc---eEEEEEcCCCCCeeEEEEcC
Confidence 455555444333 2345677899999987 7889999999999999999874 44566668889999999999
Q ss_pred CCCeEEEEEeCCCceeeeccccc--------------------------cc--------CCCcEEEEeCCCCCCCCCeee
Q psy4578 678 YSEYILATGSADKTQFEVEEEEE--------------------------EN--------YDQKLMIWDTRSHNVSKPSHT 723 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~--------------------------~~--------~dg~I~iwDl~~~~~~~~~~~ 723 (860)
+++.++++++.|+.+.+|+.... +. .++.|++||+.++ +.+..
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~ 298 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDT 298 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEE
T ss_pred CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEee
Confidence 99987788888999999986532 01 3678999999876 33333
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC----------
Q psy4578 724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT---------- 793 (860)
Q Consensus 724 ~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~---------- 793 (860)
..|...+.+++|+|+++.++++++.|+.|++||+.+++. ...+. +...+.+++|+|+|+. +++++.
T Consensus 299 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 299 -IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYL 374 (433)
T ss_dssp -EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTT
T ss_pred -ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccc
Confidence 345668899999999988788889999999999998775 55554 6788999999999986 555554
Q ss_pred -----CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 794 -----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 794 -----Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
||.|++||+.+.+. +..... ...+.+++|+|+|++++++++.|+.|++
T Consensus 375 ~~g~~dg~v~~~d~~~~~~--------------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTV--------------KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp SCCSSCCEEEEEETTTTEE--------------EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred cccccceEEEEEECCCCcE--------------EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 57999999987432 233333 4578999999999987777777898876
No 123
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.78 E-value=1.3e-17 Score=181.22 Aligned_cols=199 Identities=23% Similarity=0.335 Sum_probs=148.4
Q ss_pred EEEeCCCcEEEE--EcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------
Q psy4578 638 GSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--------------- 700 (860)
Q Consensus 638 asgs~DG~I~IW--d~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--------------- 700 (860)
.+|...|+..+| ...+ +......++.+|.+.|++|+|+|++..+|+||+.||+|.+|+....
T Consensus 8 ~~g~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86 (340)
T ss_dssp -------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred ccccCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence 344444553333 3322 2234456789999999999999986557999999999888875421
Q ss_pred -----------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578 701 -----------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 701 -----------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~ 763 (860)
+..|+.|++|+.... ........+...+..+.+++++.. +++|+.||.+++||......
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEE
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeeccc---ceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCce
Confidence 235677888887765 445555667778888888888885 89999999999999988776
Q ss_pred eeEEeccCCCceEEEEEcCCCC-CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578 764 KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 764 ~~~~~~~h~~~V~~l~fsp~g~-~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
......+|...+.+++|++++. .++++++.|+.|++||+++ ...+..+.+|.+.|++++|+|+++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCC
Confidence 5566778999999999998764 3578999999999999987 345667778999999999999999
Q ss_pred eEEEEEeCCCeEee
Q psy4578 843 WVICSVSEDNIMQK 856 (860)
Q Consensus 843 ~Llasgs~Dg~IrI 856 (860)
++++|+.|+.|++
T Consensus 229 -~l~s~s~Dg~i~i 241 (340)
T 4aow_A 229 -LCASGGKDGQAML 241 (340)
T ss_dssp -EEEEEETTCEEEE
T ss_pred -EEEEEeCCCeEEE
Confidence 5779999999986
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.77 E-value=6.1e-18 Score=191.28 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=162.6
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe--eeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS--HTVDAHTAEVNCLSFNPYSEYILATGSADKTQ 692 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~--~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i 692 (860)
...+.....+.+++|+| ++.++++++.|+.|++||+.+++..... ..+.+|.+.|.+++|++++. ++++++.|+.
T Consensus 116 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~- 192 (433)
T 3bws_A 116 ISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANA- 192 (433)
T ss_dssp EEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTE-
T ss_pred EEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCE-
Confidence 33344456678999999 8888999999999999999886432111 14457889999999999887 6899998888
Q ss_pred eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK 772 (860)
Q Consensus 693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~ 772 (860)
|++||+.++ ..+..+..|...+.+++|+|++..++++++.|+.|++||++++.. +..+.. .
T Consensus 193 --------------v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~ 253 (433)
T 3bws_A 193 --------------VHVFDLKTL---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-I 253 (433)
T ss_dssp --------------EEEEETTTC---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-C
T ss_pred --------------EEEEECCCc---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-C
Confidence 999999876 566677788999999999999997667777899999999998875 555554 4
Q ss_pred CceEEEEEcCCCCCEEEEEE--------CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578 773 DEIFQVQWSPHNETILASSG--------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV 844 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs--------~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L 844 (860)
..+.+++|+|+|+. +++++ .||.|++||+.+++. +.. ..|...+.+++|+|+++++
T Consensus 254 ~~~~~~~~~~~g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~--------------~~~-~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 254 GLPRGLLLSKDGKE-LYIAQFSASNQESGGGRLGIYSMDKEKL--------------IDT-IGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp SEEEEEEECTTSSE-EEEEEEESCTTCSCCEEEEEEETTTTEE--------------EEE-EEEEECEEEEEECSSTTEE
T ss_pred CCceEEEEcCCCCE-EEEEECCCCccccCCCeEEEEECCCCcE--------------Eee-ccCCCCcceEEECCCCCEE
Confidence 56999999999986 55665 588999999987432 111 2455678999999999988
Q ss_pred EEEEeCCCeEee
Q psy4578 845 ICSVSEDNIMQK 856 (860)
Q Consensus 845 lasgs~Dg~IrI 856 (860)
+++++.|+.|++
T Consensus 318 ~~~~~~~~~v~v 329 (433)
T 3bws_A 318 YVSDMCCSKIEV 329 (433)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEecCCCEEEE
Confidence 999999998876
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.76 E-value=7.1e-18 Score=182.81 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=124.1
Q ss_pred hhhhhhcccceeeeEeec--cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC---CCeeEEEEccCCCeEEEEEeC
Q psy4578 614 ICQLLDKLRLLIDVAWHL--LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT---AEVNCLSFNPYSEYILATGSA 688 (860)
Q Consensus 614 l~~l~~~~~~V~~v~~sp--~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~---~~V~~l~~sp~g~~llasgs~ 688 (860)
+.....|...++.++|++ .++.+|++|+.|++|+|||+.++ +.+.++.+|. ..+.+++|+|+|.. +++++.
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~-lvs~s~ 246 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLL-FIVLSH 246 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEE-EEEEC-
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCE-EEEecc
Confidence 334456667788888887 35689999999999999999985 4566666543 46788899999985 555443
Q ss_pred CCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~ 763 (860)
+..+ | ....+..|+.|++||..++ ..+..+ .+|...+.+..++ +. ++++|+.||+|+|||+.+++.
T Consensus 247 ~~~~--w-~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 247 PCAK--E-SESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp --------------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSE
T ss_pred CCCc--c-eeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcE
Confidence 3221 1 1123345566999999876 333222 4676665555544 55 599999999999999999997
Q ss_pred eeEEeccCCCceE-EEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578 764 KLHSFESHKDEIF-QVQWSPHNETILASSGTDRRLHVWDL 802 (860)
Q Consensus 764 ~~~~~~~h~~~V~-~l~fsp~g~~lL~tgs~Dg~I~iWdl 802 (860)
+.++.+|...+. +++|+|+|++ |++|+.|++|++||+
T Consensus 318 -l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 -TALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY 355 (356)
T ss_dssp -EEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred -EEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence 888998887655 5899999985 899999999999995
No 126
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=6.6e-18 Score=192.78 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=148.5
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-------ccCee-----eccCCCCCeeEEEEccCCCeEEE---EE
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-------SKPSH-----TVDAHTAEVNCLSFNPYSEYILA---TG 686 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-------~~~~~-----~~~~h~~~V~~l~~sp~g~~lla---sg 686 (860)
..++.+++++ .+.++++|+.|| +++|+...... ..... ....+...|++++|+|+|+++++ +|
T Consensus 37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 3588999998 677888888887 99987642100 00010 11235667999999999997444 67
Q ss_pred eCCCceeeecccccccCCCcEEEEeCCCC-----CC---CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 687 SADKTQFEVEEEEEENYDQKLMIWDTRSH-----NV---SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~-----~~---~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
+.|++ |++||+.+. .. ...+..+.+|...|.+++|+|++..++++|+.||+|++||+
T Consensus 115 s~d~~---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 115 EYGSI---------------IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp TTEEE---------------EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred CCCce---------------EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 77887 999998654 11 11245567799999999999985557999999999999999
Q ss_pred CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s 838 (860)
+++.. .....+|...|++++|+|+|.+ |++|+.||.|++||++ +.......... .....|...|.+++|+
T Consensus 180 ~~~~~-~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~-------~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 180 TETVK-VCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPP-------FYESDHPVRVLDVLWI 249 (434)
T ss_dssp SSSEE-EEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCT-------TCCTTSCEEEEEEEEE
T ss_pred CCCcc-eeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCc-------ccCCCCceeEEEEEEe
Confidence 98865 5556678899999999999986 8899999999999988 22211111000 0011345589999999
Q ss_pred cCCCeEEEEEeCCCe
Q psy4578 839 PNEPWVICSVSEDNI 853 (860)
Q Consensus 839 pdg~~Llasgs~Dg~ 853 (860)
+++.++++.++.||.
T Consensus 250 ~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 250 GTYVFAIVYAAADGT 264 (434)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred cCceEEEEEccCCCc
Confidence 999887777777654
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.75 E-value=5.3e-17 Score=180.92 Aligned_cols=183 Identities=12% Similarity=0.146 Sum_probs=146.8
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~ 713 (860)
+.++++++.||.|++||+.++ +....+..|. .+.+++|+|++++++++++.|+. |++||+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~---------------i~v~d~~ 62 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSND---------------VSIIDTA 62 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTE---------------EEEEETT
T ss_pred CEEEEEcCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCe---------------EEEEECC
Confidence 457889999999999999874 4455555554 58999999999987788888888 9999998
Q ss_pred CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 793 (860)
Q Consensus 714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~ 793 (860)
++ +.+..+..+. .+.+++|+|++++++++++.++.|++||+.+++. +..+.. ...+.+++|+|+|+.++++++.
T Consensus 63 ~~---~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 63 TN---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp TT---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETT
T ss_pred CC---eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCC
Confidence 76 4455555444 8999999999998667777889999999999876 555554 4578999999999976688889
Q ss_pred CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
|+.|++||+.++.. +.....+ ..+.+++|+|+|++++++++.|+.|++
T Consensus 137 ~~~v~~~d~~~~~~--------------~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 137 DKTVSVINTVTKAV--------------INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp TTEEEEEETTTTEE--------------EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCcE--------------EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 99999999987432 3333333 457899999999988789999998875
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.75 E-value=2e-16 Score=179.36 Aligned_cols=211 Identities=15% Similarity=0.097 Sum_probs=157.8
Q ss_pred EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC---cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578 602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ---KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG---~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
..+++|+........+..|...|.+++|+| ++..+++++.++ .|++||+.+++. ..+..|.+.+.+++|+|+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE----EEEECCSSCEEEEEECTT
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE----EEeecCCCcccCEEEcCC
Confidence 456677766666666777888999999999 788888888775 999999987532 345667889999999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEE
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALW 756 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IW 756 (860)
|+.++++++.++. ..|++||+.++. ...+..|...+.+++|+|+|+++++++..+| .|.+|
T Consensus 234 g~~la~~~~~~g~-------------~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 234 GSKLAFALSKTGS-------------LNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp SSEEEEEECTTSS-------------CEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEecCCC-------------ceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 9986667776653 348899998752 3566778889999999999997444443455 57777
Q ss_pred eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC--CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~--Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
|+.++.. ..+..+...+.+++|+|+|+++++++.. ++.|++||+.++.. ..+..+. .+.+
T Consensus 297 d~~~~~~--~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------~~l~~~~-~~~~ 358 (415)
T 2hqs_A 297 NINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------QVLSSTF-LDET 358 (415)
T ss_dssp ETTSSCC--EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------EECCCSS-SCEE
T ss_pred ECCCCCE--EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------EEecCCC-CcCC
Confidence 9887763 4455677889999999999974444444 35899999987432 2233343 7899
Q ss_pred EEEccCCCeEEEEEeCCC
Q psy4578 835 FSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 835 i~~spdg~~Llasgs~Dg 852 (860)
++|+|+|+++++++.+++
T Consensus 359 ~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp EEECTTSSEEEEEEEETT
T ss_pred eEEcCCCCEEEEEEcCCC
Confidence 999999997766666554
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=4.7e-17 Score=185.70 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=146.8
Q ss_pred cccceeeeEeeccCCcEEE----EEeCCCcEEEEEcCCC-----C---cccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578 620 KLRLLIDVAWHLLHESLFG----SVADDQKLMIWDTRSH-----N---VSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 687 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~la----sgs~DG~I~IWd~~~~-----~---~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs 687 (860)
+.+.|.+++|+| ++.+|+ +|+.||.|+|||+.++ . .......+.+|...|++++|+|++..++++|+
T Consensus 91 ~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 345699999999 677777 7888999999998753 1 11124556779999999999998555799999
Q ss_pred CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578 688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 767 (860)
Q Consensus 688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~ 767 (860)
.||+ |++||++++ .......+|...|++++|+|+|.+ |++|+.||.|++||.+ +.. ...
T Consensus 170 ~Dg~---------------v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~-~~~ 228 (434)
T 2oit_A 170 ADGS---------------IAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQE-KKV 228 (434)
T ss_dssp TTSC---------------EEEEEESSS---EEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCE-EEE
T ss_pred CCCe---------------EEEEEcCCC---cceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-Ccc-ccc
Confidence 9999 999999986 344455678899999999999996 8999999999999998 333 333
Q ss_pred eccC-------CCceEEEEEcCCCCCEEEEEECCCc------EEEEECCCCCccc--ccccccCCCCccEEEecCccCce
Q psy4578 768 FESH-------KDEIFQVQWSPHNETILASSGTDRR------LHVWDLSKIGEEQ--STEDAEDGPPELLFIHGGHTAKI 832 (860)
Q Consensus 768 ~~~h-------~~~V~~l~fsp~g~~lL~tgs~Dg~------I~iWdl~~~~~~~--~~~~~~~~~~~~i~~~~~h~~~I 832 (860)
+..| ...|.+++|++++.+++++++.||. +++|++++.+... .+... ..+.+...+...+-
T Consensus 229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~----~~~~~~~~~~r~~~ 304 (434)
T 2oit_A 229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNF----MEPCYGSCTERQHH 304 (434)
T ss_dssp ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEEC----CCSSCCCCSSSCCC
T ss_pred ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEec----ccCCCCCCCCcCcc
Confidence 4333 3389999999988765555656643 8999998743211 11100 01111111222223
Q ss_pred EEEEEccCCCeEEEEEeCCCeEee
Q psy4578 833 SDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 833 ~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
..+.+-++.+.++++.+..+.|.|
T Consensus 305 ~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 305 YYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp EEEEEEGGGTEEEEEETTCSBCEE
T ss_pred eeeehhccCCEEEEecCCCCceeE
Confidence 344455777777777666655543
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=7.1e-16 Score=163.01 Aligned_cols=215 Identities=9% Similarity=0.040 Sum_probs=154.6
Q ss_pred ceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCC-CCCeeEEEEc
Q psy4578 599 HIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAH-TAEVNCLSFN 676 (860)
Q Consensus 599 ~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h-~~~V~~l~~s 676 (860)
.....+++|+....+...+..+...|.+++|+| ++.++++++ ++.|.+||+.+ +.. ......+ ...+.+++|+
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccccceEEC
Confidence 445567778877777777778888999999999 677888776 78999999987 533 2333344 4678999999
Q ss_pred cCCCeEEEEEeCC--CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578 677 PYSEYILATGSAD--KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754 (860)
Q Consensus 677 p~g~~llasgs~D--g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~ 754 (860)
|++++ +++++.+ +. ..|..|+..++ ....+..+ ..+.+++|+|++++++++++.|+.+.
T Consensus 94 pdg~~-l~~~~~~~~~~-------------~~l~~~~~~~~----~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 94 PDGAL-YAISDKVEFGK-------------SAIYLLPSTGG----TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp TTSSE-EEEEECTTTSS-------------CEEEEEETTCC----CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred CCCCE-EEEEEeCCCCc-------------ceEEEEECCCC----ceEEeecC-CCccceEECCCCCEEEEEECCCCceE
Confidence 99996 5555532 33 22444555443 22333333 34899999999998666888999999
Q ss_pred EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
||+++........+..+...+.+++|+|+|+.+++++..++.+++|++.... .....+..|...+..
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------SSVERITDSAYGDWF 221 (297)
T ss_dssp EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------SCEEECCCCSEEEEE
T ss_pred EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------CCcEEEecCCcccCC
Confidence 9996533222556677888999999999999755555579999999986311 123445567778999
Q ss_pred EEEccCCCeEEEEEeC
Q psy4578 835 FSWNPNEPWVICSVSE 850 (860)
Q Consensus 835 i~~spdg~~Llasgs~ 850 (860)
++|+|+|+++++++.+
T Consensus 222 ~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred eEECCCCCEEEEEEcC
Confidence 9999999976655554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=1.1e-15 Score=173.17 Aligned_cols=214 Identities=11% Similarity=0.084 Sum_probs=152.1
Q ss_pred eeEEEEeecc--chhhhh---hhhhcccceeeeEeecc-------------CCcEEEEEeCC------CcEEEEEcCCCC
Q psy4578 600 IEEVMYLENK--TRAQIC---QLLDKLRLLIDVAWHLL-------------HESLFGSVADD------QKLMIWDTRSHN 655 (860)
Q Consensus 600 l~~il~l~n~--~~~~l~---~l~~~~~~V~~v~~sp~-------------~~~~lasgs~D------G~I~IWd~~~~~ 655 (860)
....+.+|+. ..++.. .+..+...+..+++++. .+..++.++.+ +.|++||+..+
T Consensus 91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~- 169 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY- 169 (415)
T ss_dssp EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence 4445677776 544432 24455566777776641 14455555543 79999999742
Q ss_pred cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS 735 (860)
Q Consensus 656 ~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~ 735 (860)
....+.+|...+.+++|+|+|++ +++++.++. +..|++||+.+++ ...+..|...+.+++
T Consensus 170 ---~~~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~------------~~~i~~~d~~tg~----~~~l~~~~~~~~~~~ 229 (415)
T 2hqs_A 170 ---NQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESG------------RSALVIQTLANGA----VRQVASFPRHNGAPA 229 (415)
T ss_dssp ---SCEEEEEESSCEEEEEECTTSSE-EEEEECTTS------------SCEEEEEETTTCC----EEEEECCSSCEEEEE
T ss_pred ---CCEEEeCCCCcceeeEEcCCCCE-EEEEEecCC------------CcEEEEEECCCCc----EEEeecCCCcccCEE
Confidence 34566678899999999999996 666666641 2339999998763 235667888999999
Q ss_pred EcCCCCcEEEEeeCCCc--EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC-CC--cEEEEECCCCCcccc
Q psy4578 736 FNPYSEYILATGSADKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DR--RLHVWDLSKIGEEQS 810 (860)
Q Consensus 736 ~sp~g~~llasgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~-Dg--~I~iWdl~~~~~~~~ 810 (860)
|+|+|+.++++++.||. |++||+.++.. ..+..|...+.+++|+|+|++ |++++. ++ .|++||+.++..
T Consensus 230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~-l~~~s~~~g~~~i~~~d~~~~~~--- 303 (415)
T 2hqs_A 230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP--- 303 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC---
T ss_pred EcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCE-EEEEECCCCCcEEEEEECCCCCE---
Confidence 99999975557777665 99999988764 567778889999999999997 455554 55 677778776331
Q ss_pred cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
.....+...+.+++|+|+|+++++++.+++
T Consensus 304 ------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 304 ------------QRITWEGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp ------------EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ------------EEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence 122345667889999999998776666644
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=1.1e-15 Score=161.57 Aligned_cols=216 Identities=12% Similarity=0.112 Sum_probs=153.1
Q ss_pred EEEeeccch-hhhhhhhhcc--cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578 603 VMYLENKTR-AQICQLLDKL--RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 677 (860)
Q Consensus 603 il~l~n~~~-~~l~~l~~~~--~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp 677 (860)
.+++|+... .+...+...+ ..+.+++|+| ++..+++++ .++...||.+.... .....+..+ ..+.+++|+|
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~sp 138 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN-LPSYWHGWSP 138 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS-SSEEEEEECT
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC-CCccceEECC
Confidence 456666655 5554444333 6789999999 677888887 44566666654321 112333333 3489999999
Q ss_pred CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578 678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD 757 (860)
++++++++++.++. +++|++.... .....+..|...+.+++|+|+|.++++++..++.+.+|+
T Consensus 139 dg~~l~~~~~~~~~---------------~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 139 DGKSFTYCGIRDQV---------------FDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp TSSEEEEEEEETTE---------------EEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCEEEEEECCCCc---------------eEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 99987778888887 8888865321 334556678889999999999997555666799999999
Q ss_pred CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-----------CcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578 758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 826 (860)
Q Consensus 758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~ 826 (860)
++........+..|...+.+++|+|+|++ |++++.+ +.|++||+.+... ..+....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------~~~~~~~ 268 (297)
T 2ojh_A 202 VRVDGSSVERITDSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------------ETLFDLF 268 (297)
T ss_dssp EETTSSCEEECCCCSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC------------EEEEEEE
T ss_pred ECCCCCCcEEEecCCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc------------eeeeccC
Confidence 87333236677778888999999999997 5555544 5699999887432 2344445
Q ss_pred CccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 827 GHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 827 ~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
+|...+.+++|+|+|+++++++.+++
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred CCCcccccceECCCCCEEEEEEeccC
Confidence 67888999999999998776666654
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=1.6e-15 Score=164.65 Aligned_cols=228 Identities=9% Similarity=0.143 Sum_probs=155.1
Q ss_pred hhhhhcccceeeeEeeccCCcEEEEEeCC-CcEEEEEcC--CCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578 615 CQLLDKLRLLIDVAWHLLHESLFGSVADD-QKLMIWDTR--SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691 (860)
Q Consensus 615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~D-G~I~IWd~~--~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~ 691 (860)
.....+...+.+++|+| +++.+++++.+ +.|.+|++. ++.. ..+..+..+. .+.+++|+|+++++++++..++.
T Consensus 31 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~ 107 (343)
T 1ri6_A 31 TQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGN 107 (343)
T ss_dssp EEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTE
T ss_pred eeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEEEcCCCCEEEEEecCCCe
Confidence 34455667899999999 67766666665 999999997 4322 2333443333 78999999999986677767888
Q ss_pred eeeecc---ccc---------------------------ccCCCcEEEEeCCCCCCCCCee--eec-CCCCCeEEEEEcC
Q psy4578 692 QFEVEE---EEE---------------------------ENYDQKLMIWDTRSHNVSKPSH--TVD-AHTAEVNCLSFNP 738 (860)
Q Consensus 692 i~~~~~---~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~--~~~-~h~~~I~sl~~sp 738 (860)
+.+|+. ... ...++.|.+||+.+........ ... .....+.+++|+|
T Consensus 108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence 999887 211 1146789999998621111111 222 2345788999999
Q ss_pred CCCcEEEEeeCCCcEEEEeCCC--Ccee-eEEec----cC--CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578 739 YSEYILATGSADKTVALWDLRN--LKLK-LHSFE----SH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 809 (860)
Q Consensus 739 ~g~~llasgs~Dg~I~IWDl~~--~~~~-~~~~~----~h--~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~ 809 (860)
++.++++++..++.|.+||++. +... ..... ++ ...+.+++|+|+|+++++++..++.|.+||+.....
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-- 265 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-- 265 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC--
Confidence 9997667777899999999964 3221 11221 11 235778999999997666777899999999974111
Q ss_pred ccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
....+.....+.. +.+++|+|+|+++++++..++.+.+
T Consensus 266 --------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 266 --------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp --------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEE
T ss_pred --------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEE
Confidence 1122333333333 8899999999987877767888775
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=1.2e-14 Score=159.50 Aligned_cols=210 Identities=12% Similarity=0.128 Sum_probs=144.9
Q ss_pred hcccceeeeEeeccCCcEEEEEe-CCCcEEEEEcCCCCcccCeeeccC---------CCCCeeEEEEccCCCeEEEEEeC
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFNPYSEYILATGSA 688 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs-~DG~I~IWd~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~g~~llasgs~ 688 (860)
.+...+..++|+| +++++++++ .++.|.+|++........+..+.. +...+.+++|+|+|+ +++++..
T Consensus 83 ~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 83 APGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred cCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 3556789999999 666666666 789999999964222222222211 123588999999999 7888777
Q ss_pred CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--Ccee-
Q psy4578 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKLK- 764 (860)
Q Consensus 689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~~~- 764 (860)
++. |.+||+...........+.. ....+..++|+|+|+++++++..++.|.+|++.. +...
T Consensus 161 ~~~---------------v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 161 SDK---------------VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp TTE---------------EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCE---------------EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 777 99999883211112222222 2336788999999998777778899999999874 3321
Q ss_pred eEEeccCC------CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578 765 LHSFESHK------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838 (860)
Q Consensus 765 ~~~~~~h~------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s 838 (860)
........ ..+..++|+|+|+++++++..++.|.+|++..... ...+.....+...+.+++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~s 294 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-----------LTLIQQISTEGDFPRDFDLD 294 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-----------EEEEEEEECSSSCCCEEEEC
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-----------EEEeEEEecCCCCcCeEEEC
Confidence 22222222 45889999999998667788899999999874211 12344444556678899999
Q ss_pred cCCCeEEEEEeCCCeEee
Q psy4578 839 PNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 839 pdg~~Llasgs~Dg~IrI 856 (860)
|+|+++++++..++.+.+
T Consensus 295 pdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp TTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEcCCCcEEE
Confidence 999988877777777764
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.63 E-value=2.3e-14 Score=156.65 Aligned_cols=217 Identities=10% Similarity=0.080 Sum_probs=157.8
Q ss_pred eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---------Cee
Q psy4578 601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---------EVN 671 (860)
Q Consensus 601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---------~V~ 671 (860)
...++.++....+..........+.+++|+|+++.+++++..++.|.+||..+++. ...+..+.. .+.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---KGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---EEEEecCCCccccccCCCCCc
Confidence 34566677666666666666667899999995455667777789999999988543 333333221 278
Q ss_pred EEEEccCCCeEEEEE-eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578 672 CLSFNPYSEYILATG-SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD 750 (860)
Q Consensus 672 ~l~~sp~g~~llasg-s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D 750 (860)
+++|+|+|+.+++++ +.++. |.+||..++ +....+..+...+.+++|+|+|++ +++++.+
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~---------------i~~~d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~ 205 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESV---------------IWVVDGGNI---KLKTAIQNTGKMSTGLALDSEGKR-LYTTNAD 205 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCE---------------EEEEETTTT---EEEEEECCCCTTCCCCEEETTTTE-EEEECTT
T ss_pred eEEECCCCCEEEEEecCCCce---------------EEEEcCCCC---ceEEEecCCCCccceEEECCCCCE-EEEEcCC
Confidence 999999999766665 34666 999999876 445555545666889999999996 6677789
Q ss_pred CcEEEEeCCCCceeeEEecc----CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578 751 KTVALWDLRNLKLKLHSFES----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 826 (860)
Q Consensus 751 g~I~IWDl~~~~~~~~~~~~----h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~ 826 (860)
+.|.+||..++.. ...+.. +...+.+++|+|+|+++++++..++.|.+||..+++.... ..
T Consensus 206 ~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------------~~ 270 (353)
T 3vgz_A 206 GELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK--------------VA 270 (353)
T ss_dssp SEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--------------EE
T ss_pred CeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------------EE
Confidence 9999999998876 444442 5567889999999997666666679999999987543221 11
Q ss_pred CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
... ..+++|+|+|+++++++..++.|.+
T Consensus 271 ~~~--~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 271 APE--SLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp CSS--CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred cCC--CceEEECCCCCEEEEEECCCCeEEE
Confidence 111 2568999999988888877887765
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.62 E-value=2.4e-14 Score=157.02 Aligned_cols=238 Identities=9% Similarity=0.081 Sum_probs=153.8
Q ss_pred cceeecccceeEEEEeeccchhhhh--hhhhcccceeeeEeeccCCcEEEEEeC--CCcEEEEEcCCCCcccCeeeccCC
Q psy4578 591 QGYFKGTHHIEEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLHESLFGSVAD--DQKLMIWDTRSHNVSKPSHTVDAH 666 (860)
Q Consensus 591 ~G~~~Gs~~l~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~~~~lasgs~--DG~I~IWd~~~~~~~~~~~~~~~h 666 (860)
.|.+.+.......++.++...+.+. ....+...+..++|+| ++++++++.. ++.|.+|++.++.. ..+..+..+
T Consensus 7 vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~ 84 (347)
T 3hfq_A 7 FGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAP 84 (347)
T ss_dssp EEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEE
T ss_pred EEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcE-EEeeeeecC
Confidence 3444433333334555555444432 2344557788999999 5555555443 68999999976432 334444456
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---------CCCCeEEEEEc
Q psy4578 667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFN 737 (860)
Q Consensus 667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---------h~~~I~sl~~s 737 (860)
...+..++|+|+|+++++++..++. +.+||+........+..+.. +...+.+++|+
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~---------------v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGT---------------AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTE---------------EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCE---------------EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 7788999999999975555557777 88888853321122222221 22358899999
Q ss_pred CCCCcEEEEeeCCCcEEEEeCC-CCcee-eEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578 738 PYSEYILATGSADKTVALWDLR-NLKLK-LHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814 (860)
Q Consensus 738 p~g~~llasgs~Dg~I~IWDl~-~~~~~-~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~ 814 (860)
|+|+ +++++..++.|.+||+. ++... ...+.. ....+..++|+|+|+++++++..++.|.+|++......
T Consensus 150 pdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~------ 222 (347)
T 3hfq_A 150 PDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA------ 222 (347)
T ss_dssp TTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE------
T ss_pred CCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc------
Confidence 9999 78888889999999998 44321 122222 23467889999999976766778899999998751110
Q ss_pred cCCCCccEEEecCc------cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 815 EDGPPELLFIHGGH------TAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 815 ~~~~~~~i~~~~~h------~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
...+...... ...+..++|+|||+++++++..++.|.+
T Consensus 223 ----~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 223 ----FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp ----EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred ----eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 0111111111 1458899999999988888887877764
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.61 E-value=3.1e-14 Score=154.61 Aligned_cols=222 Identities=9% Similarity=0.074 Sum_probs=148.9
Q ss_pred EEEeeccchhhhhhhhh-cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 603 VMYLENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.+.+++....++..... +...+ +++|+|++..+++++..++.|.+||..++.. ....+..+..+..+++|+|+|++
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~ 97 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQEGQSSMADVDITPDDQF 97 (331)
T ss_dssp EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEEECSSCCCCEEECTTSSE
T ss_pred eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecccCCCCccceEECCCCCE
Confidence 34455555555443333 33455 9999994443555555589999999988532 14445555666656999999997
Q ss_pred EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc-EEEEeCCC
Q psy4578 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT-VALWDLRN 760 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~-I~IWDl~~ 760 (860)
++ ++..++ ..+.|.+||+.++ ..+..+. +.....+++|+|+|+++++++..++. |.+|++..
T Consensus 98 l~-~~~~~~------------~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 98 AV-TVTGLN------------HPFNMQSYSFLKN---KFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp EE-ECCCSS------------SSCEEEEEETTTT---EEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred EE-EecCCC------------CcccEEEEECCCC---CeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 55 444332 0113999999876 3344444 34567999999999987777777788 99999986
Q ss_pred Cceee---EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 761 LKLKL---HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 761 ~~~~~---~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
..... ...........+++|+|+|+++++++..++.|.+||+.++... ..+.... ....+.+++|
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-----------~~~~~~~-~~~~~~~~~~ 228 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-----------TLLNAVG-TNNLPGTIVV 228 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-----------EEEEEEE-CSSCCCCEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-----------ceeeecc-CCCCCceEEE
Confidence 44311 1222345568999999999976777778999999999874431 0122222 2356788999
Q ss_pred ccCCCeEEEEEeCCCeEee
Q psy4578 838 NPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 838 spdg~~Llasgs~Dg~IrI 856 (860)
+|+|+++++++..++.|.+
T Consensus 229 spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp CTTSSEEEEECSSEEEEEE
T ss_pred CCCCCEEEEEEcCCCEEEE
Confidence 9999988877776666654
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=5.4e-14 Score=164.97 Aligned_cols=219 Identities=11% Similarity=0.125 Sum_probs=155.9
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEc--CCCCcccCeeeccCCCCCeeEEEEcc---
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDT--RSHNVSKPSHTVDAHTAEVNCLSFNP--- 677 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~--~~~~~~~~~~~~~~h~~~V~~l~~sp--- 677 (860)
.+.+|+....++...+.....+.+++|+| +++++++++.|++|++||+ .++ +.+..+. +...+..++|+|
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~ 234 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKG 234 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTT
T ss_pred eEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcC
Confidence 34555666666655555333488999999 7889999999999999999 553 4455554 455689999999
Q ss_pred -CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------C-CCCeEEEEEcCCCCcEEE
Q psy4578 678 -YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------H-TAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 678 -~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h-~~~I~sl~~sp~g~~lla 745 (860)
+|+++++++..+++ |.+||..+. +.+..+.. | ...+.++.++|++..+++
T Consensus 235 ~dg~~l~v~~~~~~~---------------v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQ---------------FAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp CTTTEEEEEEEESSE---------------EEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCCCEEEEEEccCCe---------------EEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 99975555556787 999998876 44444432 2 237899999999988888
Q ss_pred EeeCCCcEEEEeCCCCceee-EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578 746 TGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 824 (860)
Q Consensus 746 sgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~ 824 (860)
+...+|.|.+||..+..... ... .+...+.+++|+|+|+++++++..+++|.+||..+++....+.. .
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~----------g 365 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV----------G 365 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC----------S
T ss_pred EECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc----------C
Confidence 99999999999998765422 233 35677889999999998676777799999999998554322210 0
Q ss_pred ecCccCceEEEEEccCCCeEEEEEe-CCCeEee
Q psy4578 825 HGGHTAKISDFSWNPNEPWVICSVS-EDNIMQK 856 (860)
Q Consensus 825 ~~~h~~~I~~i~~spdg~~Llasgs-~Dg~IrI 856 (860)
...|.+....+ ++|++..++++++ .|++|.+
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 01255444333 5787555777776 5777774
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.57 E-value=2.3e-13 Score=147.65 Aligned_cols=195 Identities=8% Similarity=0.109 Sum_probs=140.4
Q ss_pred eEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK 706 (860)
Q Consensus 627 v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~ 706 (860)
..|.+.++..+++++.++.|.+||..+++. ...+..+...+ +++|+|+|+++++++..++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~--------------- 63 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---LNQITLGYDFV-DTAITSDCSNVVVTSDFCQT--------------- 63 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---EEEEECCCCEE-EEEECSSSCEEEEEESTTCE---------------
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe---------------
Confidence 345555667788999999999999988543 34444455566 99999999987777766777
Q ss_pred EEEEeCCCCCCCCC-eeeecCCCCCeEEEEEcCCCCcEEEEeeCC-C--cEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578 707 LMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNPYSEYILATGSAD-K--TVALWDLRNLKLKLHSFESHKDEIFQVQWSP 782 (860)
Q Consensus 707 I~iwDl~~~~~~~~-~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g--~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp 782 (860)
|.+||..++ .. ...+..+.....+++|+|+|++ ++++..+ + .|.+||+.++.. +..+.. .....+++|+|
T Consensus 64 i~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 64 LVQIETQLE---PPKVVAIQEGQSSMADVDITPDDQF-AVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp EEEEECSSS---SCEEEEEEECSSCCCCEEECTTSSE-EEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECT
T ss_pred EEEEECCCC---ceeEEecccCCCCccceEECCCCCE-EEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECC
Confidence 999999886 33 5555556666655999999997 5555555 3 899999998876 555553 45578999999
Q ss_pred CCCCEEEEEECCCc-EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 783 HNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 783 ~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+|+++++++..++. |.+|++......... . .... .....+..++|+|+|+++++++..++.|++
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~--------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDT--------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEE--------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeec--------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 99987777777788 999999863321110 0 1111 234557899999999988888888888775
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.56 E-value=6e-13 Score=146.77 Aligned_cols=238 Identities=8% Similarity=0.050 Sum_probs=149.9
Q ss_pred cceeecccceeEEEEeeccchhhhh--hhhhcccceeeeEeeccCCcEEEEEeCC----CcEEEEEcCCC-CcccCeeec
Q psy4578 591 QGYFKGTHHIEEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLHESLFGSVADD----QKLMIWDTRSH-NVSKPSHTV 663 (860)
Q Consensus 591 ~G~~~Gs~~l~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~~~~lasgs~D----G~I~IWd~~~~-~~~~~~~~~ 663 (860)
.|.+.+..+....++..+...+++. ... +...+..++|+| +++++++++.+ |.|.+|++... .....+...
T Consensus 18 vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~ 95 (361)
T 3scy_A 18 VGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ 95 (361)
T ss_dssp EEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe
Confidence 4555443333333443443333322 222 566788999999 67777777775 89999998753 112333444
Q ss_pred cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---c--------CCCCCeE
Q psy4578 664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---D--------AHTAEVN 732 (860)
Q Consensus 664 ~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---~--------~h~~~I~ 732 (860)
..+......+++ ++++++++...++. +.+|++........+... . .+...+.
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSGGS---------------ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTTTE---------------EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCCCE---------------EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 445566778888 78876666656777 889988754322222111 1 1233468
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEeCCCCce------e------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578 733 CLSFNPYSEYILATGSADKTVALWDLRNLKL------K------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800 (860)
Q Consensus 733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~------~------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW 800 (860)
+++|+|+|+++++++..++.|.+|++..... . ......+.....+++|+|+|+++++++..++.|.+|
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 8999999998677777789999998875431 0 112233456688999999999755555478999999
Q ss_pred ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC-CCeEee
Q psy4578 801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-DNIMQK 856 (860)
Q Consensus 801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~-Dg~IrI 856 (860)
++.++.... . ..+.....+.....+++|+|||+++++++.. ++.|.+
T Consensus 239 ~~~~g~~~~-~--------~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 239 RYADGMLDE-I--------QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp EEETTEEEE-E--------EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred EecCCceEE-e--------EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 988532110 0 0111222344557899999999987777776 676665
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=3.1e-13 Score=147.53 Aligned_cols=201 Identities=9% Similarity=0.078 Sum_probs=145.8
Q ss_pred ccceeeeEeeccCCcEEEEEeC-------CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 621 LRLLIDVAWHLLHESLFGSVAD-------DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~-------DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
...+..++|+| +++.+++++. ++.|.+||..+++. ...+.. ...+.+++|+|+|+++++++..++.
T Consensus 40 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~-- 112 (353)
T 3vgz_A 40 GKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEV---TQAIHN-DLKPFGATINNTTQTLWFGNTVNSA-- 112 (353)
T ss_dssp ESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCE---EEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--
T ss_pred ccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---EEEEec-CCCcceEEECCCCCEEEEEecCCCE--
Confidence 35678999999 5555555553 67899999988543 333322 3457889999999987777777777
Q ss_pred eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC---------CeEEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCce
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA---------EVNCLSFNPYSEYILATG-SADKTVALWDLRNLKL 763 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~---------~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~ 763 (860)
|.+||..++ +.+..+..+.. .+.+++|+|+|+++++++ +.++.|.+||..+++.
T Consensus 113 -------------v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 113 -------------VTAIDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp -------------EEEEETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred -------------EEEEeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 999999876 44444444332 278899999999755555 3588999999998876
Q ss_pred eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 843 (860)
Q Consensus 764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~ 843 (860)
...+..+...+.+++|+|+|++ +++++.++.|.+||..+......... ...++...+.+++|+|+|++
T Consensus 177 -~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 177 -KTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKL----------LDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp -EEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEEC----------CCSSSCCCEEEEEEETTTTE
T ss_pred -EEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEc----------CCCCCCcccceEEECCCCCE
Confidence 6666656666889999999986 67778899999999987543322111 01134567889999999998
Q ss_pred EEEEEeCCCeEee
Q psy4578 844 VICSVSEDNIMQK 856 (860)
Q Consensus 844 Llasgs~Dg~IrI 856 (860)
+++++..++.|.+
T Consensus 245 l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 245 AFITDSKAAEVLV 257 (353)
T ss_dssp EEEEESSSSEEEE
T ss_pred EEEEeCCCCEEEE
Confidence 8888777677764
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.54 E-value=2.3e-13 Score=159.56 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=145.5
Q ss_pred EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
.|+| ++.++++++.|++|.+||..++ +.+..+..+.. +.+++|+|+|++ +++++.|++ |
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~-l~v~~~d~~---------------V 202 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRY-LLVIGRDAR---------------I 202 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCE-EEEEETTSE---------------E
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCE-EEEECCCCe---------------E
Confidence 3777 6788999999999999999885 44555553222 889999999996 677777788 9
Q ss_pred EEEeC--CCCCCCCCeeeecCCCCCeEEEEEcC----CCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----------C
Q psy4578 708 MIWDT--RSHNVSKPSHTVDAHTAEVNCLSFNP----YSEYILATGSADKTVALWDLRNLKLKLHSFES----------H 771 (860)
Q Consensus 708 ~iwDl--~~~~~~~~~~~~~~h~~~I~sl~~sp----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----------h 771 (860)
.+||+ .++ +.+..+. +...+.+++|+| +|+++++++..+++|.+||..+.+. +..+.. |
T Consensus 203 ~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 203 DMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp EEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEE
T ss_pred EEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccc
Confidence 99999 554 4455555 456789999999 9997444444689999999998876 555543 2
Q ss_pred -CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 772 -KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 772 -~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
...+.++.++|+++.++++...+|.|.+||+.+..... +... .+...+.+++|+|+|+++++++..
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~------------~~~i-~~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT------------VTSI-GAAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE------------EEEE-ECCSSCCCEEECTTSCEEEEEEGG
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce------------eEEe-ccCcCccCceECCCCCEEEEEecC
Confidence 23789999999998888888899999999998744321 1111 245668889999999998888888
Q ss_pred CCeEee
Q psy4578 851 DNIMQK 856 (860)
Q Consensus 851 Dg~IrI 856 (860)
++.|.+
T Consensus 345 ~~~v~v 350 (543)
T 1nir_A 345 SNKVAV 350 (543)
T ss_dssp GTEEEE
T ss_pred CCeEEE
Confidence 888775
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.52 E-value=1.3e-13 Score=166.65 Aligned_cols=212 Identities=8% Similarity=0.008 Sum_probs=144.1
Q ss_pred EEEeeccchhhhhhhhhccc----ceeeeEeeccCCcEEEEEeCC---------CcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578 603 VMYLENKTRAQICQLLDKLR----LLIDVAWHLLHESLFGSVADD---------QKLMIWDTRSHNVSKPSHTVDAHTAE 669 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~----~V~~v~~sp~~~~~lasgs~D---------G~I~IWd~~~~~~~~~~~~~~~h~~~ 669 (860)
.+++|+...++...+..++. .|.+++|+| +++.+++++.+ +.+.+||+.++.. ..+....+|...
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 115 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAK 115 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccc
Confidence 46677777766655555543 399999999 78888888764 7888999988643 223333445556
Q ss_pred eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCC------------------e
Q psy4578 670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE------------------V 731 (860)
Q Consensus 670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~------------------I 731 (860)
+.+++|+|||+. ++.++. +. |++||+.++. .......+... +
T Consensus 116 ~~~~~~SPdG~~-la~~~~-~~---------------i~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 116 LQYAGWGPKGQQ-LIFIFE-NN---------------IYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp CSBCCBCSSTTC-EEEEET-TE---------------EEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ccccEECCCCCE-EEEEEC-Ce---------------EEEEECCCCc---eEEEecCCCCCceECcccceeEEEEeccCc
Confidence 899999999997 566654 55 9999998763 33333333332 3
Q ss_pred EEEEEcCCCCcEEEEeeCCC----------------------------------cEEEEeCCCCceeeEEeccC------
Q psy4578 732 NCLSFNPYSEYILATGSADK----------------------------------TVALWDLRNLKLKLHSFESH------ 771 (860)
Q Consensus 732 ~sl~~sp~g~~llasgs~Dg----------------------------------~I~IWDl~~~~~~~~~~~~h------ 771 (860)
.+++|+|+|++ |++++.|+ .|++||+.++.. ...+..+
T Consensus 176 ~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 176 IAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMR 253 (723)
T ss_dssp EEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGS
T ss_pred ceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCc
Confidence 78999999996 66665442 799999988764 3444443
Q ss_pred CCceEEEEEcCCCCCEEEEEE----CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCce----EEEEEccCCCe
Q psy4578 772 KDEIFQVQWSPHNETILASSG----TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI----SDFSWNPNEPW 843 (860)
Q Consensus 772 ~~~V~~l~fsp~g~~lL~tgs----~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I----~~i~~spdg~~ 843 (860)
...+.+++|+|||+. +++.+ .++.|++||+.++...... ...+.+.+ ..++|+|||++
T Consensus 254 ~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~d~~~g~~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 254 EYYITMVKWATSTKV-AVTWLNRAQNVSILTLCDATTGVCTKKH-------------EDESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp SEEEEEEEESSSSEE-EEEEEETTSCEEEEEEEETTTCCEEEEE-------------EEECSSCCCCCCCCCEECTTSCS
T ss_pred cceeEEEEEeCCCeE-EEEEEcCCCCeEEEEEEeCCCCcceEEE-------------EeccCCEEeccCCCceEcCCCCe
Confidence 567899999999985 54543 2367999999874432110 01122333 37899999998
Q ss_pred EEEE-EeCCC
Q psy4578 844 VICS-VSEDN 852 (860)
Q Consensus 844 Llas-gs~Dg 852 (860)
+++. +..++
T Consensus 320 l~~~~~~~~~ 329 (723)
T 1xfd_A 320 FFFIRAIPQG 329 (723)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEecccC
Confidence 7765 66676
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.52 E-value=1.4e-13 Score=167.12 Aligned_cols=193 Identities=8% Similarity=0.092 Sum_probs=135.4
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN 702 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~ 702 (860)
.|.+++|+| +++.+++++. +.|.+||+.++.. .....+..|...+.+++|+|||++ ++.++. +.
T Consensus 110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~-la~~~~-~~----------- 173 (741)
T 2ecf_A 110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGF-VSFIRG-RN----------- 173 (741)
T ss_dssp ESCCCEECT-TSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSE-EEEEET-TE-----------
T ss_pred CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCE-EEEEeC-Cc-----------
Confidence 489999999 7888888776 9999999987510 023455677888999999999996 555553 45
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCC----------------eEEEEEcCCCCcEEEEeeCCC---------------
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAE----------------VNCLSFNPYSEYILATGSADK--------------- 751 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~----------------I~sl~~sp~g~~llasgs~Dg--------------- 751 (860)
|++||+.++. .......+... +.+++|+|+|++ |++++.|+
T Consensus 174 ----i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 174 ----LWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp ----EEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSC
T ss_pred ----EEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCc
Confidence 9999988752 22222222221 478999999997 66666554
Q ss_pred ------------------cEEEEeCCC-CceeeEEec--cCCCceEEEEEcCCCCCEEEEEE----CCCcEEEEECCCCC
Q psy4578 752 ------------------TVALWDLRN-LKLKLHSFE--SHKDEIFQVQWSPHNETILASSG----TDRRLHVWDLSKIG 806 (860)
Q Consensus 752 ------------------~I~IWDl~~-~~~~~~~~~--~h~~~V~~l~fsp~g~~lL~tgs----~Dg~I~iWdl~~~~ 806 (860)
.|++||+.+ +.. ..... .|...+.+++| |+|+++++++. .++.|++||+.++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 789999988 764 22222 47788999999 99997554443 35789999998754
Q ss_pred cccccccccCCCCccEEEecCccC----ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 807 EEQSTEDAEDGPPELLFIHGGHTA----KISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 807 ~~~~~~~~~~~~~~~i~~~~~h~~----~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.. .....+.. .+.+++|+|||+ ++++++.|+.++|
T Consensus 324 ~~--------------~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l 362 (741)
T 2ecf_A 324 QR--------------VLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHL 362 (741)
T ss_dssp EE--------------EEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEE
T ss_pred eE--------------EEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEE
Confidence 32 11112221 456889999999 6778888886654
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.52 E-value=1.4e-12 Score=143.77 Aligned_cols=207 Identities=11% Similarity=0.161 Sum_probs=134.3
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-----------cCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-----------DAHTAEVNCLSFNPYSEYILATGSADK 690 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-----------~~h~~~V~~l~~sp~g~~llasgs~Dg 690 (860)
.....+++ ++..++++...++.|.+|++............ ..+...+.+++|+|+|+++++++..++
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 45666666 24444444457899999999753222211111 112334688999999998777766677
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCC------CCC----eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNV------SKP----SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN 760 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~------~~~----~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~ 760 (860)
. |.+|++..... ... ......+.....+++|+|+|+++++++..++.|.+||+.+
T Consensus 178 ~---------------v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 178 Q---------------IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp E---------------EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred E---------------EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 6 99998875431 100 1112334566889999999997555555799999999986
Q ss_pred Ccee-eEEe---ccCCCceEEEEEcCCCCCEEEEEEC-CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578 761 LKLK-LHSF---ESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 835 (860)
Q Consensus 761 ~~~~-~~~~---~~h~~~V~~l~fsp~g~~lL~tgs~-Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i 835 (860)
+... +... ..+.....+++|+|+|++++++... ++.|.+|++..... ....+..... ...+.++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g----------~~~~~~~~~~-g~~~~~~ 311 (361)
T 3scy_A 243 GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG----------TLTKVGYQLT-GIHPRNF 311 (361)
T ss_dssp TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC----------CEEEEEEEEC-SSCCCEE
T ss_pred CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC----------cEEEeeEecC-CCCCceE
Confidence 6431 2222 2334567899999999975555555 68999999963110 1112222322 4567899
Q ss_pred EEccCCCeEEEEEeCCCeEee
Q psy4578 836 SWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 836 ~~spdg~~Llasgs~Dg~IrI 856 (860)
+|+|+|+++++++..++.|.+
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEECCCCCEEE
Confidence 999999988877778888776
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.51 E-value=1.6e-13 Score=148.95 Aligned_cols=196 Identities=11% Similarity=0.185 Sum_probs=130.3
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~ 713 (860)
..++++++.|+.|++|++........+.. ..+...+.+++|+|+|+++++++..++. |.+|++.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~---------------v~~~~~~ 68 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR---------------VLAYRIA 68 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTE---------------EEEEEEC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCe---------------EEEEEec
Confidence 44566668899999999964211222333 3467789999999999975544444477 9999987
Q ss_pred --CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeEEeccCCCceEEEEEcCCCCCEEE
Q psy4578 714 --SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILA 789 (860)
Q Consensus 714 --~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~~l~fsp~g~~lL~ 789 (860)
++. ...+..+..+. .+.+++|+|+|+++++++..++.|.+||+..+. ....... ....+.+++|+|+|+++++
T Consensus 69 ~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 145 (343)
T 1ri6_A 69 PDDGA-LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWV 145 (343)
T ss_dssp TTTCC-EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEE
T ss_pred CCCCc-eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEE
Confidence 332 12333444333 789999999999756666668999999995322 1133333 3446889999999987554
Q ss_pred EEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++..++.|.+||+.+........ ...........+.+++|+|+|+++++++..++.+++
T Consensus 146 ~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~ 204 (343)
T 1ri6_A 146 PALKQDRICLFTVSDDGHLVAQD--------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV 204 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEE--------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ecCCCCEEEEEEecCCCceeeec--------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 44489999999998622111000 001111223578899999999988888878887765
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.49 E-value=1.2e-12 Score=141.63 Aligned_cols=217 Identities=9% Similarity=0.039 Sum_probs=136.8
Q ss_pred EEeeccchhhhhhhhhccc---ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CC----CCCeeEEEE
Q psy4578 604 MYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AH----TAEVNCLSF 675 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~---~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h----~~~V~~l~~ 675 (860)
+++++....+....+.... .+.+++|+|++..++++++.++.|.+||+.+++. ...+. ++ ...+.+++|
T Consensus 13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---LGRIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---EEEEECCBTTEEEECTTCEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---EeeEEcCCcccccccccceEE
Confidence 4455555555554444444 5889999995445667777789999999987543 33222 11 226788999
Q ss_pred ccCCCeEEEEEeCCCceeeeccccccc--CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcE
Q psy4578 676 NPYSEYILATGSADKTQFEVEEEEEEN--YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV 753 (860)
Q Consensus 676 sp~g~~llasgs~Dg~i~~~~~~~~~~--~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I 753 (860)
+|+|++++++....+. ..... .++.|.+||+.++ +....+.. ...+.+++|+|+|++ ++++ ++.|
T Consensus 90 s~dg~~l~~~~~~~~~------~~~~~~~~~~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~-l~~~--~~~i 156 (337)
T 1pby_B 90 SPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSK-LYGL--GRDL 156 (337)
T ss_dssp CTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSC-EEEE--SSSE
T ss_pred CCCCCEEEEEeccccc------ccccccccCceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCE-EEEe--CCeE
Confidence 9999975444321000 00000 1234999999775 33334433 456788899999997 4444 6789
Q ss_pred EEEeCCCCceeeEEec----------------------------------------------------------------
Q psy4578 754 ALWDLRNLKLKLHSFE---------------------------------------------------------------- 769 (860)
Q Consensus 754 ~IWDl~~~~~~~~~~~---------------------------------------------------------------- 769 (860)
.+||+.++.. ...+.
T Consensus 157 ~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 157 HVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcE-eeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 9999887654 22221
Q ss_pred --cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578 770 --SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847 (860)
Q Consensus 770 --~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas 847 (860)
.+...+.+++|+|+|++ ++++ ++.|.+||+.+.+.. .... ....+.+++|+|+|+++++
T Consensus 236 ~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~s~dg~~l~~- 296 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASI--------------KRVP-LPHSYYSVNVSTDGSTVWL- 296 (337)
T ss_dssp EEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEE--------------EEEE-CSSCCCEEEECTTSCEEEE-
T ss_pred cCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCc--------------ceec-CCCceeeEEECCCCCEEEE-
Confidence 11223556899999986 5555 789999998874322 2222 2245788999999997665
Q ss_pred EeCCCeEee
Q psy4578 848 VSEDNIMQK 856 (860)
Q Consensus 848 gs~Dg~IrI 856 (860)
++.++.|++
T Consensus 297 ~~~~~~i~v 305 (337)
T 1pby_B 297 GGALGDLAA 305 (337)
T ss_dssp ESBSSEEEE
T ss_pred EcCCCcEEE
Confidence 466777765
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.48 E-value=5.9e-13 Score=161.58 Aligned_cols=227 Identities=10% Similarity=0.029 Sum_probs=150.6
Q ss_pred EEEEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC---------
Q psy4578 602 EVMYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE--------- 669 (860)
Q Consensus 602 ~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~--------- 669 (860)
..+++|+.... ....+..+...+.+++|+| +++.+++++ ++.|.+||+.++.. ......+...
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~---~~~~~~~~~~~~~g~~~~v 203 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQ---MQLTADGSTTIGNGIAEFV 203 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEE---EECCCCCCSSEEESCCCHH
T ss_pred CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCE---EEeccCCccceecccccee
Confidence 34666776666 6666777778899999999 778888777 46999999987432 2222222221
Q ss_pred -------eeEEEEccCCCeEEEEEeCCC-ceeeec---------------ccccc--cCCCcEEEEeCCC-CCCCCCeee
Q psy4578 670 -------VNCLSFNPYSEYILATGSADK-TQFEVE---------------EEEEE--NYDQKLMIWDTRS-HNVSKPSHT 723 (860)
Q Consensus 670 -------V~~l~~sp~g~~llasgs~Dg-~i~~~~---------------~~~~~--~~dg~I~iwDl~~-~~~~~~~~~ 723 (860)
+.+++|+|||+++ ++++.|+ .+..+. ....+ .....|.+||+.+ ++. ..+..
T Consensus 204 ~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~ 281 (741)
T 2ecf_A 204 ADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDL 281 (741)
T ss_dssp HHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECC
T ss_pred eeeccccccceEECCCCCEE-EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecC
Confidence 4789999999974 4444433 221111 00001 1122588889887 632 11111
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEee----CCCcEEEEeCCCCceeeEEeccCCC----ceEEEEEcCCCCCEEEEEECCC
Q psy4578 724 VDAHTAEVNCLSFNPYSEYILATGS----ADKTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDR 795 (860)
Q Consensus 724 ~~~h~~~I~sl~~sp~g~~llasgs----~Dg~I~IWDl~~~~~~~~~~~~h~~----~V~~l~fsp~g~~lL~tgs~Dg 795 (860)
...|...+.+++| |+|+++++++. .++.|++||+.++.. ...+..+.. .+.+++|+|+|+ ++++++.||
T Consensus 282 ~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g 358 (741)
T 2ecf_A 282 GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG 358 (741)
T ss_dssp CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS
T ss_pred CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC
Confidence 1147788999999 99997444433 357899999998876 444444432 456899999998 688999999
Q ss_pred cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE-EEccCCCeEEEEEeCCC
Q psy4578 796 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF-SWNPNEPWVICSVSEDN 852 (860)
Q Consensus 796 ~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i-~~spdg~~Llasgs~Dg 852 (860)
.+++|.+.... . ...+..|...|.++ .|+|+|+.++++++.++
T Consensus 359 ~~~l~~~~~~~-------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 359 FQHLYRIDSKG-------------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp SCEEEEECSSS-------------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred ccEEEEEcCCC-------------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 88888876311 1 34455667778887 59999998888888776
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.48 E-value=1.9e-13 Score=165.33 Aligned_cols=202 Identities=10% Similarity=0.153 Sum_probs=135.2
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---CeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
..+.+++|+| ++.++++ +.||+|++||+.+++ ....+..|.. .|.+++|+|||++ +++++.++.++
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~-l~~~~~~~~~~----- 85 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREY-ALFSYNVEPIY----- 85 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSE-EEEEESCCCCS-----
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCE-EEEEecCccce-----
Confidence 3578999999 5666665 789999999998853 3444555554 4999999999997 66666654311
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc----
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE---- 774 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~---- 774 (860)
....++.+.+||+.+++. ..+....+|...+.+++|||+|+. ++.++. +.|++||+.++.. ......+...
T Consensus 86 -~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~-la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 86 -QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ-LIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYN 160 (723)
T ss_dssp -SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC-EEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEE
T ss_pred -eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE-EEEEEC-CeEEEEECCCCce-EEEecCCCCCceEC
Confidence 112346699999998743 223333445556899999999996 767665 7999999998765 3333333332
Q ss_pred --------------eEEEEEcCCCCCEEEEEECCC----------------------------------cEEEEECCCCC
Q psy4578 775 --------------IFQVQWSPHNETILASSGTDR----------------------------------RLHVWDLSKIG 806 (860)
Q Consensus 775 --------------V~~l~fsp~g~~lL~tgs~Dg----------------------------------~I~iWdl~~~~ 806 (860)
+.+++|+|||+. |++++.|+ .|++||+.+..
T Consensus 161 g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred cccceeEEEEeccCcceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 378999999997 55665432 67888877644
Q ss_pred cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg 848 (860)
....+... .....+...+.+++|+|||++++++.
T Consensus 240 ~~~~l~~~--------~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 240 HDLEMMPP--------DDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp CCEECCCC--------CCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred eeEEeeCC--------ccCCCccceeEEEEEeCCCeEEEEEE
Confidence 21111100 00112356789999999999654443
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.48 E-value=3.1e-13 Score=163.18 Aligned_cols=230 Identities=11% Similarity=0.083 Sum_probs=151.8
Q ss_pred EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-----CCcccCeeeccCCCC--------
Q psy4578 602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-----HNVSKPSHTVDAHTA-------- 668 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-----~~~~~~~~~~~~h~~-------- 668 (860)
..+++|+....+...+..+...+.+++|+| +++.++++ .|+.|.+||+.+ ++.. .....+..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAI---AVTIDGTETLVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCE---ESCSCCBTTEEESSCC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcE---EeccCCCCCeEcccch
Confidence 356677776666666666677899999999 67777775 679999999987 5331 21222222
Q ss_pred ------CeeEEEEccCCCeEEEEEeCCCceeeeccc-----------------ccccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578 669 ------EVNCLSFNPYSEYILATGSADKTQFEVEEE-----------------EEENYDQKLMIWDTRSHNVSKPSHTVD 725 (860)
Q Consensus 669 ------~V~~l~~sp~g~~llasgs~Dg~i~~~~~~-----------------~~~~~dg~I~iwDl~~~~~~~~~~~~~ 725 (860)
.+.++.|+|||++++.++..+..+..+... .....++.|.+||+.++.. ..+....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence 258999999999744444232222111111 0112346799999987632 1111122
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeeCCC-----cEEEEeCCCCceeeEEec-cCCC---ceEEEEEcC--CCCCEEEEEECC
Q psy4578 726 AHTAEVNCLSFNPYSEYILATGSADK-----TVALWDLRNLKLKLHSFE-SHKD---EIFQVQWSP--HNETILASSGTD 794 (860)
Q Consensus 726 ~h~~~I~sl~~sp~g~~llasgs~Dg-----~I~IWDl~~~~~~~~~~~-~h~~---~V~~l~fsp--~g~~lL~tgs~D 794 (860)
.|...+.+++|+|+|++ +++++.++ .|++||+.++........ .+.. .+.+++|+| +|+ ++++++.|
T Consensus 255 ~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~ 332 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRD 332 (706)
T ss_dssp CTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTT
T ss_pred CCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccC
Confidence 56778999999999996 66666564 899999998833122221 2222 246789999 998 58888899
Q ss_pred CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE-EEEccCCCeEEEEEeCCC
Q psy4578 795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~-i~~spdg~~Llasgs~Dg 852 (860)
|.+++|++... ...+..+..|...+.+ ++|+|+|+.++++++.++
T Consensus 333 g~~~l~~~~~~-------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 333 GWNHLYLYDTT-------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SSCEEEEEETT-------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CccEEEEEECC-------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 99999987631 1223444566677876 799999998888887775
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.47 E-value=1.8e-12 Score=140.95 Aligned_cols=222 Identities=8% Similarity=-0.005 Sum_probs=139.3
Q ss_pred EEEeeccchhhhhhhhhccc--ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC------CCCeeEEE
Q psy4578 603 VMYLENKTRAQICQLLDKLR--LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLS 674 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~--~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h------~~~V~~l~ 674 (860)
.+++|+....+....+.... .+..++|+|++..+++++..++.|.+||+.+++ ....+... ...+.+++
T Consensus 22 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~~~~~~~~~ 98 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHANLSSVPGEVGRSMYSFA 98 (349)
T ss_dssp EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEESCCSTTEEEECSSCEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---EEEEEEcccccccccccccceE
Confidence 35556655555554444444 688999999544456677788999999998753 23333222 22378899
Q ss_pred EccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578 675 FNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754 (860)
Q Consensus 675 ~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~ 754 (860)
|+|+|++ +++++.+... ........++.|.+||+.++.....+.... +...+.+++|+|+|+ +++ ++ +.|.
T Consensus 99 ~spdg~~-l~~~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~ 169 (349)
T 1jmx_B 99 ISPDGKE-VYATVNPTQR---LNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIY 169 (349)
T ss_dssp ECTTSSE-EEEEEEEEEE---CSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEE
T ss_pred ECCCCCE-EEEEcccccc---cccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEE
Confidence 9999997 4444433000 000000112349999998754334344444 344688999999998 565 33 3499
Q ss_pred EEeCCCCceeeEEeccCC--------------------------------------------------------------
Q psy4578 755 LWDLRNLKLKLHSFESHK-------------------------------------------------------------- 772 (860)
Q Consensus 755 IWDl~~~~~~~~~~~~h~-------------------------------------------------------------- 772 (860)
+||..+++. ...+..+.
T Consensus 170 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 170 KMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 999988765 33332221
Q ss_pred ------CceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578 773 ------DEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 845 (860)
Q Consensus 773 ------~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll 845 (860)
..+.+++|+| +|+. ++++ ++.|.+||+.+.+.. .... ....+.+++|+|+|++++
T Consensus 249 ~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~s~dg~~l~ 310 (349)
T 1jmx_B 249 EFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQRKLI--------------KAAN-LDHTYYCVAFDKKGDKLY 310 (349)
T ss_dssp EEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTTTEEE--------------EEEE-CSSCCCEEEECSSSSCEE
T ss_pred ccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECccCeEE--------------EEEc-CCCCccceEECCCCCEEE
Confidence 1355678889 9986 5555 889999999874322 2221 223467899999999766
Q ss_pred EEEeCCCeEee
Q psy4578 846 CSVSEDNIMQK 856 (860)
Q Consensus 846 asgs~Dg~IrI 856 (860)
+ ++.++.|++
T Consensus 311 ~-~~~~~~v~v 320 (349)
T 1jmx_B 311 L-GGTFNDLAV 320 (349)
T ss_dssp E-ESBSSEEEE
T ss_pred E-ecCCCeEEE
Confidence 5 566777765
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.46 E-value=3.5e-13 Score=159.08 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=141.9
Q ss_pred eccchhhhhhhhhcc-cceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 607 ENKTRAQICQLLDKL-RLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 607 ~n~~~~~l~~l~~~~-~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
|....+...++..+. ..+.+++|+| + .++++++. +...++|.+......... .+... ..+...+|+|+|+.+
T Consensus 49 w~~~~g~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 49 YLYDGGETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAV 124 (582)
T ss_dssp EEEETTEEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCE
T ss_pred EEEcCCCcEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeE
Confidence 334556666666666 5899999998 4 77777765 556677766541001112 22222 234577899998765
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeC
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDL 758 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl 758 (860)
+++.+.++. +.+||+.+++ . ..+..+.. .+++|+|+|+. +++++.+ +.|++||+
T Consensus 125 ~~~s~~~~~---------------~~l~d~~~g~---~-~~l~~~~~--~~~~~spDG~~-la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 125 VFTGATEDR---------------VALYALDGGG---L-RELARLPG--FGFVSDIRGDL-IAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp EEEEECSSC---------------EEEEEEETTE---E-EEEEEESS--CEEEEEEETTE-EEEEEEEETTEEEEEEEET
T ss_pred EEEecCCCC---------------ceEEEccCCc---E-EEeecCCC--ceEEECCCCCE-EEEEEEcCCCCeEEEEEcC
Confidence 555444444 5699998762 2 22222333 78999999996 7766666 77999999
Q ss_pred CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 836 (860)
Q Consensus 759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~ 836 (860)
.++.. ..+..|...+.+++|+|||+. |++++.+| .|++||+.++... ...+|...+.+++
T Consensus 183 ~~g~~--~~l~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 183 SSGGL--RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVE---------------DLELPSKDFSSYR 244 (582)
T ss_dssp TTCCC--EEECCSSCEEEEEEECTTSCE-EEEEECSSCEEEEEECTTTCCEE---------------ECCCSCSHHHHHC
T ss_pred CCCCc--eEeecCCCccccceECCCCCE-EEEccCCCeeEEEEEcCCCCcEE---------------EccCCCcChhhhh
Confidence 88774 467788899999999999996 66888888 8999999874332 3345555555566
Q ss_pred --------EccCCCeEEEEEeCCCeEee
Q psy4578 837 --------WNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 837 --------~spdg~~Llasgs~Dg~IrI 856 (860)
|+||| .++++++.|+.+++
T Consensus 245 ~~~~~~~~~spdg-~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 245 PTAITWLGYLPDG-RLAVVARREGRSAV 271 (582)
T ss_dssp CSEEEEEEECTTS-CEEEEEEETTEEEE
T ss_pred hccccceeEcCCC-cEEEEEEcCCcEEE
Confidence 99999 58889999998876
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.44 E-value=2.1e-12 Score=163.30 Aligned_cols=183 Identities=12% Similarity=0.100 Sum_probs=141.5
Q ss_pred cceeeeEee-ccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-CeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 622 RLLIDVAWH-LLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-EVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 622 ~~V~~v~~s-p~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
..+.+++|+ | ++..+++++ ++.|.+|+..++. ...+..|.. .+.+++|+ +|+. ++.++.++.
T Consensus 296 ~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~-------- 359 (1045)
T 1k32_A 296 PSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGD-TKVA-FIHGTREGD-------- 359 (1045)
T ss_dssp GGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSB----EEECSCCSCEEEEEECSS-SEEE-EEEEETTEE--------
T ss_pred cccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCc----eEEccCCCcceEEeeeEc-CCCe-EEEEECCCc--------
Confidence 468999999 8 677777766 7899999987642 234556777 89999999 8886 566665555
Q ss_pred cccCCCcEE-EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578 700 EENYDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778 (860)
Q Consensus 700 ~~~~dg~I~-iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l 778 (860)
+. +||+.++. ...+.+|...+.+++|+|+|++ +++++.++.|++||+.++.. .....+|...+.++
T Consensus 360 -------l~~~~d~~~~~----~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 360 -------FLGIYDYRTGK----AEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKP-TVIERSREAMITDF 426 (1045)
T ss_dssp -------EEEEEETTTCC----EEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCE
T ss_pred -------eEEEEECCCCC----ceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCce-EEeccCCCCCccce
Confidence 77 88887642 2334478889999999999995 88999999999999998876 55566788999999
Q ss_pred EEcCCCCCEEEEEECC----------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578 779 QWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~D----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg 848 (860)
+|+|+|++ |++++.+ +.|++||+.++. ...+..|...+.+++|+|||+++++++
T Consensus 427 ~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------------~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 427 TISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK---------------IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE---------------EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred EECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc---------------EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 99999997 5555543 489999998632 344556777889999999999766444
Q ss_pred e
Q psy4578 849 S 849 (860)
Q Consensus 849 s 849 (860)
.
T Consensus 491 ~ 491 (1045)
T 1k32_A 491 Y 491 (1045)
T ss_dssp S
T ss_pred c
Confidence 3
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.42 E-value=3e-12 Score=154.46 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=133.6
Q ss_pred eeeeEeeccCCcEEEEEe---------------------------------CCCcEEEEEcCCCCcccCeeeccCCCCCe
Q psy4578 624 LIDVAWHLLHESLFGSVA---------------------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEV 670 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs---------------------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V 670 (860)
+.+++|+| +++.|++++ .++.|.+||+.++... .+.....|...+
T Consensus 183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~ 260 (706)
T 2z3z_A 183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFL 260 (706)
T ss_dssp CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEE
T ss_pred CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeE
Confidence 58999999 777788776 4468999999875321 111122566789
Q ss_pred eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC---CeEEEEEcC--CCCcEEE
Q psy4578 671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNP--YSEYILA 745 (860)
Q Consensus 671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~---~I~sl~~sp--~g~~lla 745 (860)
.+++|+|+|+. +++++.++. .....|.+||+.++.....+.. ..+.. .+.+++|+| +|+ +++
T Consensus 261 ~~~~~spdg~~-l~~~~~~~~----------~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~-~l~ 327 (706)
T 2z3z_A 261 TNLSWSPDENI-LYVAEVNRA----------QNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNNQ-FIW 327 (706)
T ss_dssp EEEEECTTSSE-EEEEEECTT----------SCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEECTTCSSE-EEE
T ss_pred eeEEEECCCCE-EEEEEeCCC----------CCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceeecCCCCE-EEE
Confidence 99999999997 555544431 0123499999987621111111 12222 246789999 998 588
Q ss_pred EeeCCCcEEEEeCC-CCceeeEEeccCCCceEE-EEEcCCCCCEEEEEECCC----cEEEEECCCCCcccccccccCCCC
Q psy4578 746 TGSADKTVALWDLR-NLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDR----RLHVWDLSKIGEEQSTEDAEDGPP 819 (860)
Q Consensus 746 sgs~Dg~I~IWDl~-~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tgs~Dg----~I~iWdl~~~~~~~~~~~~~~~~~ 819 (860)
+++.||.++||+++ ++.. ...+..|...+.+ ++|+|+|+.++++++.++ .|..||+.++..
T Consensus 328 ~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~------------ 394 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRL-IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT------------ 394 (706)
T ss_dssp EECTTSSCEEEEEETTSCE-EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC------------
T ss_pred EEccCCccEEEEEECCCCE-EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc------------
Confidence 88999999999886 3443 6667777777877 799999998666666665 666667655221
Q ss_pred ccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D 851 (860)
..+ .|...+.+++|+|||++++++++.+
T Consensus 395 ---~~l-~~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 395 ---KDL-TPESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp ---EES-CCSSSEEEEEECTTSSEEEEEEECS
T ss_pred ---eec-cCCCceEEEEECCCCCEEEEEecCC
Confidence 111 2456789999999999877776655
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.42 E-value=5.1e-12 Score=140.10 Aligned_cols=206 Identities=13% Similarity=0.163 Sum_probs=128.9
Q ss_pred ceeeeEeeccCCc--EEEEEe-------------CCCcEEEEEcCC-CCcccCeeecc-CCCCCeeEEEEccCCCeEEEE
Q psy4578 623 LLIDVAWHLLHES--LFGSVA-------------DDQKLMIWDTRS-HNVSKPSHTVD-AHTAEVNCLSFNPYSEYILAT 685 (860)
Q Consensus 623 ~V~~v~~sp~~~~--~lasgs-------------~DG~I~IWd~~~-~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llas 685 (860)
.+.+++|+| +++ ++++++ .+|.+.+|++.. +.....+..+. .+...+.+++|+|+|++++++
T Consensus 84 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 84 HPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 466799998 555 344543 689999999974 32211122111 245679999999999975544
Q ss_pred EeCCCceeeecccccccCCCcEEEEeCC-CCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--C
Q psy4578 686 GSADKTQFEVEEEEEENYDQKLMIWDTR-SHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--N 760 (860)
Q Consensus 686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~-~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~ 760 (860)
...++. |.+||+. +++. ..+..+. .|...+..++|+|+|+++++++..++.|.+|++. +
T Consensus 163 ~~~~~~---------------v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 163 DLTANK---------------LWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp ETTTTE---------------EEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cCCCCE---------------EEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 434555 9999997 5421 1222332 2456789999999999755555567899999875 3
Q ss_pred Cceee--EEec-------cCCC------ceEEEE-EcCCCCCEEEEEECCC-----cEEEEECCCCCcccccccccCCCC
Q psy4578 761 LKLKL--HSFE-------SHKD------EIFQVQ-WSPHNETILASSGTDR-----RLHVWDLSKIGEEQSTEDAEDGPP 819 (860)
Q Consensus 761 ~~~~~--~~~~-------~h~~------~V~~l~-fsp~g~~lL~tgs~Dg-----~I~iWdl~~~~~~~~~~~~~~~~~ 819 (860)
+.... .... +|.. .+.+++ |+|+|++++++...++ +|.+|++......
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----------- 295 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI----------- 295 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----------
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----------
Confidence 43211 1121 1222 588999 9999997544443333 8999998631111
Q ss_pred ccEE-EecCccCceEEEEEcc---CCCeEEEEEeCCCeEee
Q psy4578 820 ELLF-IHGGHTAKISDFSWNP---NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 820 ~~i~-~~~~h~~~I~~i~~sp---dg~~Llasgs~Dg~IrI 856 (860)
..+. ....+...+..++|+| +|+++++++.+++.|++
T Consensus 296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 1111 1222344567789999 89987766666677765
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.38 E-value=8.1e-13 Score=159.95 Aligned_cols=217 Identities=12% Similarity=0.108 Sum_probs=139.2
Q ss_pred EEEeeccchhhhhhhhhcccc----eeeeEeeccCCcEEEEEeC---------CCcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578 603 VMYLENKTRAQICQLLDKLRL----LIDVAWHLLHESLFGSVAD---------DQKLMIWDTRSHNVSKPSHTVDAHTAE 669 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~----V~~v~~sp~~~~~lasgs~---------DG~I~IWd~~~~~~~~~~~~~~~h~~~ 669 (860)
.+++|+...++...+..++.. +.+++|+| +++.+++++. ++.|++||+.+++.... ..+ ...
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~ 111 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRP 111 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSS
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eec---Ccc
Confidence 356677666666666655433 99999999 7777777765 78999999987532100 111 256
Q ss_pred eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCC-----------------eE
Q psy4578 670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE-----------------VN 732 (860)
Q Consensus 670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~-----------------I~ 732 (860)
+.+++|+|||+. ++.+. ++. |++||+.++.... .+..++... ..
T Consensus 112 ~~~~~~SPDG~~-la~~~-~~~---------------i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 112 IQYLCWSPVGSK-LAYVY-QNN---------------IYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp BCCEEECSSTTC-EEEEE-TTE---------------EEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred cccceECCCCCE-EEEEE-CCe---------------EEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcc
Confidence 889999999997 55554 556 9999987763211 111222221 25
Q ss_pred EEEEcCCCCcEEEEeeCCC----------------------------------cEEEEeCCCCcee----e---EEeccC
Q psy4578 733 CLSFNPYSEYILATGSADK----------------------------------TVALWDLRNLKLK----L---HSFESH 771 (860)
Q Consensus 733 sl~~sp~g~~llasgs~Dg----------------------------------~I~IWDl~~~~~~----~---~~~~~h 771 (860)
+++|+|||++ |++++.|. .|++||+.++... + ..+.+|
T Consensus 173 ~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 173 ALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred cEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 8999999996 66666442 7889999887631 1 123457
Q ss_pred CCceEEEEEcCCCCCEEEEEECC----CcEEEEE----CCCCCcccccccccCCCCccEEEecCccCceE-----EEEEc
Q psy4578 772 KDEIFQVQWSPHNETILASSGTD----RRLHVWD----LSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-----DFSWN 838 (860)
Q Consensus 772 ~~~V~~l~fsp~g~~lL~tgs~D----g~I~iWd----l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~-----~i~~s 838 (860)
...+.+++|+||++ ++++.... ..|.+|| ..++....... ....+|.+.+. .++|+
T Consensus 252 ~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 252 DYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE----------HIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp CEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE----------EEEECSSSCSSSSSCCCCEEC
T ss_pred cceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe----------cccccCCceEccccCCccEEC
Confidence 88899999999976 56664422 2488889 66543321110 00124455555 78999
Q ss_pred cCCCeEEE-EEeCCCeEe
Q psy4578 839 PNEPWVIC-SVSEDNIMQ 855 (860)
Q Consensus 839 pdg~~Lla-sgs~Dg~Ir 855 (860)
|||+.+++ ++..+|..+
T Consensus 321 pdg~~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKH 338 (719)
T ss_dssp TTSSCEEEEEECTTSCEE
T ss_pred CCCCeEEEEEEccCCceE
Confidence 99997655 455565443
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.37 E-value=1.3e-11 Score=145.46 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=128.0
Q ss_pred ccceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
..+|.+++|+| +++.+|+++. ||+++||++.++ . ...+..|. ..+.+++|+|+ .++++++.++.
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g---~-~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g------- 86 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG---E-TVKLNREPINSVLDPHYGVG--RVILVRDVSKG------- 86 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT---E-EEECCSSCCSEECEECTTCS--EEEEEEECSTT-------
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCC---C-cEeeecccccccccccCCCC--eEEEEeccCCC-------
Confidence 35799999999 7777777766 999999998653 2 23444455 68999999998 46777765221
Q ss_pred ccccCCCcEEEEeCCC--CCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578 699 EEENYDQKLMIWDTRS--HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 776 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~--~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 776 (860)
+...++|.+.. .. ... .+.. ...+...+|+|+|+.++++++.++.+.+||+.++.. .. +..+.. .
T Consensus 87 -----~~~~~l~~~~~~~~g--~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~-l~~~~~--~ 153 (582)
T 3o4h_A 87 -----AEQHALFKVNTSRPG--EEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RE-LARLPG--F 153 (582)
T ss_dssp -----SCCEEEEEEETTSTT--CCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EE-EEEESS--C
T ss_pred -----CcceEEEEEeccCCC--ccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EE-eecCCC--c
Confidence 11255655443 21 111 2222 223456789999876555555556666999988764 22 322333 7
Q ss_pred EEEEcCCCCCEEEEEECC----CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 777 QVQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~D----g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
+++|+|||+. +++++.| +.|++||+.++.. ..+.+|.+.+.+++|||||++++ +++.++
T Consensus 154 ~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~---------------~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~ 216 (582)
T 3o4h_A 154 GFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGL---------------RVFDSGEGSFSSASISPGMKVTA-GLETAR 216 (582)
T ss_dssp EEEEEEETTE-EEEEEEEETTEEEEEEEETTTCCC---------------EEECCSSCEEEEEEECTTSCEEE-EEECSS
T ss_pred eEEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCc---------------eEeecCCCccccceECCCCCEEE-EccCCC
Confidence 8999999996 6666656 7899999887432 23456778899999999999755 777777
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.36 E-value=1.8e-11 Score=132.12 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=107.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCC-CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTA-EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT 712 (860)
Q Consensus 635 ~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~-~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl 712 (860)
.++++++.++.|.+||..+++ ....+.. +.. .+.+++|+|+|++++++++.++. |.+||+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~---------------v~~~d~ 63 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES---------------LVKIDL 63 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTE---------------EEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCc---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCe---------------EEEEEC
Confidence 478999999999999998753 3333332 211 47899999999987788777777 999999
Q ss_pred CCCCCCCCeeeecC-C----CCCeEEEEEcCCCCcEEEEee------------CCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578 713 RSHNVSKPSHTVDA-H----TAEVNCLSFNPYSEYILATGS------------ADKTVALWDLRNLKLKLHSFESHKDEI 775 (860)
Q Consensus 713 ~~~~~~~~~~~~~~-h----~~~I~sl~~sp~g~~llasgs------------~Dg~I~IWDl~~~~~~~~~~~~h~~~V 775 (860)
.++ +.+..+.. + ...+.+++|+|+|++ +++++ .++.|.+||+.++.. ...+.. ...+
T Consensus 64 ~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~ 137 (337)
T 1pby_B 64 VTG---ETLGRIDLSTPEERVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQI 137 (337)
T ss_dssp TTC---CEEEEEECCBTTEEEECTTCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSC
T ss_pred CCC---CeEeeEEcCCcccccccccceEECCCCCE-EEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCc
Confidence 876 33333331 1 125778999999986 55554 579999999988775 444543 4567
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 808 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~ 808 (860)
.+++|+|+|++ ++++ ++.|.+||+.++...
T Consensus 138 ~~~~~s~dg~~-l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 138 TMLAWARDGSK-LYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp CCEEECTTSSC-EEEE--SSSEEEEETTTTEEE
T ss_pred ceeEECCCCCE-EEEe--CCeEEEEECCCCcEe
Confidence 88999999997 4455 689999999876543
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.35 E-value=1.2e-11 Score=156.41 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=138.7
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-----------CCCCeeEEEEc-cCCCeEEEEEeC
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-----------HTAEVNCLSFN-PYSEYILATGSA 688 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-----------h~~~V~~l~~s-p~g~~llasgs~ 688 (860)
+..+...+|+| ++..++++ .++.|.+|+.... .+..+.+ |...+.+++|+ |+|+. +++++
T Consensus 244 ~~~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~- 315 (1045)
T 1k32_A 244 FTDYYPRHLNT-DGRRILFS-KGGSIYIFNPDTE----KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS- 315 (1045)
T ss_dssp CCSSCEEEEEE-SSSCEEEE-ETTEEEEECTTTC----CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-
T ss_pred CCCcceeeEcC-CCCEEEEE-eCCEEEEecCCce----EeeeeccCcccccccccccccccceeeecCCCCCE-EEEEE-
Confidence 34577889998 66666666 4899999998432 2233333 34479999999 99997 55555
Q ss_pred CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC-CeEEEEEcCCCCcEEEEeeCCCcEE-EEeCCCCceeeE
Q psy4578 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA-EVNCLSFNPYSEYILATGSADKTVA-LWDLRNLKLKLH 766 (860)
Q Consensus 689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~-~I~sl~~sp~g~~llasgs~Dg~I~-IWDl~~~~~~~~ 766 (860)
++. +.+|+...+ ....+..|.. .+.+++|+ +|.. +++++.++.+. +||..++.. .
T Consensus 316 ~~~---------------i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~~~~--~ 372 (1045)
T 1k32_A 316 RGQ---------------AFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVA-FIHGTREGDFLGIYDYRTGKA--E 372 (1045)
T ss_dssp TTE---------------EEEECTTSS----BEEECSCCSCEEEEEECSS-SEEE-EEEEETTEEEEEEEETTTCCE--E
T ss_pred cCE---------------EEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCe-EEEEECCCceEEEEECCCCCc--e
Confidence 566 899998764 2334566777 89999999 9986 77777788888 999987764 3
Q ss_pred EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846 (860)
Q Consensus 767 ~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla 846 (860)
.+.+|...+.+++|+|+|++ |++++.++.|++||+.++. ......+|.+.+.+++|+|||+++++
T Consensus 373 ~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~--------------~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 373 KFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp ECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred EecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCc--------------eEEeccCCCCCccceEECCCCCeEEE
Confidence 44478889999999999986 7899999999999998743 23334468888999999999998765
Q ss_pred EEeC
Q psy4578 847 SVSE 850 (860)
Q Consensus 847 sgs~ 850 (860)
++.+
T Consensus 438 ~~~~ 441 (1045)
T 1k32_A 438 GFPL 441 (1045)
T ss_dssp EEEE
T ss_pred EecC
Confidence 5543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.33 E-value=5.2e-12 Score=152.85 Aligned_cols=199 Identities=14% Similarity=0.206 Sum_probs=123.9
Q ss_pred eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---CeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
.+++|+| ++.+++ ++.||.|++||+.+++. ...+.+|.. .+.+++|||||++ ++.++..+.. |+ -
T Consensus 19 ~~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~--~~----~ 86 (719)
T 1z68_A 19 FFPNWIS-GQEYLH-QSADNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKL--WR----Y 86 (719)
T ss_dssp CCCEESS-SSEEEE-ECTTSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEEC--SS----S
T ss_pred CccEECC-CCeEEE-EcCCCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCe-EEEEecCcee--EE----e
Confidence 4889998 555554 45799999999988543 333333322 4899999999997 5555431100 00 0
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce------
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI------ 775 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V------ 775 (860)
..++.|++||+.+++.... ..+ ...+.+++|||+|+. |+.++ ++.|++||+.++........++...+
T Consensus 87 s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp CEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred ecceEEEEEECCCCccccc-eec---CcccccceECCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 1123499999988632100 111 356889999999997 66664 78999999988765211122333222
Q ss_pred -----------EEEEEcCCCCCEEEEEECCC----------------------------------cEEEEECCCCCcccc
Q psy4578 776 -----------FQVQWSPHNETILASSGTDR----------------------------------RLHVWDLSKIGEEQS 810 (860)
Q Consensus 776 -----------~~l~fsp~g~~lL~tgs~Dg----------------------------------~I~iWdl~~~~~~~~ 810 (860)
.+++|+|||++ |++++.|. .|++||+.++.....
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred ceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 48999999997 66665442 788888876432100
Q ss_pred cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
... ..-..+.+|...+.+++|+||++ ++++..
T Consensus 240 ~~~------~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~ 271 (719)
T 1z68_A 240 QEV------PVPAMIASSDYYFSWLTWVTDER-VCLQWL 271 (719)
T ss_dssp EEC------CCCHHHHTSCEEEEEEEESSSSE-EEEEEE
T ss_pred eEc------cCCccCCCCcceEEEeEEeCCCe-EEEEEe
Confidence 000 00011235778899999999976 555533
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.32 E-value=5.2e-11 Score=131.91 Aligned_cols=216 Identities=7% Similarity=0.058 Sum_probs=127.4
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcC-CCCcccCeeeccCCCCCeeEEEEccCCCeE-EEEEeCCCceeeecccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTR-SHNVSKPSHTVDAHTAEVNCLSFNPYSEYI-LATGSADKTQFEVEEEE 699 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~-~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-lasgs~Dg~i~~~~~~~ 699 (860)
..+..++|+| +++++++++.+ .|.+|++. +++... ......+ +.+.+++|+|+|+++ +++++ .|....+....
T Consensus 40 ~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~~ 114 (365)
T 1jof_A 40 EPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAK-QPPYAVYANPF 114 (365)
T ss_dssp CCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECS-STTCCEEEEEE
T ss_pred CCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEec-CCcceecccee
Confidence 4688999998 67778888877 99999997 542211 1111111 235678999999863 34442 11100000000
Q ss_pred cccCCCcEEEEeCCC-CCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-CCcee-eEEec--cCCC
Q psy4578 700 EENYDQKLMIWDTRS-HNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLK-LHSFE--SHKD 773 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~-~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-~~~~~-~~~~~--~h~~ 773 (860)
...+|.+.+|++.. +.....+..+. .+...+.+++|+|+|++++++...++.|++||+. +++.. +..+. .|..
T Consensus 115 -~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 115 -YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp -SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred -ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 00233499999874 32111111111 2456799999999999744444457899999998 56532 22333 2466
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCC--CCcccccccccCCCCccEEEe----cCccC------ceEEEE-EccC
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIH----GGHTA------KISDFS-WNPN 840 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~--~~~~~~~~~~~~~~~~~i~~~----~~h~~------~I~~i~-~spd 840 (860)
.+..++|+|+|+++++++..++.|.+|++.. +...... ..+... .+|.. .+.+++ |+||
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd 265 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH--------HSFPLIPPGIPDRDPETGKGLYRADVCALTFS 265 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc--------ceEEcCCCCcCCcccccccccccccEEEECCC
Confidence 7999999999997444444578999998763 2210000 001111 12232 588999 9999
Q ss_pred CCeEEEEEeCC
Q psy4578 841 EPWVICSVSED 851 (860)
Q Consensus 841 g~~Llasgs~D 851 (860)
|++++++...+
T Consensus 266 G~~l~v~~~~~ 276 (365)
T 1jof_A 266 GKYMFASSRAN 276 (365)
T ss_dssp SSEEEEEEEES
T ss_pred CCEEEEECCCC
Confidence 99877665443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.30 E-value=5.9e-11 Score=128.98 Aligned_cols=156 Identities=7% Similarity=0.037 Sum_probs=110.9
Q ss_pred eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD 704 (860)
Q Consensus 626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d 704 (860)
++++++ ++.++++++.++.|.+||..+++ ....+..+. ..+..++|+|+|+.+++++..++.
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~------------- 66 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD------------- 66 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-------------
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCc---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc-------------
Confidence 456776 78889999999999999998753 333443322 257899999999977777767777
Q ss_pred CcEEEEeCCCCCCCCCeeeecCC------CCCeEEEEEcCCCCcEEEEeeCC------------CcEEEEeCCCCce--e
Q psy4578 705 QKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLSFNPYSEYILATGSAD------------KTVALWDLRNLKL--K 764 (860)
Q Consensus 705 g~I~iwDl~~~~~~~~~~~~~~h------~~~I~sl~~sp~g~~llasgs~D------------g~I~IWDl~~~~~--~ 764 (860)
|.+||+.++ +....+..+ ...+.+++|+|+|++ +++++.+ +.|.+||+.++.. .
T Consensus 67 --i~~~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 67 --IYGIDLDTC---KNTFHANLSSVPGEVGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp --EEEEETTTT---EEEEEEESCCSTTEEEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred --EEEEeCCCC---cEEEEEEcccccccccccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 999999876 333333322 223788999999996 5555544 8999999987432 1
Q ss_pred eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578 765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 809 (860)
Q Consensus 765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~ 809 (860)
+..+. +...+.+++|+|+|+ +++ ++ +.|.+||..+++...
T Consensus 141 ~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 141 VRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTV 180 (349)
T ss_dssp SEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEE
T ss_pred eeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceec
Confidence 23333 344688999999998 554 43 349999998866543
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.24 E-value=1.9e-10 Score=139.97 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=107.4
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-----CeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
....++.|+| ++.+++++ ||.|++||+.+++. ...+.+|.. ...+++|||||++ ++.++.++.++..
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~-l~~~~~~~~~~r~- 88 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQF-ILLEYNYVKQWRH- 88 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSE-EEEEEEEEECSSS-
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCE-EEEEECCeeeEEE-
Confidence 3467899998 67788876 89999999998643 334445443 2345899999997 5555555432211
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce-
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI- 775 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V- 775 (860)
...+.+.+||+.+++. ..+..|.+.+...+|||+|+. ||.+ .|+.|++||+.++.....+..++...+
T Consensus 89 -----~~~~~~~~~d~~~~~~----~~l~~~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 89 -----SYTASYDIYDLNKRQL----ITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp -----CEEEEEEEEETTTTEE----CCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred -----ccceEEEEEECCCCcE----EEcccCCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCcccee
Confidence 1124488999998642 335567788999999999997 6665 468999999988764222222333322
Q ss_pred ----------------EEEEEcCCCCCEEEEEE-CCCcEEEEEC
Q psy4578 776 ----------------FQVQWSPHNETILASSG-TDRRLHVWDL 802 (860)
Q Consensus 776 ----------------~~l~fsp~g~~lL~tgs-~Dg~I~iWdl 802 (860)
.++.|||||+. |+.++ .++.+.+|++
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEY 200 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred cCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEE
Confidence 34899999997 55554 3343555544
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.20 E-value=4.2e-10 Score=124.64 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=130.0
Q ss_pred eeccchhhhhhhhhcccceee-----eEeeccCCcEEEEEeC-CCc--EEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578 606 LENKTRAQICQLLDKLRLLID-----VAWHLLHESLFGSVAD-DQK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 677 (860)
Q Consensus 606 l~n~~~~~l~~l~~~~~~V~~-----v~~sp~~~~~lasgs~-DG~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp 677 (860)
........+.++..+...... .+|+| +++.|+.++. +|. |.+||+.+++ ......++...+.++.|+|
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQV---ATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCE---EEECCCSSCBCSSSCEECT
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCc---eEEeeeCCCCCccceEEcC
Confidence 333334444444444444444 88999 6666666665 774 7788887743 3333445555555788999
Q ss_pred CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE--EcCCCCcEEEE---------
Q psy4578 678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS--FNPYSEYILAT--------- 746 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~--~sp~g~~llas--------- 746 (860)
+|+. |+.++.++. +++||+.++ ........+...+.... ++|++.. ++.
T Consensus 91 dg~~-l~~~~~~~~---------------l~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~ 150 (388)
T 3pe7_A 91 DDDA-LFYVKDGRN---------------LMRVDLATL---EENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWV 150 (388)
T ss_dssp TSSE-EEEEETTTE---------------EEEEETTTC---CEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCC
T ss_pred CCCE-EEEEeCCCe---------------EEEEECCCC---cceeeeechhhcccccceeECCCCCe-eccccccCcccc
Confidence 9996 666666766 999999886 33333444555454444 4899985 442
Q ss_pred -------------eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECC------CcEEEEECCCCC
Q psy4578 747 -------------GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTD------RRLHVWDLSKIG 806 (860)
Q Consensus 747 -------------gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~D------g~I~iWdl~~~~ 806 (860)
++.++.|.+||+.++.. ..+..+...+..++|+| +|+. |+.++.+ ..|.++|.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTSCC
T ss_pred cccccchhhhhhccCCcceEEEEECCCCce--EEeecCCccccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCCCc
Confidence 22457899999998864 44445677899999999 9986 5555443 377788876522
Q ss_pred cccccccccCCCCccEEEecCcc--CceEEEEEccCCCeEEEEEeCC
Q psy4578 807 EEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 807 ~~~~~~~~~~~~~~~i~~~~~h~--~~I~~i~~spdg~~Llasgs~D 851 (860)
. ..+..+. ..+...+|+|||+.|+..+..+
T Consensus 228 ~---------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 228 M---------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp C---------------EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred e---------------EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 1 1111222 3577889999999876555443
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.20 E-value=1.4e-09 Score=118.66 Aligned_cols=215 Identities=11% Similarity=0.132 Sum_probs=143.2
Q ss_pred EEeeccchhhhhhhhh--cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---------cCCCCCeeE
Q psy4578 604 MYLENKTRAQICQLLD--KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---------DAHTAEVNC 672 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~--~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---------~~h~~~V~~ 672 (860)
++.++....++..... +.....++++++ +++++++...++.|++||..... ..+..+ .++.....+
T Consensus 71 i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 71 ILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp EEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred EEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcE
Confidence 3444444333333322 335688999998 67788888889999999986421 123333 234457899
Q ss_pred EEEcc-CCCeEEEEEe-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------CCCCeEEEEEcCCC
Q psy4578 673 LSFNP-YSEYILATGS-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------HTAEVNCLSFNPYS 740 (860)
Q Consensus 673 l~~sp-~g~~llasgs-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h~~~I~sl~~sp~g 740 (860)
++++| ++. ++++.+ .++. |++||.. + ..+..+.. +-....+++++|++
T Consensus 148 ia~~~~~g~-lyv~d~~~~~~---------------I~~~~~~-g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 148 VAVEPSTGA-VFVSDGYCNSR---------------IVQFSPS-G---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp EEECTTTCC-EEEEECSSCCE---------------EEEECTT-S---CEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred EEEeCCCCe-EEEEeCCCCCe---------------EEEEcCC-C---CEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 99999 555 677775 5776 8888843 2 23333321 22347899999995
Q ss_pred CcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCceEEEEEcCCCCCEEEEEE-------CCCcEEEEECCCCCccccc
Q psy4578 741 EYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSPHNETILASSG-------TDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~~l~fsp~g~~lL~tgs-------~Dg~I~iWdl~~~~~~~~~ 811 (860)
..++++...++.|++||..+++. +..+ ..+...+.+++|+| +. ++++.+ .++.|++||..++.....+
T Consensus 208 g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 208 DQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp TEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 55788888899999999987665 5555 34567889999999 32 233333 3458999998875432221
Q ss_pred ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
. ...++...+.+++++|+| .++++...++.|++
T Consensus 285 ~-----------~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 285 K-----------PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWK 317 (329)
T ss_dssp C-----------CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEE
T ss_pred c-----------CCCCccCCeeEEEECCCC-CEEEEECCCCEEEE
Confidence 1 013566778999999999 47888888887764
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.19 E-value=4e-10 Score=137.10 Aligned_cols=219 Identities=10% Similarity=0.065 Sum_probs=134.5
Q ss_pred EEEeeccchhhhhhhhhccc------ceeeeEeeccCCcEEEEEeCC---------CcEEEEEcCCCCcccCeeeccCCC
Q psy4578 603 VMYLENKTRAQICQLLDKLR------LLIDVAWHLLHESLFGSVADD---------QKLMIWDTRSHNVSKPSHTVDAHT 667 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~------~V~~v~~sp~~~~~lasgs~D---------G~I~IWd~~~~~~~~~~~~~~~h~ 667 (860)
.+++|+...++...++..+. ...+++|+| +++.++.++.+ +.+.+||+.+++. ..+..|.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l~~~~ 111 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERIP 111 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCCC
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcE----EEcccCC
Confidence 45566665555444433221 223478999 67777777765 5677999998532 3455677
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCe----------------
Q psy4578 668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV---------------- 731 (860)
Q Consensus 668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I---------------- 731 (860)
+.+...+|||||+. ++.+. ++. |++||+.++... ..+..++...+
T Consensus 112 ~~~~~~~~SPdG~~-la~~~-~~~---------------i~~~~~~~~~~~--~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 112 NNTQWVTWSPVGHK-LAYVW-NND---------------IYVKIEPNLPSY--RITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp TTEEEEEECSSTTC-EEEEE-TTE---------------EEEESSTTSCCE--ECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred CcceeeEECCCCCE-EEEEE-CCe---------------EEEEECCCCceE--EEcCCCCccceecCcccccccchhcCC
Confidence 88999999999997 45553 455 889998776321 11122222222
Q ss_pred -EEEEEcCCCCcEEEEeeCC-C-----------------------------------cEEEEeCCC---Cce-eeEEec-
Q psy4578 732 -NCLSFNPYSEYILATGSAD-K-----------------------------------TVALWDLRN---LKL-KLHSFE- 769 (860)
Q Consensus 732 -~sl~~sp~g~~llasgs~D-g-----------------------------------~I~IWDl~~---~~~-~~~~~~- 769 (860)
.++.|||||++ ||.++.| + .|++||+.+ +.. ....+.
T Consensus 173 ~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 173 YSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 35899999997 5555422 1 488899988 621 122333
Q ss_pred -----cCCCceEEEEEcCCCCCEEEEEEC---CCcEEEEECCCCC----cccccccccCCCCccEEEecCccCce-----
Q psy4578 770 -----SHKDEIFQVQWSPHNETILASSGT---DRRLHVWDLSKIG----EEQSTEDAEDGPPELLFIHGGHTAKI----- 832 (860)
Q Consensus 770 -----~h~~~V~~l~fsp~g~~lL~tgs~---Dg~I~iWdl~~~~----~~~~~~~~~~~~~~~i~~~~~h~~~I----- 832 (860)
+|...+..++|+|||+.++..... +..|.+||+.++. +.... .+ ...+|.+.|
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~---------~l-~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR---------QH-IEMSTTGWVGRFRP 321 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG---------CE-EEECSSSCSSSSSC
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE---------Ee-eeccCCceEccCcC
Confidence 377789999999999853333322 3479999998865 21111 00 012333333
Q ss_pred EEEEEccCCCeEE-EEEeCCCeEee
Q psy4578 833 SDFSWNPNEPWVI-CSVSEDNIMQK 856 (860)
Q Consensus 833 ~~i~~spdg~~Ll-asgs~Dg~IrI 856 (860)
.+.+|+|||+.++ .....+|.-+|
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEE
T ss_pred CCceEcCCCCEEEEEEEcCCCceEE
Confidence 3678999999866 45445664443
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.17 E-value=3.7e-10 Score=125.12 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=128.5
Q ss_pred EEeeccchhhhhhhhhccc-ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe----------------------
Q psy4578 604 MYLENKTRAQICQLLDKLR-LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS---------------------- 660 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~-~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~---------------------- 660 (860)
++.++....+..++...+. .+.++.|+| +++.|+.++.++.|.+||+.+++.....
T Consensus 62 l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 62 YYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp EEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred EEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence 4555655666555554443 445788998 7777888888888999998765321000
Q ss_pred ----------------------------------------eeccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccc
Q psy4578 661 ----------------------------------------HTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 661 ----------------------------------------~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~ 699 (860)
..+..+...+..+.|+| +|+.++.+. .++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~-~~~~-------- 211 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCH-EGPH-------- 211 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEE-CSCT--------
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEE-ecCC--------
Confidence 00011223345566666 665433322 2110
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCC--CCeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCcee-eEEeccCC
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHT--AEVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLK-LHSFESHK 772 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~--~~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~-~~~~~~h~ 772 (860)
......|.++|...+. ...+..+. ..+...+|+|+|+.+++++..++ .|++||+.++... +..+.++.
T Consensus 212 -~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 286 (388)
T 3pe7_A 212 -DLVDARMWLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS 286 (388)
T ss_dssp -TTSSCSEEEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE
T ss_pred -CCCcceEEEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce
Confidence 0012347778876542 22333333 35778999999997545444332 3999999988741 22333211
Q ss_pred Cc---eEEEEEcCCCCCEEEEE--------ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC-----------
Q psy4578 773 DE---IFQVQWSPHNETILASS--------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA----------- 830 (860)
Q Consensus 773 ~~---V~~l~fsp~g~~lL~tg--------s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~----------- 830 (860)
.. ....+|+|+|+.++++. +.+..|++||+.++... .+..+..
T Consensus 287 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~~~~~~ 351 (388)
T 3pe7_A 287 HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH---------------RVARHDTSWKVFEGDRQV 351 (388)
T ss_dssp EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE---------------EEEECCCCCCCBTTBSST
T ss_pred eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE---------------EeccccCccccccccccc
Confidence 00 11237999999855443 45678999999874321 1122222
Q ss_pred ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 831 KISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 831 ~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+.+++|+|||+++++++..++..++
T Consensus 352 ~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 352 THPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred CCCCccCCCCCCEEEEEecCCCceeE
Confidence 47788999999988877777776554
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.17 E-value=5.6e-09 Score=110.70 Aligned_cols=192 Identities=13% Similarity=0.137 Sum_probs=131.6
Q ss_pred cceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
..+.++++.+.++.++++... ++.|.+||. ++ ..+..+. .+...+.+++++++|+ ++++...++.
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~-------- 143 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG---QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMR-------- 143 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS---CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTE--------
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC---cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCE--------
Confidence 467899996436777776643 889999994 43 2233332 3445789999999997 6777766676
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC--CCce
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH--KDEI 775 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h--~~~V 775 (860)
|.+||... ..+..+. .+...+.+++++|+|. ++++.+.++.|++||..... +..+..+ ...+
T Consensus 144 -------i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~~~g~~~~p 209 (286)
T 1q7f_A 144 -------VIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY--LRQIGGEGITNYP 209 (286)
T ss_dssp -------EEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE--EEEESCTTTSCSE
T ss_pred -------EEEEcCCC----CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE--EEEEccCCccCCC
Confidence 88888643 2333332 3456789999999988 68887889999999985532 4455433 3678
Q ss_pred EEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccccccccCCCCccEEEecC--ccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 776 FQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~--h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
.+++++++|. ++++...++ .|.+||... .. +..... ....+.+++++|+|. ++++ +.|+
T Consensus 210 ~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g-~~--------------~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~ 271 (286)
T 1q7f_A 210 IGVGINSNGE-ILIADNHNNFNLTIFTQDG-QL--------------ISALESKVKHAQCFDVALMDDGS-VVLA-SKDY 271 (286)
T ss_dssp EEEEECTTCC-EEEEECSSSCEEEEECTTS-CE--------------EEEEEESSCCSCEEEEEEETTTE-EEEE-ETTT
T ss_pred cEEEECCCCC-EEEEeCCCCEEEEEECCCC-CE--------------EEEEcccCCCCcceeEEECCCCc-EEEE-CCCC
Confidence 9999999996 577776675 999999543 11 122222 223578999999997 6666 4577
Q ss_pred eEee-cc
Q psy4578 853 IMQK-PF 858 (860)
Q Consensus 853 ~IrI-~f 858 (860)
.|++ +|
T Consensus 272 ~v~v~~~ 278 (286)
T 1q7f_A 272 RLYIYRY 278 (286)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 7764 44
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.16 E-value=6.1e-10 Score=133.15 Aligned_cols=200 Identities=11% Similarity=0.060 Sum_probs=135.3
Q ss_pred hhhhcccceeeeEeeccCCcEEEEE--eCCCcEEEEEcCCCCcccCeeeccCCCCCee---------EEEEc--cCCCe-
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSV--ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVN---------CLSFN--PYSEY- 681 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasg--s~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~---------~l~~s--p~g~~- 681 (860)
.+.+|...+..++|++ +.-+++++ +.++...||....+ .....+..+...+. ...|+ |||+.
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRAD---GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTT---SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCC---CCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 4556778899999996 55556666 55889999997442 23445556665555 66676 99997
Q ss_pred EEEEEeCCCceeeecccccccCCCcEEEEeCC--C-CCCCCCeeeecC-----CCCCeEEEEEcCCCCcEEEEeeCC---
Q psy4578 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTR--S-HNVSKPSHTVDA-----HTAEVNCLSFNPYSEYILATGSAD--- 750 (860)
Q Consensus 682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~--~-~~~~~~~~~~~~-----h~~~I~sl~~sp~g~~llasgs~D--- 750 (860)
++.+...+.. |.+|++. . +. ...+.. |...+.+++|+|+|+. |++++.|
T Consensus 94 la~~~~~~~~---------------l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~ 153 (662)
T 3azo_A 94 LVFTHFGDQR---------------LYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTG 153 (662)
T ss_dssp EEEEBTTTCC---------------EEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECS
T ss_pred EEEEECCCCe---------------EEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECCCCCE-EEEEEecccC
Confidence 5544433444 7777765 2 31 223333 5677899999999996 6666655
Q ss_pred -------CcEEEEeCCC------CceeeEEec-cCCCceEEEEEcCCCCCEEEEEECC--------CcEEEEECC-CCCc
Q psy4578 751 -------KTVALWDLRN------LKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTD--------RRLHVWDLS-KIGE 807 (860)
Q Consensus 751 -------g~I~IWDl~~------~~~~~~~~~-~h~~~V~~l~fsp~g~~lL~tgs~D--------g~I~iWdl~-~~~~ 807 (860)
..|++||+.+ +. ...+. .+...+.+++|+|||++ |+.++.+ ..|++||+. ++..
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred CCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999988 44 34555 56678888999999997 5555533 479999988 3310
Q ss_pred ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
........+|...+..++|+|||+ ++++++.++..
T Consensus 231 -----------~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~ 265 (662)
T 3azo_A 231 -----------ADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWW 265 (662)
T ss_dssp -----------EEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSC
T ss_pred -----------cccEEeCCCCCceEcceEECCCCe-EEEEECCCCCe
Confidence 011222334567899999999999 77788888743
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.14 E-value=1.1e-09 Score=130.96 Aligned_cols=225 Identities=11% Similarity=-0.001 Sum_probs=128.1
Q ss_pred hhhhhhhhccccee---------eeEee--ccCCcEEEEEe-CCCcEEEEEcC--C-CCcccCeeeccC-----CCCCee
Q psy4578 612 AQICQLLDKLRLLI---------DVAWH--LLHESLFGSVA-DDQKLMIWDTR--S-HNVSKPSHTVDA-----HTAEVN 671 (860)
Q Consensus 612 ~~l~~l~~~~~~V~---------~v~~s--p~~~~~lasgs-~DG~I~IWd~~--~-~~~~~~~~~~~~-----h~~~V~ 671 (860)
+...++..+...+. ...|+ |+++.+++.++ .++.|.+|+.. . +. ...+.. |...+.
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~ 133 (662)
T 3azo_A 58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWA 133 (662)
T ss_dssp SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEE
T ss_pred CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccCCccCCCCcccc
Confidence 33444555555555 66676 74444155443 35566666664 2 22 233333 567889
Q ss_pred EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC--CCCeeeec-CCCCCeEEEEEcCCCCcEEEEee
Q psy4578 672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV--SKPSHTVD-AHTAEVNCLSFNPYSEYILATGS 748 (860)
Q Consensus 672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~--~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs 748 (860)
+++|+|||+. |++++.+.. ..........|.+||+.+... ......+. .+...+.+++|+|+|++ |+.++
T Consensus 134 ~~~~spDg~~-l~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~-la~~~ 206 (662)
T 3azo_A 134 DPVLLPERGE-VWCMAEEFT-----GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ-AVWLA 206 (662)
T ss_dssp EEEEETTTTE-EEEEEEEEC-----SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSE-EEEEE
T ss_pred CcEECCCCCE-EEEEEeccc-----CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCE-EEEEE
Confidence 9999999997 444444310 000001123499999987200 00122334 45567888999999997 55555
Q ss_pred CC--------CcEEEEeCC-CCc--eeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCccccccccc
Q psy4578 749 AD--------KTVALWDLR-NLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAE 815 (860)
Q Consensus 749 ~D--------g~I~IWDl~-~~~--~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~ 815 (860)
.+ ..|++||+. ++. .......+|...+.+++|+|+|+ ++++++.+| .|.+||..++.........
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~- 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRRE- 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCS-
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccccc-
Confidence 43 379999998 451 22333445678899999999999 788888888 5556665443321111100
Q ss_pred CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.... .....-.+..++|++++. ++++++. +.+++
T Consensus 285 ~~~~-----~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l 318 (662)
T 3azo_A 285 EEFA-----GPLWTPGMRWFAPLANGL-IAVVHGK-GAAVL 318 (662)
T ss_dssp SBSS-----CCCCSTTCCSEEECTTSC-EEEEEBS-SSCEE
T ss_pred cccc-----CccccccCceEeEeCCCE-EEEEEEc-CccEE
Confidence 0000 000011156788999988 5667766 66554
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=2.8e-09 Score=113.85 Aligned_cols=227 Identities=10% Similarity=0.018 Sum_probs=138.8
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCCCeeEEEEccCCCeE
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l 682 (860)
++.++.... ..........+.++++++ ++.++++...++.|.+||..++..........+ ....+.+++++|+|+ +
T Consensus 52 i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l 128 (296)
T 3e5z_A 52 TWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-L 128 (296)
T ss_dssp EEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-E
T ss_pred EEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-E
Confidence 344444333 333334456689999998 677877777778999999977543111111111 123567899999998 5
Q ss_pred EEEEeCCCceeeecccc--cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-
Q psy4578 683 LATGSADKTQFEVEEEE--EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR- 759 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~--~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~- 759 (860)
+++.+..|+...+.... .....+.|..++.. + .+..+..+.....+++|+|+|+. +++.+.++.|.+||+.
T Consensus 129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----TLSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNA 202 (296)
T ss_dssp EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----CEEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECS
T ss_pred EEECCccccccccccccccccCCCcEEEEECCC-C----CEEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECC
Confidence 66633222100000000 00112235555543 2 23344456677899999999996 4888888999999997
Q ss_pred CCce--eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578 760 NLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 837 (860)
Q Consensus 760 ~~~~--~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~ 837 (860)
++.. ....+..+...+.+++++++|. ++++. ++.|.+||... ..+.....+.. +++++|
T Consensus 203 ~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g---------------~~~~~~~~~~~-~~~~~f 263 (296)
T 3e5z_A 203 RGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG---------------DELGRVLTPQT-TSNLCF 263 (296)
T ss_dssp SSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS---------------CEEEEEECSSC-CCEEEE
T ss_pred CCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC---------------CEEEEEECCCC-ceeEEE
Confidence 3332 0122333556677899999997 34444 88999999753 22333444555 899999
Q ss_pred -ccCCCeEEEEEeCCCeEeeccC
Q psy4578 838 -NPNEPWVICSVSEDNIMQKPFK 859 (860)
Q Consensus 838 -spdg~~Llasgs~Dg~IrI~f~ 859 (860)
+|+++.|+ .++.++..+++.+
T Consensus 264 ~~~d~~~L~-v~t~~~l~~~~~~ 285 (296)
T 3e5z_A 264 GGPEGRTLY-MTVSTEFWSIETN 285 (296)
T ss_dssp ESTTSCEEE-EEETTEEEEEECS
T ss_pred ECCCCCEEE-EEcCCeEEEEEcc
Confidence 58888644 5667899988764
No 172
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=1.7e-09 Score=120.19 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=129.4
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC--------cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN--------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~--------~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
+++.+++++ ...++++|+.+ .+.+|++.+.. ....... ..+.. |+.++| ++.. ++++ .++.
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~-L~v~-~~~~--- 107 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQ-VLVS-TRNA--- 107 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTE-EEEE-ESSE---
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCE-EEEE-cCCc---
Confidence 689999998 67788888887 56669875421 0111122 23566 999999 7875 6666 6676
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|++||+.+.. .......|...+.++.+.+. . +++++.||.+.+||+.++.. .. +...
T Consensus 108 ------------l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~-~~----~~~~ 164 (388)
T 1xip_A 108 ------------LYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKST-KQ----LAQN 164 (388)
T ss_dssp ------------EEEEESSSTT---CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCE-EE----EEES
T ss_pred ------------EEEEEchhhh---ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcc-cc----ccCC
Confidence 9999998763 34455667788888887754 2 77889999999999998765 22 4468
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc--ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGE--EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~--~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
|+|++|+|+| ++.|..||++++|+...... ...+.. + ..+....+|...|.+++|.+++.++++-+.
T Consensus 165 Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~----P-p~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 165 VTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSL----P-SELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECC----C-HHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred ceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecC----C-cccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 9999999999 46788999999998776432 111100 0 000001146788999999999997665443
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.10 E-value=1.3e-08 Score=107.84 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=132.7
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEc-cCCCeEEEEEeC-CC
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFN-PYSEYILATGSA-DK 690 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~s-p~g~~llasgs~-Dg 690 (860)
++...+.++++++ ++.++++.+.++.|.+||... . ....+. ++...+.+++++ +++. +++++.. ++
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-R---FKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-C---EEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGC
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-c---EEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCC
Confidence 4456788999998 677888888899999999763 2 222221 234578899995 5554 5666533 56
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 769 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~ 769 (860)
. |.+||. ++ ..+..+. .+...+.+++++|+|. ++++...++.|.+||..... +..+.
T Consensus 101 ~---------------i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~ 158 (286)
T 1q7f_A 101 Q---------------IQIYNQ-YG---QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFG 158 (286)
T ss_dssp E---------------EEEECT-TS---CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEE
T ss_pred E---------------EEEECC-CC---cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE--EEEeC
Confidence 5 889984 33 3333332 3445789999999997 67787788999999975433 33343
Q ss_pred --cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec--CccCceEEEEEccCCCeEE
Q psy4578 770 --SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVI 845 (860)
Q Consensus 770 --~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~--~h~~~I~~i~~spdg~~Ll 845 (860)
.+...+.+++++++|+ ++++.+.++.|++||... . .+.... ++...+.+++++++|. ++
T Consensus 159 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~--------------~~~~~~~~g~~~~p~~i~~d~~G~-l~ 221 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG-Q--------------YLRQIGGEGITNYPIGVGINSNGE-IL 221 (286)
T ss_dssp CTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC-C--------------EEEEESCTTTSCSEEEEEECTTCC-EE
T ss_pred CCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC-C--------------EEEEEccCCccCCCcEEEECCCCC-EE
Confidence 4456789999999997 577777899999999743 1 122222 2335788999999997 56
Q ss_pred EEEeCCC-eEee
Q psy4578 846 CSVSEDN-IMQK 856 (860)
Q Consensus 846 asgs~Dg-~IrI 856 (860)
++...++ .|.+
T Consensus 222 v~~~~~~~~i~~ 233 (286)
T 1q7f_A 222 IADNHNNFNLTI 233 (286)
T ss_dssp EEECSSSCEEEE
T ss_pred EEeCCCCEEEEE
Confidence 6666654 5543
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.10 E-value=1e-08 Score=107.33 Aligned_cols=193 Identities=5% Similarity=0.005 Sum_probs=133.0
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
...+.++++++ ++.++++.. ++.|.+||...... ..+. .....+.+++++++|. ++++...++.
T Consensus 66 ~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~----~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~-------- 130 (270)
T 1rwi_B 66 LYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ----TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNR-------- 130 (270)
T ss_dssp CCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC----EECCCCSCSSEEEEEECTTCC-EEEEEGGGTE--------
T ss_pred cCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE----eeeecCCcCCCcceEECCCCC-EEEEECCCCE--------
Confidence 35688999998 566666655 88999999875321 2222 2235689999999887 6777666666
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
|.+|+..+. ............+.+++++|+|. ++++...++.|.+||..+... ......+...+.+++
T Consensus 131 -------i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 131 -------VVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIA 198 (270)
T ss_dssp -------EEEECTTCC---SCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEE
T ss_pred -------EEEEECCCc---eeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce-EeecccCCCCceEEE
Confidence 888865443 21111222334678899999997 677777788999999887654 222223336789999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
++++|. ++++...++.|.+||....... .....+...+.+++++++|. ++++...++.|++
T Consensus 199 ~d~~g~-l~v~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 199 VDEAGT-VYVTEHNTNQVVKLLAGSTTST--------------VLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVK 259 (270)
T ss_dssp ECTTCC-EEEEETTTSCEEEECTTCSCCE--------------ECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEE
T ss_pred ECCCCC-EEEEECCCCcEEEEcCCCCcce--------------eeccCCCCCceeEEECCCCC-EEEEECCCCEEEE
Confidence 999994 5666667889999998652211 11112335689999999998 7888888888875
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.06 E-value=1.8e-08 Score=109.30 Aligned_cols=207 Identities=10% Similarity=0.070 Sum_probs=129.3
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+...+.+++|++ ++.+++++..++.|.+||..++.. ......+...+.+++|+++|+ +++++..++.
T Consensus 43 ~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~-------- 109 (333)
T 2dg1_A 43 KGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFK-------- 109 (333)
T ss_dssp SCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSC-EEEEECTTSS--------
T ss_pred cCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE---EEEeeCCCCCcceEEECCCCc-EEEEeCCCCC--------
Confidence 444568899998 677888888899999999987532 222224567899999999997 5666655410
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeEEeccCCC
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLHSFESHKD 773 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~~~~~h~~ 773 (860)
..+.|.+||..++.. ..+.....+...+.+++++|+|. ++++... .+.|..||..+... ..+..+..
T Consensus 110 ---~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 182 (333)
T 2dg1_A 110 ---STGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNIS 182 (333)
T ss_dssp ---SCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEES
T ss_pred ---CCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEE--EEeecCCC
Confidence 012288999876532 10111112446789999999997 4655543 35566666655443 22223334
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC-cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG-EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~-~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
.+..++|+|+|+.++++.+.++.|.+||+.+.. ...... ........++ ..+.+++++++|. ++++...++
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~------~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~ 254 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG------ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQG 254 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE------EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTT
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc------ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCC
Confidence 578999999998656666678999999986421 111000 0011112222 4678899999998 455555555
Q ss_pred eE
Q psy4578 853 IM 854 (860)
Q Consensus 853 ~I 854 (860)
.|
T Consensus 255 ~v 256 (333)
T 2dg1_A 255 RV 256 (333)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.05 E-value=1.3e-08 Score=110.84 Aligned_cols=183 Identities=11% Similarity=0.162 Sum_probs=127.6
Q ss_pred cccceeeeEeeccCCcEEEEEeCC------------------------CcEEEEEcCCCCcccCeeecc-CCCCCeeEEE
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADD------------------------QKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLS 674 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~D------------------------G~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~ 674 (860)
..+.+.+++++| +++++++.+.+ +.|.+||..++.. ..... ++-.....++
T Consensus 22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~p~gia 97 (329)
T 3fvz_A 22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---LQSSGKNLFYLPHGLS 97 (329)
T ss_dssp CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---EEEECTTTCSSEEEEE
T ss_pred ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---EeccCCCccCCceEEE
Confidence 357799999998 67888887777 4799999987543 33322 3445789999
Q ss_pred EccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---------cCCCCCeEEEEEcC-CCCcEE
Q psy4578 675 FNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---------DAHTAEVNCLSFNP-YSEYIL 744 (860)
Q Consensus 675 ~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---------~~h~~~I~sl~~sp-~g~~ll 744 (860)
++++|+ ++++...++. |++||..... ..+..+ .++.....+++++| ++. ++
T Consensus 98 ~d~~g~-l~v~d~~~~~---------------v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-ly 158 (329)
T 3fvz_A 98 IDTDGN-YWVTDVALHQ---------------VFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VF 158 (329)
T ss_dssp ECTTSC-EEEEETTTTE---------------EEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EE
T ss_pred ECCCCC-EEEEECCCCE---------------EEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EE
Confidence 999998 6888877777 8889875431 133333 24455789999999 566 67
Q ss_pred EEee-CCCcEEEEeCCCCceeeEEecc----------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578 745 ATGS-ADKTVALWDLRNLKLKLHSFES----------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 813 (860)
Q Consensus 745 asgs-~Dg~I~IWDl~~~~~~~~~~~~----------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~ 813 (860)
++.+ .++.|++||.. +.. +..+.. +-....+++++|++..++++...+++|++||..++.....+.
T Consensus 159 v~d~~~~~~I~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~- 235 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK- 235 (329)
T ss_dssp EEECSSCCEEEEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-
T ss_pred EEeCCCCCeEEEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-
Confidence 7776 68999999954 443 444432 223489999999955578888889999999988644322211
Q ss_pred ccCCCCccEEEecCccCceEEEEEcc
Q psy4578 814 AEDGPPELLFIHGGHTAKISDFSWNP 839 (860)
Q Consensus 814 ~~~~~~~~i~~~~~h~~~I~~i~~sp 839 (860)
...+...+.+++|+|
T Consensus 236 -----------~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 236 -----------HASFGRNVFAISYIP 250 (329)
T ss_dssp -----------CTTTTTCEEEEEEET
T ss_pred -----------ccccCCCcceeeecC
Confidence 123455677788888
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.05 E-value=4.4e-09 Score=114.54 Aligned_cols=214 Identities=11% Similarity=0.090 Sum_probs=120.9
Q ss_pred eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---Cc--EEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578 601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 675 (860)
Q Consensus 601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~ 675 (860)
...+++++....+...+ ..+.+++|+| +++.++.++.+ +. |.+|++.+++. . .+..+.. +.+++|
T Consensus 42 ~~~l~~~d~~~~~~~~l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~---~-~l~~~~~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSS---K-KILEAKN-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEEEE----ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEE---E-EEEEESE-EEEEEE
T ss_pred cceEEEEeCCCCceEEc----ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCce---E-EEEcCCC-ccceeE
Confidence 34455666555443333 5788999999 66666665543 33 77777776422 2 2222234 999999
Q ss_pred ccCCCeEEEEEeCCCc---e-----eeeccccc---ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578 676 NPYSEYILATGSADKT---Q-----FEVEEEEE---ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744 (860)
Q Consensus 676 sp~g~~llasgs~Dg~---i-----~~~~~~~~---~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll 744 (860)
+|+|+.++.++..... - ..+..+.. ......|.+||+.+++ .+..+.. . .+..++|+|+| ++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spdg--~~ 184 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRDK--IV 184 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETTE--EE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCCe--EE
Confidence 9999975555432100 0 00000000 0113458999998752 2133333 3 78899999999 57
Q ss_pred EEeeCCC-------cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--------CcEEEEECCCCCccc
Q psy4578 745 ATGSADK-------TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--------RRLHVWDLSKIGEEQ 809 (860)
Q Consensus 745 asgs~Dg-------~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--------g~I~iWdl~~~~~~~ 809 (860)
++++.++ ...||.+.++. ...+..+ ..+.++ +|+|+. |+.++.+ +.|.+|| ++..
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~-- 254 (347)
T 2gop_A 185 VNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEV-- 254 (347)
T ss_dssp EEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCE--
T ss_pred EEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC--CCce--
Confidence 6765542 34455444433 3334334 455544 999997 4455433 4677787 3211
Q ss_pred ccccccCCCCccEEEecCccCceEE-EEEccCCCeEEEEEeCCCeEee
Q psy4578 810 STEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 810 ~~~~~~~~~~~~i~~~~~h~~~I~~-i~~spdg~~Llasgs~Dg~IrI 856 (860)
.....+|...+.. +.|+ +| ++++++.++.+++
T Consensus 255 ------------~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l 287 (347)
T 2gop_A 255 ------------MGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL 287 (347)
T ss_dssp ------------EESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred ------------EeccccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence 1122345566775 8898 77 6777888877665
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.03 E-value=2.9e-08 Score=107.54 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=132.8
Q ss_pred EEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578 604 MYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 678 (860)
Q Consensus 604 l~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 678 (860)
++.++....+..... .+...+.+++|++ ++++++++..+ +.|.+||..++...... ....+...+.+++++|+
T Consensus 68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 68 IFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp EEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCC
Confidence 444555444443333 3456799999998 67777777666 68999998875321111 11124467899999999
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
|. ++++...+.. ....+.|..||..++ ....+..+...+.+++|+|+|..++++.+.++.|.+||.
T Consensus 146 g~-l~v~~~~~~~---------~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 146 GG-FYFTDFRGYS---------TNPLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp SC-EEEEECCCBT---------TBCCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CC-EEEEeccccc---------cCCCceEEEEeCCCC----EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 97 4555443100 001123556665443 122222233457899999999866667677899999999
Q ss_pred CC-CceeeE--------EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578 759 RN-LKLKLH--------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829 (860)
Q Consensus 759 ~~-~~~~~~--------~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~ 829 (860)
.+ +.. .. .+.++ ..+..++++++|. ++++...++.|.+||... .....+... . ...+|.
T Consensus 212 ~~~g~~-~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g-~~~~~~~~~----~----~~~g~~ 279 (333)
T 2dg1_A 212 EDDGVT-IQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG-YPIGQILIP----G----RDEGHM 279 (333)
T ss_dssp CTTSSS-EEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS-CEEEEEECT----T----GGGTCS
T ss_pred cCCCcC-cccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC-CEEEEEEcC----C----Cccccc
Confidence 64 221 11 11222 4678899999997 566767789999999742 211111000 0 001222
Q ss_pred CceEEEEEccCCCeEEEEEeCC
Q psy4578 830 AKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 830 ~~I~~i~~spdg~~Llasgs~D 851 (860)
..+.+++|+|++..|++++..+
T Consensus 280 ~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 280 LRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CBCCEEEECTTSCEEEEEEECG
T ss_pred cCcceEEECCCCCEEEEEeCcc
Confidence 3688999999988777666653
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.02 E-value=9.6e-09 Score=109.66 Aligned_cols=198 Identities=12% Similarity=0.085 Sum_probs=130.0
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+.....+++|+|+++.+++++..++.|..|+..++ ...+..+...+.+++++++|. ++++...++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~-------- 91 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRR-------- 91 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCC-EEEEETTTTE--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCc-EEEEecCCCe--------
Confidence 34456789999954448888999999999999863 344555677899999999998 5666655566
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEE----ee-------------CCCcEEEEeCCCC
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILAT----GS-------------ADKTVALWDLRNL 761 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llas----gs-------------~Dg~I~IWDl~~~ 761 (860)
|.+||..++..........+ ....+.+++++|+|. ++++ |+ ..+.|..+|.. +
T Consensus 92 -------i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 92 -------LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp -------EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred -------EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 88999876532111111111 123467899999998 5766 33 13456666655 3
Q ss_pred ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc-cccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 840 (860)
Q Consensus 762 ~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~-~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd 840 (860)
. ...+..+......++|+|+|+. +++.+.++.|.+|++...... .. ..+. ..+.+.+.+++++++
T Consensus 163 ~--~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~---------~~~~--~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 163 T--LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQ---------GVHF--TVEPGKTDGLRVDAG 228 (296)
T ss_dssp C--EEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEE---------EEEE--CCSSSCCCSEEEBTT
T ss_pred C--EEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCC---------CeEe--eCCCCCCCeEEECCC
Confidence 3 3444556677899999999986 477788899999998731111 00 0111 234556778999999
Q ss_pred CCeEEEEEeCCCeEee
Q psy4578 841 EPWVICSVSEDNIMQK 856 (860)
Q Consensus 841 g~~Llasgs~Dg~IrI 856 (860)
|+ ++++. .+++.++
T Consensus 229 G~-l~v~~-~~~v~~~ 242 (296)
T 3e5z_A 229 GL-IWASA-GDGVHVL 242 (296)
T ss_dssp SC-EEEEE-TTEEEEE
T ss_pred CC-EEEEc-CCeEEEE
Confidence 98 45555 4444444
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=3.5e-08 Score=119.23 Aligned_cols=218 Identities=10% Similarity=-0.016 Sum_probs=140.0
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc----------------EEEEEcCCCCcc-cCeeeccC
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK----------------LMIWDTRSHNVS-KPSHTVDA 665 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~----------------I~IWd~~~~~~~-~~~~~~~~ 665 (860)
.+++++...++..........+.+++|+| +++.|+.++.++. |.+|++.++... ..+.....
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 56677766666554333334578899999 6777777777665 999999875321 12222233
Q ss_pred CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCC------CCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578 666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRS------HNVSKPSHTVDAHTAEVNCLSFNPY 739 (860)
Q Consensus 666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~------~~~~~~~~~~~~h~~~I~sl~~sp~ 739 (860)
|...+.++.|+|+|++++++...... .+..|.+||+.+ +. .....+..+...+.. .|+|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~-----------~~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCD-----------PVNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSS-----------SCCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCC-----------CccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEecc
Confidence 55668899999999986655542210 134599999976 32 134455556666555 58899
Q ss_pred CCcEEEEeeCC---CcEEEEeCCCCce-eeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCc--EEEEECCCCCccccc
Q psy4578 740 SEYILATGSAD---KTVALWDLRNLKL-KLHSFESHKD--EIFQVQWSPHNETILASSGTDRR--LHVWDLSKIGEEQST 811 (860)
Q Consensus 740 g~~llasgs~D---g~I~IWDl~~~~~-~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~--I~iWdl~~~~~~~~~ 811 (860)
|..+++.+..+ +.|.+||+.++.. ....+..|.. .+.+++|++++ .+++++..|+. |.+||+.++.
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~----- 370 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA----- 370 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC-----
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC-----
Confidence 98756555443 3699999987641 1234444543 68889998655 46888888885 5556654422
Q ss_pred ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
.+..+..+.+.|..+.++|++..++++.+.
T Consensus 371 ---------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 371 ---------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp ---------EEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred ---------EEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence 223344456778889999999876666554
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.96 E-value=1.2e-08 Score=123.41 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=130.6
Q ss_pred cceeeeEeeccCCcEEEEEeC-CC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee-
Q psy4578 622 RLLIDVAWHLLHESLFGSVAD-DQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV- 695 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~-DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~- 695 (860)
..+.+++|+| +++.++.++. +| .|++||+.+++. ..... ....+.+++|+|||+.++. ++.++.-...
T Consensus 125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~---~~~~~-~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~ 198 (710)
T 2xdw_A 125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKE---LPDVL-ERVKFSCMAWTHDGKGMFY-NAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEE---EEEEE-EEECSCCEEECTTSSEEEE-EECCCCSSCCS
T ss_pred EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCC---Ccccc-cCcccceEEEEeCCCEEEE-EEECCcccccc
Confidence 3688999999 6666665544 33 899999988643 22111 1223678999999997544 4444320000
Q ss_pred cccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCC------Ccee
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSA----DKTVALWDLRN------LKLK 764 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~------~~~~ 764 (860)
...........|++|++.++... ..+.....|...+.++.|+|+|+++++++.. +..|++||+.+ +...
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 00001122345999999876321 1222223355668899999999985555432 56899999986 4322
Q ss_pred eEEeccCCCceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCcc--CceEEEEEcc
Q psy4578 765 LHSFESHKDEIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNP 839 (860)
Q Consensus 765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~--~~I~~i~~sp 839 (860)
...+..+...+.. .|+|+|+.+++.+..+ +.|.+||+.+.... ....+..|. ..+.+++|++
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KWKVLVPEHEKDVLEWVACVR 345 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCEEEEEEEET
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cceeccCCCCCCeEEEEEEEc
Confidence 4556666666655 4889998755555433 36999998764210 011122232 3678899986
Q ss_pred CCCeEEEEEeCCCeEee
Q psy4578 840 NEPWVICSVSEDNIMQK 856 (860)
Q Consensus 840 dg~~Llasgs~Dg~IrI 856 (860)
++. ++++...|+..+|
T Consensus 346 ~~~-lv~~~~~~g~~~l 361 (710)
T 2xdw_A 346 SNF-LVLCYLHDVKNTL 361 (710)
T ss_dssp TTE-EEEEEEETTEEEE
T ss_pred CCE-EEEEEEECCEEEE
Confidence 554 7888888886654
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.95 E-value=3.7e-08 Score=109.04 Aligned_cols=210 Identities=9% Similarity=0.033 Sum_probs=117.3
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccC------CC
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDA------HT 667 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~------h~ 667 (860)
++.++....++.........- .++|+| ++++++++. .++.|.+||..+.+. +..+.. +.
T Consensus 33 v~v~D~~t~~~~~~i~~g~~p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 33 VHVYDYTNGKFLGMVPTAFNG-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---EKEISLPPKRVQGL 107 (361)
T ss_dssp EEEEETTTCCEEEEEECCEEE-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---EEEEEECTTBCCBC
T ss_pred EEEEECCCCeEEEEecCCCCC-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcE---EEEEEcCccccccC
Confidence 444454444443333222223 899999 666666664 367899999987533 333321 23
Q ss_pred CCeeEEEEccCCCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEE
Q psy4578 668 AEVNCLSFNPYSEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 668 ~~V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~lla 745 (860)
.....++++|+|++++++... +++ |.+||+.++ +.+.. +.. . ....+.+.|++...++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~---------------v~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATS---------------IGIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFM 167 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEE---------------EEEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCe---------------EEEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEE
Confidence 456789999999986555443 566 889998876 33333 221 1 1122334454433344
Q ss_pred EeeCCCcEEEEeCCC------------------------------------------------Cceee-EEecc------
Q psy4578 746 TGSADKTVALWDLRN------------------------------------------------LKLKL-HSFES------ 770 (860)
Q Consensus 746 sgs~Dg~I~IWDl~~------------------------------------------------~~~~~-~~~~~------ 770 (860)
+.+.||.+.+|+... ....+ ..+..
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 555555555554432 11100 00000
Q ss_pred CC----CceEEEEEcCCCCCEEEEEE----------CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578 771 HK----DEIFQVQWSPHNETILASSG----------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 836 (860)
Q Consensus 771 h~----~~V~~l~fsp~g~~lL~tgs----------~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~ 836 (860)
+. .....++|+|++..++++.. .++.|.+||+.+. +.+.....+. +.+++
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------------~~v~~i~~~~--p~~ia 311 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------------QRVARIPGRD--ALSMT 311 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------------EEEEEEECTT--CCEEE
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------------cEEEEEecCC--eeEEE
Confidence 00 00112678898887665554 1347999998874 3344444554 89999
Q ss_pred EccCCCeEEEEEeCCCeEee
Q psy4578 837 WNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 837 ~spdg~~Llasgs~Dg~IrI 856 (860)
|+|||+++++++ . +.|.+
T Consensus 312 ~spdg~~l~v~n-~-~~v~v 329 (361)
T 2oiz_A 312 IDQQRNLMLTLD-G-GNVNV 329 (361)
T ss_dssp EETTTTEEEEEC-S-SCEEE
T ss_pred ECCCCCEEEEeC-C-CeEEE
Confidence 999999766544 4 66554
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.93 E-value=5.8e-08 Score=107.40 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=123.3
Q ss_pred cceeeeEeeccCCcEEEEEe-C-CCcEEEEEcCCCCcccCeee-ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVA-D-DQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs-~-DG~I~IWd~~~~~~~~~~~~-~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
.....++++| ++++++++. . +++|.+||+.++ +.+.. +.. . ....+.+.|++...+++.+.||.+..+...
T Consensus 108 ~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 108 NYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred CCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 4577899999 666666655 3 689999999885 33444 322 1 122244555554445555556655444332
Q ss_pred cc---------------------------------ccCCCcEEEEeCCCCCCCCCeeeecC------C----CCCeEEEE
Q psy4578 699 EE---------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA------H----TAEVNCLS 735 (860)
Q Consensus 699 ~~---------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~------h----~~~I~sl~ 735 (860)
.. ...++.+.++|+..... .....+.- + ......++
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEE
Confidence 11 01245678888764321 11111100 0 01112378
Q ss_pred EcCCCCcEEEEee----------CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578 736 FNPYSEYILATGS----------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805 (860)
Q Consensus 736 ~sp~g~~llasgs----------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~ 805 (860)
++|++..++++.+ ..+.|.+||+.+.+. +..+..+. +.+++|+|+|++ |++++. +.|.+||..++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTE-EEEECS-SCEEEEECSSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCC
Confidence 9999887666554 134799999999886 77777766 999999999996 666665 99999999884
Q ss_pred CcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
.. +.+.....+......++++|+|+
T Consensus 336 ~l------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EP------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SC------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred cc------------eeeEEeccCCCCcEEEEecCCCC
Confidence 10 33444445667788899999986
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.92 E-value=3.8e-09 Score=116.89 Aligned_cols=185 Identities=7% Similarity=0.014 Sum_probs=113.7
Q ss_pred eeeeEeeccCCcEEEEEe-CCC--cEEEEEcCCCCcccCeeeccCCCCC-eeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 624 LIDVAWHLLHESLFGSVA-DDQ--KLMIWDTRSHNVSKPSHTVDAHTAE-VNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs-~DG--~I~IWd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+.+++|+| +++.++.+. .+| .|.+||+.+++. ..+..+... ...+.|+|+|++ ++.++.++.
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~spdg~~-l~~~~~~~~-------- 103 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQA----VQLTEGKGDNTFGGFISTDERA-FFYVKNELN-------- 103 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEE----EECCCSSCBCTTTCEECTTSSE-EEEEETTTE--------
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcE----EEeecCCCCccccceECCCCCE-EEEEEcCCc--------
Confidence 78899999 566655544 333 688888876432 222223333 334789999996 666666666
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEE-------------------EEEcCCCCcEEEEe----eCCCcEEEE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC-------------------LSFNPYSEYILATG----SADKTVALW 756 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~s-------------------l~~sp~g~~llasg----s~Dg~I~IW 756 (860)
|.+||+.+++ .......+...... +.|+|++..+++.. ..++.|.+|
T Consensus 104 -------l~~~d~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 104 -------LMKVDLETLE---EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp -------EEEEETTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred -------EEEEECCCCC---cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 8888887652 22222223332222 35678887633222 456789999
Q ss_pred eCCCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECC------CcEEEEECCCCCcccccccccCCCCccEEEecCc-
Q psy4578 757 DLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH- 828 (860)
Q Consensus 757 Dl~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~D------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h- 828 (860)
|+.++.. ..+..+...+..+.|+| +|.. ++.++.+ ..|.+||+...... ....+
T Consensus 174 d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l~~~~ 235 (396)
T 3c5m_A 174 DIETGEL--EVIHQDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVR---------------KIKEHA 235 (396)
T ss_dssp ETTTCCE--EEEEEESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCE---------------ESSCCC
T ss_pred ECCCCcE--EeeccCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCCCcee---------------EeeccC
Confidence 9988764 23334667889999999 7875 4444433 36888887653211 11111
Q ss_pred -cCceEEEEEccCCCeEEEEEeC
Q psy4578 829 -TAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 829 -~~~I~~i~~spdg~~Llasgs~ 850 (860)
...+..++|+|+|+++++++..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEE
T ss_pred CCccccceEECCCCCEEEEEecC
Confidence 2357889999999986666544
No 185
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.92 E-value=1.1e-07 Score=101.94 Aligned_cols=205 Identities=11% Similarity=0.032 Sum_probs=128.2
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-C-CCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
.....+.++++++ +++++++ . ++.|.+||..++.. ..+.... + ....+.+++++|+|+ ++++....+..
T Consensus 51 ~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~---- 121 (297)
T 3g4e_A 51 TMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETA---- 121 (297)
T ss_dssp ECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSB----
T ss_pred eCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccc----
Confidence 3456789999998 5665554 4 56899999887532 1122111 1 124578999999998 45544322210
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--CCce----eeEEecc
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKL----KLHSFES 770 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~~~~----~~~~~~~ 770 (860)
........-.+|.+... .....+..+....+.++|+|+++.++++.+.++.|.+||+. ++.. ....+..
T Consensus 122 --~~~~~~~~~~l~~~d~~---g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 122 --PAVLERHQGALYSLFPD---HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp --TTBCCTTCEEEEEECTT---SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred --cccccCCCcEEEEEECC---CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence 00000111344444332 11222223344568999999999777777888999999974 4432 1222333
Q ss_pred CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEEEEEe
Q psy4578 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVICSVS 849 (860)
Q Consensus 771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Llasgs 849 (860)
+......++++++|. +.++...++.|..||..+++ .+.....+...+++++|. |+++.|+++..
T Consensus 197 ~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~--------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 197 EEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGK--------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCC--------------EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCce--------------EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 446788999999996 56677778899999987643 333344455679999998 89998888887
Q ss_pred CCC
Q psy4578 850 EDN 852 (860)
Q Consensus 850 ~Dg 852 (860)
.++
T Consensus 262 ~~~ 264 (297)
T 3g4e_A 262 RDG 264 (297)
T ss_dssp CTT
T ss_pred CcC
Confidence 654
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.91 E-value=1.6e-07 Score=110.20 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=129.3
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcC--CCCcccCeeeccCCCCCeeEEEEc----c
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTR--SHNVSKPSHTVDAHTAEVNCLSFN----P 677 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~--~~~~~~~~~~~~~h~~~V~~l~~s----p 677 (860)
+.+.+..+.++...+.....+..+.|+| +++++++++.||.|.+||+. +. +.+..+.. ......++|+ |
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~-G~~P~~ia~s~~~~p 253 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKI-GSEARSIETSKMEGW 253 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC---CEEEEEEC-CSEEEEEEECCSTTC
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC---cEeEEEec-CCCCceeEEccccCC
Confidence 4444555555555555555677999999 78888888899999999996 43 33444443 3346899999 6
Q ss_pred CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------C-CCCeEEEEEcCCCCcEEEE
Q psy4578 678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------H-TAEVNCLSFNPYSEYILAT 746 (860)
Q Consensus 678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h-~~~I~sl~~sp~g~~llas 746 (860)
+|++++++...+++ +.++|..+. +.+..+.. | ...+..+..++++..++++
T Consensus 254 DGk~l~v~n~~~~~---------------v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 254 EDKYAIAGAYWPPQ---------------YVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp TTTEEEEEEEETTE---------------EEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCCEEEEEEccCCe---------------EEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 99987777777777 999998775 33333321 1 2267888999988766777
Q ss_pred eeCCCcEEEEeCCCCcee-eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578 747 GSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 747 gs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
...+|.|.++|....... +... .......++.|+|+|+++++++..++.|.++|+.+++.
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 777899999999876432 2222 23456778999999998777777889999999998654
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.91 E-value=1.2e-07 Score=101.30 Aligned_cols=214 Identities=11% Similarity=0.087 Sum_probs=127.6
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC-eeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP-SHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~-~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
+...+.+++++++++.++++.. ++.|.+||.. ++.... ..... .....+.+++++++|+ ++++...++.... ..
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~-~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPA-DY 144 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTS-CC
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccc-cc
Confidence 3456889999983266555544 4478899987 432111 11111 1224588999999997 4555544310000 00
Q ss_pred c-ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc----CCCCcEEEEeeCCCcEEEEeCC-CCce----eeEE
Q psy4578 698 E-EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN----PYSEYILATGSADKTVALWDLR-NLKL----KLHS 767 (860)
Q Consensus 698 ~-~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s----p~g~~llasgs~Dg~I~IWDl~-~~~~----~~~~ 767 (860)
. ......+.|..||.. + . ...+..+......++|+ |+++.++++...++.|.+||.. ++.. ....
T Consensus 145 ~~~~~~~~~~l~~~~~~-g---~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~ 219 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-G---Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH 219 (314)
T ss_dssp CBTTSSSCEEEEEECTT-S---C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred cccccCCCCeEEEECCC-C---C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence 0 000111236666654 2 2 12222233456889999 9997666666778999999986 3331 1223
Q ss_pred eccCC-CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578 768 FESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846 (860)
Q Consensus 768 ~~~h~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla 846 (860)
+..+. ..+..++++++|. ++++...++.|.+||..++... .....+...+.+++|+++|++|++
T Consensus 220 ~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~i~~~~dg~~l~v 284 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK--------------MRIRCPFEKPSNLHFKPQTKTIFV 284 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS--------------EEEECSSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe--------------EEEeCCCCCceeEEECCCCCEEEE
Confidence 33343 6688999999996 5667677899999998753321 122234467899999999997666
Q ss_pred EEeCCC-eEeec
Q psy4578 847 SVSEDN-IMQKP 857 (860)
Q Consensus 847 sgs~Dg-~IrI~ 857 (860)
+...++ +.+++
T Consensus 285 ~~~~~~~l~~~~ 296 (314)
T 1pjx_A 285 TEHENNAVWKFE 296 (314)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCeEEEEe
Confidence 665544 44443
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.89 E-value=6.4e-09 Score=115.02 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=119.1
Q ss_pred EEeeccchhhhhhhhhccccee-eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 604 MYLENKTRAQICQLLDKLRLLI-DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~-~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
++.++....+...+..+...+. .+.|+| +++.|+.++.++.|.+||+.+++. ......+.. |+++|..
T Consensus 62 l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~---~~~~~~~~~------~~~~g~~- 130 (396)
T 3c5m_A 62 YYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE---QVIYTVDEE------WKGYGTW- 130 (396)
T ss_dssp EEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE---EEEEECCTT------EEEEEEE-
T ss_pred EEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc---EEEEecccc------cCCCCCE-
Confidence 4555655555555554444433 488998 788888888888999999987532 222222222 4444433
Q ss_pred EEEEeCCCceeee------cccc---------cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEEE
Q psy4578 683 LATGSADKTQFEV------EEEE---------EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILAT 746 (860)
Q Consensus 683 lasgs~Dg~i~~~------~~~~---------~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~llas 746 (860)
++..+.++....+ .-+. ....++.|.+||+.+++ ...+..+...+..+.|+| ++.. ++.
T Consensus 131 l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~-l~~ 205 (396)
T 3c5m_A 131 VANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDST-VGF 205 (396)
T ss_dssp EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEE-EEE
T ss_pred EEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc----EEeeccCCcccccceECCCCCCE-EEE
Confidence 2221111100000 0000 01234569999998753 223334667889999999 7775 443
Q ss_pred eeCC------CcEEEEeCCCCceeeEEeccC--CCceEEEEEcCCCCCEEEEEECC----CcEEEEECCCCCcccccccc
Q psy4578 747 GSAD------KTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDA 814 (860)
Q Consensus 747 gs~D------g~I~IWDl~~~~~~~~~~~~h--~~~V~~l~fsp~g~~lL~tgs~D----g~I~iWdl~~~~~~~~~~~~ 814 (860)
++.+ ..|.+||+.+... ..+..+ ...+..++|+|+|+.+++++..+ +.|++||+.++...
T Consensus 206 ~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~------ 277 (396)
T 3c5m_A 206 CHEGPHDLVDARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE------ 277 (396)
T ss_dssp EECSCSSSCSCCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE------
T ss_pred EecCCCCCCCceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE------
Confidence 3333 4688999876553 233333 23578899999999744443322 44999998764321
Q ss_pred cCCCCccEEEecCccCceEEEEEcc-CCCeEEEE
Q psy4578 815 EDGPPELLFIHGGHTAKISDFSWNP-NEPWVICS 847 (860)
Q Consensus 815 ~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llas 847 (860)
.+....+ .. +.|+| +|++++++
T Consensus 278 ------~l~~~~~----~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 278 ------EVMVMPP----CS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp ------EEEECCS----EE-EEEECSSSSEEEEE
T ss_pred ------EeeeCCC----CC-CCccCCCCceEEEe
Confidence 1111122 22 88999 99965543
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.89 E-value=4e-08 Score=106.92 Aligned_cols=201 Identities=10% Similarity=0.138 Sum_probs=121.2
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC---------------------------CCcEEEEEcCCCC
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---------------------------DQKLMIWDTRSHN 655 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---------------------------DG~I~IWd~~~~~ 655 (860)
.++.++...++...+..... +.+++|+| +++.|+.++. ...|.+||+.+++
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred eEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 35566655555555555555 99999999 5666665543 2578899998753
Q ss_pred cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC-CCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY-DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL 734 (860)
Q Consensus 656 ~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~-dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl 734 (860)
. +..+.. . .+..+.|+|+| ++++++.++.. .... ...|.++| ++ ....+..+ ..+.++
T Consensus 164 ~---~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~-------~~~~~~~~l~~~d--~~----~~~~l~~~-~~~~~~ 222 (347)
T 2gop_A 164 V---IEEFEK-P-RFSSGIWHRDK--IVVNVPHREII-------PQYFKFWDIYIWE--DG----KEEKMFEK-VSFYAV 222 (347)
T ss_dssp E---EEEEEE-E-TTCEEEEETTE--EEEEEECCCSS-------CCSSCCEEEEEEE--TT----EEEEEEEE-ESEEEE
T ss_pred E---EeeecC-C-CcccccCCCCe--EEEEEeccccc-------ccccccccEEEeC--CC----ceEEeccC-cceeeE
Confidence 2 122323 3 78899999999 56666554310 0000 12244555 32 22333334 445544
Q ss_pred EEcCCCCcEEEEeeCC-------CcEEEEeCCCCceeeEEeccCCCceEE-EEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578 735 SFNPYSEYILATGSAD-------KTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSKIG 806 (860)
Q Consensus 735 ~~sp~g~~llasgs~D-------g~I~IWDl~~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~ 806 (860)
+|+|+++++++..+ +.|.+|| ++.. ......+...+.. +.|+ +| ++++++.++.+++| +.++.
T Consensus 223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS
T ss_pred --CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc
Confidence 99999744444322 4688888 4432 3333456677886 9999 77 68899999999999 87311
Q ss_pred cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
.. ....+.+.|.+++|+| . ++++++.++.
T Consensus 294 --------------~~-~~~~~~~~v~~~~~s~--~-~~~~~~~~~~ 322 (347)
T 2gop_A 294 --------------IK-PIAKGRHWIMGFDVDE--I-VVYLKETATR 322 (347)
T ss_dssp --------------EE-EEECSSSEEEEEEESS--S-EEEEEECSSS
T ss_pred --------------eE-EEecCCCeEEeeeeeC--c-EEEEEcCCCC
Confidence 11 1223467899999999 4 4555555543
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.89 E-value=1e-07 Score=99.70 Aligned_cols=190 Identities=8% Similarity=-0.016 Sum_probs=124.8
Q ss_pred ceeeeEeeccCCcEEE-EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 623 LLIDVAWHLLHESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 623 ~V~~v~~sp~~~~~la-sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
...++++++ ++.+++ +.+.++.|.+|+..+... ......+...+.+++++++|. ++++.. ++.
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~---------- 88 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGT---TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNR---------- 88 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEET-TTE----------
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCccc---ceEeeCCcCCcceeEECCCCC-EEEEcC-CCE----------
Confidence 677899998 567777 546788999999765321 111122335678999999888 566655 666
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f 780 (860)
|.+||..... ...+. .....+.+++++|+|. ++++...++.|.+||..+... ..........+.++++
T Consensus 89 -----i~~~d~~~~~----~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 89 -----VVTLAAGSNN----QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAV 157 (270)
T ss_dssp -----EEEECTTCSC----CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEE
T ss_pred -----EEEEeCCCce----EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEE
Confidence 8889876542 12222 2235789999999997 677777788999998765543 2212223346788999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
+++|+ ++++...++.|.+||....... .....+...+.+++++++|. ++++...++.|.
T Consensus 158 ~~~g~-l~v~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~ 216 (270)
T 1rwi_B 158 DNSGN-VYVTDTDNNRVVKLEAESNNQV--------------VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVV 216 (270)
T ss_dssp CTTCC-EEEEEGGGTEEEEECTTTCCEE--------------ECCCSSCCSEEEEEECTTCC-EEEEETTTSCEE
T ss_pred eCCCC-EEEEECCCCEEEEEecCCCceE--------------eecccCCCCceEEEECCCCC-EEEEECCCCcEE
Confidence 99997 5767767889999998763221 11112235688999999996 666666555443
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.86 E-value=8.5e-08 Score=115.62 Aligned_cols=211 Identities=11% Similarity=0.010 Sum_probs=127.3
Q ss_pred cceeeeEeeccCCcEEE-E----EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 622 RLLIDVAWHLLHESLFG-S----VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~la-s----gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
..+.+++|+| +++.+| + |+.+..|++||+.+++... ...+.. ....+++|+|||+. |+.++.|..- -.
T Consensus 121 ~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~--~~~~~~~wspDg~~-l~~~~~d~~~--~~ 193 (695)
T 2bkl_A 121 VSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEG--GKYATPKWTPDSKG-FYYEWLPTDP--SI 193 (695)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSC--CTTCCCEECTTSSE-EEEEECCCCT--TS
T ss_pred EEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCc--ccccceEEecCCCE-EEEEEecCCC--CC
Confidence 4688999999 566666 3 3334689999999864320 111111 11268999999997 5555554320 00
Q ss_pred ccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-C--cEEEEeCCCCceeeEEeccCC
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-K--TVALWDLRNLKLKLHSFESHK 772 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g--~I~IWDl~~~~~~~~~~~~h~ 772 (860)
..........|++|++.++... ..+.....|...+.++.|+|+|+++++++..+ + .|++||..++. ...+..+.
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~ 271 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGV 271 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECS
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCC
Confidence 0011122445999999876321 12333344566889999999999855444433 2 56777665443 34455566
Q ss_pred CceEEEEEcCCCCCEEEEEE---CCCcEEEEECCCCCcccccccccCCCCccEEEecCc-cCceEEEEEccCCCeEEEEE
Q psy4578 773 DEIFQVQWSPHNETILASSG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-~~~I~~i~~spdg~~Llasg 848 (860)
..+....| ++|. +++++. .++.|.+||+.+.... ........+ ...+.+++|+ + ..++++.
T Consensus 272 ~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~ 336 (695)
T 2bkl_A 272 GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVPEDSSASLLSVSIV-G-GHLSLEY 336 (695)
T ss_dssp SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEECCCSSCEEEEEEEE-T-TEEEEEE
T ss_pred CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEecCCCCCeEEEEEEE-C-CEEEEEE
Confidence 66667767 6777 666655 3588999998764320 001111222 4467888888 4 4578889
Q ss_pred eCCCeEee
Q psy4578 849 SEDNIMQK 856 (860)
Q Consensus 849 s~Dg~IrI 856 (860)
..|+..++
T Consensus 337 ~~dg~~~l 344 (695)
T 2bkl_A 337 LKDATSEV 344 (695)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 88888776
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.83 E-value=3.3e-07 Score=107.45 Aligned_cols=186 Identities=10% Similarity=0.085 Sum_probs=133.3
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT 712 (860)
Q Consensus 633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl 712 (860)
++.++++...+++|.+||..+++ .+..+.. ...+..+.|+|+|++ +.+++.|+. |.+||+
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-g~~p~~v~~SpDGr~-lyv~~~dg~---------------V~viD~ 225 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-GYAVHISRLSASGRY-LFVIGRDGK---------------VNMIDL 225 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCC---EEEEEEC-SSCEEEEEECTTSCE-EEEEETTSE---------------EEEEET
T ss_pred CceEEEEeCCCCeEEEEECCCCe---EEEEEeC-CCCccceEECCCCCE-EEEEcCCCe---------------EEEEEC
Confidence 45567778889999999998853 3444432 345679999999997 555667777 999999
Q ss_pred C--CCCCCCCeeeecCCCCCeEEEEEc----CCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----------C-CCce
Q psy4578 713 R--SHNVSKPSHTVDAHTAEVNCLSFN----PYSEYILATGSADKTVALWDLRNLKLKLHSFES----------H-KDEI 775 (860)
Q Consensus 713 ~--~~~~~~~~~~~~~h~~~I~sl~~s----p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----------h-~~~V 775 (860)
. +. +.+..+.. ......++|+ |+|++++++...+++|.++|..+.+. +..+.. | ...+
T Consensus 226 ~~~t~---~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 226 WMKEP---TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp TSSSC---CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCE
T ss_pred CCCCC---cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCce
Confidence 5 44 44455543 3346789999 69998777777789999999988776 444331 1 1267
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
..+..+++++.++++...+|.|.++|........ +.. ........++.|+|+|+++++++..++.|.
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~------------v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLK------------TTE-ISAERFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE------------EEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCccce------------eee-eeccccccCceECCCCCEEEEEeCCCCeEE
Confidence 8899999988767777788999999987633110 111 122345678899999999888887666665
Q ss_pred e
Q psy4578 856 K 856 (860)
Q Consensus 856 I 856 (860)
+
T Consensus 368 V 368 (567)
T 1qks_A 368 V 368 (567)
T ss_dssp E
T ss_pred E
Confidence 4
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.81 E-value=1.5e-07 Score=102.61 Aligned_cols=211 Identities=11% Similarity=0.127 Sum_probs=135.0
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-----CCeeEEEEccC
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-----AEVNCLSFNPY 678 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-----~~V~~l~~sp~ 678 (860)
+..++....++...+........+++++ ++.++++...++.|.+||..+++. ...+.... .....+++ +
T Consensus 66 v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~~~~~~~p~~i~~--~ 139 (328)
T 3dsm_A 66 IFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEI---TGYIECPDMDMESGSTEQMVQ--Y 139 (328)
T ss_dssp EEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEE---EEEEECTTCCTTTCBCCCEEE--E
T ss_pred EEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeE---EEEEEcCCccccCCCcceEEE--E
Confidence 4444555555544444556788999987 456666555889999999987532 22222211 14556777 4
Q ss_pred CCeEEEEEe-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-------
Q psy4578 679 SEYILATGS-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD------- 750 (860)
Q Consensus 679 g~~llasgs-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D------- 750 (860)
+..++++.. .++. |.+||..++ +....+.. ......++++|+|+ +++++..+
T Consensus 140 ~~~lyv~~~~~~~~---------------v~viD~~t~---~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 140 GKYVYVNCWSYQNR---------------ILKIDTETD---KVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYG 199 (328)
T ss_dssp TTEEEEEECTTCCE---------------EEEEETTTT---EEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSC
T ss_pred CCEEEEEcCCCCCE---------------EEEEECCCC---eEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccc
Confidence 555566654 3666 999999876 33333332 23457889999998 46666554
Q ss_pred ---CcEEEEeCCCCceeeEEeccC-CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578 751 ---KTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 826 (860)
Q Consensus 751 ---g~I~IWDl~~~~~~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~ 826 (860)
+.|.+||..+.+. ...+... ......++|+|+++. ++.+.. .|.+||..+....... . ..
T Consensus 200 ~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~~---------~---~~ 263 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVRP---------F---LE 263 (328)
T ss_dssp BCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSSC---------S---BC
T ss_pred cCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeeee---------e---ec
Confidence 7899999998875 4444322 346899999999986 444433 8999999875532110 0 01
Q ss_pred CccCceEEEEEccCCCeEEEEE----eCCCeEee
Q psy4578 827 GHTAKISDFSWNPNEPWVICSV----SEDNIMQK 856 (860)
Q Consensus 827 ~h~~~I~~i~~spdg~~Llasg----s~Dg~IrI 856 (860)
.......+++++|++..++++. ..++.|.+
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 1145688999999666678887 55666553
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.79 E-value=1.3e-06 Score=92.09 Aligned_cols=196 Identities=3% Similarity=-0.012 Sum_probs=131.3
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
...+.++++.+ ++.++++...++.|.+||. ++.. . ..........+.++++.++|. ++++...++.
T Consensus 98 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~--------- 163 (299)
T 2z2n_A 98 DSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-R-EYELPNKGSYPSFITLGSDNA-LWFTENQNNA--------- 163 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred CCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-E-EecCCCCCCCCceEEEcCCCC-EEEEeCCCCE---------
Confidence 34688999997 6778787777889999998 4322 1 112223446789999999886 5666655565
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f 780 (860)
|..||. ++.. . ......+...+.+++++++|. ++++...++.|.+||. ++.........+...+.++++
T Consensus 164 ------i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 164 ------IGRITE-SGDI-T-EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp ------EEEECT-TCCE-E-EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred ------EEEEcC-CCcE-E-EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 788887 4321 1 111223445688999999987 5666666889999999 555322223345577899999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF 858 (860)
Q Consensus 781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f 858 (860)
+++|. ++++...++.|..||... . .. ......+...+.++++ ++|. ++++.+.++++++.-
T Consensus 233 ~~~g~-l~v~~~~~~~i~~~d~~g-~-~~------------~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 233 GAGID-LWFTEWGANKIGRLTSNN-I-IE------------EYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTL 293 (299)
T ss_dssp CSTTC-EEEEETTTTEEEEEETTT-E-EE------------EEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEE
T ss_pred CCCCC-EEEeccCCceEEEECCCC-c-eE------------EEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEc
Confidence 99997 455555778999999732 1 10 1112234567899999 8888 566666788888753
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.77 E-value=1.6e-07 Score=104.35 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=102.0
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
...+ |+.++| ++.+|+++ .+|.|++||+.+.. .......|...+.++.+.+. . +++++.||.
T Consensus 86 ~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~------- 147 (388)
T 1xip_A 86 EIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--T-LVILNSVND------- 147 (388)
T ss_dssp ECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSSTT---CEEEEEECSSCEEEEEECSS--E-EEEEETTSE-------
T ss_pred eCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchhhh---ccCccceeecceeeEEecCC--C-EEEEECCCC-------
Confidence 3445 999999 57888888 88999999998743 23344556777888887754 3 788889998
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEe------c--
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSF------E-- 769 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~------~-- 769 (860)
+.+||+.++.. . . +...|+|++|||+| ++.|..||++++|+..+.... ...+ .
T Consensus 148 --------L~v~dl~~~~~---~-~---~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~ 209 (388)
T 1xip_A 148 --------LSALDLRTKST---K-Q---LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL 209 (388)
T ss_dssp --------EEEEETTTCCE---E-E---EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS
T ss_pred --------EEEEEccCCcc---c-c---ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccc
Confidence 99999987632 1 1 45689999999999 467889999999998876631 2233 2
Q ss_pred -cCCCceEEEEEcCCCCCEEE
Q psy4578 770 -SHKDEIFQVQWSPHNETILA 789 (860)
Q Consensus 770 -~h~~~V~~l~fsp~g~~lL~ 789 (860)
+|...|.++.|.+++.++++
T Consensus 210 ~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 210 PVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CTTTSEEEEEEESSSSEEEEE
T ss_pred cCCCeeEEEEEEecCCeEEEE
Confidence 37889999999999986443
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.73 E-value=2.4e-06 Score=90.10 Aligned_cols=193 Identities=8% Similarity=-0.004 Sum_probs=126.7
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
...+.++++.+ ++.++++...++.|.+||.. +.. . ......+...+.+++++++|. ++++...++.
T Consensus 14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~--------- 79 (299)
T 2z2n_A 14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKI-T-EYPLPTPDAKVMCLTISSDGE-VWFTENAANK--------- 79 (299)
T ss_dssp SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCE-E-EEECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCe-E-EecCCcccCceeeEEECCCCC-EEEeCCCCCe---------
Confidence 45788999998 67777776668899999987 432 1 111223456789999999887 5666655666
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f 780 (860)
|..||.. +. ............+.+++++|+|. ++++...++.|..||. ++.........+...+.++++
T Consensus 80 ------i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 80 ------IGRITKK-GI--IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp ------EEEECTT-SC--EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred ------EEEECCC-Cc--EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 7777764 21 11111122455789999999987 5777667889999998 444322233334567899999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
+++|. ++++...++.|..||. ++... ..........+.+++++++|. ++++...++.|
T Consensus 149 ~~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i 206 (299)
T 2z2n_A 149 GSDNA-LWFTENQNNAIGRITE-SGDIT-------------EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKI 206 (299)
T ss_dssp CTTSC-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred cCCCC-EEEEeCCCCEEEEEcC-CCcEE-------------EeeCCCCCCcceeEEECCCCC-EEEEccCCceE
Confidence 99996 4666656789999997 42211 011122345678999999988 55555444433
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.72 E-value=1.2e-06 Score=98.70 Aligned_cols=227 Identities=7% Similarity=0.001 Sum_probs=133.3
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccC-CCCCeeEEEEccCCC
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSE 680 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~ 680 (860)
+..++.....+..+........ ++|++ +++.++++..++ .|.+|+...+.....+..... ....+.+++++|++.
T Consensus 154 I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g 231 (409)
T 3hrp_A 154 VRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE 231 (409)
T ss_dssp EEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS
T ss_pred EEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC
Confidence 3344444444443333333344 99998 566777777655 788888765422111111112 456778999999666
Q ss_pred eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee--ecCCCCCe--EEEEEcCCCCcEEEEeeCCCcEEEE
Q psy4578 681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT--VDAHTAEV--NCLSFNPYSEYILATGSADKTVALW 756 (860)
Q Consensus 681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~--~~~h~~~I--~sl~~sp~g~~llasgs~Dg~I~IW 756 (860)
.+++ +..++. |..||..++.. ..+.. ..++...- ..++|+|++..++++...++.|+.|
T Consensus 232 ~lyv-~d~~~~---------------I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~ 294 (409)
T 3hrp_A 232 WLYF-VDSNKN---------------FGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI 294 (409)
T ss_dssp EEEE-ECTTCE---------------EEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEE-EECCCc---------------EEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence 5555 555666 88888876421 11100 11222222 3899999766678887888999999
Q ss_pred eCCCCceeeEEeccCC---------------CceEEEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCc
Q psy4578 757 DLRNLKLKLHSFESHK---------------DEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPE 820 (860)
Q Consensus 757 Dl~~~~~~~~~~~~h~---------------~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~ 820 (860)
|..... ..+.++. .....++++|+|. ++++-+ .+++|+.|++..+... .+.........
T Consensus 295 ~~~g~~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~ 369 (409)
T 3hrp_A 295 TPDGEC---EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQ 369 (409)
T ss_dssp CTTCCE---EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSC
T ss_pred ecCCCE---EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCc
Confidence 987542 2232222 4578999999997 677777 7899999997653321 11100000000
Q ss_pred cE-EEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 821 LL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 821 ~i-~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.- ......-....+++++++|. |+++...++.|+
T Consensus 370 ~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir 404 (409)
T 3hrp_A 370 IDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIR 404 (409)
T ss_dssp CCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEE
T ss_pred CCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEE
Confidence 00 00001124588999999976 777888877776
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.71 E-value=5.5e-07 Score=108.50 Aligned_cols=213 Identities=6% Similarity=-0.086 Sum_probs=133.2
Q ss_pred EEEEeeccchhhhhhhhhcccce--eeeEeeccCCcEEEEEeCCCc-------------EEEEEcCCCCcc-cCeeeccC
Q psy4578 602 EVMYLENKTRAQICQLLDKLRLL--IDVAWHLLHESLFGSVADDQK-------------LMIWDTRSHNVS-KPSHTVDA 665 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~~~~~V--~~v~~sp~~~~~lasgs~DG~-------------I~IWd~~~~~~~-~~~~~~~~ 665 (860)
..+++++..+++... ..+...+ .+++|+| ++..|+.++.|+. |++|++.++... ..+.....
T Consensus 147 ~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK-VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp CEEEEEETTTCCBCS-SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred EEEEEEECCCCCCcC-CcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 456667766665431 1122223 7899999 6777777777765 999999875321 12333344
Q ss_pred CCCCeeEEEEccCCCeEEEEEeCC-CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578 666 HTAEVNCLSFNPYSEYILATGSAD-KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744 (860)
Q Consensus 666 h~~~V~~l~~sp~g~~llasgs~D-g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll 744 (860)
+...+.++.|+|+|++++++...+ +. ..|.+||..++ ....+..+...+....| ++|. ++
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~~~~~~-------------~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~ 285 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYILRGWSE-------------NDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FY 285 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEEETTTE-------------EEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EE
T ss_pred CCEEEEEEEECCCCCEEEEEEeCCCCc-------------eEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EE
Confidence 556889999999999866655443 22 22666655433 23344455566666667 6676 67
Q ss_pred EEee---CCCcEEEEeCCCCce--eeEEeccC-CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 745 ATGS---ADKTVALWDLRNLKL--KLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 745 asgs---~Dg~I~IWDl~~~~~--~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
+++. .++.|.+||+.++.. .......+ ...+.+++|+ ++ .+++++..|+..++|.+....
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g------------ 351 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG------------ 351 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC------------
T ss_pred EEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC------------
Confidence 6665 358899999987642 12223333 4568888888 44 578899999998888765311
Q ss_pred CccEEEecCc-cCceEEEEEccCCCeEEEEEeC
Q psy4578 819 PELLFIHGGH-TAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 819 ~~~i~~~~~h-~~~I~~i~~spdg~~Llasgs~ 850 (860)
.....+..+ .+.|..++++|++..++++.+.
T Consensus 352 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 352 -KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp -CEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred -CeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 111222222 4567778888888776655544
No 199
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.69 E-value=1.9e-06 Score=93.51 Aligned_cols=196 Identities=10% Similarity=0.010 Sum_probs=121.3
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-C-CCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
...+.++.|++ ++++++++ .+ .|.+||..++... .+.... . ....+.+++++|+|+. +++...+..
T Consensus 89 ~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~------- 156 (326)
T 2ghs_A 89 PFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKA------- 156 (326)
T ss_dssp SSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTC-------
T ss_pred CCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcC-------
Confidence 45789999998 56666644 44 4999998775421 111111 1 1245889999999984 444332110
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--CC-ce----eeEEeccC
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NL-KL----KLHSFESH 771 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~~-~~----~~~~~~~h 771 (860)
....+.|..++ ++ .+..+..+......++|+|+++.++++.+.++.|.+||+. ++ .. ....+...
T Consensus 157 --~~~~~~l~~~~--~g----~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~ 228 (326)
T 2ghs_A 157 --ETGAGSIYHVA--KG----KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI 228 (326)
T ss_dssp --CTTCEEEEEEE--TT----EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred --CCCceEEEEEe--CC----cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC
Confidence 00112255555 22 1222222334567899999998766676778899999986 44 21 12223334
Q ss_pred CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEEEEEeC
Q psy4578 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVICSVSE 850 (860)
Q Consensus 772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Llasgs~ 850 (860)
......++++++|. ++++...++.|..||... + .+.....+...+++++|+ +++..|+++...
T Consensus 229 ~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g-~--------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 229 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG-N--------------HIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-C--------------EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC-C--------------EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 45678899999996 465655678899998732 2 222333345579999998 898888777766
Q ss_pred CC
Q psy4578 851 DN 852 (860)
Q Consensus 851 Dg 852 (860)
++
T Consensus 293 ~~ 294 (326)
T 2ghs_A 293 EH 294 (326)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.65 E-value=4.2e-07 Score=96.54 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=116.6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT 712 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl 712 (860)
++++++++.|+.|.+||.+++ +.+..+..+. ..+.++.+.|+|+ ++++ .++. |..||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~---------------V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKG---------------AKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSE---------------EEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCC---------------EEEECC
Confidence 688999999999999999885 4455555554 4789999999998 4553 3454 788887
Q ss_pred CCCCCCCCeeeecCC-CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEec------cCCCceEEEEEcCCC
Q psy4578 713 RSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFE------SHKDEIFQVQWSPHN 784 (860)
Q Consensus 713 ~~~~~~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~------~h~~~V~~l~fsp~g 784 (860)
++ +.+..+..+ ...+.++.+.|+|.. +++.+. ++.|..+|.. ++. +..+. .+......+++.++|
T Consensus 64 -~G---~~~W~~~~~~~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 64 -DG---RELWNIAAPAGCEMQTARILPDGNA-LVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp -TS---CEEEEEECCTTCEEEEEEECTTSCE-EEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred -CC---CEEEEEcCCCCccccccEECCCCCE-EEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCC
Confidence 55 455555543 346889999999995 666665 7788888864 433 33332 122244556788999
Q ss_pred CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
.. +++...++.|..||.. ++....... . ..+.++...++|.. +++++.++.
T Consensus 137 ~~-lv~~~~~~~v~~~d~~-G~~~w~~~~--------------~-~~~~~~~~~~~g~~-~v~~~~~~~ 187 (276)
T 3no2_A 137 NY-LVPLFATSEVREIAPN-GQLLNSVKL--------------S-GTPFSSAFLDNGDC-LVACGDAHC 187 (276)
T ss_dssp CE-EEEETTTTEEEEECTT-SCEEEEEEC--------------S-SCCCEEEECTTSCE-EEECBTTSE
T ss_pred CE-EEEecCCCEEEEECCC-CCEEEEEEC--------------C-CCccceeEcCCCCE-EEEeCCCCe
Confidence 84 7888899999999987 554433221 1 23445566677773 445554443
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.65 E-value=1.9e-06 Score=93.75 Aligned_cols=183 Identities=9% Similarity=0.027 Sum_probs=122.4
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN 702 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~ 702 (860)
...++.+. ++.++++...++.|.+||..+++ .+..+. .......+++++++ .++++...++.
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~---~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~----------- 106 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFK---EVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYR----------- 106 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCC---EEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSE-----------
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcccE---EEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCe-----------
Confidence 35677775 56777777788999999999854 344443 34678899999888 56666656777
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCC-----CCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHT-----AEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIF 776 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~-----~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 776 (860)
|.+||..+. +....+.... .....+++ ++..++++.. .++.|.+||..+++. ...+.. .....
T Consensus 107 ----v~~iD~~t~---~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~ 175 (328)
T 3dsm_A 107 ----IFIINPKTY---EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPT 175 (328)
T ss_dssp ----EEEEETTTT---EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBC
T ss_pred ----EEEEECCCC---eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCcc
Confidence 999998876 2222332211 14556777 3454566654 489999999998875 444443 33456
Q ss_pred EEEEcCCCCCEEEEEECC----------CcEEEEECCCCCcccccccccCCCCccEEEec-CccCceEEEEEccCCCeEE
Q psy4578 777 QVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVI 845 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~D----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~-~h~~~I~~i~~spdg~~Ll 845 (860)
.++++|+|+ +++++..+ +.|.+||..+.+.. .... ........++|+|++++++
T Consensus 176 ~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--------------~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 176 SLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--------------KQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp CCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--------------EEEECCTTCCCEEEEECTTSCEEE
T ss_pred ceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEE--------------EEEecCCCCCceeEEEecCCCEEE
Confidence 789999997 45565544 78999998874322 1111 1123578999999999776
Q ss_pred EEEe
Q psy4578 846 CSVS 849 (860)
Q Consensus 846 asgs 849 (860)
++.+
T Consensus 241 v~~~ 244 (328)
T 3dsm_A 241 WINN 244 (328)
T ss_dssp EESS
T ss_pred EEcc
Confidence 6543
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.64 E-value=1.9e-06 Score=92.07 Aligned_cols=197 Identities=13% Similarity=0.149 Sum_probs=122.7
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY 703 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~ 703 (860)
.-+..|++.++.++++...++.|..||..++.. ..+ .....+.+++++++|+ ++++ ..+ .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~~~~i~~~~dG~-l~v~-~~~-~------------ 74 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRV-TMDAPVSSVALRQSGG-YVAT-IGT-K------------ 74 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEE-ECSSCEEEEEEBTTSS-EEEE-ETT-E------------
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEE-eCCCceEEEEECCCCC-EEEE-ECC-e------------
Confidence 347889987778888888899999999987432 222 2356799999999998 3444 333 3
Q ss_pred CCcEEEEeCCCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCC---------CcEEEEeCCCCceeeEEeccCC
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSAD---------KTVALWDLRNLKLKLHSFESHK 772 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~D---------g~I~IWDl~~~~~~~~~~~~h~ 772 (860)
|.+||..++.. ..+..... ....++.++++|+|. ++++...+ ..-.+|.+..... ......+.
T Consensus 75 ---l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~ 148 (297)
T 3g4e_A 75 ---FCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQV 148 (297)
T ss_dssp ---EEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEE
T ss_pred ---EEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeecc
Confidence 88888876521 11111111 123478899999998 45543221 2334554443222 22233334
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECC--CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLS--KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~--~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
...+.++|+|+++.++++.+.++.|..|++. ++... ..+.......+.+...+++++++|. +.++...
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~ 218 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN 218 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC
Confidence 5678999999998766777778999999974 22110 0122233333446678899999997 5656555
Q ss_pred CC-eEee
Q psy4578 851 DN-IMQK 856 (860)
Q Consensus 851 Dg-~IrI 856 (860)
++ +.++
T Consensus 219 ~~~v~~~ 225 (297)
T 3g4e_A 219 GGRVIRL 225 (297)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 55 4444
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.63 E-value=1.9e-06 Score=91.42 Aligned_cols=202 Identities=11% Similarity=0.009 Sum_probs=126.7
Q ss_pred EEEEeeccchhhhhhhhhcc--cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCeeEEEEccC
Q psy4578 602 EVMYLENKTRAQICQLLDKL--RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPY 678 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~~~--~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~ 678 (860)
..++.++...+++...+... ..+.++.+.| ++++++ +.++.|..||. ++ +.+..+..+ ...+.++.+.++
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G---~~~W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DG---RELWNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS---CEEEEEECCTTCEEEEEEECTT
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC---CEEEEEcCCCCccccccEECCC
Confidence 34555666455544444333 3688999998 678877 45778999998 54 344455443 357889999999
Q ss_pred CCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578 679 SEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGSADK 751 (860)
Q Consensus 679 g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~g~~llasgs~Dg 751 (860)
|+. +++.+. ++. +..+|. ++ +.+..+. .+......++..++|. ++++.+.++
T Consensus 88 G~~-lv~~~~~~~~---------------v~~vd~-~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~ 146 (276)
T 3no2_A 88 GNA-LVAWCGHPST---------------ILEVNM-KG---EVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATS 146 (276)
T ss_dssp SCE-EEEEESTTEE---------------EEEECT-TS---CEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTT
T ss_pred CCE-EEEecCCCCE---------------EEEEeC-CC---CEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCC
Confidence 995 555554 555 333333 11 1111111 1222345567899998 488888999
Q ss_pred cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578 752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831 (860)
Q Consensus 752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~ 831 (860)
.|..||.. ++. +..+... ....++.+.++|. ++++++.+++|..+|..+++............ .....
T Consensus 147 ~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--------~~l~~ 214 (276)
T 3no2_A 147 EVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEG--------VQLFF 214 (276)
T ss_dssp EEEEECTT-SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--------CCCSE
T ss_pred EEEEECCC-CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--------ccccc
Confidence 99999998 665 5556543 4556778889987 47778888899999988766544332111000 01123
Q ss_pred eEEEEEccCCCe
Q psy4578 832 ISDFSWNPNEPW 843 (860)
Q Consensus 832 I~~i~~spdg~~ 843 (860)
+..++..++|..
T Consensus 215 ~~~~~~~~~G~i 226 (276)
T 3no2_A 215 VAQLFPLQNGGL 226 (276)
T ss_dssp EEEEEECTTSCE
T ss_pred cccceEcCCCCE
Confidence 666777777774
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.62 E-value=9.9e-07 Score=94.16 Aligned_cols=203 Identities=6% Similarity=0.035 Sum_probs=123.2
Q ss_pred ccceeeeEeeccCCcEEEE-------EeCCCcEEEEEcCCCCcccCeee--ccCCCCCeeEEEEccC-CCeEEEEEeCCC
Q psy4578 621 LRLLIDVAWHLLHESLFGS-------VADDQKLMIWDTRSHNVSKPSHT--VDAHTAEVNCLSFNPY-SEYILATGSADK 690 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~las-------gs~DG~I~IWd~~~~~~~~~~~~--~~~h~~~V~~l~~sp~-g~~llasgs~Dg 690 (860)
.....+++|++ ++.++++ +..++.|.+||..+++.. .... ..++...+.+++++++ |. +++++..+
T Consensus 17 ~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~- 92 (314)
T 1pjx_A 17 IPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL- 92 (314)
T ss_dssp CTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEETTT-
T ss_pred CCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEECCC-
Confidence 34567899996 6777777 577889999998765321 1110 0124467899999998 65 45555433
Q ss_pred ceeeecccccccCCCcEEEEeCCCCCCCCCe-eee-c-CCCCCeEEEEEcCCCCcEEEEeeCC---------------Cc
Q psy4578 691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPS-HTV-D-AHTAEVNCLSFNPYSEYILATGSAD---------------KT 752 (860)
Q Consensus 691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~-~~~-~-~h~~~I~sl~~sp~g~~llasgs~D---------------g~ 752 (860)
. |.+||.. ++. ..+ ... . .....+.+++++++|. ++++...+ +.
T Consensus 93 ~---------------l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 93 G---------------LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp E---------------EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred C---------------EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCe
Confidence 3 7788876 421 111 110 1 1124578999999997 46665544 56
Q ss_pred EEEEeCCCCceeeEEeccCCCceEEEEEc----CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc
Q psy4578 753 VALWDLRNLKLKLHSFESHKDEIFQVQWS----PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 828 (860)
Q Consensus 753 I~IWDl~~~~~~~~~~~~h~~~V~~l~fs----p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h 828 (860)
|..||.. +.. ..+..+......++|+ |+|+.++++...++.|.+||......... ........++
T Consensus 155 l~~~~~~-g~~--~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~--------~~~~~~~~~~ 223 (314)
T 1pjx_A 155 IYCFTTD-GQM--IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--------KKVWGHIPGT 223 (314)
T ss_dssp EEEECTT-SCE--EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--------EEEEEECCCC
T ss_pred EEEECCC-CCE--EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--------ceEEEECCCC
Confidence 7777765 332 2222334456889999 99976566666789999999762111000 0122233334
Q ss_pred c-CceEEEEEccCCCeEEEEEeC-CCeEeec
Q psy4578 829 T-AKISDFSWNPNEPWVICSVSE-DNIMQKP 857 (860)
Q Consensus 829 ~-~~I~~i~~spdg~~Llasgs~-Dg~IrI~ 857 (860)
. ..+.+++++++|. ++++... +++.+++
T Consensus 224 ~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-LLVANWGSSHIEVFG 253 (314)
T ss_dssp SSCEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred CCCCCCceEECCCCC-EEEEEcCCCEEEEEc
Confidence 3 5678899999998 4555544 4454443
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.61 E-value=1.1e-06 Score=106.84 Aligned_cols=211 Identities=10% Similarity=0.046 Sum_probs=123.1
Q ss_pred cceeeeEeeccCCcEEEEEeC-CC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 622 RLLIDVAWHLLHESLFGSVAD-DQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~-DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
..+.+++|+| +++.++.++. +| .|++||+.+++. +.. ..+...+..++|+|| +.++ .++.++... -.
T Consensus 163 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~---~~~-~~~~~~~~~~~wspD-~~l~-~~~~~~~~~-~~ 234 (741)
T 1yr2_A 163 TALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKP---LAD-ELKWVKFSGLAWLGN-DALL-YSRFAEPKE-GQ 234 (741)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCE---EEE-EEEEEESCCCEESTT-SEEE-EEECCCC-----
T ss_pred EEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCC---CCc-cCCCceeccEEEECC-CEEE-EEEecCccc-cc
Confidence 3688999999 5666665543 34 599999998643 211 111222367899999 8644 444444200 00
Q ss_pred ccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCCCcee-eEEecc
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSA----DKTVALWDLRNLKLK-LHSFES 770 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~~~~~-~~~~~~ 770 (860)
..........|++|++.++... ..+.....+...+.++.|+|+|+++++++.. ...|++||+.++... ...+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 0011122445889998765321 1222223334468899999999975555432 347999999877322 344555
Q ss_pred CCCceEEEEEcCCCCCEEEEEEC----CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578 771 HKDEIFQVQWSPHNETILASSGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846 (860)
Q Consensus 771 h~~~V~~l~fsp~g~~lL~tgs~----Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla 846 (860)
+...+.... +|+|+.++ ..+. ++.|.+||+.+.. . ........+...+.+++|+ +..+++
T Consensus 315 ~~~~~~~~~-~~dg~~l~-~~s~~~~~~~~l~~~d~~~~~--~----------~~~~l~~~~~~~l~~~~~~--~~~lv~ 378 (741)
T 1yr2_A 315 DLKAQWDFV-DGVGDQLW-FVSGDGAPLKKIVRVDLSGST--P----------RFDTVVPESKDNLESVGIA--GNRLFA 378 (741)
T ss_dssp SSSSCEEEE-EEETTEEE-EEECTTCTTCEEEEEECSSSS--C----------EEEEEECCCSSEEEEEEEE--BTEEEE
T ss_pred CCCceEEEE-eccCCEEE-EEECCCCCCCEEEEEeCCCCc--c----------ccEEEecCCCCeEEEEEEE--CCEEEE
Confidence 555555554 48888744 4443 3569999987632 0 1111223344456677777 445788
Q ss_pred EEeCCCeEee
Q psy4578 847 SVSEDNIMQK 856 (860)
Q Consensus 847 sgs~Dg~IrI 856 (860)
+...|+..+|
T Consensus 379 ~~~~dg~~~l 388 (741)
T 1yr2_A 379 SYIHDAKSQV 388 (741)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 8888887665
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.59 E-value=7.4e-06 Score=86.33 Aligned_cols=195 Identities=8% Similarity=-0.008 Sum_probs=128.0
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
...+.++++.+ ++.++++...++.|.+||.. +... . .........+.++++.++|. ++++...++.
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~-~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~--------- 84 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK-E-FEVPTPDAKVMCLIVSSLGD-IWFTENGANK--------- 84 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE-E-EECCCCCCcceeEEECCCCC-EEEEecCCCe---------
Confidence 45778999998 67777777778999999987 4321 1 12223346789999999887 5666555565
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f 780 (860)
|..||.. +.. ...........+.++++.++|. ++++...++.|..||.. +.............+.++++
T Consensus 85 ------v~~~d~~-g~~--~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 85 ------IGKLSKK-GGF--TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp ------EEEECTT-SCE--EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred ------EEEECCC-CCe--EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 7788766 321 1112222346789999999887 57676668899999987 44322223334567899999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC-eEee
Q psy4578 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN-IMQK 856 (860)
Q Consensus 781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg-~IrI 856 (860)
+++|+ ++++...++.|..||. .+... ......+...+.+++++++|. ++++...++ +.++
T Consensus 154 d~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 154 GSDNA-LWFTENQNNSIGRITN-TGKLE-------------EYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRI 214 (300)
T ss_dssp CTTSS-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEE
T ss_pred CCCCC-EEEEecCCCeEEEECC-CCcEE-------------EeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEE
Confidence 99997 5666656788999987 32211 111223345688999999987 555555444 4433
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.59 E-value=4.6e-06 Score=90.51 Aligned_cols=193 Identities=12% Similarity=-0.010 Sum_probs=118.7
Q ss_pred eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578 625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD 704 (860)
Q Consensus 625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d 704 (860)
.+..|+|+++.++++...++.|..||..++.. ..+ .....+.+++|+++|+. +++ +.++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~v~~i~~~~dg~l-~v~-~~~g-------------- 110 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRK----TVH-ALPFMGSALAKISDSKQ-LIA-SDDG-------------- 110 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEE-ECSSCEEEEEEEETTEE-EEE-ETTE--------------
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----EEE-ECCCcceEEEEeCCCeE-EEE-ECCC--------------
Confidence 46789986677888888889999999986422 222 13467999999999874 443 3443
Q ss_pred CcEEEEeCCCCCCCCCeeeec-C-CCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578 705 QKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLHSFESHKDEIF 776 (860)
Q Consensus 705 g~I~iwDl~~~~~~~~~~~~~-~-h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 776 (860)
|.+||..++.. ..+.... + ....+.+++++|+|.. +++... .+.|..+| ++.. ..+..+.....
T Consensus 111 --l~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~~~~~~ 182 (326)
T 2ghs_A 111 --LFLRDTATGVL-TLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGKV--TKLFADISIPN 182 (326)
T ss_dssp --EEEEETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTEE--EEEEEEESSEE
T ss_pred --EEEEECCCCcE-EEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCcE--EEeeCCCcccC
Confidence 78888876531 1111111 1 1235889999999984 554432 24566666 3332 23333334578
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECC--CC-CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCC
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLS--KI-GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDN 852 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~--~~-~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg 852 (860)
.++|+|+|+.++++.+.++.|.+||+. ++ ... ..............+.+++++++|.. .++.. .++
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~~~~~~~~p~gi~~d~~G~l-wva~~~~~~ 252 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFIDSTGIKGGMDGSVCDAEGHI-WNARWGEGA 252 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEECTTSSSEEEEEEECTTSCE-EEEEETTTE
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEECCCCCCCCCeeEECCCCCE-EEEEeCCCE
Confidence 899999998766666678899999986 32 110 01122222333455678999999984 44443 344
Q ss_pred eEee
Q psy4578 853 IMQK 856 (860)
Q Consensus 853 ~IrI 856 (860)
+.++
T Consensus 253 v~~~ 256 (326)
T 2ghs_A 253 VDRY 256 (326)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.58 E-value=2.6e-06 Score=95.88 Aligned_cols=209 Identities=6% Similarity=0.034 Sum_probs=126.1
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
......++|++ +++++++...++.|++||..++.. ...... ..... ++|+++++. ++++..++.
T Consensus 130 ~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~---~~~~~~-~~~~~-ia~~~~g~~-l~~~d~~~~--------- 193 (409)
T 3hrp_A 130 FKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKV---TTVHPG-FKGGK-PAVTKDKQR-VYSIGWEGT--------- 193 (409)
T ss_dssp CCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEE---EEEEET-CCBCB-CEECTTSSE-EEEEBSSTT---------
T ss_pred cCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEE---EEeecc-CCCCc-eeEecCCCc-EEEEecCCC---------
Confidence 45678999997 677888877789999999986432 122222 23334 999999996 555555441
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeee----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE---eccCCC
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS---FESHKD 773 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~---~~~h~~ 773 (860)
..|.+|+..... ....+ ......+.+++++|++..+++ +..++.|+.||..+....... ..++..
T Consensus 194 ----~~I~~~d~~~~~---~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 194 ----HTVYVYMKASGW---APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp ----CEEEEEEGGGTT---CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred ----ceEEEEEcCCCc---eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 027777776542 12222 214466788999995554455 667889999999877642211 122222
Q ss_pred ce--EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE-EEecCccCceEEEEEccCCCeEEEEEe-
Q psy4578 774 EI--FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVS- 849 (860)
Q Consensus 774 ~V--~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i-~~~~~h~~~I~~i~~spdg~~Llasgs- 849 (860)
.- ..++|+|++..++++-..+++|+.|+.... ..............- ......-....+++++++|. ++++.+
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence 22 389999975566777778899999987642 111100000000000 00001123478999999999 677777
Q ss_pred CCCeEee
Q psy4578 850 EDNIMQK 856 (860)
Q Consensus 850 ~Dg~IrI 856 (860)
.++.|+.
T Consensus 343 ~~~~I~~ 349 (409)
T 3hrp_A 343 KGYCLRK 349 (409)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 6666653
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.56 E-value=9.1e-07 Score=106.61 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=127.8
Q ss_pred ccceeeeEeeccCCcEEE-EEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 621 LRLLIDVAWHLLHESLFG-SVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~la-sgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
...+.+++|+| +++++| +.+.. ..|++||+.+++... ..+. ......++|+ ||+.++.+. .+.. .-
T Consensus 128 ~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--~~~~--~~k~~~~~Ws-Dg~~l~y~~-~~~~--~~ 198 (693)
T 3iuj_A 128 TTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLE--TPLK--DVKFSGISWL-GNEGFFYSS-YDKP--DG 198 (693)
T ss_dssp CCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEE--EEEE--EEESCCCEEE-TTTEEEEEE-SSCC--C-
T ss_pred cEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCc--cccC--CceeccEEEe-CCCEEEEEE-ecCc--cc
Confidence 34688899999 566555 33333 469999999864311 1111 1113578999 999755544 4321 00
Q ss_pred cccccccCCCcEEEEeCCCCCCC-CCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCC---CcEEEEeCCCCceeeEEecc
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVS-KPSHTVDA-HTAEVNCLSFNPYSEYILATGSAD---KTVALWDLRNLKLKLHSFES 770 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~D---g~I~IWDl~~~~~~~~~~~~ 770 (860)
..........+|++|++.++... ..+..... |...+.++.|+|+|++++++.+.+ +.|++||+.++......+..
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 00001122345899998875321 12222233 445678899999999876666533 57999999877533556666
Q ss_pred CCCceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578 771 HKDEIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847 (860)
Q Consensus 771 h~~~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas 847 (860)
+....... |+++|..+++.+..+ +.|..||+.+.... ....+..|...+. .|++++.+|+++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------------HWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------ccEEEecCCCCEE--EEEEECCEEEEE
Confidence 66666555 677777766666554 67999998874321 0112233444444 899999988888
Q ss_pred EeCCCeEe
Q psy4578 848 VSEDNIMQ 855 (860)
Q Consensus 848 gs~Dg~Ir 855 (860)
...++.-+
T Consensus 344 ~~~~g~~~ 351 (693)
T 3iuj_A 344 YMVDATAR 351 (693)
T ss_dssp EEETTEEE
T ss_pred EEECCeeE
Confidence 87776544
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.56 E-value=4.5e-06 Score=101.30 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=131.3
Q ss_pred EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc--------------EEEEEcCCCCcc-cCeeeccCC
Q psy4578 602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK--------------LMIWDTRSHNVS-KPSHTVDAH 666 (860)
Q Consensus 602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~--------------I~IWd~~~~~~~-~~~~~~~~h 666 (860)
..+++++...++..........+.+++|+| + +.|+.++.|+. |.+|++.++... ..+.....+
T Consensus 189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 456777776666544322223347899999 4 66666665543 889998765321 122222233
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578 667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 746 (860)
Q Consensus 667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas 746 (860)
...+.++.|+|||+++++++.. +. .....|.+||+.++.. .....+..+...+.... +|+|..+++.
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~-~~----------~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~-~~dg~~l~~~ 333 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSE-GT----------DPVNTVHVARVTNGKI-GPVTALIPDLKAQWDFV-DGVGDQLWFV 333 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEEC-TT----------CSCCEEEEEEEETTEE-CCCEEEECSSSSCEEEE-EEETTEEEEE
T ss_pred CeEEEEEEECCCCCEEEEEEEc-cC----------CCcceEEEEECCCCCC-cccEEecCCCCceEEEE-eccCCEEEEE
Confidence 3468899999999986655543 21 0133599999876511 10334444555555553 4888864444
Q ss_pred eeC---CCcEEEEeCCCCc-eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578 747 GSA---DKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822 (860)
Q Consensus 747 gs~---Dg~I~IWDl~~~~-~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i 822 (860)
+.. ++.|.+||+.++. .....+..+...+.+++|+ +..++++...|+..++|.+.... ...
T Consensus 334 s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g-------------~~~ 398 (741)
T 1yr2_A 334 SGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG-------------KPA 398 (741)
T ss_dssp ECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS-------------CEE
T ss_pred ECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC-------------Cce
Confidence 332 3459999998752 2233445555567778887 44578889999988888665211 112
Q ss_pred EEecC-ccCceEEEEEccCCCeEEEEEeC
Q psy4578 823 FIHGG-HTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 823 ~~~~~-h~~~I~~i~~spdg~~Llasgs~ 850 (860)
..+.. +.+.|..+.++|++..++++.+.
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 22222 35678889999998876655543
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.55 E-value=1.2e-05 Score=84.55 Aligned_cols=194 Identities=5% Similarity=-0.051 Sum_probs=125.7
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
..+.++++.+ ++.++++...++.|..||.. +.. . ..........+.++++.++|. ++++...++.
T Consensus 62 ~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~---------- 126 (300)
T 2qc5_A 62 AKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDR---------- 126 (300)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC-EEEEETTTTE----------
T ss_pred CcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC-EEEEccCCCe----------
Confidence 5688999987 67777777667899999987 432 1 112222346789999999887 5666655565
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs 781 (860)
|..||.. +.. ...........+.+++++++|. ++++...++.|..||. ++.........+...+.+++++
T Consensus 127 -----i~~~~~~-g~~--~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 127 -----IGKLTAD-GTI--YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG 196 (300)
T ss_dssp -----EEEECTT-SCE--EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred -----EEEECCC-CCE--EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence 7777765 311 1111222345789999999998 5767666789999998 4443222233345678999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC-CCeEee
Q psy4578 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-DNIMQK 856 (860)
Q Consensus 782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~-Dg~IrI 856 (860)
++|. ++++....+.|.+||. .+... ......+...+.+++++++|. ++++... +++.++
T Consensus 197 ~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 197 NDGA-LWFVEIMGNKIGRITT-TGEIS-------------EYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRI 256 (300)
T ss_dssp TTSS-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEE
T ss_pred CCCC-EEEEccCCCEEEEEcC-CCcEE-------------EEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEE
Confidence 9986 4555556678999997 32111 111223446688999999998 5655544 344444
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.51 E-value=5.5e-06 Score=99.74 Aligned_cols=217 Identities=12% Similarity=0.103 Sum_probs=133.6
Q ss_pred eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC-------------cEEEEEcCCCCcc-cCeeeccC-
Q psy4578 601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ-------------KLMIWDTRSHNVS-KPSHTVDA- 665 (860)
Q Consensus 601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG-------------~I~IWd~~~~~~~-~~~~~~~~- 665 (860)
+..+++++..+++.............++|+ + ++.|+.++.+. .|.+|++.++... ..+.....
T Consensus 154 ~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 154 WREIHLMDVESKQPLETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp EEEEEEEETTTCSEEEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred eEEEEEEECCCCCCCccccCCceeccEEEe-C-CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 355677777666644332112224788999 5 45555555553 3999998764321 12222233
Q ss_pred CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578 666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745 (860)
Q Consensus 666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla 745 (860)
|...+.++.|+|+|++++++.+.++. .+.|.++|+.++. .....+..+....... |+++|..+++
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~------------~~~i~~~d~~~~~--~~~~~l~~~~~~~~~~-~~~~g~~l~~ 296 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTS------------GNRLYVKDLSQEN--APLLTVQGDLDADVSL-VDNKGSTLYL 296 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSS------------CCEEEEEETTSTT--CCCEEEECSSSSCEEE-EEEETTEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCC------------CcEEEEEECCCCC--CceEEEeCCCCceEEE-EeccCCEEEE
Confidence 45567899999999987777665432 3459999998753 2334555566655555 6777776677
Q ss_pred EeeCC---CcEEEEeCCCCce-eeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCC
Q psy4578 746 TGSAD---KTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPP 819 (860)
Q Consensus 746 sgs~D---g~I~IWDl~~~~~-~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~ 819 (860)
++..+ +.|..||+.++.. ....+..|...+. .|++++++++++...+| .|++||+..... ..
T Consensus 297 ~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~--------- 364 (693)
T 3iuj_A 297 LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-RE--------- 364 (693)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EE---------
T ss_pred EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EE---------
Confidence 76654 6799999987643 1244556666665 89999998666666666 688888764211 11
Q ss_pred ccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~ 850 (860)
......+.+..+.+++++..++++.+.
T Consensus 365 ----l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 365 ----VALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp ----ECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred ----eecCCCceEEeeecCCCCCEEEEEecC
Confidence 111233456677777777766655543
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.44 E-value=2.3e-05 Score=86.88 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=39.7
Q ss_pred eeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCC-------CCCeeEEEEccCCCeEEEEEeC
Q psy4578 626 DVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA 688 (860)
Q Consensus 626 ~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~llasgs~ 688 (860)
.+.++| +++.++++. .++.|.+||..+.+. +..+... ......+.|+|+|++++++...
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~---~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~ 145 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA 145 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcE---EEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence 999999 566555554 367899999987433 2222111 1234589999999986555433
Q ss_pred -CCc
Q psy4578 689 -DKT 691 (860)
Q Consensus 689 -Dg~ 691 (860)
++.
T Consensus 146 ~~~~ 149 (373)
T 2mad_H 146 AGPA 149 (373)
T ss_pred CCCe
Confidence 455
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.44 E-value=4.1e-06 Score=89.81 Aligned_cols=211 Identities=12% Similarity=0.033 Sum_probs=119.9
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
.....+.++++++ +++++++...++.|.+|+.. +..........+. ...+.+++++++|. ++++-..-|+...+..
T Consensus 83 ~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 83 DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQG 159 (305)
T ss_dssp ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGS
T ss_pred CCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccc
Confidence 3445688999998 67776666566789999975 3221111111111 23467899999998 4665211111000000
Q ss_pred c--ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-----CCcEEEEeCCCCcee-eEEe-
Q psy4578 698 E--EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-----DKTVALWDLRNLKLK-LHSF- 768 (860)
Q Consensus 698 ~--~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-----Dg~I~IWDl~~~~~~-~~~~- 768 (860)
. ......+.|..||..+++. . .+. .......++|+|++..++++.+. ++.|.+||+...... ...+
T Consensus 160 ~~~~~~~~~~~v~~~d~~~g~~---~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 234 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDGSPL---Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234 (305)
T ss_dssp CCCCCSSSCEEEEEECSSSCCC---E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred cccccccCCCeEEEEcCCCCcE---E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence 0 0011124477777765532 1 122 33456889999999964444433 278999998764310 1111
Q ss_pred ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578 769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg 848 (860)
....+....++++++|. |..++.+ .|.+|+... + .+....... .+.+++|+++++.|++ +
T Consensus 235 ~~~~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g-~--------------~~~~~~~~~-~~~~~~f~~d~~~L~i-t 294 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGGW--LWSSSGT-GVCVFDSDG-Q--------------LLGHIPTPG-TASNCTFDQAQQRLFI-T 294 (305)
T ss_dssp CCSSSCCCSEEECTTSC--EEECCSS-EEEEECTTS-C--------------EEEEEECSS-CCCEEEECTTSCEEEE-E
T ss_pred ECCCCCCCeEEECCCCC--EEEecCC-cEEEECCCC-C--------------EEEEEECCC-ceeEEEEeCCCCEEEE-E
Confidence 11234456789999997 3444444 499998743 1 122222222 5889999999987554 4
Q ss_pred eCCCeEeec
Q psy4578 849 SEDNIMQKP 857 (860)
Q Consensus 849 s~Dg~IrI~ 857 (860)
+.++..+++
T Consensus 295 ~~~~l~~~~ 303 (305)
T 3dr2_A 295 GGPCLWMLP 303 (305)
T ss_dssp ETTEEEEEE
T ss_pred cCCeEEEEE
Confidence 557877764
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.33 E-value=9.2e-06 Score=87.03 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=117.8
Q ss_pred cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
+.....+..|+|+++.+++++..++.|..|+. ++. ...+..+...+.+++++++|+ ++++...++.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~-------- 108 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA-------- 108 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC----EEEEEESCSCEEEEEECTTSC-EEEEETTTTE--------
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC----EEEEeCCCCccceeeECCCCC-EEEEECCCCE--------
Confidence 34445688999955557888888999999987 332 233444567789999999998 5555544455
Q ss_pred cccCCCcEEEEeCCCCCCCCCee-eecC-CCCCeEEEEEcCCCCcEEEE----eeC-------------CCcEEEEeCCC
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSH-TVDA-HTAEVNCLSFNPYSEYILAT----GSA-------------DKTVALWDLRN 760 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~-~~~~-h~~~I~sl~~sp~g~~llas----gs~-------------Dg~I~IWDl~~ 760 (860)
|..|+.. +.. ..+. ...+ ....+.+++++|+|. +++| |.. .+.|..||..+
T Consensus 109 -------v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 109 -------ITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp -------EEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred -------EEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 7777764 211 1111 1111 113467899999998 5665 432 25678888766
Q ss_pred CceeeEEeccCCCceEEEEEcCCCCCEEEEEECC------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578 761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834 (860)
Q Consensus 761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~ 834 (860)
+.... +. .....+.++|+|+++.+ +.+... +.|.+|++.... ... ..... ....+...+
T Consensus 179 g~~~~--~~-~~~~p~gl~~spdg~~l-yv~~~~~~~~~~~~i~~~~~~~~~-l~~--------~~~~~--~~~~~~pdg 243 (305)
T 3dr2_A 179 SPLQR--MA-DLDHPNGLAFSPDEQTL-YVSQTPEQGHGSVEITAFAWRDGA-LHD--------RRHFA--SVPDGLPDG 243 (305)
T ss_dssp CCCEE--EE-EESSEEEEEECTTSSEE-EEEECCC---CCCEEEEEEEETTE-EEE--------EEEEE--CCSSSCCCS
T ss_pred CcEEE--Ee-cCCCCcceEEcCCCCEE-EEEecCCcCCCCCEEEEEEecCCC-ccC--------CeEEE--ECCCCCCCe
Confidence 65422 22 33467889999999864 444443 789999987532 100 00011 111234556
Q ss_pred EEEccCCCeEEEEEeCCCeEee
Q psy4578 835 FSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 835 i~~spdg~~Llasgs~Dg~IrI 856 (860)
++++++|+ +.++. .+++.++
T Consensus 244 i~~d~~G~-lwv~~-~~gv~~~ 263 (305)
T 3dr2_A 244 FCVDRGGW-LWSSS-GTGVCVF 263 (305)
T ss_dssp EEECTTSC-EEECC-SSEEEEE
T ss_pred EEECCCCC-EEEec-CCcEEEE
Confidence 78888888 34333 5554443
No 216
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.30 E-value=0.00027 Score=73.80 Aligned_cols=161 Identities=6% Similarity=0.043 Sum_probs=108.5
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
..+.+++|++.++.++++-..++.|..++...... .............+++++++..++++....+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~---------- 102 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR---------- 102 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTE----------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCE----------
Confidence 45779999986677777777788999999876321 22222223567899999987777777666666
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC--CCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
|.+++..... ..............++++|++.+++++... .+.|..++...... .............++
T Consensus 103 -----I~~~~~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia 173 (267)
T 1npe_A 103 -----IEVAKMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLT 173 (267)
T ss_dssp -----EEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEE
T ss_pred -----EEEEEcCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEE
Confidence 8888876431 111122222457899999976665655543 47888888875442 111222335678999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+++++..++++....+.|.++|...
T Consensus 174 ~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 174 FDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTE
T ss_pred EcCCCCEEEEEECCCCEEEEEecCC
Confidence 9998887677777788999999875
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.29 E-value=1.3e-05 Score=87.67 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=117.8
Q ss_pred cccceeeeEeeccCCcEEEEEeC-----CCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEccCCCeEEEEEe-
Q psy4578 620 KLRLLIDVAWHLLHESLFGSVAD-----DQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGS- 687 (860)
Q Consensus 620 ~~~~V~~v~~sp~~~~~lasgs~-----DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~sp~g~~llasgs- 687 (860)
+...+.++++++ +++++++-.. ++.|.+||..+++. +..+. .+...+..+++++++..++++..
T Consensus 65 ~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~---~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 65 TFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQL---SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEE---EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred ceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeE---EEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 456799999998 5666665443 57899999987532 22221 12345689999987666666655
Q ss_pred --CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC-----------------------------CCCeEEEEE
Q psy4578 688 --ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH-----------------------------TAEVNCLSF 736 (860)
Q Consensus 688 --~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h-----------------------------~~~I~sl~~ 736 (860)
.++. |.+||..++.. ...+.+| ...+..++|
T Consensus 141 ~~~~~~---------------i~v~d~~~g~~---~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~ 202 (343)
T 2qe8_A 141 PDDKAA---------------LIRVDLQTGLA---ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL 202 (343)
T ss_dssp SGGGCE---------------EEEEETTTCCE---EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE
T ss_pred cCCCCe---------------EEEEECCCCCE---EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe
Confidence 4555 67777654421 1111110 124688999
Q ss_pred cCCCCcEEEEeeCCC-cEEEEeCC---CCce----e--eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578 737 NPYSEYILATGSADK-TVALWDLR---NLKL----K--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 806 (860)
Q Consensus 737 sp~g~~llasgs~Dg-~I~IWDl~---~~~~----~--~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~ 806 (860)
+|+|+. ++.+..++ .+..++.. .... . .....++.+....++++++|. ++++...++.|.+||..++.
T Consensus 203 s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 203 DAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE
T ss_pred ccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC
Confidence 999986 55555444 55555432 1110 0 001123444567799999986 67777788999999983321
Q ss_pred cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
. ..+.. ..+...+.+++|+++|. ++++.+..+.
T Consensus 281 ~------------~~~~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~ 313 (343)
T 2qe8_A 281 Y------------KLLVT-DEKLSWTDSFNFGSDGY-LYFDCNQLHH 313 (343)
T ss_dssp E------------EEEEE-CGGGSCEEEEEECTTSC-EEEEECCGGG
T ss_pred E------------EEEEE-CCceecCCeeEECCCCc-EEEEeCcccc
Confidence 1 11111 12345689999999987 5666654443
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.19 E-value=2.9e-05 Score=86.81 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred eeeeEeeccCCcEEEEEeCC------CcEEEEEcCCCCcccCeeeccC--C-CCCeeEEEEccCCCeEEEEEeC------
Q psy4578 624 LIDVAWHLLHESLFGSVADD------QKLMIWDTRSHNVSKPSHTVDA--H-TAEVNCLSFNPYSEYILATGSA------ 688 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~D------G~I~IWd~~~~~~~~~~~~~~~--h-~~~V~~l~~sp~g~~llasgs~------ 688 (860)
-..+...| ++ +++++..+ |.|.++|..+.+ .+.++.. . ...-..+.|+|+++. +++...
T Consensus 140 Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~---v~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~ 213 (462)
T 2ece_A 140 LHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFE---PLGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTI 213 (462)
T ss_dssp EEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCC---EEEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHH
T ss_pred ccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCe---EEEEEccCCCCccccceEEECCCCCE-EEEccCcCcccc
Confidence 44566777 55 77776666 789999998854 3444431 1 123456889999995 555531
Q ss_pred -CCceeeecccc-cccCCCcEEEEeCCCCCCCCCeeeecCC--CCCeEEEEE--cCCCCcEEEEee-----CCCcEEEEe
Q psy4578 689 -DKTQFEVEEEE-EENYDQKLMIWDTRSHNVSKPSHTVDAH--TAEVNCLSF--NPYSEYILATGS-----ADKTVALWD 757 (860)
Q Consensus 689 -Dg~i~~~~~~~-~~~~dg~I~iwDl~~~~~~~~~~~~~~h--~~~I~sl~~--sp~g~~llasgs-----~Dg~I~IWD 757 (860)
.|. .... .+..+..|.+||+.++ +.+.++... ......+.| +|++++.++++. .+++|.+|.
T Consensus 214 ~~g~----~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 214 EDGL----KLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp TTCC----CTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred cccc----chhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 110 0000 0123456999999875 344444432 123445655 999998777777 788998877
Q ss_pred CCCCceeeEE---eccC----------------CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578 758 LRNLKLKLHS---FESH----------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818 (860)
Q Consensus 758 l~~~~~~~~~---~~~h----------------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 818 (860)
...+...... .... ......+.+++||+++.++.-..+.|.+||+......
T Consensus 287 ~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~---------- 356 (462)
T 2ece_A 287 YEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP---------- 356 (462)
T ss_dssp EETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC----------
T ss_pred ecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------
Confidence 6554321111 1110 2457789999999987777778899999998642211
Q ss_pred CccEEEec-C-------c------cCceEEEEEccCCCeEEEEE
Q psy4578 819 PELLFIHG-G-------H------TAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 819 ~~~i~~~~-~-------h------~~~I~~i~~spdg~~Llasg 848 (860)
.++.... + | .+.-..++++|||++|+++.
T Consensus 357 -~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 -VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp -EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred -EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1111111 0 0 12357899999999988887
No 219
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.18 E-value=0.00035 Score=72.91 Aligned_cols=186 Identities=6% Similarity=0.045 Sum_probs=115.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccC--eeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578 636 LFGSVADDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713 (860)
Q Consensus 636 ~lasgs~DG~I~IWd~~~~~~~~~--~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~ 713 (860)
+|+.+.. +.|+.+++........ ...+......+.+++|++++..++++....+. |..++..
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~---------------I~~~~~~ 66 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS---------------IGRASLH 66 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE---------------EEEEESS
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE---------------EEEEecC
Confidence 3444433 4788888875432110 11111112457899999988877777766666 8888887
Q ss_pred CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 793 (860)
Q Consensus 714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~ 793 (860)
... .............+++++|++..++++....+.|.++|...... .............++++|++..++++...
T Consensus 67 g~~---~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 67 GGE---PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp SCC---CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred CCC---cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECC
Confidence 542 22222222356789999998776777777788999999876543 22222222567899999976665555543
Q ss_pred --CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 794 --DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 794 --Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.+.|..+++..... ..+ ..........+++++++.+|+++....+.|.
T Consensus 143 ~~~~~I~~~~~dg~~~------------~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 143 RDNPKIETSHMDGTNR------------RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp SSSCEEEEEETTSCCC------------EEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcEEEEEecCCCCc------------EEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 46888888754211 111 1112245788999998887888877776665
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.16 E-value=3.6e-05 Score=84.05 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=117.5
Q ss_pred cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCe----eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 622 RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~----~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
..+..+++++ +++++++.. .+|.++||.+.++.. ... .....+-..+.+++++++++ ++++....
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~------ 87 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN------ 87 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH------
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC------
Confidence 4678999998 678888764 234366666653311 100 11123456899999999886 55554321
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCCCCcEEEEee---CCCcEEEEeCCCCceeeE
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGS---ADKTVALWDLRNLKLKLH 766 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~g~~llasgs---~Dg~I~IWDl~~~~~~~~ 766 (860)
....++.|.+||+.+++ .+..+. .+...+..++++|++..++++.+ .++.|.+||..++.. ..
T Consensus 88 ----~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r 159 (343)
T 2qe8_A 88 ----QSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-AR 159 (343)
T ss_dssp ----HHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EE
T ss_pred ----CcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EE
Confidence 00011238888887653 222222 12345689999987666667766 688999999987654 33
Q ss_pred EeccC-----------------------------CCceEEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccccccccC
Q psy4578 767 SFESH-----------------------------KDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAED 816 (860)
Q Consensus 767 ~~~~h-----------------------------~~~V~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~~~~~~~ 816 (860)
.+.+| ...+..++|+|+|+. |+.+..++ .+..++........ .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~-~~~~~- 236 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQ-LTDAE- 236 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTT-CCHHH-
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCC-CChhh-
Confidence 33221 123688999999986 55555444 55555532111000 00000
Q ss_pred CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
....+. ..++.+....++++++|. ++++...++.|.
T Consensus 237 -~~~~~~-~~g~~g~pdgia~d~~G~-l~va~~~~~~V~ 272 (343)
T 2qe8_A 237 -LGSKIE-RYSEKPICDGISIDKDHN-IYVGDLAHSAIG 272 (343)
T ss_dssp -HHTTCE-EEEECCSCSCEEECTTCC-EEEEEGGGTEEE
T ss_pred -hhcceE-ecccCCCCceEEECCCCC-EEEEccCCCeEE
Confidence 000000 112333456788888887 566666655554
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.09 E-value=3.7e-05 Score=85.91 Aligned_cols=209 Identities=13% Similarity=0.137 Sum_probs=124.8
Q ss_pred ccCCcEEEEEeCCCcEEEEEcCCCC-cccCeeecc-------CCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578 631 LLHESLFGSVADDQKLMIWDTRSHN-VSKPSHTVD-------AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN 702 (860)
Q Consensus 631 p~~~~~lasgs~DG~I~IWd~~~~~-~~~~~~~~~-------~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~ 702 (860)
++...++++|..++.|.|+|+.+.. ..+...++. ........+...|+| +++++..+. .+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~---------~g~ 161 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE---------EGE 161 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET---------TSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc---------CCC
Confidence 5445567778888999999997532 123333331 011245667888988 455554331 122
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecC--CC-CCeEEEEEcCCCCcEEEEee-------------------CCCcEEEEeCCC
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDA--HT-AEVNCLSFNPYSEYILATGS-------------------ADKTVALWDLRN 760 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~--h~-~~I~sl~~sp~g~~llasgs-------------------~Dg~I~IWDl~~ 760 (860)
..|.+.++|..+. +.+..... .. ..-..+.|+|+++. +++.. .+.+|.+||+.+
T Consensus 162 ~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 162 GPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp SCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 4456999999886 33334331 11 22346889999994 66663 368999999998
Q ss_pred CceeeEEeccC--CCceEEEEE--cCCCCCEEEEEE-----CCCcEEEEECCCCCcccccccccCCCCccEEEe------
Q psy4578 761 LKLKLHSFESH--KDEIFQVQW--SPHNETILASSG-----TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH------ 825 (860)
Q Consensus 761 ~~~~~~~~~~h--~~~V~~l~f--sp~g~~lL~tgs-----~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~------ 825 (860)
.+. +..+... ......+.| +|+|++.++++- .+++|.+|....+. ......-.-........+
T Consensus 238 ~k~-~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 238 RKR-IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TEE-EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGG
T ss_pred CcE-eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccc
Confidence 764 5555432 123455655 999998777777 78899888765421 100000000000000000
Q ss_pred -cCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 826 -GGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 826 -~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.+-......|.+|+||++|.++.-..+.|.+
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav 347 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ 347 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence 0012457889999999999999888888875
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.07 E-value=0.00021 Score=74.90 Aligned_cols=202 Identities=8% Similarity=0.035 Sum_probs=123.0
Q ss_pred eeeeEeeccCCcEEEEEeC--CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 624 LIDVAWHLLHESLFGSVAD--DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~--DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
...+.|++ ++.++++.+. ++.|+++|..+++....+. +..+ .....+++. +..++++.-.++.
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~--g~~lyv~t~~~~~---------- 87 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLL--NEKLYQVVWLKNI---------- 87 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEE--TTEEEEEETTCSE----------
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEe--CCEEEEEEecCCE----------
Confidence 46899997 4665555543 5799999999865422221 1122 122345554 5566666666666
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--C---CCceE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--H---KDEIF 776 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h---~~~V~ 776 (860)
+.++|..+. +.+.++...... ...++++|..++++ ..++.|.++|..+.+. .....- + -..++
T Consensus 88 -----v~viD~~t~---~v~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 88 -----GFIYDRRTL---SNIKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp -----EEEEETTTT---EEEEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEE
T ss_pred -----EEEEECCCC---cEEEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcE-EEEEEECCCCcccccce
Confidence 999999876 444454322111 23355678875655 4688999999998776 444332 1 12467
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.+.|. +|. +++....++.|.+.|..+++....+....... ........-......|+|+|+++.+++++...+.+.
T Consensus 156 ele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~-~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 156 ELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRK-KLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp EEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHH-HHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred eEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCccc-ccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 88888 664 56666578999999999876544432110000 000000001135689999999999999998777664
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.05 E-value=2.5e-05 Score=86.29 Aligned_cols=222 Identities=7% Similarity=-0.066 Sum_probs=113.5
Q ss_pred eccchhhhhhhhh-cccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeeccCC-------CCC
Q psy4578 607 ENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTVDAH-------TAE 669 (860)
Q Consensus 607 ~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~~~h-------~~~ 669 (860)
.+....++...+. ...+ .+.++|++..++++.+ .++.|.+||..+++. +.++... ...
T Consensus 51 ID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 51 SCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVGPR 125 (368)
T ss_dssp EETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBSCC
T ss_pred EECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccCCC
Confidence 3444444444433 3344 8999995445444432 468899999998543 4443221 124
Q ss_pred eeEEEEccCCCeEEEEEeC-CCceee--eccccc---------------------ccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578 670 VNCLSFNPYSEYILATGSA-DKTQFE--VEEEEE---------------------ENYDQKLMIWDTRSHNVSKPSHTVD 725 (860)
Q Consensus 670 V~~l~~sp~g~~llasgs~-Dg~i~~--~~~~~~---------------------~~~dg~I~iwDl~~~~~~~~~~~~~ 725 (860)
...++++|||++++++... +..+.+ ++.... ...+|.+.+.|+.+.. ..-....
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~--~~~~~v~ 203 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP--AAAGIVG 203 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC--CCCEECC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc--ccCCeEE
Confidence 5689999999985555433 344444 333220 0011111111111100 0000000
Q ss_pred --------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEecc-------C---CCceEEEEEcCCCCC
Q psy4578 726 --------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFES-------H---KDEIFQVQWSPHNET 786 (860)
Q Consensus 726 --------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~~-------h---~~~V~~l~fsp~g~~ 786 (860)
-...+. . ++++.. ++..+. +.+.+.|..+.... +..+.- + ......++++|+++.
T Consensus 204 ~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 204 AQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 000011 2 344443 233333 77888887643211 111110 0 011112689999988
Q ss_pred EEEEEE-C-------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCCeEee
Q psy4578 787 ILASSG-T-------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNIMQK 856 (860)
Q Consensus 787 lL~tgs-~-------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg~IrI 856 (860)
++++.. . ++.+.++|+.+.+....+. . .....+++|+|||+++++++. .++.|.|
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~--------------v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--------------N-GHDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--------------E-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEE--------------C-CCCcceEEECCCCCEEEEEccCCCCeEEE
Confidence 665544 2 2456699999865443321 1 124788999999998888888 5777764
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.01 E-value=0.0001 Score=82.89 Aligned_cols=218 Identities=9% Similarity=0.014 Sum_probs=113.4
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeec-cC---CCCCe
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTV-DA---HTAEV 670 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~-~~---h~~~V 670 (860)
+...+....++...+.-...- .+.++|++..++++.. .++.|.++|..+.+....+..- .. .....
T Consensus 101 VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 101 QFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 334444444444444333233 8999995555555432 4678999999985432222210 00 12345
Q ss_pred eEEEEccCCCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC----------------------
Q psy4578 671 NCLSFNPYSEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH---------------------- 727 (860)
Q Consensus 671 ~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h---------------------- 727 (860)
..+.++|||++++++... ++. |.+.|+.+.+ .+..+.-.
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~---------------VsVID~~t~k---vv~~I~v~g~~~~~p~g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPA---------------VGVVDLEGKT---FDRMLDVPDCYHIFPASPTVFYMNCRDGSL 241 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCE---------------EEEEETTTTE---EEEEEECCSEEEEEEEETTEEEEEETTSSE
T ss_pred ceEEEcCCCCEEEEEecCCCCe---------------EEEEECCCCe---EEEEEEcCCceeeccCCCcEEEEEcCCCCE
Confidence 678999999986665433 566 5555555432 11111100
Q ss_pred ------CCCe----------------EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-EEecc----------CCCc
Q psy4578 728 ------TAEV----------------NCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFES----------HKDE 774 (860)
Q Consensus 728 ------~~~I----------------~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~-~~~~~----------h~~~ 774 (860)
.+.+ ..+.+.+++..++++ +..|.+.+.|..+....+ ..+.- ....
T Consensus 242 ~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g 320 (426)
T 3c75_H 242 ARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG 320 (426)
T ss_dssp EEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred EEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence 0000 012334554432222 345566666664433110 00000 0011
Q ss_pred eEEEEEcCCCCCEEEEEEC---------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC-eE
Q psy4578 775 IFQVQWSPHNETILASSGT---------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV 844 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~---------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~-~L 844 (860)
...++++|++..++++... ++.|.++|..+.+....+ .. .....+++|+|||+ .+
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I--------------~v-g~~P~gia~spDg~~~l 385 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI--------------EL-GHEIDSINVSQDAEPLL 385 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE--------------EE-EEEECEEEECCSSSCEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE--------------EC-CCCcCeEEEccCCCEEE
Confidence 1226788888876655431 357999998885543222 11 12478899999999 66
Q ss_pred EEEEeCCCeEee
Q psy4578 845 ICSVSEDNIMQK 856 (860)
Q Consensus 845 lasgs~Dg~IrI 856 (860)
+++...++.|.|
T Consensus 386 yv~n~~s~~VsV 397 (426)
T 3c75_H 386 YALSAGTQTLHI 397 (426)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEcCCCCeEEE
Confidence 666656777654
No 225
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.97 E-value=0.002 Score=70.41 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=110.9
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
........++|++.++.++++-...+.|..++...... .............+++.+.+..++.+-...+.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~------- 139 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR------- 139 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE-------
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc---eEEEeCCCCCccEEEEecCCCeEEEEcCCCCe-------
Confidence 34456789999986777777777788999999876422 11222223455788998877777777666665
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIFQ 777 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~~ 777 (860)
|.+.++... ...............++++|.+.+++++-... +.|..+++..... .......-...+.
T Consensus 140 --------I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnG 207 (349)
T 3v64_C 140 --------IEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNG 207 (349)
T ss_dssp --------EEEEETTSC---SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEE
T ss_pred --------EEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcce
Confidence 888887653 12222223345678999999777667776666 8899999876543 1112223446789
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 778 VQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
++|+|++..+.++-...+.|..+|+..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 999998877676666778999999864
No 226
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.97 E-value=0.0012 Score=73.26 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=111.0
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~ 696 (860)
+.........++|++.++.++++-...+.|..++...... ...+.........+++.+.+..++++-...+.
T Consensus 111 ~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~----- 182 (386)
T 3v65_B 111 LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR----- 182 (386)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEEETTTTEEEEEETTTTE-----
T ss_pred EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCe-----
Confidence 3344556889999986777777777788999999876421 11122222345678888877777777665665
Q ss_pred ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCce
Q psy4578 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEI 775 (860)
Q Consensus 697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V 775 (860)
|.+.++... .....+.........++++|.+.+++++-... +.|..+++..... .......-...
T Consensus 183 ----------I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~P 248 (386)
T 3v65_B 183 ----------IEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWP 248 (386)
T ss_dssp ----------EEECBTTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCE
T ss_pred ----------EEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCe
Confidence 777776543 12222223335678999999887767666555 7899999876543 22223334567
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 776 FQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+.++|+|++..++++-+..+.|..+|+..
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 89999988877677766778899999764
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.94 E-value=1.5e-05 Score=88.11 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=85.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------
Q psy4578 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------ 700 (860)
Q Consensus 633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------ 700 (860)
.+..+++++.||.|..||..+++. +..+.. +.+.+..+..++. ++++++.||.++.|+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 467788899999999999998643 333333 3444444555565 4666678888777654221
Q ss_pred ----------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578 701 ----------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764 (860)
Q Consensus 701 ----------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~ 764 (860)
+..++.+..||..+++ .+..+..+. ...++|++.. +++|+.|+.|+.||.++++.
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~---~~w~~~~~~----~~~~~p~~~~-v~~~~~dg~v~a~d~~tG~~- 152 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGE---KQQTLSSAF----ADSLSPSTSL-LYLGRTEYTITMYDTKTREL- 152 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCCCc---EEEEecCCC----cccccccCCE-EEEEecCCEEEEEECCCCCE-
Confidence 1235678899988873 333333332 2345666764 77888999999999998875
Q ss_pred eEEeccCCCceEEEEEcCCC---CCEEEEEECCCcEEEEECCCCCcc
Q psy4578 765 LHSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEE 808 (860)
Q Consensus 765 ~~~~~~h~~~V~~l~fsp~g---~~lL~tgs~Dg~I~iWdl~~~~~~ 808 (860)
+..+..+. ....++++++ .. +++++.||.++.||..+++..
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~-v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMS-HFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCC-EEEEETSCEEEEECTTTCCEE
T ss_pred EEeEeccc--ccCccccCCccccce-EEEECCCCEEEEEECCCCcEE
Confidence 32222111 1222333331 33 667889999999999886543
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.92 E-value=0.00048 Score=71.55 Aligned_cols=193 Identities=10% Similarity=0.132 Sum_probs=117.8
Q ss_pred eeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 624 LIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
...+.|+ ++.++.+++.+| .|+++|+.+++.. ..... ..........++++.++.+.-.++.
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~---------- 108 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL---QQIEL-GKRYFGEGISDWKDKIVGLTWKNGL---------- 108 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE---EEEEC-CTTCCEEEEEEETTEEEEEESSSSE----------
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE---EEEec-CCccceeEEEEeCCEEEEEEeeCCE----------
Confidence 4678887 467777777776 8999999996543 33222 2223222223346666666656666
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIF 776 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~ 776 (860)
+.+||..+. +.+.++.... .-..+ ++++..++++ ..++.|.++|..+.+. ...... .. ..++
T Consensus 109 -----v~v~D~~t~---~~~~ti~~~~-eG~gl--t~dg~~L~~S-dGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 109 -----GFVWNIRNL---RQVRSFNYDG-EGWGL--THNDQYLIMS-DGTPVLRFLDPESLTP-VRTITVTAHGEELPELN 175 (262)
T ss_dssp -----EEEEETTTC---CEEEEEECSS-CCCCE--EECSSCEEEC-CSSSEEEEECTTTCSE-EEEEECEETTEECCCEE
T ss_pred -----EEEEECccC---cEEEEEECCC-CceEE--ecCCCEEEEE-CCCCeEEEEcCCCCeE-EEEEEeccCCccccccc
Confidence 999999887 4555554322 11233 3567764444 4578899999998876 444332 11 3455
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
.+.|. +|+ +++..-.++.|.+.|..+++....+....-.+. ......-......|||+|+++.|+++|-
T Consensus 176 ELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~--~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 176 ELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAE--AGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGG--SCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccc--cccccCcCCceEEEEEcCCCCEEEEECC
Confidence 67886 664 555555788999999999776554432210000 0000111245688999999998888774
No 229
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.90 E-value=0.0038 Score=67.12 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=107.2
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
.......+++|++.++.++++-..++.|..++...... ......+...-.....+++.+.+..++++-...+.
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~------ 100 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT------ 100 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE------
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCE------
Confidence 34456789999986677777777788999999875110 01111122222456788998777766676666666
Q ss_pred cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceE
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIF 776 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~ 776 (860)
|.++|.... .....+.........++++|.+.+++++.... +.|..+++..... .......-...+
T Consensus 101 ---------I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~~P~ 167 (316)
T 1ijq_A 101 ---------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPN 167 (316)
T ss_dssp ---------EEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEE
T ss_pred ---------EEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCCCce
Confidence 888887643 11112222335678999999777666665443 7898888876543 222222345688
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.++|++++..++++-+..+.|..+|+..
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 9999998877666666778999999874
No 230
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.90 E-value=0.00014 Score=80.50 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=131.5
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeeccC----CCCCe
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTVDA----HTAEV 670 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~~~----h~~~V 670 (860)
++..+....++...+.....- .+.++|++..++++.+ .++.|.+||..+.+....+..-.+ .....
T Consensus 61 V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence 333444444444444332222 4999995444444432 467899999998543222221110 01245
Q ss_pred eEEEEccCCCeEEEEEeC-CCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578 671 NCLSFNPYSEYILATGSA-DKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPSHTVD 725 (860)
Q Consensus 671 ~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~ 725 (860)
..++++|||++++++... ++.+.+++.... ...||++.+.++.+.. +......
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g--~v~~~~~ 217 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG--TPEITHT 217 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS--CCEEEEC
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCC--eEEEeec
Confidence 679999999986666543 677766665433 1357777778876521 1111111
Q ss_pred CC----CCCeE-EEEEc-CCCCcEEEEeeCCCcEEEEeCCCCcee-eEEec---------c-CCCceEEEEEcCCCCCEE
Q psy4578 726 AH----TAEVN-CLSFN-PYSEYILATGSADKTVALWDLRNLKLK-LHSFE---------S-HKDEIFQVQWSPHNETIL 788 (860)
Q Consensus 726 ~h----~~~I~-sl~~s-p~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~---------~-h~~~V~~l~fsp~g~~lL 788 (860)
.+ ...+. ...|. ++|+. ++ .+.+|.|.+.|..+.... ...+. + .......+++++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~-~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly 295 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRL-VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 295 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEE-EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred ceeccccccccccceeEcCCCcE-EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence 11 12221 23553 67753 33 455799999999765421 11111 0 112233477799988766
Q ss_pred EEEEC---------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC-eEEEEEeCCCeEee
Q psy4578 789 ASSGT---------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQK 856 (860)
Q Consensus 789 ~tgs~---------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~-~Llasgs~Dg~IrI 856 (860)
++-.. .+.|.+.|+.+.+....+. -...+.++++++|++ .|+++...++.|.|
T Consensus 296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---------------vg~~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------------MGHEIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------------EEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred EEeccccccccCCCCCEEEEEECCCCeEEEEEE---------------CCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 55431 2579999999855443321 123678999999996 66666666777764
No 231
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.87 E-value=0.0011 Score=73.10 Aligned_cols=154 Identities=10% Similarity=-0.060 Sum_probs=95.3
Q ss_pred CCcEEEEEeC--CC---cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVAD--DQ---KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~--DG---~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
+++.+.++.. .+ .|.+||..+++ .+..+.....+ .++++|||++++++...... ...+..++.|
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~------~~rg~~~~~v 99 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGS---ILGHVNGGFLP--NPVAAHSGSEFALASTSFSR------IAKGKRTDYV 99 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCe---EEEEecCCCCC--CeEECCCCCEEEEEeccccc------cccCCCCCeE
Confidence 4555555442 33 88999998853 34444433333 89999999986666532111 0001123348
Q ss_pred EEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEE-eccCCCceEEE
Q psy4578 708 MIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHS-FESHKDEIFQV 778 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l 778 (860)
.+||..+.+ .+..+... ......+.|+|+|++++++... ++.|.++| .+++. +.. +.. .. ++
T Consensus 100 ~viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~ 170 (373)
T 2mad_H 100 EVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CY 170 (373)
T ss_pred EEEECCCCc---EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eE
Confidence 999998753 23222111 1234589999999985555433 58899999 88875 544 432 22 25
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578 779 QWSPHNETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
.+.|+++..+++.+.||.+.+||. +++.
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 566777666778889999999999 6443
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.84 E-value=0.00062 Score=70.73 Aligned_cols=193 Identities=10% Similarity=0.045 Sum_probs=119.9
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY 703 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~ 703 (860)
...+.|+ ++.++.+++.+|.|+++|+.+++....+ +.. ......++. +++.++.+.-.++.
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~--~g~~Ly~ltw~~~~------------ 117 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLAS--DGERLYQLTWTEGL------------ 117 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEE--CSSCEEEEESSSCE------------
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEE--eCCEEEEEEccCCE------------
Confidence 4578887 5788888899999999999997553333 222 111123444 45566666666666
Q ss_pred CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceEEE
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIFQV 778 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~~l 778 (860)
+.+||..+. +.+.++... ..-..++ +++..++++ ..++.|.++|..+.+. +..... +. ..++.+
T Consensus 118 ---v~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 ---LFTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp ---EEEEETTTT---EEEEEEECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEE
T ss_pred ---EEEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeE-EEEEEeCCCCccccccccc
Confidence 999999887 445555432 2223444 457764544 5588999999998876 444432 21 245677
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
.|. +|+ +++..-.++.|.+.|..+++....+....-.+... .....-....++|||+|+++.|++||-
T Consensus 187 e~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~-~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 187 ECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA-GQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT-TTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc-ccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 887 674 55555568899999999877655443211000000 000112245688999999888888874
No 233
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.76 E-value=0.0014 Score=67.48 Aligned_cols=194 Identities=9% Similarity=0.110 Sum_probs=117.9
Q ss_pred eeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 624 LIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
.-.+.|+. +.++.+++.+| .|+.+|+.+++. ...... ............++.++...-.++.
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv---~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~---------- 86 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRI---LQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHE---------- 86 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCE---EEEEEC-CTTCCEEEEEEETTEEEEEESSSSE----------
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCE---EEEEeC-CCCcceeEEEEeCCEEEEEEeeCCE----------
Confidence 55888884 66777777654 899999999654 333221 1122222222335666676666666
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIF 776 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~ 776 (860)
+.+||..+. +.+.++... ..-..++ +++..+++| ..++.|.++|..+.+. +..... +. ..++
T Consensus 87 -----v~v~D~~tl---~~~~ti~~~-~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 87 -----GFVYDLATL---TPRARFRYP-GEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp -----EEEEETTTT---EEEEEEECS-SCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEE
T ss_pred -----EEEEECCcC---cEEEEEeCC-CCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeE-EEEEEEccCCcccccce
Confidence 999999886 455555432 2223444 457765555 4588999999998876 444432 11 3456
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578 777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 849 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs 849 (860)
.+.|. +|+ +++..-.+..|.+.|..+++....+....-.+.... ....-....++|+|+|++..|++||-
T Consensus 154 eLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~-~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 154 ELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA-LTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS-CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc-ccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67776 564 555554678999999999776655443211100000 00112245688999999988888874
No 234
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.75 E-value=0.00056 Score=75.55 Aligned_cols=159 Identities=10% Similarity=0.021 Sum_probs=98.5
Q ss_pred eeEeeccCCcEEEEEeC-----CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 626 DVAWHLLHESLFGSVAD-----DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 626 ~v~~sp~~~~~lasgs~-----DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
.....| +++.+++... ++.|.+.|..+. +.+..+..-..+ . ++++|+|++++++...... ...
T Consensus 37 ~~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r------~~~ 104 (386)
T 3sjl_D 37 LEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSR------IAR 104 (386)
T ss_dssp CCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEE------TTE
T ss_pred eeccCC-CCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccc------ccc
Confidence 344566 4555444443 689999999885 334444433334 4 9999999986666531000 000
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCC
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHK 772 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~ 772 (860)
+..++.|.+||..+. +.+..+.-. ......++++|+|++++++... ++.|.++|+.+.+. +..+....
T Consensus 105 G~~~~~VsviD~~t~---~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g 180 (386)
T 3sjl_D 105 GERTDYVEVFDPVTL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD 180 (386)
T ss_dssp EEEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS
T ss_pred CCCCCEEEEEECCCC---eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC
Confidence 001223999999987 334433211 1245679999999986655433 78999999999886 55554221
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
. ....|.|...+++.+.||.+.+.++..
T Consensus 181 --~--~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 181 --C--YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp --E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred --c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence 1 223355544467888899999988876
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.70 E-value=6e-05 Score=87.02 Aligned_cols=216 Identities=8% Similarity=0.052 Sum_probs=129.1
Q ss_pred cceeeeEee--ccCCcEEEEEe------------------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578 622 RLLIDVAWH--LLHESLFGSVA------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 681 (860)
Q Consensus 622 ~~V~~v~~s--p~~~~~lasgs------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 681 (860)
.....+++. | ++.++++++ .++.+.++|..+. +...++..- +....++.+|+|++
T Consensus 134 ~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~ 208 (595)
T 1fwx_A 134 KGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW---EVAWQVLVS-GNLDNCDADYEGKW 208 (595)
T ss_dssp CSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT---EEEEEEEES-SCCCCEEECSSSSE
T ss_pred CCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCC---eEEEEEEeC-CCccceEECCCCCE
Confidence 456788873 6 566666553 3567999999874 333333221 23466789999998
Q ss_pred EEEEEeCCCc--------------eeeeccccc------c--cCCCcEEEEeCCCCCCCCC-eeeecCCCCCeEEEEEcC
Q psy4578 682 ILATGSADKT--------------QFEVEEEEE------E--NYDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNP 738 (860)
Q Consensus 682 llasgs~Dg~--------------i~~~~~~~~------~--~~dg~I~iwDl~~~~~~~~-~~~~~~h~~~I~sl~~sp 738 (860)
+++++..... +.+.+.... + ..-+.|.+.|..+.+. .. +..+.. .....++.++|
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~-~~~~~~Ipv-g~~PhGv~~sP 286 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-SLFTRYIPI-ANNPHGCNMAP 286 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC-CSSEEEEEE-ESSCCCEEECT
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC-ceeEEEEec-CCCceEEEEcC
Confidence 6666644422 111111110 0 1124599999987211 22 333321 23456899999
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCce-----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578 739 YSEYILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807 (860)
Q Consensus 739 ~g~~llasgs~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~ 807 (860)
||+++++++..+.+|.++|+.+... ..... .-......++|+|+| +..++.-.|+.|.+||+.....
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhh
Confidence 9999899988999999999986521 12222 234567899999999 6677778999999999876210
Q ss_pred ccccccccCCCCccEEEecCccCc-----eEEEEEccCCCeEEEEEeC
Q psy4578 808 EQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWVICSVSE 850 (860)
Q Consensus 808 ~~~~~~~~~~~~~~i~~~~~h~~~-----I~~i~~spdg~~Llasgs~ 850 (860)
. .. .+.....+.....|..+ -.++..+|||++|+++...
T Consensus 365 ~--~~--g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 365 A--YA--GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp H--HH--TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred h--hc--ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 0 00 00011233333333222 1233568999998877643
No 236
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.70 E-value=0.01 Score=66.00 Aligned_cols=169 Identities=10% Similarity=0.067 Sum_probs=110.5
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
+......+..++|++.++.++.+-...+.|..+++..... ......+.........+++.+.+..++++-...+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~---- 182 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT---- 182 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE----
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCe----
Confidence 3445567899999986677777766778999998865211 01122222234567889998877767777666666
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|.+.++... .....+.........++++|.+.+++++-.. .+.|...++..... .......-..
T Consensus 183 -----------I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~ 247 (400)
T 3p5b_L 183 -----------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW 247 (400)
T ss_dssp -----------EEEECTTTC---SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSC
T ss_pred -----------EEEEeCCCC---ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCc
Confidence 888887653 1222222234457899999977766665433 47899999887554 2223333457
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.+.+++++++..+.++-+..+.|..+|+..
T Consensus 248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 248 PNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 899999998877666666778899999865
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.69 E-value=0.0014 Score=69.83 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=87.3
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~ 713 (860)
+..+..++.+|.+..+|.. +.. ..........+.++...+++. +..|+.++. +..||..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~---------------l~~~d~~ 165 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTE---KWRFKTKKAIYATPIVSEDGT--IYVGSNDNY---------------LYAINPD 165 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTSC--EEEECTTSE---------------EEEECTT
T ss_pred CCEEEEEecCCEEEEEcCC-CCE---EEEEcCCCceeeeeEEcCCCE--EEEEcCCCE---------------EEEECCC
Confidence 4456677888999999987 432 223333344566667776676 455666666 7777776
Q ss_pred CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 793 (860)
Q Consensus 714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~ 793 (860)
+ ............+.++...+++. ++ .|+ +.+..|| .++.. ..........+.++...++|. +..++.
T Consensus 166 -g---~~~~~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~ 233 (330)
T 3hxj_A 166 -G---TEKWRFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT--IYVTSL 233 (330)
T ss_dssp -S---CEEEEEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC--EEEEET
T ss_pred -C---CEeEEEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe--EEEEcC
Confidence 4 33333333445566777777776 34 444 8899999 55554 444444556677888888875 567777
Q ss_pred CCcEEEEEC
Q psy4578 794 DRRLHVWDL 802 (860)
Q Consensus 794 Dg~I~iWdl 802 (860)
++.+..+|.
T Consensus 234 ~~gl~~~~~ 242 (330)
T 3hxj_A 234 DGHLYAINP 242 (330)
T ss_dssp TTEEEEECT
T ss_pred CCeEEEECC
Confidence 888888874
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.68 E-value=0.00071 Score=78.14 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=124.7
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-c-cCCCeEEEEE------eCCCceeeecccccccCCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-N-PYSEYILATG------SADKTQFEVEEEEEENYDQ 705 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~g~~llasg------s~Dg~i~~~~~~~~~~~dg 705 (860)
..++++...++.|.+.|+.+.+..+.+ .+ ........+++ + |++.++++++ ..||. .+......++
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii-~i-p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~----~l~~~~~~~~ 175 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAIL-EI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT----NMEDVANYVN 175 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE-EC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS----STTCGGGEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEE-eC-CCCCCCcceeeeecCCCcEEEEecccccccCCCCc----ccccccccCc
Confidence 334555555678999999985332222 22 22345788888 5 9999866654 23554 1222344566
Q ss_pred cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----------------------------------
Q psy4578 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----------------------------------- 750 (860)
Q Consensus 706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----------------------------------- 750 (860)
.+.++|..+. +....+.-. +.-..++.+|+|+++++++...
T Consensus 176 ~vtvID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 176 VFTAVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred eEEEEECCCC---eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 7999999875 333333311 1345678999999755554332
Q ss_pred --CcEEEEeCCC--CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578 751 --KTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 826 (860)
Q Consensus 751 --g~I~IWDl~~--~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~ 826 (860)
+.|.+.|.++ +...+..... .....++.++|||+++++++..+.+|.++|+.+..... ... -.....+....
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~-l~~~~~v~~~v 327 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YEN-ADPRSAVVAEP 327 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSC-CCGGGGEEECC
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccc-cCcccceEEEc
Confidence 2466777776 3221222321 23456799999999988888899999999999642110 000 00011121122
Q ss_pred CccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 827 GHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 827 ~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.-......++|+++| ++.++.--|+.|.
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTSLFLDSQVV 355 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence 233567899999999 7888888777764
No 239
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.66 E-value=0.018 Score=61.93 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=109.1
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
.......++.|++.++.++.+-...+.|..++........ ..+...-.....+++.+.+..++.+-...+.
T Consensus 32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glavd~~~g~ly~~d~~~~~------- 102 (318)
T 3sov_A 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEKLYWTDSETNR------- 102 (318)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEEECCSCCCEEEEETTTTEEEEEETTTTE-------
T ss_pred cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEcCCCCCccEEEEEcCCCeEEEEECCCCE-------
Confidence 3445678999998677777777778899999987642111 1111222456788888877766776655555
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQ 777 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~ 777 (860)
|.++++... ...............++++|.+.+++++-. ..+.|...++..... .......-...+.
T Consensus 103 --------I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Png 170 (318)
T 3sov_A 103 --------IEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNG 170 (318)
T ss_dssp --------EEEEETTSC---SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEE
T ss_pred --------EEEEECCCC---cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccE
Confidence 888887653 111222234456789999997776555542 357898888876543 2222233356789
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 778 VQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
++|++++..+.++=+..+.|..+|+..
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 999998777666666778999999864
No 240
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.62 E-value=0.014 Score=62.52 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCee
Q psy4578 644 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPSH 722 (860)
Q Consensus 644 G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~~ 722 (860)
..|+..|+.+... ...+ .....+..++|++.+..++.+....+. |..+++..... .....
T Consensus 10 ~~I~~i~~~~~~~---~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~---------------I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEY---TSLI-PNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp SSEEEEETTSCCC---EEEE-CSCSSEEEEEEETTTTEEEEEETTTTE---------------EEEEEC--------CEE
T ss_pred CeEEEEECCCcce---Eehh-cCCCceEEEEEEeCCCEEEEEECCCCc---------------EEEEECCCCCCCcccEE
Confidence 5689999887432 2222 234567899999988777777766666 77887765110 01111
Q ss_pred eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD 801 (860)
Q Consensus 723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd 801 (860)
.+...-....++++++.+..++++-..++.|.++|...... .............++++|.+..++++.... +.|...+
T Consensus 71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 22222245578999876666677767788999999886543 222333345678999999777666665443 7888888
Q ss_pred CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
+..... ..+ ....-.....++|++++..|+++-+..+.|.
T Consensus 150 ~dG~~~------------~~~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 150 LNGVDI------------YSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp TTSCCE------------EEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCe------------EEE--EECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 754111 001 1112345678999988877777776666554
No 241
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.59 E-value=0.0037 Score=75.73 Aligned_cols=201 Identities=9% Similarity=0.055 Sum_probs=110.0
Q ss_pred ceeeeEee-ccCCcEEE-EEeCCC----cEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 623 LLIDVAWH-LLHESLFG-SVADDQ----KLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 623 ~V~~v~~s-p~~~~~la-sgs~DG----~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
.+...+|+ | +++.+| +.+.+| .|+++|+.++ +... ..+ .....+++|+|||+.++.+......
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y~~~d~~~---- 244 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFYVTKDETL---- 244 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEEEEECTTC----
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEEEEECCCC----
Confidence 57789999 8 555554 444444 4999999886 4211 111 1124578999999986666543210
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeC--CCcEEEEeCCCCceee--EEec-
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSA--DKTVALWDLRNLKLKL--HSFE- 769 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~--Dg~I~IWDl~~~~~~~--~~~~- 769 (860)
...+|..+++.++.. .....+. .+.....++.|+|+|++++++... ...|.++|+.++.... ..+.
T Consensus 245 -------~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 245 -------RENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp -------CEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred -------CCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 112477788876521 1112222 223456788999999986666543 3458888988753212 3332
Q ss_pred cCCCceEEEEEcCCCCCEEEEEECC--C--cEEEEECCCCCcccccccccCCCCcc-EEEecCccCceEEEEEccCCCeE
Q psy4578 770 SHKDEIFQVQWSPHNETILASSGTD--R--RLHVWDLSKIGEEQSTEDAEDGPPEL-LFIHGGHTAKISDFSWNPNEPWV 844 (860)
Q Consensus 770 ~h~~~V~~l~fsp~g~~lL~tgs~D--g--~I~iWdl~~~~~~~~~~~~~~~~~~~-i~~~~~h~~~I~~i~~spdg~~L 844 (860)
.......++.|+. |+.+++....+ + .|..+|+.+.... .. +... .....+.++.+ .+.++
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-----------~~~li~~-~~~~~l~~~~~--~~~~l 381 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDW-----------SHVLVDH-SEDVFMESIAV--RSNYL 381 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCC-----------CCEEECC-CSSEEEEEEEE--CSSEE
T ss_pred CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccc-----------eeeEECC-CCCcEEEEEEE--ECCEE
Confidence 2344556666654 55555555544 3 5666665532110 11 1110 11113444444 45667
Q ss_pred EEEEeCCCeEee
Q psy4578 845 ICSVSEDNIMQK 856 (860)
Q Consensus 845 lasgs~Dg~IrI 856 (860)
+++...++..++
T Consensus 382 v~~~~~~g~~~l 393 (751)
T 2xe4_A 382 VVAGRRAGLTRI 393 (751)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEeCCEEEE
Confidence 878887776554
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.59 E-value=0.0014 Score=70.00 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=112.7
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN 702 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~ 702 (860)
.+.++...+ ++. +..|+.++.+..||.. +.. ..........+.++...+++. +..|+ +.
T Consensus 138 ~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~----------- 196 (330)
T 3hxj_A 138 IYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTE---KWRFKTNDAITSAASIGKDGT--IYFGS--DK----------- 196 (330)
T ss_dssp CCSCCEECT-TSC-EEEECTTSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTCC--EEEES--SS-----------
T ss_pred eeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCE---eEEEecCCCceeeeEEcCCCE--EEEEe--CE-----------
Confidence 356666664 444 5567788999999987 432 223333345567777777776 34444 44
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 782 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp 782 (860)
+..+| .++ ............+.++...++|. +..|+.++.+..+|... .. +..+......+.++...+
T Consensus 197 ----l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~g-~~-~~~~~~~~~~~~~~~~~~ 264 (330)
T 3hxj_A 197 ----VYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPDG-TE-KWRFKTGKRIESSPVIGN 264 (330)
T ss_dssp ----EEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTTS-CE-EEEEECSSCCCSCCEECT
T ss_pred ----EEEEC-CCC---cEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCCC-CE-eEEeeCCCCccccceEcC
Confidence 77787 443 33334444445678888888876 55677788898888543 33 344443344444566666
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+|. +..++.+|.+..+|. +++. ..........+.++..+++|. +..++.+|.+++
T Consensus 265 ~g~--l~v~t~~ggl~~~d~-~g~~--------------~~~~~~~~~~~~~~~~d~~g~--l~~gt~~G~~~~ 319 (330)
T 3hxj_A 265 TDT--IYFGSYDGHLYAINP-DGTE--------------KWNFETGSWIIATPVIDENGT--IYFGTRNGKFYA 319 (330)
T ss_dssp TSC--EEEECTTCEEEEECT-TSCE--------------EEEEECSSCCCSCCEECTTCC--EEEECTTSCEEE
T ss_pred CCe--EEEecCCCCEEEECC-CCcE--------------EEEEEcCCccccceEEcCCCE--EEEEcCCCeEEE
Confidence 674 678888989999985 3222 111222244567778888888 345788888876
No 243
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.57 E-value=0.00089 Score=75.14 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=94.3
Q ss_pred CCcEE-EEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLF-GSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~l-asgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
+++.+ ++...+ +.|.++|..+. +.+..+..-..+ .+.++|||++++++....+. ...+..++.|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~------~~~G~~~~~V 151 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFER------IARGKRTDYV 151 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEE------TTEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccc------cccCCCCCEE
Confidence 44544 444433 79999999985 334444333344 89999999986666531000 0000112239
Q ss_pred EEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 708 MIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
.++|..+. +.+..+.-. ......+.++|+|++++++... ++.|.+.|+.+.+. +..+..-. . ..
T Consensus 152 sviD~~t~---~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~ 223 (426)
T 3c75_H 152 EVFDPVTF---LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YH 223 (426)
T ss_dssp EEECTTTC---CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EE
T ss_pred EEEECCCC---cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--ee
Confidence 99999887 333333211 1234578999999985555433 68899999999886 55555311 1 33
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
..|+|...+++.+.||.+.+.+...
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCT
T ss_pred eccCCCcEEEEEcCCCCEEEEECCC
Confidence 4566655677777888888888744
No 244
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.57 E-value=0.0086 Score=66.32 Aligned_cols=176 Identities=9% Similarity=0.051 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH 722 (860)
Q Consensus 643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~ 722 (860)
...|+.+++..... ..+......+..++|++.+..++.+-...+. |..++..... ...
T Consensus 95 ~~~I~~i~~~~~~~----~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~---------------I~r~~~~g~~---~~~ 152 (386)
T 3v65_B 95 RIDIRQVLPHRSEY----TLLLNNLENAIALDFHHRRELVFWSDVTLDR---------------ILRANLNGSN---VEE 152 (386)
T ss_dssp BSCEEEECTTSCCC----EEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCC---EEE
T ss_pred CccceeeccCCCcE----EEEecCCCccEEEEEecCCCeEEEEeCCCCc---------------EEEEecCCCC---cEE
Confidence 45788888875322 2222234567899999877777777666666 8888877542 111
Q ss_pred eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD 801 (860)
Q Consensus 723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd 801 (860)
.+.........+++.+.+..++++-...+.|.+.++..... .......-.....++++|.+..++++-... +.|..++
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 22222234567888887776777777788899999876553 233333445678999999887766665555 7888888
Q ss_pred CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
+...... ............++|+|++..|+++-+..+.|.
T Consensus 232 ~dG~~~~--------------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 232 MDGSGRR--------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp TTSCSCE--------------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCCCcE--------------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 7642111 111112334678999988777887777766654
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.56 E-value=0.015 Score=63.33 Aligned_cols=176 Identities=9% Similarity=0.033 Sum_probs=112.8
Q ss_pred CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH 722 (860)
Q Consensus 643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~ 722 (860)
...|+..++.... ...+......+..++|++.+..++.+-...+. |..+++.... ...
T Consensus 52 ~~~I~~i~~~g~~----~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~---------------I~r~~~~g~~---~~~ 109 (349)
T 3v64_C 52 RIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDR---------------ILRANLNGSN---VEE 109 (349)
T ss_dssp BSCEEEECTTSCC----EEEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCS---CEE
T ss_pred ccceEEEeCCCCe----eEEeecCCCceEEEEEeccccEEEEEeccCCc---------------eEEEecCCCC---ceE
Confidence 3467777776532 22222234457899999888777777666666 8888887542 112
Q ss_pred eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD 801 (860)
Q Consensus 723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd 801 (860)
...........+++.+.+..++++-...+.|.+.+...... .......-.....++++|.+..++++-... +.|..++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 22222344578999987766777777788999999887653 223333345678999999777766666555 7888888
Q ss_pred CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
+........ ..........++|+|++..|+++-+..+.|.
T Consensus 189 ~dG~~~~~~--------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 189 MDGSGRRII--------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp TTSCSCEES--------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCcEEE--------------EECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 764221100 0111234678999987777777776666554
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.48 E-value=0.003 Score=67.78 Aligned_cols=190 Identities=9% Similarity=0.054 Sum_probs=108.9
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-----------------CCCCCeeEEEEcc-CCCeEE
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-----------------AHTAEVNCLSFNP-YSEYIL 683 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-----------------~h~~~V~~l~~sp-~g~~ll 683 (860)
....+++|++ +++++.++..++.|..|+..++.. ....... .....+.++++.+ ++. ++
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY 95 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence 3466888997 577677788889999998875321 1111000 0113578899997 554 44
Q ss_pred EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecC-CCCCeEEEEEcC-CCCcEEEEeeC-----------
Q psy4578 684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDA-HTAEVNCLSFNP-YSEYILATGSA----------- 749 (860)
Q Consensus 684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~-h~~~I~sl~~sp-~g~~llasgs~----------- 749 (860)
++ ...+. +..+|..++.. ..+.. ..+ .......+++.+ +|. ++++...
T Consensus 96 v~-d~~~~---------------i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 96 IV-DCYYH---------------LSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp EE-ETTTE---------------EEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred EE-ECCCC---------------EEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence 44 33333 66666554311 11111 111 123467899999 887 4554322
Q ss_pred ------CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578 750 ------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823 (860)
Q Consensus 750 ------Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~ 823 (860)
+|.|..||..++.. ..+.........++|+|+|+.++++-+.++.|..|++..... +......
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~ 226 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLV 226 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEE
T ss_pred hcccCCCceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEE
Confidence 36788899876653 112111234567999999986566666778999999875211 0011111
Q ss_pred EecCccCceEEEEEccCCCeEEEEE
Q psy4578 824 IHGGHTAKISDFSWNPNEPWVICSV 848 (860)
Q Consensus 824 ~~~~h~~~I~~i~~spdg~~Llasg 848 (860)
.. .+ ...++++++|.. .++.
T Consensus 227 ~~---~g-P~gi~~d~~G~l-~va~ 246 (322)
T 2fp8_A 227 KI---PN-PGNIKRNADGHF-WVSS 246 (322)
T ss_dssp EC---SS-EEEEEECTTSCE-EEEE
T ss_pred eC---CC-CCCeEECCCCCE-EEEe
Confidence 11 22 677888888874 4443
No 247
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.44 E-value=0.017 Score=69.98 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=110.6
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
+......+.+++|++.++.++++-...+.|+.+++..... ......+.........|++.+.++.|+++-...+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~---- 494 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT---- 494 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE----
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCe----
Confidence 3344566789999986677777777778899998874211 01122222234566789999888877777766666
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCc
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|.+.++... .....+.........|+++|.+.+|+++-..+ +.|...++..... .......-..
T Consensus 495 -----------I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~ 559 (791)
T 3m0c_C 495 -----------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW 559 (791)
T ss_dssp -----------EEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSC
T ss_pred -----------EEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCC
Confidence 888888753 11122223345678999999877666664333 7899999887654 3333333467
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.+.|++++.+..|+++=...+.|...++..
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 899999988777666656677899998865
No 248
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.44 E-value=0.029 Score=58.18 Aligned_cols=196 Identities=11% Similarity=0.149 Sum_probs=116.3
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
+.+..++|+|+++.++++...++.|...|.. +.. ...+. +-....-.|++.+++.+ +++.-.++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---~~~i~l~g~~D~EGIa~~~~g~~-~vs~E~~~~--------- 92 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---IRTIPLDFVKDLETIEYIGDNQF-VISDERDYA--------- 92 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---EEEEECSSCSSEEEEEECSTTEE-EEEETTTTE---------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---EEEEecCCCCChHHeEEeCCCEE-EEEECCCCc---------
Confidence 5699999999767778888889999999987 432 33321 12256788999887763 455434555
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeee------cCCCCCeEEEEEcCCCCcEEEEeeCCC-cEEEEeCCCCceeeEEec----
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTV------DAHTAEVNCLSFNPYSEYILATGSADK-TVALWDLRNLKLKLHSFE---- 769 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~------~~h~~~I~sl~~sp~g~~llasgs~Dg-~I~IWDl~~~~~~~~~~~---- 769 (860)
+.++++........+... ........+++|+|.+..++++.-.+. .|..|+-......+....
T Consensus 93 ------l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 93 ------IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp ------EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred ------EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 555554432110001111 123456789999999876555544443 455554100100112111
Q ss_pred ---cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec-Cc------cCceEEEEEcc
Q psy4578 770 ---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GH------TAKISDFSWNP 839 (860)
Q Consensus 770 ---~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~-~h------~~~I~~i~~sp 839 (860)
.+...+.+++++|....+++....++.+..+|.... ... ...+. +. -..--.|+|++
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~------------~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG------------EMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE------------EEECSTTGGGCSSCCCSEEEEEECT
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE------------EEEcCCccCCcccccCCCCeeEECC
Confidence 133457899999988877878778888999986642 111 11111 11 13567899999
Q ss_pred CCCeEEEEEeCCC
Q psy4578 840 NEPWVICSVSEDN 852 (860)
Q Consensus 840 dg~~Llasgs~Dg 852 (860)
+|+ |+++ ++.+
T Consensus 234 ~G~-lyIv-sE~n 244 (255)
T 3qqz_A 234 SGN-IYIV-SEPN 244 (255)
T ss_dssp TCC-EEEE-ETTT
T ss_pred CCC-EEEE-cCCc
Confidence 998 5555 4544
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.36 E-value=0.0024 Score=66.80 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=102.0
Q ss_pred eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ 705 (860)
Q Consensus 626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg 705 (860)
.+++. ++.+.++.-.++.+.++|..+. +.+.++...... ...++++|..++++. .++.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~---~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~-------------- 127 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTL---SNIKNFTHQMKD--GWGLATDGKILYGSD-GTSI-------------- 127 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTT---EEEEEEECCSSS--CCEEEECSSSEEEEC-SSSE--------------
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCC---cEEEEEECCCCC--eEEEEECCCEEEEEC-CCCe--------------
Confidence 45554 4567777778899999999874 334444321111 233556787766543 4555
Q ss_pred cEEEEeCCCCCCCCCeeeecC--C---CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC---------
Q psy4578 706 KLMIWDTRSHNVSKPSHTVDA--H---TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH--------- 771 (860)
Q Consensus 706 ~I~iwDl~~~~~~~~~~~~~~--h---~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h--------- 771 (860)
|.++|..+.+ ....+.- + -...+.+.|. +|. +++....++.|.+.|..+++. +..+...
T Consensus 128 -l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~ 200 (266)
T 2iwa_A 128 -LYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDE 200 (266)
T ss_dssp -EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHT
T ss_pred -EEEEECCCCc---EEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccc
Confidence 9999998763 3333321 1 1246788888 664 666666788999999999886 5554321
Q ss_pred ----CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578 772 ----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805 (860)
Q Consensus 772 ----~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~ 805 (860)
....+.++|+|+++.+++++...+.+...++...
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 1356899999999988999989999999998764
No 250
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.31 E-value=0.053 Score=60.24 Aligned_cols=185 Identities=9% Similarity=-0.018 Sum_probs=114.9
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC
Q psy4578 636 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH 715 (860)
Q Consensus 636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~ 715 (860)
+++.+. ...|+..++..... ..+......+..++|++.+..++.+-...+. |..+++...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~----~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~---------------I~~~~~~g~ 144 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRA 144 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC----EEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEEC---
T ss_pred eeEEec-cceeEEEccCCcce----eEeccccCcceEEeeeeccCceEEEecCCCe---------------EEEEEcccC
Confidence 444433 46888888876422 2222345678899999987777777666666 777777642
Q ss_pred CC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC-
Q psy4578 716 NV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT- 793 (860)
Q Consensus 716 ~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~- 793 (860)
.. ......+.........+++.+.+..++++-...+.|.+.|+..... .............++++|.+.+++++-..
T Consensus 145 ~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 145 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp ---CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred CCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence 11 0122223323456788999986666777777788999999987654 33333344567899999977766655533
Q ss_pred CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.+.|...++...... ......-.....|++++++..|+++-+..+.|.
T Consensus 224 ~~~I~~~~~dG~~~~--------------~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIY--------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp SCCEEEEETTSCSCE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCccE--------------EEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 478888887642211 111112245678899988777777766665554
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.24 E-value=0.018 Score=61.11 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=91.5
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC-CCceeeecccccc
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTQFEVEEEEEE 701 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~ 701 (860)
...+++|++ ++.++++-..++.|..||.... ..... .....+.++++.++|+ ++++... ++.
T Consensus 33 ~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~----~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~---------- 95 (306)
T 2p4o_A 33 FLENLASAP-DGTIFVTNHEVGEIVSITPDGN----QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI---------- 95 (306)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTTCC----EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC----------
T ss_pred CcceEEECC-CCCEEEEeCCCCeEEEECCCCc----eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc----------
Confidence 456889998 6777777767899999987652 11111 2235688999999998 4554432 221
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec---------cCC
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE---------SHK 772 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~---------~h~ 772 (860)
.|..+|..++.. ..+... ........++..+.+. ++++...+|.|..+|..++...+.... ..-
T Consensus 96 ----~v~~~d~~~g~~-~~~~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 96 ----PVVSLVKSDGTV-ETLLTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp ----EEEEEECTTSCE-EEEEEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred ----eEEEEcCCCCeE-EEEEeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 144455544421 111111 1122234555555443 465555688999999876432121111 111
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
...+.+ +|++++++++-...+.|..|++..
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 234556 888887777777889999999875
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.20 E-value=0.0048 Score=64.02 Aligned_cols=162 Identities=14% Similarity=0.207 Sum_probs=98.2
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 682 (860)
.+...+..+.++.....-..........+.++.+.+..-.++.+.+||..+. +.+.++.... .-..+ ++++..+
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~---~~~~ti~~~~-eG~gl--t~dg~~L 139 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL---RQVRSFNYDG-EGWGL--THNDQYL 139 (262)
T ss_dssp EEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-CCCCE--EECSSCE
T ss_pred eEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccC---cEEEEEECCC-CceEE--ecCCCEE
Confidence 3444455555555544434444443333335666666677899999999985 3344443322 11233 3567765
Q ss_pred EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWD 757 (860)
Q Consensus 683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWD 757 (860)
+++- .++. |.++|..+.+ .+..+.- .. ..++.+.|. +|. +++..-.++.|.+.|
T Consensus 140 ~~Sd-Gs~~---------------i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vID 198 (262)
T 3nol_A 140 IMSD-GTPV---------------LRFLDPESLT---PVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRID 198 (262)
T ss_dssp EECC-SSSE---------------EEEECTTTCS---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEC
T ss_pred EEEC-CCCe---------------EEEEcCCCCe---EEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEE
Confidence 5553 3444 9999998763 3333221 11 335567887 565 676666788999999
Q ss_pred CCCCceeeEEeccC------------CCceEEEEEcCCCCCEEEEEE
Q psy4578 758 LRNLKLKLHSFESH------------KDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 758 l~~~~~~~~~~~~h------------~~~V~~l~fsp~g~~lL~tgs 792 (860)
..+++. +..+... ....+.|+|+|+++.+++||-
T Consensus 199 p~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 199 PETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999886 4444321 235689999999987666663
No 253
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.19 E-value=0.0012 Score=72.69 Aligned_cols=76 Identities=5% Similarity=-0.038 Sum_probs=57.1
Q ss_pred EEEcCCCCcEEEEee---C-----CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEECCC
Q psy4578 734 LSFNPYSEYILATGS---A-----DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSK 804 (860)
Q Consensus 734 l~~sp~g~~llasgs---~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~ 804 (860)
++++|++..++++.. . ++.+.++|..+.+. +..+... ....+++|+|+|+++++++. .++.|.++|+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 689999997665544 2 23566999999886 5555432 25889999999998788888 699999999999
Q ss_pred CCccccc
Q psy4578 805 IGEEQST 811 (860)
Q Consensus 805 ~~~~~~~ 811 (860)
.+....+
T Consensus 347 ~kvv~~I 353 (368)
T 1mda_H 347 DQDQSSV 353 (368)
T ss_dssp CEEEEEC
T ss_pred CcEEEEE
Confidence 6654433
No 254
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.011 Score=66.37 Aligned_cols=163 Identities=11% Similarity=0.129 Sum_probs=101.0
Q ss_pred ccceeeeEeec-cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 621 LRLLIDVAWHL-LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 621 ~~~V~~v~~sp-~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
......++|+| .++.++++ ...+.|+.+|...+. +..+.........++|+++|+.++++...++.+
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~------- 203 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEADSMIITNDQNNND------- 203 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTE----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTT-------
T ss_pred CCCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCE----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcc-------
Confidence 34567899997 35555554 444889999987632 223333456688999999999766666544320
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceEEE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQV 778 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~~l 778 (860)
...+..++.. +.. .....+. ......+++++|++.+++++-..++.|..||..+... .+... +.......+
T Consensus 204 ----~~~v~~~~~~-g~~-~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gi 275 (430)
T 3tc9_A 204 ----RPNNYILTRE-SGF-KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHI 275 (430)
T ss_dssp ----SEEEEEEEGG-GTS-CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEE
T ss_pred ----cceEEEEeCC-Cce-eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeE
Confidence 0113333332 211 1111222 1234567889994444677766788999999987654 12222 122457889
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECC
Q psy4578 779 QWSPHNETILASSGTDRRLHVWDLS 803 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~Dg~I~iWdl~ 803 (860)
+|+|+|++++++-...++|..++..
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCC
Confidence 9999998767676778899998765
No 255
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.12 E-value=0.01 Score=70.97 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578 750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810 (860)
Q Consensus 750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~ 810 (860)
+|.|..||+.+++. +-....+. .+..-.+...+. +++.|+.||.++.||.++++.+..
T Consensus 454 ~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp EEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceeEEEEECCCCCe-EeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCcccee
Confidence 47899999999886 44444332 233334555665 578899999999999999765433
No 256
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.11 E-value=0.035 Score=62.43 Aligned_cols=163 Identities=9% Similarity=0.127 Sum_probs=96.7
Q ss_pred cceeeeEeecc--CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578 622 RLLIDVAWHLL--HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699 (860)
Q Consensus 622 ~~V~~v~~sp~--~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~ 699 (860)
.....++|+|+ ++.+++ +...+.|+.+|..++. +..+........+++|+++|+ ++++......
T Consensus 139 ~~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~----v~~~~~~~~~P~giavd~dG~-lyVad~~~~~-------- 204 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQY----VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSD-------- 204 (433)
T ss_dssp SCCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTE----EEEECCCCSCEEEEEECTTCC-EEEEECCSCT--------
T ss_pred CCCceEEEccccCCCEEEE-EeCCCCEEEEECCCCE----EEEeecCCCCccEEEECCCCC-EEEEcCCCCc--------
Confidence 45678999984 355444 4444899999987642 233333455689999999998 6666542211
Q ss_pred cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEE
Q psy4578 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQV 778 (860)
Q Consensus 700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l 778 (860)
....+..++.... . .....+. .......++++|++..++++-..++.|+.+|..++......+. +....-..+
T Consensus 205 ---~~~gv~~~~~~~~-~-~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 205 ---TNTGIYLFTRASG-F-TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp ---TSEEEEEECGGGT-T-CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred ---ccceEEEEECCCC-e-ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 0001222332221 1 1011111 2344567889994444566666778899999886653111111 122334579
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 779 QWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+|+|+|++++++-...++|+.++...
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 99999987666666788999988763
No 257
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.06 E-value=0.009 Score=71.36 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=41.3
Q ss_pred CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578 751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~ 811 (860)
|.|..||+.+++. +-... +...+.+..+...+.. ++.++.||.+++||..+++....+
T Consensus 457 g~l~A~D~~tG~~-~W~~~-~~~~~~~g~~~~~g~~-v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 457 GRLLAWDPVAQKA-AWSVE-HVSPWNGGTLTTAGNV-VFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTTE-EEEECTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEEeCCCCcE-EeecC-CCCCCcCcceEeCCCE-EEEECCCCcEEEEECCCCceeeee
Confidence 7899999999886 44443 3334444556666764 777899999999999997655433
No 258
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.05 E-value=0.0023 Score=76.82 Aligned_cols=169 Identities=9% Similarity=0.062 Sum_probs=101.3
Q ss_pred hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
+......+.+++|++.++.++++-...+.|+.+++...... .....+.........+++.+.+..++++-...+.
T Consensus 401 ~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~---- 476 (699)
T 1n7d_A 401 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT---- 476 (699)
T ss_dssp CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC----
T ss_pred eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe----
Confidence 33344567899999866666666566789999998751100 1111111112234567777656555555444455
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCc
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|.++++... .....+.........++++|.+.+++++-... +.|..+++..... .......-..
T Consensus 477 -----------I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~ 541 (699)
T 1n7d_A 477 -----------VSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW 541 (699)
T ss_dssp -----------EEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSS
T ss_pred -----------EEEEecCCC---ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCC
Confidence 888887643 11111122223457889999777656554333 7888888765443 1122222345
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.+.|+|+|++..|+++-+..+.|..+++..
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 678999998877777777788999999864
No 259
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.99 E-value=0.067 Score=57.40 Aligned_cols=179 Identities=9% Similarity=0.042 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH 722 (860)
Q Consensus 643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~ 722 (860)
...|+.+++..... .....+ .....+..+.|++.+..++.+-...+. |..++........ .
T Consensus 12 ~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~---------------I~r~~~~g~~~~~--~ 72 (318)
T 3sov_A 12 RRDLRLVDATNGKE-NATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEA---------------IKRTEFNKTESVQ--N 72 (318)
T ss_dssp EEEEEEEETTCTTS-CCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTE---------------EEEEETTSSSCCC--E
T ss_pred cCeEEEEECCCCce-EEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCc---------------EEEEEccCCCceE--E
Confidence 45799999876421 111111 112356789999877777777666666 8888877542111 1
Q ss_pred eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEE
Q psy4578 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWD 801 (860)
Q Consensus 723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWd 801 (860)
.+...-....++++.+.+..++++-...+.|.+++...... .............++++|.+..++++-. ..+.|...+
T Consensus 73 ~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 73 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 12222345678899886666677777788999999887543 2223344456789999997766555542 357888888
Q ss_pred CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
+...... .+ ....-.....++|++++..|+++-+..+.|.
T Consensus 152 ~dG~~~~------------~~--~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 152 MDGSSRF------------II--INSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp TTSCSCE------------EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCCeE------------EE--EECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 7642110 01 1111234578999998777787777666654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.98 E-value=0.014 Score=59.86 Aligned_cols=161 Identities=11% Similarity=0.101 Sum_probs=97.8
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 683 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll 683 (860)
+...+...+++.....-............++.++...-.++.+.+||..+. +.+.++.... .-..++ +++..++
T Consensus 45 v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~ 118 (243)
T 3mbr_X 45 VRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLY 118 (243)
T ss_dssp EEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEE
Confidence 334445555555544433444333333335677777778899999999884 4444543322 223444 5677655
Q ss_pred EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
++- .++. |.++|..+.+ .+.++.- +. ..++.+.|. +|. +++..-.+..|.+.|.
T Consensus 119 vSd-gs~~---------------l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 119 MSD-GTAV---------------IRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDP 177 (243)
T ss_dssp EEC-SSSE---------------EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECT
T ss_pred EEC-CCCe---------------EEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEEC
Confidence 554 3555 9999988863 3333321 21 345667776 455 5666656789999999
Q ss_pred CCCceeeEEecc-------------CCCceEEEEEcCCCCCEEEEEE
Q psy4578 759 RNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 759 ~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~tgs 792 (860)
++++. +..+.. .....+.|+|+|+++.+++||-
T Consensus 178 ~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 178 ASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99986 444331 1235689999999888776663
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.98 E-value=0.026 Score=60.30 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=93.6
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCCCeeEEEEcc-CCCeEEEEEeCCC-ceeeeccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNP-YSEYILATGSADK-TQFEVEEE 698 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp-~g~~llasgs~Dg-~i~~~~~~ 698 (860)
..+.++++.+.++++++ +...+.|..+|..++..........+ .......+++.+ +|. ++++..... ....+...
T Consensus 80 ~~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence 45788999863455544 44445588888765321111111111 113467899999 886 455433211 00000000
Q ss_pred -ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceE
Q psy4578 699 -EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIF 776 (860)
Q Consensus 699 -~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~ 776 (860)
......+.|..||..++. +..+.........++|+|+|..++++-+.++.|..||+..... ....+....+ ..
T Consensus 158 ~~~~~~~g~v~~~d~~~~~----~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKE----TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp HHHTCCCEEEEEEETTTTE----EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred hcccCCCceEEEEeCCCCE----EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence 001234568888876542 1111111234567999999986566666778999999875321 0111211223 78
Q ss_pred EEEEcCCCCCEEEEEEC----------CCcEEEEECC
Q psy4578 777 QVQWSPHNETILASSGT----------DRRLHVWDLS 803 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~----------Dg~I~iWdl~ 803 (860)
.+++.++|. ++++... .+.|..+|..
T Consensus 233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CeEECCCCC-EEEEecCcccccccCCCccEEEEECCC
Confidence 899999997 4555433 3567777753
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.94 E-value=0.056 Score=57.29 Aligned_cols=194 Identities=7% Similarity=0.035 Sum_probs=105.0
Q ss_pred ccceeeeEeeccCCcEEEEEeCC-C-cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADD-Q-KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~D-G-~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
.....++++.+ +++++++.... + .|..++..++... .+.... .......++..+++ .++++...++.
T Consensus 71 ~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~------- 139 (306)
T 2p4o_A 71 EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDT-QYLTADSYRGA------- 139 (306)
T ss_dssp SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSS-EEEEEETTTTE-------
T ss_pred CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCC-cEEEEECCCCe-------
Confidence 34688999998 56666555433 2 4666676664321 111111 12223444444433 34555445665
Q ss_pred ccccCCCcEEEEeCCCCC--CC---CCee--eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC-Cce-eeEEec
Q psy4578 699 EEENYDQKLMIWDTRSHN--VS---KPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-LKL-KLHSFE 769 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~--~~---~~~~--~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~-~~~-~~~~~~ 769 (860)
|.++|..++. .. .... .....-...+.+ +|++.+++++-+..+.|..||+.. +.. ....+.
T Consensus 140 --------i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~ 209 (306)
T 2p4o_A 140 --------IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV 209 (306)
T ss_dssp --------EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE
T ss_pred --------EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe
Confidence 5555544310 00 0000 001111234556 888887777777889999999875 221 011121
Q ss_pred cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc---cCCCeEEE
Q psy4578 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN---PNEPWVIC 846 (860)
Q Consensus 770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s---pdg~~Lla 846 (860)
. ......++++++|. ++++....+.|.++|... ... .+..........++++|. |++..|++
T Consensus 210 ~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G-~~~------------~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 210 E-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR-STT------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp E-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC-CEE------------EEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred c-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC-CEE------------EEeecccccCCceEEEEecccCCCCEEEE
Confidence 1 13456688999996 566666678899998642 110 011111123458899999 89888887
Q ss_pred EEeC
Q psy4578 847 SVSE 850 (860)
Q Consensus 847 sgs~ 850 (860)
+.+.
T Consensus 275 t~~~ 278 (306)
T 2p4o_A 275 VTNG 278 (306)
T ss_dssp EECT
T ss_pred ECCC
Confidence 7764
No 263
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.89 E-value=0.081 Score=56.65 Aligned_cols=170 Identities=11% Similarity=0.192 Sum_probs=103.1
Q ss_pred eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC----C--CCCeeEEEE---ccCCCeEEEEEeCCCceee
Q psy4578 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA----H--TAEVNCLSF---NPYSEYILATGSADKTQFE 694 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~g~~llasgs~Dg~i~~ 694 (860)
--+++|++.++.++++.-..|+|..|+...+.. ..+ .+.+ . ...+..+.| .|+++ ++++... +. .
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~-~~--a 88 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKN-AK--S 88 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEE-TT--T
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcc-cc--c
Confidence 347889976666666666899999999875422 111 2221 1 114689999 68865 5554331 11 0
Q ss_pred ecc-cccccCCCcEEEEeCC---CCCCCCCeeeec--C-----------CCCCeEEEEEcCCCCcEEEEeeCC-CcEEEE
Q psy4578 695 VEE-EEEENYDQKLMIWDTR---SHNVSKPSHTVD--A-----------HTAEVNCLSFNPYSEYILATGSAD-KTVALW 756 (860)
Q Consensus 695 ~~~-~~~~~~dg~I~iwDl~---~~~~~~~~~~~~--~-----------h~~~I~sl~~sp~g~~llasgs~D-g~I~IW 756 (860)
+.. ......+..+..||+. +++ .+.... . -......++..++|+ ..++++.. +.|...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~---~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSK---PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV 164 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCC---CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred ccccccccCCCCEEEEEcCCcCCCCC---EEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence 000 0111234568999998 553 222221 1 113478999999999 58888888 888888
Q ss_pred eCCCCceeeEEec----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 757 DLRNLKLKLHSFE----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 757 Dl~~~~~~~~~~~----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+............ ......+.|+++|+|..++ ....+|.+..+|+.+
T Consensus 165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li-v~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLI-AFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEE-EESSSSSEEEEECSS
T ss_pred eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEE-EEcCCCeEEEEcCCC
Confidence 7776532111111 1122467899999998644 444499999999884
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.85 E-value=0.14 Score=61.92 Aligned_cols=180 Identities=9% Similarity=-0.002 Sum_probs=109.9
Q ss_pred CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCC
Q psy4578 642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKP 720 (860)
Q Consensus 642 ~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~ 720 (860)
....|+..++..... ..+......+..++|++.+..++++-...+. |+.+++..... ...
T Consensus 402 n~~~Ir~i~l~~~~~----~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~---------------I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSY 462 (791)
T ss_dssp CBSSEEEECTTSCCC----EEEECSCSSEEEEEEETTTTEEEEEETTTTE---------------EEEEEC--------C
T ss_pred cccceeEeeccCCcc----eeeecCCCceEEEeecccCCeeEEeecccee---------------EEEEeccCCCCCcce
Confidence 345678877765322 2222334567899999877777777766666 77777764211 012
Q ss_pred eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEE
Q psy4578 721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHV 799 (860)
Q Consensus 721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~i 799 (860)
...+.........|++.+.+..|+++-...+.|.+.++..... .............|+++|.+.+|+++-... +.|..
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence 2223323455678999988877788878889999999987654 233333445689999999876666655333 77888
Q ss_pred EECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 800 Wdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
.++...... ......-....+|++++.+..|+++-...+.|.
T Consensus 542 ~~~dG~~~~--------------~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 542 GGLNGVDIY--------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp EETTSCCEE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EecCCCceE--------------EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 887642211 111122245677888876666666655555443
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.85 E-value=0.016 Score=60.20 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=98.0
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 683 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll 683 (860)
+...+..+.++.... -..........+.++.+.+..-.++.+.+||..+. +.+.++... ..-..++ +++..++
T Consensus 77 v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~ 149 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLV 149 (268)
T ss_dssp EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT---EEEEEEECS-SCCCCEE--EETTEEE
T ss_pred EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEE
Confidence 444455555554444 33344332233335677777778999999999984 444444332 2223444 4677655
Q ss_pred EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
++. .++. |.++|..+.+ .+.++.- +. ..++.+.|. +|. +++..-.++.|.+.|.
T Consensus 150 vSd-Gs~~---------------l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 150 RSD-GGTM---------------LTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDP 208 (268)
T ss_dssp EEC-SSSE---------------EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECT
T ss_pred EEC-CCCE---------------EEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeC
Confidence 554 3555 9999988863 3333321 22 245677887 564 6666667889999999
Q ss_pred CCCceeeEEecc-------------CCCceEEEEEcCCCCCEEEEEE
Q psy4578 759 RNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 759 ~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~tgs 792 (860)
.+++. +..+.. -....+.|+|+|+++.+++||-
T Consensus 209 ~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 209 ATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99886 443331 1246799999999888777663
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.76 E-value=0.21 Score=60.56 Aligned_cols=199 Identities=9% Similarity=0.107 Sum_probs=117.1
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-----cCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
...|.++...+ ++.+.+ |+.++-+..||..++... ..... .-....|.++...++|. +..|+.+|
T Consensus 214 ~~~i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G----- 283 (795)
T 4a2l_A 214 TKQIQAILQQS-PTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFND----- 283 (795)
T ss_dssp CCCEEEEEEEE-TTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSC--EEEEESSC-----
T ss_pred CCeeEEEEEcC-CCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCC--EEEEeCCh-----
Confidence 34678888775 455444 554444888998763211 11000 01235699999988887 44455556
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeec--------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD--------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 767 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~--------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~ 767 (860)
+.+||..++. ...+. -....|.++...++|. +..|+.++-|..|+..+... ..
T Consensus 284 -----------l~~~~~~~~~----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~--~~ 344 (795)
T 4a2l_A 284 -----------LNIYHEGTDS----FASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRF--KN 344 (795)
T ss_dssp -----------EEEEETTTTE----EEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSS--EE
T ss_pred -----------hheEcCCCCe----EEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccc--eE
Confidence 7777766531 11111 1235799999999887 66788888899998765442 22
Q ss_pred ecc-------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578 768 FES-------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 840 (860)
Q Consensus 768 ~~~-------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd 840 (860)
+.. ....|.++...++|. |..|+.++-|..||..+.....-.. ..... ...-....|.+++.+++
T Consensus 345 ~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~-~~~~~-----~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 345 IRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTL-QEDES-----ARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp ECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECC-C-----------CCSCSCEEEEEEETT
T ss_pred EcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEec-CCCCc-----ccCCCCccEEEEEEcCC
Confidence 211 245699999998886 6678888889999977632211000 00000 00012356889998888
Q ss_pred CCeEEEEEeCCCeEee
Q psy4578 841 EPWVICSVSEDNIMQK 856 (860)
Q Consensus 841 g~~Llasgs~Dg~IrI 856 (860)
|..+.++...+|..++
T Consensus 417 g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSIL 432 (795)
T ss_dssp TTEEEEEETTTEEEEE
T ss_pred CCEEEEEeCcCceeEE
Confidence 8722333333565554
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.73 E-value=0.24 Score=60.05 Aligned_cols=196 Identities=8% Similarity=0.085 Sum_probs=119.6
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
..|.++...+ ++. +-.|+.++-|..|+..++.. ...... .-....|.++...++|. +..|+.++-
T Consensus 310 ~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~G------ 378 (795)
T 4a2l_A 310 RSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGG------ 378 (795)
T ss_dssp SCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSC------
T ss_pred CcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCC------
Confidence 4688888886 444 45577777889998765321 111100 01235689999888887 455666644
Q ss_pred cccccCCCcEEEEeCCCCCCCCCeeeec---------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSHTVD---------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 768 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~---------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~ 768 (860)
+..||..++. ...+. -....|.++...++|. ++..|+.++.+..||..++.. ..+
T Consensus 379 ---------l~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~--~~~ 442 (795)
T 4a2l_A 379 ---------LNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQV--ENF 442 (795)
T ss_dssp ---------EEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCE--EEE
T ss_pred ---------eEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcE--EEe
Confidence 7788876542 11111 1235789999988887 356777778899999987664 233
Q ss_pred c-----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578 769 E-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 843 (860)
Q Consensus 769 ~-----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~ 843 (860)
. .....|.++...++|. |..|+. +-+..||..+........ ... . ..-....|.++..+++|.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~-~~~--~-----~~~~~~~i~~i~~d~~g~- 510 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFTTIEK-EKD--G-----TPVVSKQITTLFRDSHKR- 510 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEEECCB-CTT--C-----CBCCCCCEEEEEECTTCC-
T ss_pred ecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEEEccc-ccc--c-----cccCCceEEEEEECCCCC-
Confidence 2 1346799999998886 455665 458889977632211000 000 0 001235688999999998
Q ss_pred EEEEEeCCCeEeec
Q psy4578 844 VICSVSEDNIMQKP 857 (860)
Q Consensus 844 Llasgs~Dg~IrI~ 857 (860)
+.+++. +|..+++
T Consensus 511 lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 511 LWIGGE-EGLSVFK 523 (795)
T ss_dssp EEEEES-SCEEEEE
T ss_pred EEEEeC-CceEEEe
Confidence 344443 7776653
No 268
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.72 E-value=0.43 Score=56.18 Aligned_cols=161 Identities=4% Similarity=0.011 Sum_probs=108.9
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
...+.+++|++.++.++++-..++.|..+++..... ...+.........+++.+.+..++.+-...+.
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~---~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~--------- 103 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNR--------- 103 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE---------
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc---EEEEeCCCCCcceEEEEeCCCEEEEEECCCCE---------
Confidence 456789999987777777777889999999875321 12222222456788998877777777665565
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG-SADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
|.+.++.... ........-....+++++|...+++++- +..+.|...++..... ..+...-.....++
T Consensus 104 ------I~v~~~dG~~---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~P~Gla 172 (628)
T 4a0p_A 104 ------IEVSKLDGQH---RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLVPNVGRANGLT 172 (628)
T ss_dssp ------EEEEETTSTT---CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSCSSEEEEE
T ss_pred ------EEEEecCCCc---EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEECCCCCcceEE
Confidence 8888876531 1112223345578999999766556554 2357888888876654 22223456788999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+++++..+.++-...+.|...|+..
T Consensus 173 lD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 173 IDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTS
T ss_pred EccccCEEEEEECCCCEEEEEcCCC
Confidence 9998777666666778999999875
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.69 E-value=0.11 Score=62.68 Aligned_cols=158 Identities=8% Similarity=0.061 Sum_probs=87.1
Q ss_pred eeeeEeeccCCcEEEEEeCC-----CcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 624 LIDVAWHLLHESLFGSVADD-----QKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 624 V~~v~~sp~~~~~lasgs~D-----G~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
..+++|+|++..++++ ..| ..|.++++.++.. .....+. .......++.|+|||++++++....+
T Consensus 223 ~~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~------- 293 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE------- 293 (751)
T ss_dssp CSCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS-------
T ss_pred eeeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC-------
Confidence 4689999944444444 443 2577778766422 1112221 22345678899999998776664332
Q ss_pred cccccCCCcEEEEeCCCCCCCCC--eeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeCCCCceeeEE-ecc
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDLRNLKLKLHS-FES 770 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~--~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl~~~~~~~~~-~~~ 770 (860)
...|.++|+.++.. .. ............++.|+. |..+++.+..+ ..|..+|+.+... ... +..
T Consensus 294 ------~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~ 364 (751)
T 2xe4_A 294 ------TAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVD 364 (751)
T ss_dssp ------CEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEEC
T ss_pred ------CceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEEC
Confidence 23488889876521 12 222233344556666654 55456665544 3567777765321 122 223
Q ss_pred CCC--ceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578 771 HKD--EIFQVQWSPHNETILASSGTDRRLHVWD 801 (860)
Q Consensus 771 h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWd 801 (860)
+.. .+..+.+ .+..++++...+|..++|-
T Consensus 365 ~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 365 HSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence 333 3444444 4667788888888655543
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.65 E-value=0.044 Score=61.52 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=91.5
Q ss_pred CeeEEEEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578 669 EVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 747 (860)
Q Consensus 669 ~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg 747 (860)
....++|+| ++..++++-.. +. |+.+|.... .+..+.........++|+++|.+++++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~---------------I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HP---------------TRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EE---------------EEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-Cc---------------EEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 457788887 35554544433 44 888988764 2333333456688999999999756665
Q ss_pred eCCC----cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578 748 SADK----TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823 (860)
Q Consensus 748 s~Dg----~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~ 823 (860)
..++ .+..++..........+. .......++++|++..++++-..++.|..++....... .+.
T Consensus 198 ~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~ 264 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLF 264 (430)
T ss_dssp CCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEE
T ss_pred CCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEE
Confidence 4333 233344332211112222 12345678899944455666667889999998752210 111
Q ss_pred EecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 824 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 824 ~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
.... ......++|+|+|++++++....+.|..
T Consensus 265 ~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 265 TIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp ECSS-SSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EcCC-CCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 1111 2346789999999977777776666653
No 271
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.59 E-value=0.22 Score=58.55 Aligned_cols=168 Identities=9% Similarity=0.014 Sum_probs=107.6
Q ss_pred hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578 616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV 695 (860)
Q Consensus 616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~ 695 (860)
......+...+++|++.++.++++=...+.|..+++..... ....+...-.....+++.+.+..++.+-...+.
T Consensus 34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~---- 107 (619)
T 3s94_A 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR---- 107 (619)
T ss_dssp --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE----
T ss_pred EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCE----
Confidence 34445567889999986676777666678899998875311 112222223568899999988877777666666
Q ss_pred cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
|.+.++.... ........-.....++++|.+.++++|-- ..+.|...++..... .......-..
T Consensus 108 -----------I~v~~~dG~~---~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~ 172 (619)
T 3s94_A 108 -----------IEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYW 172 (619)
T ss_dssp -----------EEEEETTSCS---CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSS
T ss_pred -----------EEEEECCCCC---EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCC
Confidence 8888886531 11122233445678999998776666642 246777777776543 2223334456
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
.+.+++++++..++++=+..+.|...|+..
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 889999998777666666778899888865
No 272
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.58 E-value=0.0004 Score=76.61 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl 758 (860)
+. .+++++.||. |+.||..++ +.+..+.. +.+.+..+..++. ++++++.||.|+.||.
T Consensus 9 ~~-~v~~gs~dg~---------------v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 9 ET-LLFVSTLDGS---------------LHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGS 66 (369)
T ss_dssp TT-EEEEEETTSE---------------EEEEETTTC---CEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC--
T ss_pred CC-EEEEEcCCCE---------------EEEEECCCC---CEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEEC
Confidence 44 4778888888 999999887 44445444 4455555556676 4778889999999999
Q ss_pred CCCceeeEEeccCCC-ceE-EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578 759 RNLKLKLHSFESHKD-EIF-QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810 (860)
Q Consensus 759 ~~~~~~~~~~~~h~~-~V~-~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~ 810 (860)
.+++. +..+..+.. .+. +..+.. +.. +++|+.|+.++.||..+++....
T Consensus 67 ~tG~~-~w~~~~~~~~~~~~sp~~~~-~~~-v~~g~~dg~v~a~D~~tG~~~w~ 117 (369)
T 2hz6_A 67 KNNEG-LTKLPFTIPELVQASPCRSS-DGI-LYMGKKQDIWYVIDLLTGEKQQT 117 (369)
T ss_dssp ---CC-SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------
T ss_pred CCCce-eeeeeccCccccccCceEec-CCE-EEEEeCCCEEEEEECCCCcEEEE
Confidence 88765 333332211 010 011112 333 66788899999999998766543
No 273
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.52 E-value=0.12 Score=56.11 Aligned_cols=176 Identities=11% Similarity=0.110 Sum_probs=97.8
Q ss_pred CCCcEEEEEcCCCCc-ccCeeeccC-----CCCCeeEEEEcc--CCC-eEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578 642 DDQKLMIWDTRSHNV-SKPSHTVDA-----HTAEVNCLSFNP--YSE-YILATGSADKTQFEVEEEEEENYDQKLMIWDT 712 (860)
Q Consensus 642 ~DG~I~IWd~~~~~~-~~~~~~~~~-----h~~~V~~l~~sp--~g~-~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl 712 (860)
.+|.|.++|..+... ...+ .+.+ .......+.+.+ ++. +++++-... .+..|.+|++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-------------~~s~ielf~~ 146 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-------------SSSTVEVFKF 146 (355)
T ss_dssp -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-------------TCCEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-------------CCCeEEEEEE
Confidence 689999999874211 1111 1222 224566777655 343 344443331 1234778777
Q ss_pred CCCCC-CCCeeeecCC-CCCeEEEEEcCCCCcEEEEee-----------------CCCcEEEEeCCCCceeeEEeccCCC
Q psy4578 713 RSHNV-SKPSHTVDAH-TAEVNCLSFNPYSEYILATGS-----------------ADKTVALWDLRNLKLKLHSFESHKD 773 (860)
Q Consensus 713 ~~~~~-~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs-----------------~Dg~I~IWDl~~~~~~~~~~~~h~~ 773 (860)
..... ...+..+.+. -...+.+.+.++|.+ +++.. ..|.|.-+|.. . +......-.
T Consensus 147 d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~--~~~~~~~l~ 221 (355)
T 3sre_A 147 QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D--VRVVAEGFD 221 (355)
T ss_dssp ETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C--CEEEEEEES
T ss_pred ECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e--EEEeecCCc
Confidence 65321 1222333322 235688999999984 55543 12445555543 2 222222334
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeEEEEEe
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVS 849 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llasgs 849 (860)
..+.++|+||++.++++-+..+.|..|++........ .+ .+ ...+..-.++.++ +|. +.+++.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--------~~---~~-~~~g~PDGi~vD~e~G~-lwva~~ 285 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--------LR---VL-SFDTLVDNISVDPVTGD-LWVGCH 285 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--------EE---EE-ECSSEEEEEEECTTTCC-EEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--------CE---EE-eCCCCCceEEEeCCCCc-EEEEec
Confidence 5789999999998777777889999999874221110 01 11 1235677889999 588 455444
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.50 E-value=0.16 Score=61.50 Aligned_cols=199 Identities=7% Similarity=-0.027 Sum_probs=117.6
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee-------ccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT-------VDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~-------~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~ 694 (860)
..|.++...+ ++. +-.|+.++-|..|+..+... ..... .......|.++...++|. +..|+.++-
T Consensus 313 ~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~G--- 384 (781)
T 3v9f_A 313 ASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGG--- 384 (781)
T ss_dssp SCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSC---
T ss_pred CeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCc---
Confidence 4588888876 444 45567677788888765321 11100 011235689998888776 445554433
Q ss_pred ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec---cC
Q psy4578 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE---SH 771 (860)
Q Consensus 695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~---~h 771 (860)
+..||..++...............|.++...++|. |..|+.++.+..+|..++.. ..+. ..
T Consensus 385 ------------l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~ 448 (781)
T 3v9f_A 385 ------------INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKF--QIIELEKNE 448 (781)
T ss_dssp ------------EEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEE--EECCSTTTC
T ss_pred ------------EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcE--EEeccCCCC
Confidence 77777654311000000012346789999888887 55577777899999877653 2332 23
Q ss_pred CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 851 (860)
Q Consensus 772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D 851 (860)
...|.++...++|. +..|+. +-+..||..+......... .. . ......|.++...++|. +.++...+
T Consensus 449 ~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~-~~--~------~~~~~~i~~i~~d~~g~-lWigt~~~ 515 (781)
T 3v9f_A 449 LLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIHHYDT-SN--S------QLLENFVRSIAQDSEGR-FWIGTFGG 515 (781)
T ss_dssp CCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCCEEECT-TT--S------SCSCSCEEEEEECTTCC-EEEEESSS
T ss_pred CCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEEecccC-cc--c------ccccceeEEEEEcCCCC-EEEEEcCC
Confidence 46799999988886 556666 5688898776432111000 00 0 01135789999999998 45444447
Q ss_pred CeEeec
Q psy4578 852 NIMQKP 857 (860)
Q Consensus 852 g~IrI~ 857 (860)
|..+++
T Consensus 516 Gl~~~~ 521 (781)
T 3v9f_A 516 GVGIYT 521 (781)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 777764
No 275
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.39 E-value=0.044 Score=62.30 Aligned_cols=171 Identities=14% Similarity=0.153 Sum_probs=101.2
Q ss_pred cceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-------ccCCCeEEEEEeCCCcee
Q psy4578 622 RLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-------NPYSEYILATGSADKTQF 693 (860)
Q Consensus 622 ~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~-------sp~g~~llasgs~Dg~i~ 693 (860)
.....|+|+|. +++++++-...+.|++.|..++........-.........++| ++++.+++++...++..
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~- 217 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG- 217 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG-
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc-
Confidence 45678999983 5666666665577899998864322111111112235899999 99999766665544210
Q ss_pred eecccccccCCCcEEEEeCCC-CCCCC-C-eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-------CCce
Q psy4578 694 EVEEEEEENYDQKLMIWDTRS-HNVSK-P-SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-------NLKL 763 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~-~~~~~-~-~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-------~~~~ 763 (860)
.....|.+++... +.... . ...+.. .....+++.+|++.+++++-..++.|..+|.. ++..
T Consensus 218 --------~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 218 --------DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp --------GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred --------ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 0011255555333 11110 0 011111 12345788899777778788888999999987 4432
Q ss_pred -------------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578 764 -------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803 (860)
Q Consensus 764 -------------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~ 803 (860)
.+... +.....+.++|+|+|+.++++-+..++|+.++..
T Consensus 289 ~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 11111 2234568999999998655565677889986654
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.38 E-value=0.013 Score=70.08 Aligned_cols=179 Identities=9% Similarity=-0.003 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCe
Q psy4578 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPS 721 (860)
Q Consensus 643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~ 721 (860)
.+.|+..++.+.... .+......+..++|++.+..++++-...+. |+.+++..... ....
T Consensus 385 ~~~I~~id~~~~~~~----~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~---------------I~~~~~~g~~~~~~~~ 445 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSYD 445 (699)
T ss_dssp TTC-CEECTTSCCEE----CCSCCCTTCCCCEEETTTTEEEECCTTTTS---------------BEEEESCCCCC-CCCC
T ss_pred ccceEEEeCCCCcce----eeeccCcceEEEccccccCeEEEEecCCCe---------------EEEEecCCCCCCcceE
Confidence 357777777653321 111223456788999877776666555555 77888764100 0111
Q ss_pred eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEE
Q psy4578 722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVW 800 (860)
Q Consensus 722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iW 800 (860)
..+.........+++.+.+..++++-...+.|.+++...... .............++++|.+.+++++-... +.|..+
T Consensus 446 ~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 111111223456888866665677766778999999886653 222222234567889999776655554333 677777
Q ss_pred ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
++...... +. ..........|+|+|++..|+++-+..+.|.
T Consensus 525 ~~dG~~~~-------------~l-~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 525 GLNGVDIY-------------SL-VTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CSSSCCCC-------------EE-SCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eCCCCCee-------------EE-EeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 76532110 00 0111234567889888776777776666554
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.34 E-value=0.1 Score=61.76 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=69.3
Q ss_pred eeEeeccCCcEEEEEeCCC-----------cEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578 626 DVAWHLLHESLFGSVADDQ-----------KLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQF 693 (860)
Q Consensus 626 ~v~~sp~~~~~lasgs~DG-----------~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~ 693 (860)
.+++.+.++.+++.|+.++ .+.+||..++.- ..+... ..+.....++++..++. +++.|+.++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~-- 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK-- 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTT--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCC-EEEeCCCCCC--
Confidence 5566654678888887543 588999987643 222222 22334445677777777 6888875432
Q ss_pred eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CC-----CcEEEEeCCCCce
Q psy4578 694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-AD-----KTVALWDLRNLKL 763 (860)
Q Consensus 694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~D-----g~I~IWDl~~~~~ 763 (860)
.+.+||..+... ..+..+.... .-.+++..++|+ +++.|+ .+ ..+.+||..+...
T Consensus 266 ------------~v~~yd~~t~~W-~~~~~~~~~R-~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 266 ------------KTSLYDSSSDSW-IPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp ------------CEEEEEGGGTEE-EECCCCSSCC-SSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ------------ceEEecCcCCce-eECCCCCccc-cccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcc
Confidence 288888876521 1111121111 123455566777 577777 34 4688888876553
No 278
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.30 E-value=0.059 Score=64.22 Aligned_cols=87 Identities=9% Similarity=0.119 Sum_probs=51.5
Q ss_pred eEEEEccCCCeEEEEEeCCCceeeecccc------cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEE
Q psy4578 671 NCLSFNPYSEYILATGSADKTQFEVEEEE------EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLS 735 (860)
Q Consensus 671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~------~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~ 735 (860)
..++++|++.. +..++.++.. |.... .....+.|..+|..++ +.+..++. |. .....+.
T Consensus 246 ~~~~~d~~~~~-vy~~~~~~~~--w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTFDAELNT-MYVGTGNGSP--WSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp SCEEEETTTTE-EEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred cceeEcCCCCE-EEEECCCCcc--ccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcccccccCCCcEEEe
Confidence 35788888874 6666666542 22111 1112245888888887 33333321 21 1222333
Q ss_pred EcCCCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578 736 FNPYSE--YILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 736 ~sp~g~--~llasgs~Dg~I~IWDl~~~~~ 763 (860)
...+|+ .+++.++.+|.++++|.++++.
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 344662 3688999999999999999886
No 279
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.27 E-value=0.64 Score=54.66 Aligned_cols=178 Identities=9% Similarity=0.056 Sum_probs=112.3
Q ss_pred CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe
Q psy4578 642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS 721 (860)
Q Consensus 642 ~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~ 721 (860)
....|+..++.+... .....+ ..-..+..++|++.+..++.+-..++. |..+++.... ..
T Consensus 13 ~~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~---------------I~r~~~~g~~---~~ 72 (628)
T 4a0p_A 13 RRADIRRISLETNNN-NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKT---------------ISRAFMNGSA---LE 72 (628)
T ss_dssp ETTEEEEEESSCTTC-EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCS---CE
T ss_pred eCCcEEEEECCCCCc-ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCe---------------EEEEECCCCC---cE
Confidence 456899999976422 111112 123467899999988877777766676 7777776431 11
Q ss_pred eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEE-ECCCcEEEE
Q psy4578 722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVW 800 (860)
Q Consensus 722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tg-s~Dg~I~iW 800 (860)
..+.........+++.+.+..++++-...+.|.+.++.+... .......-....+++++|....++++- +..+.|...
T Consensus 73 ~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 122222245678888887776777777788999999987653 222223445678999999666655554 235677777
Q ss_pred ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
++..... ..+. .......++++++++..|+++-...+.|.
T Consensus 152 ~~dG~~~------------~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 152 AMDGSER------------TTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp ETTSCSC------------EEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eCCCCce------------EEEE---CCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 7664221 1111 12345678889888777777776666554
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.26 Score=59.55 Aligned_cols=193 Identities=9% Similarity=0.094 Sum_probs=112.8
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
..|.++...+ ++. +..|+.++-+..|+..++...............|.++...++|. +..|+.++-
T Consensus 363 ~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~G---------- 428 (781)
T 3v9f_A 363 KVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGN---------- 428 (781)
T ss_dssp SCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEE----------
T ss_pred cceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCC----------
Confidence 4588888875 444 44566566688898765321110000012346788888887776 444555443
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeec---CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC-----CC
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVD---AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH-----KD 773 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~---~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h-----~~ 773 (860)
+..+|..++. ...+. .....|.++...++|. +..|+. +.+..||..+... ....... ..
T Consensus 429 -----l~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 429 -----ISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLEN 495 (781)
T ss_dssp -----EEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCS
T ss_pred -----EEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeE-EecccCcccccccc
Confidence 7778776542 11111 2346789999888886 444555 5688999887654 2221111 36
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
.|.++...++|. +..|+.++-+..||..+.... .... . ..-....|.++..+++|. +.+ |+.+|.
T Consensus 496 ~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~-~---------~~l~~~~i~~i~~d~~g~-lWi-~T~~Gl 560 (781)
T 3v9f_A 496 FVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQLVR-KFNQ-Y---------EGFCSNTINQIYRSSKGQ-MWL-ATGEGL 560 (781)
T ss_dssp CEEEEEECTTCC--EEEEESSSCEEEECTTCCEEE-EECT-T---------TTCSCSCEEEEEECTTSC-EEE-EETTEE
T ss_pred eeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCeEE-EccC-C---------CCCCCCeeEEEEECCCCC-EEE-EECCCc
Confidence 799999999887 556776555777887653211 0000 0 001235688999999988 343 334777
Q ss_pred -Eee
Q psy4578 854 -MQK 856 (860)
Q Consensus 854 -IrI 856 (860)
.++
T Consensus 561 v~~~ 564 (781)
T 3v9f_A 561 VCFP 564 (781)
T ss_dssp EEES
T ss_pred eEEE
Confidence 554
No 281
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.17 E-value=0.061 Score=64.25 Aligned_cols=88 Identities=7% Similarity=0.103 Sum_probs=51.0
Q ss_pred EEEEccCCCeEEEEEeCCCceeeecccc----cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEEEcC
Q psy4578 672 CLSFNPYSEYILATGSADKTQFEVEEEE----EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLSFNP 738 (860)
Q Consensus 672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~----~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~~sp 738 (860)
.++++|++. ++..++.++..+...... .....+.|..||..++ +.+..++. |. ..........
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCcccccccCCCCcEEEeecc
Confidence 578888777 477777776421111110 0111235889999887 44443332 21 1222222223
Q ss_pred CCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578 739 YSE--YILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 739 ~g~--~llasgs~Dg~I~IWDl~~~~~ 763 (860)
+|. .+++.++.+|.++++|.++++.
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 443 2588899999999999999886
No 282
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.12 E-value=1.1 Score=52.42 Aligned_cols=162 Identities=8% Similarity=0.048 Sum_probs=105.8
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
...+.+++|.+.++.++++-...+.|..++...... ...+...-.....+++...+..++.+-+..+.
T Consensus 348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~---~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~--------- 415 (619)
T 3s94_A 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR--------- 415 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE---------
T ss_pred cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc---EEEEECCCCCcCceEEecccCcEEEEeCCCCc---------
Confidence 356788999986677777766788999999875321 12222223466788998777777777666666
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~ 779 (860)
|.+.++.... ........-....+++++|...++++|-. ..+.|...++..... .......-...+.++
T Consensus 416 ------I~v~~~~G~~---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~Gla 485 (619)
T 3s94_A 416 ------IEVTRLNGTM---RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLA 485 (619)
T ss_dssp ------EEEEETTSCS---CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEE
T ss_pred ------EEEEeCCCCe---EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeE
Confidence 8888876531 11122223456789999997555565542 246777777766543 222333446788999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 780 WSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 780 fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
+++++..+.++=+..+.|..+++..
T Consensus 486 lD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 486 LDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSS
T ss_pred EcccCCEEEEEECCCCEEEEEecCC
Confidence 9997776565555668899998865
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.10 E-value=0.77 Score=47.35 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=100.4
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec------cCCCCCeeEEEEccCCCeEEEEEeCCC-c
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV------DAHTAEVNCLSFNPYSEYILATGSADK-T 691 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~------~~h~~~V~~l~~sp~g~~llasgs~Dg-~ 691 (860)
......-.|++.+ ++.++++.-.++.+.++++........+... .........++|+|.++.++++.-.+. .
T Consensus 67 ~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 67 DFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp SSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred CCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 3345677888886 5666666667788999988754321111111 123455789999999987666554444 2
Q ss_pred eeeecccccccCCCcEEEEeCCCCCCCCCeeee-------cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578 692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764 (860)
Q Consensus 692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-------~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~ 764 (860)
|..|+-... ...+... ..+...+.+++++|...++++....+..+.++|.......
T Consensus 146 ---------------i~~~~g~~~--~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~ 208 (255)
T 3qqz_A 146 ---------------VYKVNGLLS--SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG 208 (255)
T ss_dssp ---------------EEEEESTTC--SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE
T ss_pred ---------------EEEEccccc--CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEE
Confidence 333331000 0011111 1133467899999988888888888899999998765332
Q ss_pred eEEecc-C------CCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578 765 LHSFES-H------KDEIFQVQWSPHNETILASSGTDRRLHVWDL 802 (860)
Q Consensus 765 ~~~~~~-h------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl 802 (860)
...+.. . -..--.|+|.++|+ |+..+..+.++.+.-
T Consensus 209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~--lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 209 EMSLTKGSRGLSHNIKQAEGVAMDASGN--IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEECSTTGGGCSSCCCSEEEEEECTTCC--EEEEETTTEEEEEEC
T ss_pred EEEcCCccCCcccccCCCCeeEECCCCC--EEEEcCCceEEEEEe
Confidence 333331 1 13678999999996 444577776666653
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.08 E-value=0.64 Score=50.15 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=109.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC----CCe--EEEEEeCCCceeeecccccccCCCc
Q psy4578 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY----SEY--ILATGSADKTQFEVEEEEEENYDQK 706 (860)
Q Consensus 633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~----g~~--llasgs~Dg~i~~~~~~~~~~~dg~ 706 (860)
...+++.....+-+.+||+ ++ +.+..+.. +.++.+..-|. |+. ++++...+ ..+++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~------------~~~n~ 100 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS------------EGKNT 100 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS------------TTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC------------CCCCe
Confidence 3456777778889999999 43 44555432 56666666652 221 22333322 00133
Q ss_pred EEEEeCCCCCCCCCeeeecC------CC-CCeEEEEE--cCC-CCcEEEEeeCCCcEEEEeCCC---Cc---eeeEEecc
Q psy4578 707 LMIWDTRSHNVSKPSHTVDA------HT-AEVNCLSF--NPY-SEYILATGSADKTVALWDLRN---LK---LKLHSFES 770 (860)
Q Consensus 707 I~iwDl~~~~~~~~~~~~~~------h~-~~I~sl~~--sp~-g~~llasgs~Dg~I~IWDl~~---~~---~~~~~~~~ 770 (860)
|.+|++.... ..+..+.. .. ..+..+|+ +|. +...+++...+|.+..|++.. +. ..++.+..
T Consensus 101 l~vf~iDp~~--~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 101 IEIYAIDGKN--GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp EEEEEECTTT--CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred EEEEEECCCC--CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 9999774221 12333311 11 55677777 774 443366677789999998832 21 12455553
Q ss_pred CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-cCc-cCceEEEEE--ccCCC-eEE
Q psy4578 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGH-TAKISDFSW--NPNEP-WVI 845 (860)
Q Consensus 771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~-~~h-~~~I~~i~~--spdg~-~Ll 845 (860)
.+.+..|...+.... |+.+-.|.-|..++...... .....+... .++ ...+..|++ .++|+ ||+
T Consensus 179 -gsq~EgcvvDd~~g~-Lyv~eEd~GIw~~da~p~~~---------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 179 -NSQTEGMAADDEYGR-LYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp -SSCEEEEEEETTTTE-EEEEETTTEEEEEECSTTSC---------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred -CCCcceEEEcCCCCe-EEEecccceEEEEeCCcCCC---------CCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 467888999987765 77888886655555443110 012233332 222 246888888 56666 788
Q ss_pred EEEeCCCeEee
Q psy4578 846 CSVSEDNIMQK 856 (860)
Q Consensus 846 asgs~Dg~IrI 856 (860)
+++-.++.+.+
T Consensus 248 vSsQG~~s~~V 258 (355)
T 3amr_A 248 ASSQGNSSYAI 258 (355)
T ss_dssp EEEGGGTEEEE
T ss_pred EEcCCCCEEEE
Confidence 88866655543
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.89 E-value=0.066 Score=60.88 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=95.0
Q ss_pred CeeEEEEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----CCCCeEEEEE-------
Q psy4578 669 EVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----HTAEVNCLSF------- 736 (860)
Q Consensus 669 ~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h~~~I~sl~~------- 736 (860)
....++|+| ++..|+++....+. |++.|...+. +..+.. .......++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~---------------i~~ID~~~~~----v~~l~~~~~~~~~~p~~ia~~~~~~~~ 200 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKA---------------IQLIDLKNRM----LSSPLNINTIPTNRIRSIAFNKKIEGY 200 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEE---------------EEEEETTTTE----EEEEECCTTSSCSBEEEEEECCCBTTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCe---------------EEEEECCCCE----EEEEEccCccccCCCcEEEEeeccccc
Confidence 467899998 45656666554344 8888887642 222221 1235789999
Q ss_pred cCCCCcEEEEeeCCCc------EEEEeCCC-Ccee----eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC--
Q psy4578 737 NPYSEYILATGSADKT------VALWDLRN-LKLK----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-- 803 (860)
Q Consensus 737 sp~g~~llasgs~Dg~------I~IWDl~~-~~~~----~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~-- 803 (860)
+++|.+++++...++. |.+++... +... ...+.. -.....++.+|++.+++++-..++.|..+|+.
T Consensus 201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 9999975655544423 66776443 1210 012211 12345678899777777777788899999987
Q ss_pred -----CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578 804 -----KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 804 -----~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI 856 (860)
+............+....+... +.......++|+|+|++++++-+..+.|+.
T Consensus 280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 280 FKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp HHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 3222000000000000112222 223446789999999977777776666653
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.84 E-value=0.61 Score=49.86 Aligned_cols=190 Identities=10% Similarity=0.055 Sum_probs=97.8
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
+.+..+.+.+ ++.+++++ .+|.| |-..+ +.....+. ......+..+.+.+++. +++++ .+|.+
T Consensus 122 ~~~~~i~~~~-~~~~~~~~-~~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~-~~~~g-~~G~~-------- 185 (327)
T 2xbg_A 122 GSPRLIKALG-NGSAEMIT-NVGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSGE-YVAVS-SRGSF-------- 185 (327)
T ss_dssp SCEEEEEEEE-TTEEEEEE-TTCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTSC-EEEEE-TTSSE--------
T ss_pred CCeEEEEEEC-CCCEEEEe-CCccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCCc-EEEEE-CCCcE--------
Confidence 4467777765 45555555 45643 33332 32222222 24456788999999877 35555 44441
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---CCCceEE
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQ 777 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~~ 777 (860)
.+-+|- .+.....+ -......+..+.+.+++. ++ .++.+|.+++++...+......-.. +...+.+
T Consensus 186 ------~~S~d~-gG~tW~~~--~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 186 ------YSTWEP-GQTAWEPH--NRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp ------EEEECT-TCSSCEEE--ECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred ------EEEeCC-CCCceeEC--CCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 222221 01111222 123456788999999887 34 4556788887753323221111111 2235889
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
+.+.+++. ++.++.+|.+ .+..+.+..-.... ........+.++.|.+++. ++ .++.+|.|
T Consensus 255 v~~~~~~~--~~~~g~~g~i-~~S~DgG~tW~~~~-----------~~~~~~~~~~~v~~~~~~~-~~-~~G~~G~i 315 (327)
T 2xbg_A 255 LAYRTPNE--VWLAGGAGAL-LCSQDGGQTWQQDV-----------DVKKVPSNFYKILFFSPDQ-GF-ILGQKGIL 315 (327)
T ss_dssp EEESSSSC--EEEEESTTCE-EEESSTTSSCEECG-----------GGTTSSSCCCEEEEEETTE-EE-EECSTTEE
T ss_pred EEecCCCE--EEEEeCCCeE-EEeCCCCcccEEcC-----------ccCCCCCCeEEEEEECCCc-eE-EEcCCceE
Confidence 99998775 3445557776 34444332211110 0011234577888876655 44 44555554
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.74 E-value=1.2 Score=47.45 Aligned_cols=192 Identities=8% Similarity=-0.004 Sum_probs=97.6
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
..+.+|.+.+ +..+++ +.+|.|.. ....+.....+.....+.+.+..+.+.+++. +++++ .+|.
T Consensus 80 ~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~---------- 143 (327)
T 2xbg_A 80 YRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGA---------- 143 (327)
T ss_dssp CEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCC----------
T ss_pred ccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCcc----------
Confidence 3688898875 445554 45564433 2222333332222112345577888776665 45555 3454
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE-EeCCCCceeeEEeccCCCceEEEEE
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQVQW 780 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I-WDl~~~~~~~~~~~~h~~~V~~l~f 780 (860)
|.. ....+.....+ ...+...+.++.+.|++. +++++. +|.+.. +|-. +......-......+..+.+
T Consensus 144 -----v~~-S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~ 212 (327)
T 2xbg_A 144 -----IYR-TKDSGKNWQAL--VQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGF 212 (327)
T ss_dssp -----EEE-ESSTTSSEEEE--ECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEE
T ss_pred -----EEE-EcCCCCCCEEe--ecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEE
Confidence 211 11112111111 123455788999999887 465554 455443 4421 22111122345567889999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
.+++. ++.++.+|.+++.+...+..-..... . . ..+...+.++++.+++. +++++. ++.+
T Consensus 213 ~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~---~--~-----~~~~~~~~~v~~~~~~~-~~~~g~-~g~i 272 (327)
T 2xbg_A 213 TPDGR--LWMIVNGGKIAFSDPDNSENWGELLS---P--L-----RRNSVGFLDLAYRTPNE-VWLAGG-AGAL 272 (327)
T ss_dssp CTTSC--EEEEETTTEEEEEETTEEEEECCCBC---T--T-----SSCCSCEEEEEESSSSC-EEEEES-TTCE
T ss_pred CCCCC--EEEEeCCceEEEecCCCCCeeEeccC---C--c-----ccCCcceEEEEecCCCE-EEEEeC-CCeE
Confidence 99886 45666788887764221111111000 0 0 01123578888988777 455544 4444
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.63 E-value=0.62 Score=52.12 Aligned_cols=222 Identities=7% Similarity=0.011 Sum_probs=113.0
Q ss_pred hhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---Cc-EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578 611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QK-LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 686 (860)
Q Consensus 611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~-I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg 686 (860)
...+..+........+++|++ +++++++.... .. +...+...+ . .....+. .......++++|++..++++.
T Consensus 171 ~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~-~-~~~~~~~-~~~~P~giavd~~~G~lyv~d 246 (433)
T 4hw6_A 171 NQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG-F-TERLSLC-NARGAKTCAVHPQNGKIYYTR 246 (433)
T ss_dssp TTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT-T-CCEEEEE-ECSSBCCCEECTTTCCEEECB
T ss_pred CCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC-e-ecccccc-ccCCCCEEEEeCCCCeEEEEE
Confidence 344444444556688999998 55555554321 12 233332221 1 1001111 223456788888444455555
Q ss_pred eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--Cce-
Q psy4578 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKL- 763 (860)
Q Consensus 687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~~- 763 (860)
..++. |+.+|..++.....+... +....-..++|+|++.+++++-...+.|+.+|... +..
T Consensus 247 ~~~~~---------------V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 247 YHHAM---------------ISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA 310 (433)
T ss_dssp TTCSE---------------EEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred CCCCE---------------EEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC
Confidence 45555 777777654210111111 11223357999999987677777788999988653 211
Q ss_pred eeEEeccC---------------CCceEEEEE---------cCCCCCEEEEEECCCcEEEEECCCCCcccccccccC--C
Q psy4578 764 KLHSFESH---------------KDEIFQVQW---------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED--G 817 (860)
Q Consensus 764 ~~~~~~~h---------------~~~V~~l~f---------sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~--~ 817 (860)
....+.+. -.....+++ .++|. ++++-...++|+.++.. + ....+..... .
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~-G-~v~t~~G~g~~~~ 387 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE-G-RVTTYAGRGNSRE 387 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTT-S-EEEEEECCCTTCS
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCC-C-CEEEEEeCCCCCc
Confidence 01122111 123667888 66665 45565667889888742 2 1111111000 0
Q ss_pred CCccEE--EecCccCceEEEEEc-cCCCeEEEEEeCCCeEee
Q psy4578 818 PPELLF--IHGGHTAKISDFSWN-PNEPWVICSVSEDNIMQK 856 (860)
Q Consensus 818 ~~~~i~--~~~~h~~~I~~i~~s-pdg~~Llasgs~Dg~IrI 856 (860)
....-. .....-....+|+++ ++|. |+++-..++.|+.
T Consensus 388 ~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 388 WGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRK 428 (433)
T ss_dssp SCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEE
T ss_pred cccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEE
Confidence 000000 000112346789999 5555 7777777777763
No 289
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.63 E-value=0.91 Score=50.07 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=88.0
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---cc-----
Q psy4578 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---EN----- 702 (860)
Q Consensus 633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---~~----- 702 (860)
++.-++.+- ++.||.-++..+...+.+.. .. .-..+..+..+|+|.+ +|..+..+ |.+..+-.. ..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~-~~~i~f~~i~qlvlSpsG~l-LAl~g~~~-V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNF-SRHLVLDDTFHVISSTSGDL-LCLFNDNE-IFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEEC-TTTCCCCTTCEEEECTTSSE-EEEECSSE-EEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEec-CcccccCceeEEEECCCCCE-EEEecCCe-EEEEEecCccccCcccccc
Confidence 444444433 46788888875432222222 11 1236788999999996 45444333 222222211 00
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc--EEEEeeCCCcEEEEeCCCCc-eeeEEec---------c
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWDLRNLK-LKLHSFE---------S 770 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~--llasgs~Dg~I~IWDl~~~~-~~~~~~~---------~ 770 (860)
..-+++-|.+...+ ......|..+.|||-+.. .|++=..|+.|++||+.... .+. .+. .
T Consensus 107 ~~~q~~ty~l~~~~--------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~ 177 (452)
T 3pbp_A 107 DAFQIFHYSIDEEE--------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDA 177 (452)
T ss_dssp HTTEEEEEEGGGCC----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCS
T ss_pred cccceeEEEcCCcc--------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCc
Confidence 01123444443210 113578999999996532 47788899999999998632 222 222 2
Q ss_pred CCCceEEEEEcCCCCCEEEEEE--CCCcEEEE
Q psy4578 771 HKDEIFQVQWSPHNETILASSG--TDRRLHVW 800 (860)
Q Consensus 771 h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iW 800 (860)
....|.+++|.++|-. |...+ .+|.|+-.
T Consensus 178 ~~~ev~S~~Fg~~~lT-LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 178 RVNDITDLEFSKDGLT-LYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCCCEEEEEECTTSSC-EEEEECTTSCEEEEE
T ss_pred ccceEEEEEEcCCCcE-EEEEecCCCCCEEEE
Confidence 3357889999997765 66655 77888764
No 290
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.56 E-value=0.17 Score=54.87 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=81.3
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC--C-----CeeEEEEcc--CCCeEEEEEeCCCceeeecccccccCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT--A-----EVNCLSFNP--YSEYILATGSADKTQFEVEEEEEENYD 704 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~--~-----~V~~l~~sp--~g~~llasgs~Dg~i~~~~~~~~~~~d 704 (860)
+..++.++.+|.+..+|..+++. ........ + .+..+.-.| .+.. +..++.++.
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~~g~------------- 250 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAYNGN------------- 250 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCE---EEEEECCC-----------CCCCCCEEETTE-EEEECTTSC-------------
T ss_pred CCEEEEEcCCCEEEEEECCCCcE---EEEEecccCCCCcccccccccCCCcEEECCE-EEEEecCcE-------------
Confidence 34567788899999999988643 22211110 0 000000011 1333 555666666
Q ss_pred CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEEEEcCC
Q psy4578 705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPH 783 (860)
Q Consensus 705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp~ 783 (860)
+..+|..++ +.+.... .....++... +.. +..++.+|.+..+|..+++. ..... .....+......
T Consensus 251 --l~~~d~~tG---~~~w~~~--~~~~~~~~~~--~~~-l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~-- 317 (376)
T 3q7m_A 251 --LTALDLRSG---QIMWKRE--LGSVNDFIVD--GNR-IYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY-- 317 (376)
T ss_dssp --EEEEETTTC---CEEEEEC--CCCEEEEEEE--TTE-EEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE--
T ss_pred --EEEEECCCC---cEEeecc--CCCCCCceEE--CCE-EEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE--
Confidence 888888776 3333322 2234444443 443 66778899999999998876 43333 112222222222
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcc
Q psy4578 784 NETILASSGTDRRLHVWDLSKIGEE 808 (860)
Q Consensus 784 g~~lL~tgs~Dg~I~iWdl~~~~~~ 808 (860)
+.. ++.++.+|.++.+|..+++..
T Consensus 318 ~~~-l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 318 NGN-LVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TTE-EEEECTTSEEEEEETTTCCEE
T ss_pred CCE-EEEEeCCCeEEEEECCCCcEE
Confidence 333 778889999999999886543
No 291
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.49 E-value=0.25 Score=58.73 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578 750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~ 811 (860)
+|.|..||..+++. +-....+ .......+...+. +++.++.||.++.||.++++.....
T Consensus 437 ~g~l~A~D~~tG~~-~W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 437 SGALLAWDPVKQKA-AWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp EEEEEEEETTTTEE-EEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEeCCCCcE-EEEccCC-CCCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEe
Confidence 48899999999886 3333322 2223333444565 4778899999999999987655433
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.22 E-value=0.38 Score=51.49 Aligned_cols=164 Identities=10% Similarity=0.118 Sum_probs=95.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----C--CCCeEEEEE---
Q psy4578 666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----H--TAEVNCLSF--- 736 (860)
Q Consensus 666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h--~~~I~sl~~--- 736 (860)
...-..++.|++....++++.-..++ |..||...+.. ..+ .+.+ . ...+.++.|
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~---------------V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~ 73 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGR---------------IEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTH 73 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTE---------------EEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSS
T ss_pred cccCCcCccCcCCCCEEEEEeccCCE---------------EEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEecc
Confidence 34445678998876655555557787 88887764311 111 2221 1 113579999
Q ss_pred cCCCCcEEEEee-------------CCCcEEEEeCC---CCcee-eEEecc-----------CCCceEEEEEcCCCCCEE
Q psy4578 737 NPYSEYILATGS-------------ADKTVALWDLR---NLKLK-LHSFES-----------HKDEIFQVQWSPHNETIL 788 (860)
Q Consensus 737 sp~g~~llasgs-------------~Dg~I~IWDl~---~~~~~-~~~~~~-----------h~~~V~~l~fsp~g~~lL 788 (860)
.|++. ++++.. .+..+..||+. +++.. ...+.. -......++..++|+. .
T Consensus 74 D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-Y 151 (334)
T 2p9w_A 74 DNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-Y 151 (334)
T ss_dssp SSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-E
T ss_pred CCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-E
Confidence 68866 565433 26779999998 55541 222221 1134889999999984 7
Q ss_pred EEEECC-CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578 789 ASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP 857 (860)
Q Consensus 789 ~tgs~D-g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~ 857 (860)
++++.. +.|..++.... ....+... .. ........+.|+++|+|..|++..+.....+++
T Consensus 152 Vt~s~~~~~I~rV~pdG~-~~~~~~~~-~~-------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGK-TVSTFAWE-SG-------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEESSCEEEEECTTSC-CEEEEEEC-CC-------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred EeCCCCCCeEEEEeCCCC-EEeeeeec-CC-------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 788877 77776665532 11111000 00 011123467899999999888777744444443
No 293
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.84 E-value=0.25 Score=53.54 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=79.9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~ 713 (860)
+..++.++.+|.+..+|..+++. +.... .....++... +.. +.+++.++. +..+|..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~---~w~~~--~~~~~~~~~~--~~~-l~~~~~~g~---------------l~~~d~~ 295 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQI---MWKRE--LGSVNDFIVD--GNR-IYLVDQNDR---------------VMALTID 295 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCE---EEEEC--CCCEEEEEEE--TTE-EEEEETTCC---------------EEEEETT
T ss_pred CCEEEEEecCcEEEEEECCCCcE---Eeecc--CCCCCCceEE--CCE-EEEEcCCCe---------------EEEEECC
Confidence 45667778899999999988643 22221 2233444443 444 556666776 8888887
Q ss_pred CCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578 714 SHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 714 ~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs 792 (860)
++ +.+..... ....+...... +. .++.++.+|.+.++|..+++. +.........+.+.....++ . |+.++
T Consensus 296 tG---~~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~~~~-~-l~v~~ 366 (376)
T 3q7m_A 296 GG---VTLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVAADG-K-LLIQA 366 (376)
T ss_dssp TC---CEEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEEETT-E-EEEEB
T ss_pred CC---cEEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEEECC-E-EEEEe
Confidence 76 33333221 11222222232 34 377888899999999999886 44444322333221111234 3 67888
Q ss_pred CCCcEEEEE
Q psy4578 793 TDRRLHVWD 801 (860)
Q Consensus 793 ~Dg~I~iWd 801 (860)
.+|.|+.|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999987
No 294
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.68 E-value=0.53 Score=54.73 Aligned_cols=59 Identities=14% Similarity=-0.060 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810 (860)
Q Consensus 749 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~ 810 (860)
.+|.|..||..+++. +-.+.. ...+.+..+...+.. ++.++.||.++.||.++++....
T Consensus 442 ~~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t~gg~-v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKGGL-VWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCCE-EEEecC-CCCccceeEEECCCE-EEEEcCCCeEEEEECCCCCEEEE
Confidence 357899999998876 333332 122222222233443 66788999999999998766543
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.94 E-value=2.2 Score=49.54 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578 750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~ 811 (860)
+|.|..||+.+++. +-..... ..+..-.....+. +++.|+.||.++.||.++++...+.
T Consensus 465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEe
Confidence 68899999998876 3333321 1111111112344 4677999999999999997665443
No 296
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.81 E-value=4.1 Score=44.92 Aligned_cols=140 Identities=11% Similarity=0.166 Sum_probs=84.7
Q ss_pred EEEEeCCCCCCCCCeeeecCC----CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------eeEEecc-
Q psy4578 707 LMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------KLHSFES- 770 (860)
Q Consensus 707 I~iwDl~~~~~~~~~~~~~~h----~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------~~~~~~~- 770 (860)
||.-++... ...+.+... -..|..+..+|+|.+ +|..+ +..|.|-.+..+.. ..+.+.-
T Consensus 43 iR~~~i~~~---~~Yk~L~~~~~i~f~~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 43 IRWYNVLTD---SLYHSLNFSRHLVLDDTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp EEEEETTTC---SSCEEEECTTTCCCCTTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred EEEEECCCC---CcceEEecCcccccCceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 776677643 223333222 236788999999995 55543 45788888763221 1122221
Q ss_pred -----CCCceEEEEEcCCCCC--EEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578 771 -----HKDEIFQVQWSPHNET--ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 843 (860)
Q Consensus 771 -----h~~~V~~l~fsp~g~~--lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~ 843 (860)
...+|..+.|+|-|.. -|++-..|+.|++||+.........-. . ....+........|.+++|..+|-.
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k-~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K-PNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C-CCSEEESCSSCCCEEEEEECTTSSC
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c-cccccCCCcccceEEEEEEcCCCcE
Confidence 2567999999997542 588899999999999997322111000 0 0112233344578999999998876
Q ss_pred EEEEE-eCCCeEe
Q psy4578 844 VICSV-SEDNIMQ 855 (860)
Q Consensus 844 Llasg-s~Dg~Ir 855 (860)
|.+.. +.+|-|.
T Consensus 194 LYvl~~t~~GDIY 206 (452)
T 3pbp_A 194 LYCLNTTEGGDIF 206 (452)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEecCCCCCEE
Confidence 55433 3555554
No 297
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.53 E-value=3 Score=43.27 Aligned_cols=154 Identities=10% Similarity=0.121 Sum_probs=78.0
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578 633 HESLFGSVADD-----QKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ 705 (860)
Q Consensus 633 ~~~~lasgs~D-----G~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg 705 (860)
++.+++.|+.+ ..+.+||..+... ...+..+........++.+ +..+++.|+.++. ....
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~----------~~~~ 128 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGS----------RRHT 128 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSS----------CBCC
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCC----------cccc
Confidence 56777777755 3588999877531 1222222111122222222 3346777766543 1234
Q ss_pred cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEE
Q psy4578 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQ 779 (860)
Q Consensus 706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~ 779 (860)
.+.+||..+... ..+..+........++.+ ++. +++.|+.+ ..+.+||..+...... .+........++.
T Consensus 129 ~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 204 (301)
T 2vpj_A 129 SMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL 204 (301)
T ss_dssp EEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred eEEEEcCCCCeE-EECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE
Confidence 588899876532 222222211222223333 444 67777754 4588999988765211 1111111122222
Q ss_pred EcCCCCCEEEEEECC-----CcEEEEECCCCC
Q psy4578 780 WSPHNETILASSGTD-----RRLHVWDLSKIG 806 (860)
Q Consensus 780 fsp~g~~lL~tgs~D-----g~I~iWdl~~~~ 806 (860)
+ ++ .+++.||.+ ..+.+||+.+..
T Consensus 205 ~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 205 L--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp E--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence 2 34 467777754 468899987743
No 298
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.42 E-value=0.53 Score=55.81 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=49.9
Q ss_pred EEEEccCCCeEEEEEeCCCceeeecccc----cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEEEcC
Q psy4578 672 CLSFNPYSEYILATGSADKTQFEVEEEE----EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLSFNP 738 (860)
Q Consensus 672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~----~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~~sp 738 (860)
.+++.|++. ++..++.++..+...... .....+.|..+|..++ +.+..++. |. ..........
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccCCCCcEEEEecc
Confidence 467888776 466776665421111110 0112235888888887 33333322 22 2222233333
Q ss_pred CCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578 739 YSE--YILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 739 ~g~--~llasgs~Dg~I~IWDl~~~~~ 763 (860)
+|. .+++.++.+|.++++|..+++.
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 554 2488899999999999999886
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.23 E-value=12 Score=41.33 Aligned_cols=188 Identities=12% Similarity=0.176 Sum_probs=115.1
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC----CCCeeEEEEccC
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPY 678 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h----~~~V~~l~~sp~ 678 (860)
.+.+.|.........+.-..+|.-=.|-. .+.++-.+ +..|.-|++... ..+...+..| ...|.....+++
T Consensus 87 ~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 87 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred eEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCC--CCchhheecchhcccceEEEEEECCC
Confidence 34455555555555555556777777874 45555544 458999999753 3455555444 356777788899
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCC---CcE
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSAD---KTV 753 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~D---g~I 753 (860)
.++++++|-..+. +.-.|.+.+|..+. +....+.||.+....+...-+ ...+++-+... +.+
T Consensus 162 ~kW~~l~GI~~~~---------~~v~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 162 QKWLLLTGISAQQ---------NRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp SSEEEEEEEEEET---------TEEEEEEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred CCeEEEEeecccC---------CcccceEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 9998877742111 12346799999886 345667788665544444321 12345555443 789
Q ss_pred EEEeCCCC---ceee--EE----ec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578 754 ALWDLRNL---KLKL--HS----FE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 809 (860)
Q Consensus 754 ~IWDl~~~---~~~~--~~----~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~ 809 (860)
+|-++... ..+. .. +. ....-..++..++.-. ++..-+.-|.|++||+.++.+..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeee
Confidence 99998543 1100 00 11 1233445677777665 57788899999999999976653
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.22 E-value=10 Score=40.37 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=112.4
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC----CCCeeEEEEccC
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPY 678 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h----~~~V~~l~~sp~ 678 (860)
.+.+.|.+.......+.-..+|.-=.|-. .+.|+-.+. ..|.-|++... ..+...+..| ...|.....+++
T Consensus 88 ~LQiFnletK~klks~~~~e~VvfWkWis--~~~L~lVT~-taVyHWs~~~~--s~P~kvFdR~~~L~~~QIInY~~d~~ 162 (365)
T 2xzh_A 88 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK 162 (365)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECS--SSEEEEEES-SEEEEEESSTT--CCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred eEEEechHHhhhhcceecCCccEEEEecC--CCeEEEEcC-CcEEEEcccCC--CCCceeeecchhcccceEEEEEECCC
Confidence 35555665555555555556777777764 455555443 58999999763 3445544444 356777778899
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc--CCCCcEEEEeeC---CCcE
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSA---DKTV 753 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s--p~g~~llasgs~---Dg~I 753 (860)
.++++++|-.... +.-.|.+.+|..+. +....+.||.+....+... +....+++-+.. .+.+
T Consensus 163 ~kW~~l~GI~~~~---------~~v~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 163 QKWLLLTGISAQQ---------NRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp SCEEEEEEEEEET---------TEEEEEEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEEeEeccC---------CccceeEEEEeecc----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 9988887752111 12346799999886 3445677776544333332 112224444433 2588
Q ss_pred EEEeCCCC---cee-----eEEec---cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578 754 ALWDLRNL---KLK-----LHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 809 (860)
Q Consensus 754 ~IWDl~~~---~~~-----~~~~~---~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~ 809 (860)
+|-++... ..+ +..+- ....-..++..++.-. ++..-+.-|.|++||+.++.+..
T Consensus 230 hIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 230 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEE
Confidence 99988543 110 11111 1233445677776655 57788899999999999976653
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.20 E-value=5.9 Score=42.55 Aligned_cols=215 Identities=8% Similarity=0.030 Sum_probs=102.2
Q ss_pred ccceeeeEeecc---CCcEEEEEeCC-----CcEEEEEcCCCCcc--c-Ceeecc---CCCCCeeEEEEccCCCeEEEEE
Q psy4578 621 LRLLIDVAWHLL---HESLFGSVADD-----QKLMIWDTRSHNVS--K-PSHTVD---AHTAEVNCLSFNPYSEYILATG 686 (860)
Q Consensus 621 ~~~V~~v~~sp~---~~~~lasgs~D-----G~I~IWd~~~~~~~--~-~~~~~~---~h~~~V~~l~~sp~g~~llasg 686 (860)
......++|+|+ ++.++++-+.+ +.|..|+...+... + .+..+. +.......++|.|+|. ++++.
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 356789999984 35555554433 57888887643110 1 111122 1112346899999995 55554
Q ss_pred eCCCceeeecccccccCCCcEEEEeCCCCC-----------CCCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcE-
Q psy4578 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHN-----------VSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTV- 753 (860)
Q Consensus 687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~-----------~~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I- 753 (860)
+..+.. . .........|.|.-++....- ....+. ..++ .....++|+| ++. ++++-...+.+
T Consensus 153 G~~~~~-~-~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~ 227 (352)
T 2ism_A 153 GEVYER-E-LAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQ 227 (352)
T ss_dssp CCTTCG-G-GGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECC-SEECCCEECTTTCC-EEEEEECC----
T ss_pred CCCCCC-c-cccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcC-CCcccEEEECCCCC-EEEEEcCCCCCC
Confidence 433321 0 000011233556666654310 001111 1223 3356789999 555 45443322221
Q ss_pred -----EEEeCCCCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578 754 -----ALWDLRNLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 754 -----~IWDl~~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~ 811 (860)
.|.-+..+. .++..+. +......++| .+|. ++++.-..+.|...++.........
T Consensus 228 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~ 304 (352)
T 2ism_A 228 GYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRV 304 (352)
T ss_dssp --CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEE
T ss_pred CCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceee
Confidence 122222221 1233332 2334567777 4564 4555556677777776542210000
Q ss_pred ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
......+ .-...+.++++.|||...+++.+.+|
T Consensus 305 -------~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 305 -------LRVETAL-SGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp -------EEEEEEE-ESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred -------cchheec-ccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 0001111 12367899999999985444444443
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.80 E-value=2.5 Score=45.81 Aligned_cols=135 Identities=8% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecC-----CCCCeEEEEEcC--CCC-cEEEEeeC--CCcEEEEeCCCCce---eeEEec
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDA-----HTAEVNCLSFNP--YSE-YILATGSA--DKTVALWDLRNLKL---KLHSFE 769 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~-----h~~~I~sl~~sp--~g~-~llasgs~--Dg~I~IWDl~~~~~---~~~~~~ 769 (860)
.+|.|.++|..+.........+.+ .......+.+.+ ++. +++++-.. +++|.+|++..... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 456699999874321111112222 223566777765 343 45555444 56788887765322 123333
Q ss_pred cC-CCceEEEEEcCCCCCEEEEEE---C--------------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578 770 SH-KDEIFQVQWSPHNETILASSG---T--------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK 831 (860)
Q Consensus 770 ~h-~~~V~~l~fsp~g~~lL~tgs---~--------------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~ 831 (860)
+. -...+++++.++|.+ +++.. . .|.+.-+|.. + +......-..
T Consensus 161 g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---------------~~~~~~~l~~ 222 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---------------VRVVAEGFDF 222 (355)
T ss_dssp CTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---------------CEEEEEEESS
T ss_pred cCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e---------------EEEeecCCcc
Confidence 32 246899999999973 55543 1 1333333321 0 0111112244
Q ss_pred eEEEEEccCCCeEEEEEeCCCeEe
Q psy4578 832 ISDFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 832 I~~i~~spdg~~Llasgs~Dg~Ir 855 (860)
-+.++|+||+++++++-+..+.|.
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~ 246 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIH 246 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEE
T ss_pred cCcceECCCCCEEEEEeCCCCeEE
Confidence 688999999998888887766665
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.56 E-value=10 Score=40.83 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=108.0
Q ss_pred cceeeeEeecc---CCcEEEEEeC---C----CcEEEEEcCCCC--c--ccCe-eecc-CCCCCeeEEEEccCCCeEEEE
Q psy4578 622 RLLIDVAWHLL---HESLFGSVAD---D----QKLMIWDTRSHN--V--SKPS-HTVD-AHTAEVNCLSFNPYSEYILAT 685 (860)
Q Consensus 622 ~~V~~v~~sp~---~~~~lasgs~---D----G~I~IWd~~~~~--~--~~~~-~~~~-~h~~~V~~l~~sp~g~~llas 685 (860)
.....|+++|+ ++.++++-+. + +.|..|+..... . .+.+ ..+. ........++|.|+|. ++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEE
Confidence 46789999985 4565555442 3 567777765431 0 0111 1111 1112346799999997 5555
Q ss_pred EeCCCceeeecccccccCCCcEEEEeCCCCCC------CCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeC-CC--cEEE
Q psy4578 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNV------SKPSHTVDAHTAEVNCLSFNP-YSEYILATGSA-DK--TVAL 755 (860)
Q Consensus 686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~------~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~-Dg--~I~I 755 (860)
.+..+.. ..........|+|.-++....-. ...+. ..++ .....++|+| +|. ++++-.. ++ .|.+
T Consensus 152 ~G~~~~~--~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~ 226 (354)
T 3a9g_A 152 TGDAADP--RLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNI 226 (354)
T ss_dssp CCCTTCG--GGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEE
T ss_pred ECCCCCC--ccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEE
Confidence 4433221 00000112345566665542100 01111 1233 3356899999 555 4444322 21 1333
Q ss_pred EeCCC---------------CceeeEEeccCCCceEEEEEc-------CCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578 756 WDLRN---------------LKLKLHSFESHKDEIFQVQWS-------PHNETILASSGTDRRLHVWDLSKIGEEQSTED 813 (860)
Q Consensus 756 WDl~~---------------~~~~~~~~~~h~~~V~~l~fs-------p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~ 813 (860)
...-. ...++..+.........++|. .+|. ++++.-..+.|...++.......
T Consensus 227 i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~---- 301 (354)
T 3a9g_A 227 ILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVR---- 301 (354)
T ss_dssp ECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEE----
T ss_pred ecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCccc----
Confidence 22110 011233332223467788883 4564 45555566778888876522110
Q ss_pred ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CC----------CeEeeccC
Q psy4578 814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-ED----------NIMQKPFK 859 (860)
Q Consensus 814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~D----------g~IrI~f~ 859 (860)
.....+.+....+.++++.|||. |+++.. .+ .++||.+.
T Consensus 302 ------~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~~~~G~g~~~~~~g~i~ri~~~ 351 (354)
T 3a9g_A 302 ------KISTFFKNVFGRLRDVVIDDDGG-ILISTSNRDGRGSLRAGDDKILKIVSE 351 (354)
T ss_dssp ------EEEEECTTTSCCEEEEEECTTSC-EEEEECTTSSSSCCCTTCSCEEEEEET
T ss_pred ------ceeeeccCCCCCeeEEEECCCCc-EEEEEeCCCCCcCCCCCCCEEEEEecC
Confidence 00111222245789999999997 555543 23 57888653
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.40 E-value=5.1 Score=43.17 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=38.3
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---cCCCCCeeEEEEccC---CCeEEEEEe
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPY---SEYILATGS 687 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---~~h~~~V~~l~~sp~---g~~llasgs 687 (860)
....+++|.| ++++++ +..+|.|++++. ++. ..+..+ .........|+++|+ +..++++-+
T Consensus 29 ~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLG-GGRYLV-TERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEE-TTEEEE-EETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCeEEEEcC-CCeEEE-EeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 4567899998 566544 566799999973 332 222221 122356889999998 566666554
No 305
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.17 E-value=1.1 Score=52.93 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=72.7
Q ss_pred EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEEEEEcCCCCcEEEEee-C
Q psy4578 672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGS-A 749 (860)
Q Consensus 672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp~g~~llasgs-~ 749 (860)
++++.+.+..+++.|+.+..- ..........+.+||..+... ..+..+ ..+.....++++.+++. +++.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~----~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDA----FGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTT----TCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSC-EEEECSSS
T ss_pred eEEEEecCCEEEEEecccccc----cccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCC-EEEeCCCC
Confidence 556666333477777765420 000000112488999988754 333333 22333445677888887 677877 4
Q ss_pred CCcEEEEeCCCCceeeEEeccC-CCceEEEEEcCCCCCEEEEEE-CC-----CcEEEEECCCCC
Q psy4578 750 DKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSG-TD-----RRLHVWDLSKIG 806 (860)
Q Consensus 750 Dg~I~IWDl~~~~~~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs-~D-----g~I~iWdl~~~~ 806 (860)
++.+.+||..+... ...-..+ ...-.+++..++|+ +++.|| .+ ..+.+||..+..
T Consensus 264 ~~~v~~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 264 AKKTSLYDSSSDSW-IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TTCEEEEEGGGTEE-EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CCceEEecCcCCce-eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc
Confidence 56899999987654 2111111 11123455567787 577777 44 579999987643
No 306
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.81 E-value=4.4 Score=47.16 Aligned_cols=60 Identities=5% Similarity=-0.090 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 811 (860)
Q Consensus 749 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~ 811 (860)
.+|.+..||+.+++. +-.... ..+..+-.....+. +++.++.||.++.||.++++...+.
T Consensus 451 ~~G~l~A~D~~tG~~-~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 451 GLGQIKAYNAITGDY-KWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcCeEEEEECCCCCE-EeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence 347899999988875 333321 11111111122344 4667899999999999997765443
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=91.69 E-value=6.3 Score=42.39 Aligned_cols=178 Identities=9% Similarity=0.139 Sum_probs=99.4
Q ss_pred EEeeccchhhhhhhhhcccceeeeEeecc---CCc---E-EEEEeC--CCcEEEEEcCCCCcccCeeeccC------CC-
Q psy4578 604 MYLENKTRAQICQLLDKLRLLIDVAWHLL---HES---L-FGSVAD--DQKLMIWDTRSHNVSKPSHTVDA------HT- 667 (860)
Q Consensus 604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~---~~~---~-lasgs~--DG~I~IWd~~~~~~~~~~~~~~~------h~- 667 (860)
+++.+. .+++.+.+.. +.++.+..-|. ++. + +++... +++|++|++.... ..+..+.. ..
T Consensus 52 L~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l~~i~~~~~pv~t~~ 127 (355)
T 3amr_A 52 LVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTLQSMTDPDHPIATAI 127 (355)
T ss_dssp EEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCEEECSCTTSCEECCC
T ss_pred EEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--CceeeccccccCcCCCC
Confidence 444455 3444444332 56666666651 111 3 333333 5789999774211 12333211 11
Q ss_pred CCeeEEEE--ccC-CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCCC
Q psy4578 668 AEVNCLSF--NPY-SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYS 740 (860)
Q Consensus 668 ~~V~~l~~--sp~-g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~g 740 (860)
..+..+++ +|. +...+.+...+|. +..|++.... ..+.+.++.- .+.+-.+...+..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~---------------~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~ 191 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGE---------------FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY 191 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSE---------------EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCe---------------EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence 45566666 664 4433556666677 6676663211 1133444443 4578888888877
Q ss_pred CcEEEEeeCCCcEEEEeCCC-----CceeeEEec-c-CCCceEEEEE--cCCCC-CEEEEEECCCcEEEEECC
Q psy4578 741 EYILATGSADKTVALWDLRN-----LKLKLHSFE-S-HKDEIFQVQW--SPHNE-TILASSGTDRRLHVWDLS 803 (860)
Q Consensus 741 ~~llasgs~Dg~I~IWDl~~-----~~~~~~~~~-~-h~~~V~~l~f--sp~g~-~lL~tgs~Dg~I~iWdl~ 803 (860)
.. |..+-.+..|..+|.+. ... +.... + ....+..++. .++++ ++++++-.+++..+||..
T Consensus 192 g~-Lyv~eEd~GIw~~da~p~~~~~~~~-v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GR-LYIAEEDEAIWKFSAEPDGGSNGTV-IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TE-EEEEETTTEEEEEECSTTSCSCCEE-EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred Ce-EEEecccceEEEEeCCcCCCCCceE-EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 75 77888886677777542 222 33332 2 2246788887 45555 667666678899999986
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.60 E-value=5.5 Score=39.93 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=75.6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCc--c-cCeeeccCC--CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEE
Q psy4578 634 ESLFGSVADDQKLMIWDTRSHNV--S-KPSHTVDAH--TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM 708 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~~~~--~-~~~~~~~~h--~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~ 708 (860)
..+|.+...| +++.=...++.. . .....+ +. =..+++++|+|+|. |.++ .+|. +.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~---------------Ly 63 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDK---------------IY 63 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTE---------------EE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCcc-EEEE--eCCe---------------EE
Confidence 4566677777 655554444321 1 011111 22 24788999999887 5666 5665 44
Q ss_pred EEeCCCCCCCCCe--eeecCC--CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeE---Ee-ccCCCceEEE
Q psy4578 709 IWDTRSHNVSKPS--HTVDAH--TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLH---SF-ESHKDEIFQV 778 (860)
Q Consensus 709 iwDl~~~~~~~~~--~~~~~h--~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~---~~-~~h~~~V~~l 778 (860)
-.+..+.....-. .+.-+. -....++.|.|+|. +.++ .||.|+-++--+.. ..+. .+ ..-=..+..+
T Consensus 64 ~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~l 140 (236)
T 1tl2_A 64 KGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFL 140 (236)
T ss_dssp EESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEE
T ss_pred EECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEE
Confidence 4444332110000 000000 01147899999998 4555 56999888753321 1111 11 1111467899
Q ss_pred EEcCCCCCEEEEEECCCcEEEEE
Q psy4578 779 QWSPHNETILASSGTDRRLHVWD 801 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~Dg~I~iWd 801 (860)
.|.|+|. |.+.. |+.++-+.
T Consensus 141 ff~p~G~--Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 141 FFHPNGY--LYAVH-GQQFYKAL 160 (236)
T ss_dssp EECTTSC--EEEEE-TTEEEEEC
T ss_pred EECCCce--EEEEe-CCcEEecC
Confidence 9999996 55666 88865443
No 309
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.47 E-value=17 Score=38.96 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=40.1
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccC---CCeEEEEE
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPY---SEYILATG 686 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---g~~llasg 686 (860)
.....++|.| ++.++++-...|.|++++..++.. ..+..+ ....+....|+++|+ +.+++++-
T Consensus 32 ~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 32 NSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 4557999998 677776655489999998654432 112211 223567899999996 45555543
No 310
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.95 E-value=1.3 Score=51.29 Aligned_cols=84 Identities=12% Similarity=-0.006 Sum_probs=48.3
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEc
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWS 781 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fs 781 (860)
.+|.+..||..++ +.+..+... ..+.+......+. +++.++.||.++.||.++++. +..+.... ....-+.+.
T Consensus 442 ~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 442 EMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp CCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred CCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCE-EEEEeCCCCcEeeeEEEE
Confidence 3578999999887 333333321 2222222233345 466789999999999999987 55554222 112223455
Q ss_pred CCCCCEEEEEE
Q psy4578 782 PHNETILASSG 792 (860)
Q Consensus 782 p~g~~lL~tgs 792 (860)
.+|+.++++.+
T Consensus 516 ~~G~~yv~~~~ 526 (571)
T 2ad6_A 516 FKGKQYIGSMY 526 (571)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEC
Confidence 77764444443
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.47 E-value=9.8 Score=40.82 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=39.3
Q ss_pred ccceeeeEeeccCCc-EEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccC---CCeEEEEEeC
Q psy4578 621 LRLLIDVAWHLLHES-LFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPY---SEYILATGSA 688 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~-~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---g~~llasgs~ 688 (860)
......|+|.| +++ +++ +...|.|++++... .....+..+ ....+....++|+|+ +.+++++-+.
T Consensus 17 l~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~ 89 (353)
T 2g8s_A 17 LDHPWALAFLP-DNHGMLI-TLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE 89 (353)
T ss_dssp ESSEEEEEECS-TTCCEEE-EETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCcEEEEEcC-CCCEEEE-EeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence 34567999998 566 554 56679999998532 111111111 122346789999996 5666666443
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.42 E-value=11 Score=47.88 Aligned_cols=226 Identities=15% Similarity=0.198 Sum_probs=127.9
Q ss_pred EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC----CCCeeEEEEccC
Q psy4578 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPY 678 (860)
Q Consensus 603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h----~~~V~~l~~sp~ 678 (860)
.+.+.|.........+.-..+|.-=.|-. .+.++-.+ +..|.-|++... ..+...+..| ...|..-..+++
T Consensus 87 ~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~ 161 (1630)
T 1xi4_A 87 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK 161 (1630)
T ss_pred eEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCC
Confidence 45556666666666666667787777874 44444443 358999999753 3444444444 456777888899
Q ss_pred CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc--CCCCcEEEEeeC---CCcE
Q psy4578 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSA---DKTV 753 (860)
Q Consensus 679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s--p~g~~llasgs~---Dg~I 753 (860)
.++++++|-..+. +.-.|.+.+|+.+.+ ....+.||.+....+... +....+++.+.. .|.+
T Consensus 162 ~kW~~l~gi~~~~---------~~v~G~mQLyS~er~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 162 QKWLLLTGISAQQ---------NRVVGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred CCeEEEEeeccCC---------Ccccceeeeeecccc----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 9998888753322 234577999998764 333456666554444332 222224443332 2688
Q ss_pred EEEeCCCC---ceee-----EE-ec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578 754 ALWDLRNL---KLKL-----HS-FE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822 (860)
Q Consensus 754 ~IWDl~~~---~~~~-----~~-~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i 822 (860)
+|-++... ..+. .. +. ....-..++..++.-. ++..-+.-|.|+++|+.++.+.....- . ...+
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ri--s--~~~i 303 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI--S--GETI 303 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccc--c--CCce
Confidence 88888543 1100 00 11 0122234566666555 577788899999999999876543321 1 1223
Q ss_pred EEecCc--cCceEEEEEccCCCeEEEEEeCCCe
Q psy4578 823 FIHGGH--TAKISDFSWNPNEPWVICSVSEDNI 853 (860)
Q Consensus 823 ~~~~~h--~~~I~~i~~spdg~~Llasgs~Dg~ 853 (860)
+....+ ++.| ++.+..|..+-++..++++
T Consensus 304 F~~~~~~~~~g~--~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 304 FVTAPHEATAGI--IGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEeccCCCCCce--EEEcCCceEEEEEEccchh
Confidence 322222 3334 4455677744444444433
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=90.34 E-value=3 Score=44.91 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=59.0
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee---ecCCCCCeEEEEEcCC---CC
Q psy4578 668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT---VDAHTAEVNCLSFNPY---SE 741 (860)
Q Consensus 668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~---~~~h~~~I~sl~~sp~---g~ 741 (860)
.....++|.|+|+ ++++ ..+|. |.+++ .+. ...+.. ..........++++|+ +.
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~---------------I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGR---------------IRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTE---------------EEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcCCCe-EEEE-eCCCe---------------EEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCC
Confidence 3567999999998 4444 45576 66665 221 011111 1122356789999998 55
Q ss_pred cEEEEeeCC-----CcEEEEeCCCCce-----eeEEec---cCCCceEEEEEcCCCCCEEEEEE
Q psy4578 742 YILATGSAD-----KTVALWDLRNLKL-----KLHSFE---SHKDEIFQVQWSPHNETILASSG 792 (860)
Q Consensus 742 ~llasgs~D-----g~I~IWDl~~~~~-----~~~~~~---~h~~~V~~l~fsp~g~~lL~tgs 792 (860)
.++++-+.+ +.|..|+...... .+..+. +.......++|.|+|. ++++.+
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence 556555433 6788888764321 112232 1112346899999995 455544
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.33 E-value=31 Score=40.91 Aligned_cols=186 Identities=8% Similarity=0.049 Sum_probs=101.3
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
..|.++.-.. ...|..|+.+| +..||..+..... ........|.++.. .+|. +..|+.+|
T Consensus 63 ~~i~~i~~d~--~g~lWigT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~--lWigt~~G----------- 122 (758)
T 3ott_A 63 TRIYCGVIID--NTYLYMGTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT--LWLGALNG----------- 122 (758)
T ss_dssp SCEEEEEEET--TTEEEEEETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE--EEEEETTE-----------
T ss_pred ceEEEEEEcC--CCcEEEEeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc--EEEEcCCc-----------
Confidence 4578877664 34555566665 7889987642211 11112235666654 3443 44455555
Q ss_pred cCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----CC
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES----HK 772 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----h~ 772 (860)
+..+|..+.. +..+ ......|.++....+|. +..|+.+ .+..+|..+.......... ..
T Consensus 123 -----l~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~ 190 (758)
T 3ott_A 123 -----LYTYQLQSRK----LTSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSN 190 (758)
T ss_dssp -----EEEEETTTCC----EEEECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EEEEEETTTTEEEEECCCCCTTCSS
T ss_pred -----ceeEeCCCCe----EEEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CHhhCccCCCceEEecCCCcccccc
Confidence 7778776532 1122 01234688888888787 3345544 5778887765531111111 12
Q ss_pred CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
..|.++....++.. |..|+. +-+..+|..+.... ..... ....|.++....+|.. .+ |+.+|
T Consensus 191 ~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~~~------------~~~~l--~~~~i~~i~~d~~g~l-Wi-gT~~G 252 (758)
T 3ott_A 191 LFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQIK------------QTEAF--HNNSIKSLALDGNGDL-LA-GTDNG 252 (758)
T ss_dssp CCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTEEE------------EEEEE--EEEEEEEEEECTTCCE-EE-EETTE
T ss_pred ceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCeEE------------eccCC--CCCeEEEEEEcCCCCE-EE-EeCCc
Confidence 34888888777654 444553 45778887652210 00111 1345888888888883 33 34667
Q ss_pred eEeec
Q psy4578 853 IMQKP 857 (860)
Q Consensus 853 ~IrI~ 857 (860)
..+++
T Consensus 253 l~~~~ 257 (758)
T 3ott_A 253 LYVYH 257 (758)
T ss_dssp EEEEC
T ss_pred eeEEe
Confidence 76654
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.31 E-value=5.6 Score=41.46 Aligned_cols=152 Identities=12% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCcEEEEEeC----C-----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578 633 HESLFGSVAD----D-----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY 703 (860)
Q Consensus 633 ~~~~lasgs~----D-----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~ 703 (860)
++.+++.|+. + ..+.+||..+.. ...+..+.........+.+ ++ .+++.|+.++. ..
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~----------~~ 135 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-WSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGC----------IH 135 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTE-EEECCCCSSCCBTCEEEEE--TT-EEEEECCEETT----------EE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCe-EeECCCCCcCccccEEEEE--CC-EEEEEcCCCCC----------cc
Confidence 5667777765 2 357888887642 1112111111112222222 23 46666664432 12
Q ss_pred CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEE
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQ 777 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~ 777 (860)
...+.+||..+... ..+..+........++.+ ++. +++.|+.+ ..+.+||..+...... .+........+
T Consensus 136 ~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 211 (308)
T 1zgk_A 136 HNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV 211 (308)
T ss_dssp CCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred cccEEEECCCCCeE-eECCCCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceE
Confidence 23488888876521 111111111222223333 344 67777764 4589999987764111 11111111222
Q ss_pred EEEcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578 778 VQWSPHNETILASSGTD-----RRLHVWDLSKI 805 (860)
Q Consensus 778 l~fsp~g~~lL~tgs~D-----g~I~iWdl~~~ 805 (860)
+.+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 212 ~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 212 CVL--HN-CIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEE--CC-EEEEEeCCCCCCccceEEEEeCCCC
Confidence 323 34 467777754 56889998774
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.24 E-value=10 Score=42.32 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=39.2
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC------CCCCeeEEEEccC---CCeEEEEEe
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPY---SEYILATGS 687 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~------h~~~V~~l~~sp~---g~~llasgs 687 (860)
....+++|.| +++++++-...+.|.+++..++.. ..+..+.. ..+....|+|+|+ +..++++-+
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 3556899998 677666544334788887654322 22222211 2456789999996 666666654
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.81 E-value=5.5 Score=41.28 Aligned_cols=152 Identities=12% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
++.+++.|+.++ .+.+||..+.. ...+..+.........+.+ +..+++.|+.++. .....+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~----------~~~~~~ 126 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGS----------TGLSSV 126 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEEEEECSS----------CEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEEE---CCEEEEEcCCCCC----------ccCceE
Confidence 567777777543 57888887642 1222222111122222222 3357777776543 111347
Q ss_pred EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-------CcEEEEeCCCCceeeE-EeccCCCceEEEE
Q psy4578 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-------KTVALWDLRNLKLKLH-SFESHKDEIFQVQ 779 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-------g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~ 779 (860)
.+||+.+... ..+..+........++.+ ++. +++.|+.+ ..+.+||..+...... .+.........+.
T Consensus 127 ~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 202 (302)
T 2xn4_A 127 EAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV 202 (302)
T ss_dssp EEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeE-eecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE
Confidence 7888876521 112112111122222333 344 67777643 4588999987764211 1111111122222
Q ss_pred EcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578 780 WSPHNETILASSGTD-----RRLHVWDLSKI 805 (860)
Q Consensus 780 fsp~g~~lL~tgs~D-----g~I~iWdl~~~ 805 (860)
+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 203 ~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 203 L--NN-LLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp E--TT-EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred E--CC-EEEEECCCCCCcccceEEEEeCCCC
Confidence 2 34 467777754 46888998764
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.49 E-value=6.2 Score=40.81 Aligned_cols=151 Identities=12% Similarity=0.115 Sum_probs=75.0
Q ss_pred CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
++.+++.|+.++ .+.+||..+.. ...+...........++.+ ++ .+++.|+.++. .....+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~----------~~~~~~ 177 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGL----------NILNSV 177 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSS----------CBCCCE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCe-EEECCCCCCCcccceEEEE--CC-EEEEECCCCCC----------cccceE
Confidence 567777776543 57888887642 2222222211112222222 33 46777766543 123458
Q ss_pred EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS 781 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs 781 (860)
.+||+.+... ..+..+........++.+ ++ .+++.|+.+ ..+.+||..+...... .+........++.+
T Consensus 178 ~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 252 (301)
T 2vpj_A 178 EKYDPHTGHW-TNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL- 252 (301)
T ss_dssp EEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred EEEeCCCCcE-EeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-
Confidence 8899876532 222112111122223333 34 467788764 4689999988765211 11111111222222
Q ss_pred CCCCCEEEEEECC-----CcEEEEECCC
Q psy4578 782 PHNETILASSGTD-----RRLHVWDLSK 804 (860)
Q Consensus 782 p~g~~lL~tgs~D-----g~I~iWdl~~ 804 (860)
++. +++.||.+ ..+.+||..+
T Consensus 253 -~~~-i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 253 -RGR-LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp -TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred -CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence 444 67777755 3577788776
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.14 E-value=7.5 Score=40.30 Aligned_cols=153 Identities=8% Similarity=0.088 Sum_probs=74.1
Q ss_pred CCcEEEEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEE
Q psy4578 633 HESLFGSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM 708 (860)
Q Consensus 633 ~~~~lasgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~ 708 (860)
++.+++.|+.+ ..+.+||..+.. ...+..+.........+.+ +..+++.|+.+.. ......+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~---------~~~~~~~~ 121 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDS-WYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVG---------NSALYLFE 121 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTE-EEEEECCSSCCBSCEEEEE---TTEEEEECCBBTT---------BSCCCCEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCe-EEECCCCCccccceeEEEE---CCEEEEECCCCCC---------CcEeeeEE
Confidence 56777777754 568888887642 1222222111112222222 3346777765411 12234588
Q ss_pred EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC---------CCcEEEEeCCCCceeeE-EeccCCCceEEE
Q psy4578 709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA---------DKTVALWDLRNLKLKLH-SFESHKDEIFQV 778 (860)
Q Consensus 709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~---------Dg~I~IWDl~~~~~~~~-~~~~h~~~V~~l 778 (860)
+||..+... ..+..+........++.+ ++. +++.|+. -..+.+||..+...... .+.........+
T Consensus 122 ~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 197 (306)
T 3ii7_A 122 CYDTRTESW-HTKPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV 197 (306)
T ss_dssp EEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred EEeCCCCce-EeCCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE
Confidence 888876531 111111111112222332 344 6677654 34588999988764211 111111111222
Q ss_pred EEcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578 779 QWSPHNETILASSGTD-----RRLHVWDLSKI 805 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~D-----g~I~iWdl~~~ 805 (860)
.+ ++. +++.||.+ ..+.+||+.+.
T Consensus 198 ~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 198 FV--KDK-IFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EE--TTE-EEEECCEETTEEBCCEEEEETTTT
T ss_pred EE--CCE-EEEEeCCCCCCCCceEEEeeCCCC
Confidence 22 343 67777643 46888998774
No 320
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.07 E-value=26 Score=37.33 Aligned_cols=141 Identities=16% Similarity=0.269 Sum_probs=90.1
Q ss_pred CcEEEEEe---CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEE
Q psy4578 634 ESLFGSVA---DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIW 710 (860)
Q Consensus 634 ~~~lasgs---~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iw 710 (860)
+++++.-. .+..|.|-|+.++.. ..+.... .-+.-.+|..+ ++|.-. ..+ +.++
T Consensus 36 DkyicVrE~~~~~~~VvIiDl~n~~~--~~Rrpi~----AdsAIMnP~~~-ViALra-g~~---------------LQiF 92 (365)
T 2xzh_A 36 DKFICIREKVGEQAQVVIIDMNDPSN--PIRRPIS----ADSAIMNPASK-VIALKA-GKT---------------LQIF 92 (365)
T ss_dssp TTEEEEEEEETTEEEEEEEETTSTTS--CEEEECC----CSEEEECSSSS-EEEEEE-TTE---------------EEEE
T ss_pred CceEEEEecCCCCCEEEEEECCCCCC--ccccccc----cceeeeCCCcc-EEEEec-CCe---------------EEEe
Confidence 45555433 233799999987543 2222111 22334578766 566554 344 9999
Q ss_pred eCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC----CceEEEEEcCCCCC
Q psy4578 711 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK----DEIFQVQWSPHNET 786 (860)
Q Consensus 711 Dl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~----~~V~~l~fsp~g~~ 786 (860)
|+++. ..+..+. ....|.--.|-....--++| +..|+-|++.+...+...+..|. ..|..-..+++.++
T Consensus 93 nletK---~klks~~-~~e~VvfWkWis~~~L~lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 93 NIEMK---SKMKAHT-MTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp ETTTT---EEEEEEE-CSSCEEEEEECSSSEEEEEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred chHHh---hhhccee-cCCccEEEEecCCCeEEEEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCE
Confidence 99986 4444443 34678888887665522333 45899999987666677776553 57777888999998
Q ss_pred EEEEEE------CCCcEEEEECCC
Q psy4578 787 ILASSG------TDRRLHVWDLSK 804 (860)
Q Consensus 787 lL~tgs------~Dg~I~iWdl~~ 804 (860)
++++|- -.|.+.+|....
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEEEeEeccCCccceeEEEEeecc
Confidence 777764 237788888776
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.25 E-value=17 Score=45.76 Aligned_cols=155 Identities=8% Similarity=0.085 Sum_probs=88.8
Q ss_pred cceeeeE---eeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578 622 RLLIDVA---WHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688 (860)
Q Consensus 622 ~~V~~v~---~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~ 688 (860)
..+.+++ |......++++|+ ..|.|.+|++..++ .+.+.. ....++|++++--. | +++++-+
T Consensus 829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~-~~v~g~v~al~~~~-g-~Lla~ig- 903 (1158)
T 3ei3_A 829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAE-KEVKGAVYSMVEFN-G-KLLASIN- 903 (1158)
T ss_dssp EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEE-EEESSCEEEEEEET-T-EEEEEET-
T ss_pred cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEE-EEcCCcCEEEeeeC-C-EEEEEcC-
Confidence 3344444 3322357888876 35889999997431 222222 23367888877543 4 4444332
Q ss_pred CCceeeecccccccCCCcEEEEeCCCCCCCCCee-eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe--CCCCceee
Q psy4578 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD--LRNLKLKL 765 (860)
Q Consensus 689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD--l~~~~~~~ 765 (860)
.. +++|++...+ .+. ....+ ..|..+.....+++ ++.|..-.+|.++. ....+...
T Consensus 904 -~~---------------l~vy~l~~~~---~L~~~~~~~-~~i~~~~l~~~~~~-I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 904 -ST---------------VRLYEWTTEK---ELRTECNHY-NNIMALYLKTKGDF-ILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp -TE---------------EEEEEECTTS---CEEEEEEEC-CCSCEEEEEEETTE-EEEEESSBCEEEEEEETTTTEEEE
T ss_pred -CE---------------EEEEECCCCc---eEEEEeecc-ccEEEEEEeccCCE-EEEEEhhheEEEEEEEcCCCeEEE
Confidence 33 8999987642 222 11111 11332222234664 77887777776654 44443322
Q ss_pred EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804 (860)
Q Consensus 766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~ 804 (860)
..-..+..+++++.+-.++. ++.+..+|.+.+.....
T Consensus 963 ~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence 22334567889999876653 67789999999998765
No 322
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=87.24 E-value=6.6 Score=45.47 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc-eEEEEEc
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE-IFQVQWS 781 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~-V~~l~fs 781 (860)
..|.+..||+.++ +.+...... ..+..-.....+. +++.|+.||.++.||.++++. +..+....+. ..-+.|.
T Consensus 464 ~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 464 HVGSLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp CSEEEEEECTTTC---CEEEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred CcceEEEEECCCC---CEEEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCE-EEEecCCCCcccCceEEE
Confidence 3578999999987 333333222 1121111112344 577799999999999999987 5555532221 1225666
Q ss_pred CCCCCEEEEEE
Q psy4578 782 PHNETILASSG 792 (860)
Q Consensus 782 p~g~~lL~tgs 792 (860)
.+|+.++++.+
T Consensus 538 ~~G~qYv~~~~ 548 (582)
T 1flg_A 538 QDGEQYLGVTV 548 (582)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEc
Confidence 78875454443
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.72 E-value=35 Score=36.39 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=40.8
Q ss_pred CceEEEEEcC-------CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578 773 DEIFQVQWSP-------HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 845 (860)
Q Consensus 773 ~~V~~l~fsp-------~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll 845 (860)
.....++|.. +|. ++++.-..+.|...++....... ....+.+....+.++++.|||...+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~rp~~v~~~pdG~lyv 338 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDKVTE-----------DGRILTDRGQRIRDVRTGPDGYLYV 338 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEE-----------EEEESGGGCCCEEEEEECTTSCEEE
T ss_pred cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCeEee-----------eEEcccCCCCceeEEEECCCCcEEE
Confidence 4567777764 344 45555566777777765421100 0011123345799999999999433
Q ss_pred EEEe-CCCeEeecc
Q psy4578 846 CSVS-EDNIMQKPF 858 (860)
Q Consensus 846 asgs-~Dg~IrI~f 858 (860)
++-. .+.+.||..
T Consensus 339 ~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 339 LTDESSGELLKVSP 352 (353)
T ss_dssp EECSTTEEEEEEEC
T ss_pred EEeCCCCEEEEEeC
Confidence 3332 344566643
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.59 E-value=28 Score=38.76 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=57.1
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCC--
Q psy4578 668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPY-- 739 (860)
Q Consensus 668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~-- 739 (860)
...+.++|.|+|+ ++++-...+. |.+++..++.. ..+..+. ........|+|+|+
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~---------------I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGK---------------ILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCE---------------EEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred CCceEEEEcCCCc-EEEEEcCCCE---------------EEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcC
Confidence 4567999999998 4555433334 44444322211 1111111 12456789999995
Q ss_pred -CCcEEEEeeC------------CCcEEEEeCCCCc-------eeeEEecc-CCCceEEEEEcCCCCCEEEEEEC
Q psy4578 740 -SEYILATGSA------------DKTVALWDLRNLK-------LKLHSFES-HKDEIFQVQWSPHNETILASSGT 793 (860)
Q Consensus 740 -g~~llasgs~------------Dg~I~IWDl~~~~-------~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~ 793 (860)
+..+.++-+. ...|.-|+..... ..+..+.. .......++|.|+|. |+++.+.
T Consensus 90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd 163 (454)
T 1cru_A 90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD 163 (454)
T ss_dssp TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence 5545555442 2346666553321 11111221 123478899999997 4555553
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.66 E-value=7.8 Score=40.05 Aligned_cols=154 Identities=10% Similarity=0.118 Sum_probs=73.9
Q ss_pred CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
++.+++.|+.++ .+.+||..+.. ...+..+........++.+ +..+++.|+.++. .......+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~--------~~~~~~~~ 175 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVA--------SRQCLSTV 175 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEECCEETT--------TTEECCCE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEEE---CCEEEEEeCCCCC--------CCccccEE
Confidence 567777777654 46778876532 1222222111111222222 2346677665432 00112348
Q ss_pred EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS 781 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs 781 (860)
.+||+.+... ..+..+........++.+ ++. +++.|+.+ ..+.+||..+...... ...........+.+
T Consensus 176 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 250 (302)
T 2xn4_A 176 ECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV- 250 (302)
T ss_dssp EEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred EEEeCCCCcE-EECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-
Confidence 8888876521 111112111122223333 344 67788764 4689999988764211 11111111122222
Q ss_pred CCCCCEEEEEECCC-----cEEEEECCCC
Q psy4578 782 PHNETILASSGTDR-----RLHVWDLSKI 805 (860)
Q Consensus 782 p~g~~lL~tgs~Dg-----~I~iWdl~~~ 805 (860)
++. +++.||.++ .+.+||..+.
T Consensus 251 -~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 -NGL-LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred -CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence 444 677777553 4888888764
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.15 E-value=8.2 Score=40.15 Aligned_cols=151 Identities=11% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVADD-----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~D-----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
++.+++.|+.+ ..+.+||..+.. ...+..+........++.+ +..+++.|+.++. .....+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~----------~~~~~~ 186 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGT----------NRLNSA 186 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSS----------CBCCCE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCccccceEEEEE---CCEEEEEeCCCCC----------CcCceE
Confidence 56777777643 357888887642 1111111111122222333 3357777776543 113458
Q ss_pred EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS 781 (860)
Q Consensus 708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs 781 (860)
.+||+.+... ..+..+........++.+ ++. +++.|+.+ ..+.+||+.+...... .+.........+.+
T Consensus 187 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 261 (308)
T 1zgk_A 187 ECYYPERNEW-RMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH- 261 (308)
T ss_dssp EEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred EEEeCCCCeE-eeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-
Confidence 8888876531 111111111222223333 344 67788765 5699999988764211 11111111122222
Q ss_pred CCCCCEEEEEECC-----CcEEEEECCC
Q psy4578 782 PHNETILASSGTD-----RRLHVWDLSK 804 (860)
Q Consensus 782 p~g~~lL~tgs~D-----g~I~iWdl~~ 804 (860)
++ .+++.||.+ ..+.+||+.+
T Consensus 262 -~~-~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 262 -QG-RIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp -TT-EEEEECCBCSSCBCCEEEEEETTT
T ss_pred -CC-EEEEEcCcCCCcccceEEEEcCCC
Confidence 34 467777644 3567777765
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=84.49 E-value=18 Score=37.92 Aligned_cols=127 Identities=9% Similarity=0.132 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE-eCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578 644 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG-SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH 722 (860)
Q Consensus 644 G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg-s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~ 722 (860)
+.|+..++...+. ..+.. . .+..|++++++++.+. +.++. ..|...++... ...
T Consensus 88 ~~Iy~i~~dg~~~----~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~-------------~~Iy~~~~dGs----~~~ 142 (302)
T 3s25_A 88 NSLCRIKRNGHGS----TVLDP--D--PCIYASLIGNYIYYLHYDTQTA-------------TSLYRIRIDGE----EKK 142 (302)
T ss_dssp EEEEEEETTSCCC----EEEEC--S--CEEEEEEETTEEEEEEESSSSC-------------EEEEEEETTSC----CCE
T ss_pred CeEEEEeCCCCcc----eEeec--C--CccEEEEeCCEEEEEeecCCCC-------------ceEEEEECCCC----CeE
Confidence 3566667665421 12211 1 1236778888866655 22332 22555566543 122
Q ss_pred eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD 801 (860)
Q Consensus 723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd 801 (860)
.+..+.. ..++|+++.++.+......|..-++.+... ...+. +... ..++|++.++..+-..+ ..|..-+
T Consensus 143 ~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ 213 (302)
T 3s25_A 143 KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-ALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVN 213 (302)
T ss_dssp EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE-EEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE-EEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEE
Confidence 3333322 456778888776766567888888887664 22232 2222 34569998866555433 3555555
Q ss_pred CCC
Q psy4578 802 LSK 804 (860)
Q Consensus 802 l~~ 804 (860)
+..
T Consensus 214 ldG 216 (302)
T 3s25_A 214 INN 216 (302)
T ss_dssp SSS
T ss_pred CCC
Confidence 554
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.90 E-value=14 Score=36.99 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=76.6
Q ss_pred cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc---Ceeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578 622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK---PSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE 697 (860)
Q Consensus 622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~---~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~ 697 (860)
..+.+++|+| ++.+.++ .+|.+.-.+..+..... .-..+. .--....++.|.|+|. +.++ .||.
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~------ 108 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDK------ 108 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTE------
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCE------
Confidence 3677999999 7777666 66775555543321100 001110 0011247899999997 4555 4577
Q ss_pred cccccCCCcEEEEeCCCCCCCCCee---ee-cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----eeEEe
Q psy4578 698 EEEENYDQKLMIWDTRSHNVSKPSH---TV-DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----KLHSF 768 (860)
Q Consensus 698 ~~~~~~dg~I~iwDl~~~~~~~~~~---~~-~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----~~~~~ 768 (860)
|.-++-.+.....-+. .+ .+-=..+..|.+.|+|. |.+.. ||.+.-+..-.... ....+
T Consensus 109 ---------iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~ 176 (236)
T 1tl2_A 109 ---------LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKI 176 (236)
T ss_dssp ---------EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEE
T ss_pred ---------EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCccccccccee
Confidence 6555543221111110 11 11124679999999998 45444 77754332221110 01111
Q ss_pred c-cCCCceEEEEEcCCCCCEEEEEECCCcEE
Q psy4578 769 E-SHKDEIFQVQWSPHNETILASSGTDRRLH 798 (860)
Q Consensus 769 ~-~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~ 798 (860)
. ..-..-+.+.|+++|. |.... +|.+.
T Consensus 177 g~~g~~~yr~l~f~~~G~--l~~v~-~g~~Y 204 (236)
T 1tl2_A 177 GQGGWDTFKFLFFSSVGT--LFGVQ-GGKFY 204 (236)
T ss_dssp ESSSGGGEEEEEECTTSC--EEEEE-TTEEE
T ss_pred ccCCcceEEEEEECCCCc--EEEEe-CCeEE
Confidence 1 2223445577999986 33444 77443
No 329
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.75 E-value=9.8 Score=39.38 Aligned_cols=156 Identities=9% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCcEEEEEeCC------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578 633 HESLFGSVADD------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK 706 (860)
Q Consensus 633 ~~~~lasgs~D------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~ 706 (860)
++.+++.|+.+ ..+.+||..+.. ...+..+........++.+ ++ .+++.|+.++. ...+.....
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~------~~~~~~~~~ 170 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGN------NVSGRVLNS 170 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEECCEESC------TTTCEECCC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCC------CCcccccce
Confidence 56777777765 458888887642 1112111111111122222 23 46666654332 000001345
Q ss_pred EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEE
Q psy4578 707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQW 780 (860)
Q Consensus 707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~f 780 (860)
+.+||+.+... ..+..+.........+.+ ++. +++.|+.+ ..+.+||..+...... .+........++.+
T Consensus 171 ~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 171 CEVYDPATETW-TELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp EEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred EEEeCCCCCeE-EECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 88899877531 222222111122222333 344 67777654 4688999988764111 11111112223333
Q ss_pred cCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578 781 SPHNETILASSGTD-----RRLHVWDLSKI 805 (860)
Q Consensus 781 sp~g~~lL~tgs~D-----g~I~iWdl~~~ 805 (860)
++ .+++.||.+ ..+.+||..+.
T Consensus 247 --~~-~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 --GS-IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp --TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred --CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 34 467788744 56888888763
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.56 E-value=16 Score=38.31 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred EEEccCCCeEEEEEeCCCc---eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe--
Q psy4578 673 LSFNPYSEYILATGSADKT---QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG-- 747 (860)
Q Consensus 673 l~~sp~g~~llasgs~Dg~---i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg-- 747 (860)
--++++|.++..+...++. ..+| ......|+..++...+ . ..+.. . .+..|++++.++..+-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~-----~~n~~~Iy~i~~dg~~---~-~~l~~--~--~~~~~s~~g~~Iy~~~~~ 124 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFF-----SYDRNSLCRIKRNGHG---S-TVLDP--D--PCIYASLIGNYIYYLHYD 124 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCS-----SCCSEEEEEEETTSCC---C-EEEEC--S--CEEEEEEETTEEEEEEES
T ss_pred eeEEEcCCEEEEEECCCCccccccee-----ccCCCeEEEEeCCCCc---c-eEeec--C--CccEEEEeCCEEEEEeec
Confidence 4567899988877766531 0000 0113347777777652 1 12221 1 1236788898766554
Q ss_pred -eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578 748 -SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805 (860)
Q Consensus 748 -s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~ 805 (860)
..+..|..-++.+.. ...+..+.. ..|+++|+.+..+......|..-++...
T Consensus 125 ~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 125 TQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp SSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred CCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence 234556666666544 333443332 4567888886666554677887777653
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.54 E-value=72 Score=37.67 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=99.1
Q ss_pred ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec--cCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578 623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE 700 (860)
Q Consensus 623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~--~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~ 700 (860)
.|.++... ++. +..|+.+ -+..+|..++.. ...... ......|.++....+|. +..|+.+|
T Consensus 104 ~i~~i~~~--~g~-lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G---------- 166 (758)
T 3ott_A 104 DVRTMALQ--GDT-LWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYNG---------- 166 (758)
T ss_dssp CEEEEEEE--TTE-EEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEEEETTE----------
T ss_pred eEEEEEec--CCc-EEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCCC----------
Confidence 46666432 444 4445555 577888765322 111000 11234678888777776 33344555
Q ss_pred ccCCCcEEEEeCCCCCCCCCeeeec--C----CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578 701 ENYDQKLMIWDTRSHNVSKPSHTVD--A----HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 774 (860)
Q Consensus 701 ~~~dg~I~iwDl~~~~~~~~~~~~~--~----h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 774 (860)
+..+|..+.. ...+. . ....|.++...+++.. |..|+. +.+..+|..+.... .........
T Consensus 167 ------l~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~~~-~~~~l~~~~ 233 (758)
T 3ott_A 167 ------LCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQIK-QTEAFHNNS 233 (758)
T ss_dssp ------EEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTEEE-EEEEEEEEE
T ss_pred ------HhhCccCCCc----eEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCeEE-eccCCCCCe
Confidence 5566655431 11110 0 1234888888877663 444553 46888998766531 111112345
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I 854 (860)
|.++....+|. |..|+.+ -+.+++..+.... .......... .-....|.++..+.+|.. . .|+..|..
T Consensus 234 i~~i~~d~~g~--lWigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~------~l~~~~i~~i~~D~~g~l-W-iGT~~Gl~ 301 (758)
T 3ott_A 234 IKSLALDGNGD--LLAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQ------SLTNNIIWNIFADQEHNI-W-LGTDYGIS 301 (758)
T ss_dssp EEEEEECTTCC--EEEEETT-EEEEECCTTSCCE-EECCCTTCTT------SCSCSCEEEEEECTTCCE-E-EEESSSEE
T ss_pred EEEEEEcCCCC--EEEEeCC-ceeEEecCCCcEE-EEEcCCCCcC------cCCcCeEEEEEEcCCCCE-E-EEeCCccc
Confidence 88888888886 4566644 5778886653211 0000000000 012346888888888873 3 34455643
Q ss_pred e
Q psy4578 855 Q 855 (860)
Q Consensus 855 r 855 (860)
.
T Consensus 302 ~ 302 (758)
T 3ott_A 302 L 302 (758)
T ss_dssp E
T ss_pred c
Confidence 3
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=83.46 E-value=13 Score=38.56 Aligned_cols=153 Identities=12% Similarity=0.181 Sum_probs=72.8
Q ss_pred CCcEEEEEeCC--------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578 633 HESLFGSVADD--------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD 704 (860)
Q Consensus 633 ~~~~lasgs~D--------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d 704 (860)
++.+++.|+.+ ..+.+||..+.. ...+..+........++.+ +..+++.|+.+.. ....
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~---------~~~~ 164 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSD---------RKCL 164 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE---TTEEEEECCBCTT---------SCBC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCcccceeEEEE---CCEEEEEeCCCCC---------Cccc
Confidence 56777777632 358888887642 1222221111111222222 3346777765211 1223
Q ss_pred CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC-----cEEEEeCCCCceeeE-EeccCCCceEEE
Q psy4578 705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK-----TVALWDLRNLKLKLH-SFESHKDEIFQV 778 (860)
Q Consensus 705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg-----~I~IWDl~~~~~~~~-~~~~h~~~V~~l 778 (860)
..+.+||..+... ..+..+........++.+ ++. +++.|+.++ .+.+||..+...... ...........+
T Consensus 165 ~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 165 NKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp CCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 4588888876521 111112111122223333 344 677777654 488999988764211 111111112222
Q ss_pred EEcCCCCCEEEEEECC--------------CcEEEEECCCC
Q psy4578 779 QWSPHNETILASSGTD--------------RRLHVWDLSKI 805 (860)
Q Consensus 779 ~fsp~g~~lL~tgs~D--------------g~I~iWdl~~~ 805 (860)
.+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 241 ~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 241 SL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22 34 467777753 24677887763
No 333
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=83.15 E-value=9 Score=44.52 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEc
Q psy4578 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWS 781 (860)
Q Consensus 703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fs 781 (860)
..|.+..||+.++ +.+..... .....+-.....+. +++.|+.||.++.||.++++. +-.+.... ....-+.|.
T Consensus 451 ~~G~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~-lW~~~l~~g~~~~P~~y~ 524 (599)
T 1w6s_A 451 GLGQIKAYNAITG---DYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDL-LWKFKIPSGAIGYPMTYT 524 (599)
T ss_dssp CCEEEEEECTTTC---CEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred CcCeEEEEECCCC---CEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCE-EEEeeCCCCcEeccEEEE
Confidence 3578999999987 33333321 11111111122345 466789999999999999987 55554222 222235556
Q ss_pred CCCCCEEEEEE
Q psy4578 782 PHNETILASSG 792 (860)
Q Consensus 782 p~g~~lL~tgs 792 (860)
.+|+.++++.+
T Consensus 525 ~~G~qyv~~~~ 535 (599)
T 1w6s_A 525 HKGTQYVAIYY 535 (599)
T ss_dssp ETTEEEEEEEE
T ss_pred eCCEEEEEEEc
Confidence 67765444443
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=79.35 E-value=70 Score=34.10 Aligned_cols=220 Identities=10% Similarity=0.129 Sum_probs=107.8
Q ss_pred ccceeeeEeecc---CCcEEEEEe--CCCcEEEEEcCCC-----CcccC---eeecc-CCCCCeeEEEEccCCCeEEEEE
Q psy4578 621 LRLLIDVAWHLL---HESLFGSVA--DDQKLMIWDTRSH-----NVSKP---SHTVD-AHTAEVNCLSFNPYSEYILATG 686 (860)
Q Consensus 621 ~~~V~~v~~sp~---~~~~lasgs--~DG~I~IWd~~~~-----~~~~~---~~~~~-~h~~~V~~l~~sp~g~~llasg 686 (860)
.+....|+++|+ ++.+.++-+ .++.|.-|....+ ..... +..+. ........|.|.|+|. |+++.
T Consensus 79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~ 157 (347)
T 3das_A 79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGT 157 (347)
T ss_dssp TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEEC
T ss_pred CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEE
Confidence 456889999984 455555422 3455666665542 11111 11111 1123356799999996 56655
Q ss_pred eCCCceeeecccccccCCCcEEEEeCCCCC----C--CCCeeeecCCCCCeEEEEEcCCCCcEEEEe-eCCCcEEEEeCC
Q psy4578 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHN----V--SKPSHTVDAHTAEVNCLSFNPYSEYILATG-SADKTVALWDLR 759 (860)
Q Consensus 687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~----~--~~~~~~~~~h~~~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~ 759 (860)
+..+.. ..........|+|.-.+....- . ...+. ..+|. ....++|+|+|. ++++= +.|+.=.|--+.
T Consensus 158 Gd~~~~--~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 158 GESGDT--GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIK 232 (347)
T ss_dssp BCTTCG--GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEEC
T ss_pred CCCCCC--ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEc
Confidence 443321 0000111234555555544210 0 01111 22443 456899999876 34332 233322332222
Q ss_pred CCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578 760 NLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822 (860)
Q Consensus 760 ~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i 822 (860)
.+. .++..+..+......++|.. |. +++..-..+.|....+...... ....
T Consensus 233 ~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~----------~~~e 300 (347)
T 3das_A 233 PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAA----------ADPQ 300 (347)
T ss_dssp TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEES----------SCCE
T ss_pred CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCcee----------cceE
Confidence 221 12334443334566777763 43 4555545566666665542210 1112
Q ss_pred EEecCccCceEEEEEccCCCeEEEEEe----------CCCeEeecc
Q psy4578 823 FIHGGHTAKISDFSWNPNEPWVICSVS----------EDNIMQKPF 858 (860)
Q Consensus 823 ~~~~~h~~~I~~i~~spdg~~Llasgs----------~Dg~IrI~f 858 (860)
..+.+..+.+.+++..|||..++++.. +|.++||.+
T Consensus 301 ~~l~~~~gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~ 346 (347)
T 3das_A 301 AFLEGEYGRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEV 346 (347)
T ss_dssp EESTTTSSCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred EeecCCCCCccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeC
Confidence 223344578999999999985555443 345777653
No 335
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.47 E-value=1.6 Score=35.13 Aligned_cols=43 Identities=30% Similarity=0.307 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcccccccchhhhhhhHHHhhhhhhhhhHHHHHhhhcc
Q psy4578 103 IKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFY 149 (860)
Q Consensus 103 i~~lk~~~k~k~~~~~~~~~r~~~~e~~~~~~~~~~~~~~~~~~~~~ 149 (860)
|.||+.+|+-|-|||.+-.-|+.-+||+|. +.|+.++.|+.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 899999999999999999999999999886 4667777777665
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.66 E-value=20 Score=42.36 Aligned_cols=159 Identities=10% Similarity=0.137 Sum_probs=80.1
Q ss_pred CCcEEEEEeCC----CcEEEEEcCCCCcccCee-e-----ccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccccc
Q psy4578 633 HESLFGSVADD----QKLMIWDTRSHNVSKPSH-T-----VDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 633 ~~~~lasgs~D----G~I~IWd~~~~~~~~~~~-~-----~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
++.+++.|+.+ ..+.+||..++. ...+. . ....... .+++..+ ++ .+++.||.++. .
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~---------~ 464 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDK-IDMKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAP---------H 464 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSC-EEEEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSST---------T
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCe-EEEeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCC---------C
Confidence 56677777643 357788887643 22222 1 1111111 2233332 34 46777776542 1
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeCCCCceeeEE----eccCCCce
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALWDLRNLKLKLHS----FESHKDEI 775 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl~~~~~~~~~----~~~h~~~V 775 (860)
..-..+.+||..+... ..+..+........++.+ .++. +++.|+.++ .+.+||..+....... ........
T Consensus 465 ~~~~dv~~yd~~t~~W-~~~~~~p~~R~~h~~~~~-~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 465 QGLSDNWIFDMKTREW-SMIKSLSHTRFRHSACSL-PDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp CBCCCCEEEETTTTEE-EECCCCSBCCBSCEEEEC-TTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred CccccEEEEeCCCCcE-EECCCCCCCcccceEEEE-cCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence 1223478888877421 111111111122222222 3555 678887654 7999999887652111 11112222
Q ss_pred EEEEEcCCCCCEEEEEEC--C-----CcEEEEECCCCC
Q psy4578 776 FQVQWSPHNETILASSGT--D-----RRLHVWDLSKIG 806 (860)
Q Consensus 776 ~~l~fsp~g~~lL~tgs~--D-----g~I~iWdl~~~~ 806 (860)
.++.+......+++.||. + +.+.+||+.+..
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 335556553346777775 2 458899988755
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=75.12 E-value=37 Score=35.11 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-C-----CcEEEEeCCCCceee-EEeccCCCceE
Q psy4578 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-D-----KTVALWDLRNLKLKL-HSFESHKDEIF 776 (860)
Q Consensus 704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-D-----g~I~IWDl~~~~~~~-~~~~~h~~~V~ 776 (860)
...+.+||..+... ..+..+........++. -++. +++.|+. + ..+.+||..+..... ..+........
T Consensus 116 ~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 116 LDSVMCYDRLSFKW-GESDPLPYVVYGHTVLS--HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp CCCEEEEETTTTEE-EECCCCSSCCBSCEEEE--ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred cceEEEECCCCCcE-eECCCCCCcccceeEEE--ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 34588888876531 11112211112222222 2344 6777776 2 468999998776411 11111111112
Q ss_pred EEEEcCCCCCEEEEEECCC-----cEEEEECCCC
Q psy4578 777 QVQWSPHNETILASSGTDR-----RLHVWDLSKI 805 (860)
Q Consensus 777 ~l~fsp~g~~lL~tgs~Dg-----~I~iWdl~~~ 805 (860)
++.+ ++ .+++.||.++ .+.+||+.+.
T Consensus 192 ~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 192 ATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEE--TT-EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEE--CC-EEEEEeccCCCCccceEEEEECCCC
Confidence 2222 44 4677777554 5788888764
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=71.65 E-value=18 Score=37.66 Aligned_cols=114 Identities=12% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCcEEEEEeCC-------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578 633 HESLFGSVADD-------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ 705 (860)
Q Consensus 633 ~~~~lasgs~D-------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg 705 (860)
++.+++.|+.+ ..+.+||..+.. ...+..+......-.++. . +..+++.|+.+.. .....
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~---------~~~~~ 175 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK-WSEVKNLPIKVYGHNVIS--H-NGMIYCLGGKTDD---------KKCTN 175 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE-EEEECCCSSCEESCEEEE--E-TTEEEEECCEESS---------SCBCC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC-EeECCCCCCcccccEEEE--E-CCEEEEEcCCCCC---------CCccc
Confidence 56777777754 247778876532 111111111111111122 2 2345666653211 11234
Q ss_pred cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCce
Q psy4578 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKL 763 (860)
Q Consensus 706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~ 763 (860)
.+.+||+.+... ..+..+........++.+ ++. +++.|+.+ ..+.+||..+...
T Consensus 176 ~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 176 RVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp CEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred eEEEEcCCCCEE-EECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCeE
Confidence 488899877531 222111111112222333 344 67777653 3477899887764
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=70.20 E-value=41 Score=34.74 Aligned_cols=155 Identities=10% Similarity=0.092 Sum_probs=69.9
Q ss_pred CCcEEEEEeC----CC-------cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578 633 HESLFGSVAD----DQ-------KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701 (860)
Q Consensus 633 ~~~~lasgs~----DG-------~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~ 701 (860)
++.+++.|+. ++ .+.+||..+.. ...+..+.........+.+ +..+++.|+.+.. ..
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~--------~~ 123 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-WVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQ--------TE 123 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTE-EEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTT--------TC
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCc-EEECCCCCccccccceEEE---CCEEEEEcCccCC--------CC
Confidence 6778887773 12 16677876532 1111111111111122222 3356777775420 00
Q ss_pred cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeE-EeccCCCc
Q psy4578 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLH-SFESHKDE 774 (860)
Q Consensus 702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~-~~~~h~~~ 774 (860)
.....+.+||..+... ..+..+........++. .++. +++.|+. -..+.+||..+...... ........
T Consensus 124 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 199 (318)
T 2woz_A 124 ASLDSVLCYDPVAAKW-SEVKNLPIKVYGHNVIS--HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM 199 (318)
T ss_dssp CEEEEEEEEETTTTEE-EEECCCSSCEESCEEEE--ETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred cccceEEEEeCCCCCE-eECCCCCCcccccEEEE--ECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc
Confidence 1123477888876421 11111111111112222 2444 6777764 24589999988764211 11111111
Q ss_pred eEEEEEcCCCCCEEEEEECC-----CcEEEEECCCCC
Q psy4578 775 IFQVQWSPHNETILASSGTD-----RRLHVWDLSKIG 806 (860)
Q Consensus 775 V~~l~fsp~g~~lL~tgs~D-----g~I~iWdl~~~~ 806 (860)
..++.+ ++ .+++.||.+ ..+.+||+.+..
T Consensus 200 ~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 200 FGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 122222 34 467777643 357788887643
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=69.87 E-value=91 Score=39.11 Aligned_cols=155 Identities=4% Similarity=0.056 Sum_probs=82.9
Q ss_pred hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578 619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698 (860)
Q Consensus 619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~ 698 (860)
...+.|++++-. ++.+++ |- ..+|++|++...+... .....+ ..|..+.....++. +++|..-..
T Consensus 883 ~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~-I~vgD~~~S------- 947 (1158)
T 3ei3_A 883 EVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDF-ILVGDLMRS------- 947 (1158)
T ss_dssp EESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTE-EEEEESSBC-------
T ss_pred EcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCE-EEEEEhhhe-------
Confidence 345778888765 355444 33 4689999997642211 111111 12332233234564 677766555
Q ss_pred ccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC-------cee--eEE
Q psy4578 699 EEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL-------KLK--LHS 767 (860)
Q Consensus 699 ~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~-------~~~--~~~ 767 (860)
+.++..+... ..+..+ ..+...++++.+-.++. ++.+..+|.+.+...... ... ...
T Consensus 948 --------v~~~~y~~~~--~~L~~~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~ 1015 (1158)
T 3ei3_A 948 --------VLLLAYKPME--GNFEEIARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDSAATTDEERQHLQEVGL 1015 (1158)
T ss_dssp --------EEEEEEETTT--TEEEEEEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECTTCCSTTGGGBEEEEEE
T ss_pred --------EEEEEEEcCC--CeEEEEEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCCCCCCccccceeeeEEE
Confidence 4443322211 222222 23456788888876553 677899999999876542 111 111
Q ss_pred eccCCCceEEEE---EcCCC--------CCEEEEEECCCcEEEEE
Q psy4578 768 FESHKDEIFQVQ---WSPHN--------ETILASSGTDRRLHVWD 801 (860)
Q Consensus 768 ~~~h~~~V~~l~---fsp~g--------~~lL~tgs~Dg~I~iWd 801 (860)
+. ....|+++. +.+.+ ...++.++.+|.|.+.-
T Consensus 1016 fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1016 FH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred Ee-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 21 234566665 33332 23467788899988764
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=65.95 E-value=25 Score=37.17 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=24.1
Q ss_pred cEEEEeCCCCcee-eEEeccCCCceEEEEEcCCCCCEEEEEECCC------cEEEEECCCCCc
Q psy4578 752 TVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDR------RLHVWDLSKIGE 807 (860)
Q Consensus 752 ~I~IWDl~~~~~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg------~I~iWdl~~~~~ 807 (860)
.+.+||..+.... +..+........++. .++. +++.||.++ .+.++++++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 5789999876642 112222122222222 3454 677787542 355557776443
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=64.72 E-value=29 Score=40.94 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCC--cEEEEEcCCCCcccCeee---ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578 633 HESLFGSVADDQ--KLMIWDTRSHNVSKPSHT---VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707 (860)
Q Consensus 633 ~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~---~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I 707 (860)
++.+++.|+.++ .+.+||..+.. ...+.. .........++.+......+++.|+.+.. .....+.+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~--------~~~~~~~v 570 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD--------QTTVSDKA 570 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT--------SSCBCCEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC--------CCeeeCcE
Confidence 677888887655 68899987642 121111 11112222345555553557777765321 01123458
Q ss_pred EEEeCCCCCC-----CCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeC--------CCcEEEEeCCCCce
Q psy4578 708 MIWDTRSHNV-----SKPSHTVD-AHTAEVNCLSFNPYSEYILATGSA--------DKTVALWDLRNLKL 763 (860)
Q Consensus 708 ~iwDl~~~~~-----~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~--------Dg~I~IWDl~~~~~ 763 (860)
.+||+.+... +..+.... .......++. ..++. +++.|+. ...+.+||..+...
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRK-LLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTE-EEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCE-EEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 8899887642 11221111 1111222232 32244 6777774 34699999988765
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=62.45 E-value=61 Score=33.96 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=15.0
Q ss_pred CCcEEEEEeC-C---------CcEEEEEcCCC
Q psy4578 633 HESLFGSVAD-D---------QKLMIWDTRSH 654 (860)
Q Consensus 633 ~~~~lasgs~-D---------G~I~IWd~~~~ 654 (860)
++.+++.|+. + ..+.+||..+.
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5667777765 2 45888888764
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=60.56 E-value=58 Score=36.27 Aligned_cols=115 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCC-cEEEEeeCCCcEEEEeCCCCc--eeeEEec---------cCCCceEEEEEcCC---CCCEEEEEEC-
Q psy4578 730 EVNCLSFNPYSE-YILATGSADKTVALWDLRNLK--LKLHSFE---------SHKDEIFQVQWSPH---NETILASSGT- 793 (860)
Q Consensus 730 ~I~sl~~sp~g~-~llasgs~Dg~I~IWDl~~~~--~~~~~~~---------~h~~~V~~l~fsp~---g~~lL~tgs~- 793 (860)
.-..|+|.|+|. . ++++...|.|++++..... ..+..+. ........|+|+|+ ..++.++-+.
T Consensus 15 ~P~~~a~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 457899999985 4 4455778999999754321 1122221 11356789999996 2234444332
Q ss_pred -C----------CcEEEEECCCCCcccccccccCCCCccEEEe----cCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578 794 -D----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH----GGHTAKISDFSWNPNEPWVICSVSEDN 852 (860)
Q Consensus 794 -D----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~----~~h~~~I~~i~~spdg~~Llasgs~Dg 852 (860)
+ ..|.-|.+...... ... ....+.+... ..| .-..|+|.|||. |.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~-~~d---~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~-LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPH-QVD---LRTARVFLEVAELHRKH--LGGQLLFGPDGF-LYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTT-SBC---GGGCEEEEEEEESSSSS--CEEEEEECTTSC-EEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCC-ccC---CCCceEEEEcCCCCCcc--cCCcEeECCCCc-EEEEeCCCC
Confidence 1 13444555432100 000 0001122211 234 357899999997 666666544
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=60.00 E-value=23 Score=40.34 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-----------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcE
Q psy4578 729 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-----------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797 (860)
Q Consensus 729 ~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-----------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I 797 (860)
....++..+|+|++++++|-.+.++.++|.+... ..+..-..-.......+|.++| +...|.--|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 3445788999999999999999999999987421 1111111234566789999999 445555589999
Q ss_pred EEEECCC
Q psy4578 798 HVWDLSK 804 (860)
Q Consensus 798 ~iWdl~~ 804 (860)
..|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999875
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=59.84 E-value=2.1e+02 Score=31.64 Aligned_cols=203 Identities=10% Similarity=0.101 Sum_probs=113.4
Q ss_pred ceeeeeeecceeecccceeEEEEeeccc-hhhhhhhhhcc-----cceeeeEeeccCCcEEEEEe------CCCcEEEEE
Q psy4578 583 KLFLNFFKQGYFKGTHHIEEVMYLENKT-RAQICQLLDKL-----RLLIDVAWHLLHESLFGSVA------DDQKLMIWD 650 (860)
Q Consensus 583 ~l~~~ll~~G~~~Gs~~l~~il~l~n~~-~~~l~~l~~~~-----~~V~~v~~sp~~~~~lasgs------~DG~I~IWd 650 (860)
..+|+......+ |-.. ...+|.|+.. .......++.+ ..|..-..+++...++++|- -.|.+.+|.
T Consensus 108 VvfWkWis~~~l-~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 108 VTFWKWISLNTV-ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp CCEEEEEETTEE-EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEecCCCeE-EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 446666544433 2222 2245666653 23344444433 34566666764333444442 347899999
Q ss_pred cCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCC---eeee-
Q psy4578 651 TRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP---SHTV- 724 (860)
Q Consensus 651 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~---~~~~- 724 (860)
.+. +..+.+.||.+....+....+ ...+++-+..... .++++|.++........ ....
T Consensus 186 ~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~------------g~kLhi~Ei~~~~~~~~~f~kk~vd 249 (494)
T 1bpo_A 186 VDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA------------GGKLHIIEVGTPPTGNQPFPKKAVD 249 (494)
T ss_dssp STT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT------------CCEEEEEECSCCCTTCCCCCCEEEE
T ss_pred ccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCC------------CcEEEEEEcCCCccCCCCccceeee
Confidence 985 445677788766655554321 1234444443321 35688888865310011 0010
Q ss_pred -----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578 725 -----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799 (860)
Q Consensus 725 -----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i 799 (860)
..-..--.++..++... ++..-+.-|.|++||+.++.+ +..-.-....|...+-+....- +++....|.|.-
T Consensus 250 v~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~ 326 (494)
T 1bpo_A 250 VFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLS 326 (494)
T ss_dssp CCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEE
T ss_pred eeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee-eeeecccCCceEEecccCCCCc-EEEEccCceEEE
Confidence 11123345677777666 566778889999999999997 5555555566665555544444 456668888877
Q ss_pred EECCCCC
Q psy4578 800 WDLSKIG 806 (860)
Q Consensus 800 Wdl~~~~ 806 (860)
-.++...
T Consensus 327 v~v~e~~ 333 (494)
T 1bpo_A 327 VCVEEEN 333 (494)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 7776643
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=58.37 E-value=1.9e+02 Score=37.07 Aligned_cols=202 Identities=9% Similarity=0.076 Sum_probs=104.3
Q ss_pred ceeeeeeecceeecccceeEEEEeeccc-hhhhhhhhhccc-----ceeeeEeeccCCcEEEEEe------CCCcEEEEE
Q psy4578 583 KLFLNFFKQGYFKGTHHIEEVMYLENKT-RAQICQLLDKLR-----LLIDVAWHLLHESLFGSVA------DDQKLMIWD 650 (860)
Q Consensus 583 ~l~~~ll~~G~~~Gs~~l~~il~l~n~~-~~~l~~l~~~~~-----~V~~v~~sp~~~~~lasgs------~DG~I~IWd 650 (860)
..+|+.+....+ |-... ..+|.|+.. .......+..+. .|..-.-+++...++++|- -.|.+.+|.
T Consensus 108 VvfWkWis~~~l-~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 108 VTFWKWISLNTV-ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred ceEEEecCCCee-EEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeee
Confidence 456665543333 22222 345666654 344555555443 3555555663334444443 358899999
Q ss_pred cCCCCcccCeeeccCCCCCeeEEEEc--cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee------
Q psy4578 651 TRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH------ 722 (860)
Q Consensus 651 ~~~~~~~~~~~~~~~h~~~V~~l~~s--p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~------ 722 (860)
++. +..+.+.||.+....+... +....+++-+....+ +++++|.++.......+..
T Consensus 186 ~er----~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~------------g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 186 VDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA------------GGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred ccc----ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCC------------CceEEEEecCCCccCCCCCcccccc
Confidence 875 3345667777666555443 222334444433211 2458888875431001100
Q ss_pred eec---CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578 723 TVD---AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799 (860)
Q Consensus 723 ~~~---~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i 799 (860)
.+. .-..--.++..++... ++..-+.-|.|.+||+.++.. +..-.-....|...+-+....- +++....|.|.-
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~-i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~ 326 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLS 326 (1630)
T ss_pred ccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchh-hhhccccCCceEEeccCCCCCc-eEEEcCCceEEE
Confidence 000 0122234566666655 466667889999999999886 4433333444444444433222 344556666666
Q ss_pred EECCCC
Q psy4578 800 WDLSKI 805 (860)
Q Consensus 800 Wdl~~~ 805 (860)
..+...
T Consensus 327 v~v~~~ 332 (1630)
T 1xi4_A 327 VCVEEE 332 (1630)
T ss_pred EEEccc
Confidence 655543
No 348
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=52.78 E-value=3.4e+02 Score=31.84 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=97.2
Q ss_pred eeeeE-eeccCCcEEEEEeCCC----cEEEEEcCCCCcccCeeecc--CCC-----CCeeEEEEccCCCeEEEEEeCCCc
Q psy4578 624 LIDVA-WHLLHESLFGSVADDQ----KLMIWDTRSHNVSKPSHTVD--AHT-----AEVNCLSFNPYSEYILATGSADKT 691 (860)
Q Consensus 624 V~~v~-~sp~~~~~lasgs~DG----~I~IWd~~~~~~~~~~~~~~--~h~-----~~V~~l~~sp~g~~llasgs~Dg~ 691 (860)
...+. ++|++...+++-|..| .++++|+.+++... ..+. ... .....++|. +++.++++ ...+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~--~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~-~~~~~ 206 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK--NGFEPITNSGKLLEGKFTYPTWI-NKDTIIFN-LVLHK 206 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT--TCSCCBCTTCCBCCEETCCEEEE-ETTEEEEC-CCCST
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC--CCcccccccccccccccceeeEE-CCCEEEEE-eCCCC
Confidence 34455 7775555566655544 59999999853221 0111 000 012345887 44443443 22221
Q ss_pred eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCe-EEEEEcCCCCc----EEEEeeCC---CcEEEEeCCCCce
Q psy4578 692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV-NCLSFNPYSEY----ILATGSAD---KTVALWDLRNLKL 763 (860)
Q Consensus 692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I-~sl~~sp~g~~----llasgs~D---g~I~IWDl~~~~~ 763 (860)
...+......+|+.|.+.+... .-...+.+....+ .+...++++.+ ++++.+.+ ..+.+.|......
T Consensus 207 ----~~~~~~~~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 281 (711)
T 4hvt_A 207 ----NEITSSLYPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL 281 (711)
T ss_dssp ----TCBCTTSSBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred ----CCcCcCCCCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence 0122233345688998876532 2222333333332 34455666664 45554422 4466666654222
Q ss_pred eeEEeccCCCceEEEEEcCCCCCEEEEE----------ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceE
Q psy4578 764 KLHSFESHKDEIFQVQWSPHNETILASS----------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833 (860)
Q Consensus 764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tg----------s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~ 833 (860)
....+...... .+..+..+. +++.. ...+.|...|+.+...... .......+. .......+.
T Consensus 282 ~~~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~l~ 353 (711)
T 4hvt_A 282 KLQKINMPSDA--TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES----DKTSLKILF-TPTANEVFN 353 (711)
T ss_dssp EEEECCSCTTC--EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG----GCTTCEEEE-CCCTTEEEE
T ss_pred cceEeecCCcc--eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCccccccc----ccccceEEE-CCCCCCeEE
Confidence 22223221211 123444554 33322 2467788888876321000 000011111 112234566
Q ss_pred EEEEccCCCeEEEEEeCCCeEe
Q psy4578 834 DFSWNPNEPWVICSVSEDNIMQ 855 (860)
Q Consensus 834 ~i~~spdg~~Llasgs~Dg~Ir 855 (860)
++.|..+ +++++...++.-+
T Consensus 354 ~~~~~~~--~l~~~~~~~~~~~ 373 (711)
T 4hvt_A 354 FISTTKD--RVFLATYDNVVAK 373 (711)
T ss_dssp EEEECSS--CEEEEEEETTEEE
T ss_pred EEEEECC--EEEEEEEECCEEE
Confidence 7777765 3566666666544
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=49.62 E-value=1.4e+02 Score=33.20 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=38.9
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc---------CCCCCeeEEEEccC---CCeEEEEEe
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD---------AHTAEVNCLSFNPY---SEYILATGS 687 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~---------~h~~~V~~l~~sp~---g~~llasgs 687 (860)
...-..|+|.|++...++++...|.|++++.........+..+. ...+....|+|+|+ +.+++++-+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 34567899999443234456788999999754321111222111 12456889999996 344555544
No 350
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.12 E-value=6.7 Score=30.92 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHhhccc-------ccccchhhhhhhHHHhhhh
Q psy4578 99 RERDIKDLKILLRSKQE-------EIGEISVRKDLAESKLANA 134 (860)
Q Consensus 99 ~~~~i~~lk~~~k~k~~-------~~~~~~~r~~~~e~~~~~~ 134 (860)
||.+|+.||--+++|.. |+=-++|--.++..||...
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 77777777777666643 3444556666666666544
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=45.82 E-value=2.9e+02 Score=29.13 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCC-CcEEEEeeCCCcEEEEeCCCCceeeEEecc-----C--------CCceEEEEEcCCCCCEEEEEECC
Q psy4578 729 AEVNCLSFNPYS-EYILATGSADKTVALWDLRNLKLKLHSFES-----H--------KDEIFQVQWSPHNETILASSGTD 794 (860)
Q Consensus 729 ~~I~sl~~sp~g-~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-----h--------~~~V~~l~fsp~g~~lL~tgs~D 794 (860)
..+.+|.++|.. .. +..|..++.|...+-.. .. ...... + ...+.++.++|.....++.++..
T Consensus 177 ~~i~~i~~d~~~~~~-l~vg~~~ggl~~s~DgG-~t-W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 177 PKMHSILVDPRDPKH-LYIGMSSGGVFESTDAG-TD-WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CEEEEEEECTTCTTC-EEEEEETBEEEEESSTT-SS-CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred CceeEEEECCCCCCE-EEEEECCCCEEEECCCC-CC-ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence 457899999843 33 44444444454443222 22 111110 0 12488999998743345566654
Q ss_pred C
Q psy4578 795 R 795 (860)
Q Consensus 795 g 795 (860)
+
T Consensus 254 g 254 (394)
T 3b7f_A 254 G 254 (394)
T ss_dssp E
T ss_pred e
Confidence 4
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.69 E-value=2e+02 Score=35.14 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578 730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763 (860)
Q Consensus 730 ~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~ 763 (860)
.+.+++..++..+ ++|-+.|+++|+|++.++.+
T Consensus 237 ~~~~~~~~~~~~~-lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTE-EEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcE-EEEEECCCEEEEEECCCCCe
Confidence 5677888887775 77889999999999999876
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.21 E-value=2.3e+02 Score=34.55 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 810 (860)
Q Consensus 774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~ 810 (860)
.+.+++..++.. +++|-+.|+++|+|++.++.+...
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEee
Confidence 567777777776 488999999999999999876554
No 354
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.00 E-value=3.4e+02 Score=32.20 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=38.3
Q ss_pred ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC----CCCCeeEEEEccCCCeEEEEE
Q psy4578 621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA----HTAEVNCLSFNPYSEYILATG 686 (860)
Q Consensus 621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~----h~~~V~~l~~sp~g~~llasg 686 (860)
.+.|.+|.++|.+...+.+++..|.|...+= .+.....+..... ....+.+|+++|.....+.++
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 3589999999977777777777776554432 2222222211010 124699999998654334444
No 355
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.98 E-value=9.1 Score=30.35 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=24.4
Q ss_pred CccccCccchhhhhhhhHHHHHHHHhhcccccccch
Q psy4578 86 PPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEIS 121 (860)
Q Consensus 86 ~p~~~ra~~~~~~~~~~i~~lk~~~k~k~~~~~~~~ 121 (860)
++++++-++.-..||..|+||...|.-|.+|+.+++
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556699999999999999999988876
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=37.94 E-value=3.8e+02 Score=28.19 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=26.2
Q ss_pred CcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccC-CCeEEEEE
Q psy4578 634 ESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATG 686 (860)
Q Consensus 634 ~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~-g~~llasg 686 (860)
...|..|+..| +.+++... +........ ......|.+|++.|. ...+++.+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~ 74 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAA 74 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEe
Confidence 45677777777 55555432 222222211 122457999999982 23344444
No 357
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=35.34 E-value=28 Score=27.24 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcccccccchhhhhhhH----------HHhhhhhhhhhHHHHHhhhcc
Q psy4578 103 IKDLKILLRSKQEEIGEISVRKDLAE----------SKLANAIRDKDYQEQKLKDFY 149 (860)
Q Consensus 103 i~~lk~~~k~k~~~~~~~~~r~~~~e----------~~~~~~~~~~~~~~~~~~~~~ 149 (860)
=|||-..|..||+||-+++|=.+-+- |||+......+-.+..|.-..
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 37888888899999988887665443 566655555555555555444
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=31.47 E-value=5.1e+02 Score=27.71 Aligned_cols=178 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCcc--cCeeeccCC------CCCeeEEEEc---cC----CCeEEEEEeCCCceeeecccccccCCCcEEE
Q psy4578 645 KLMIWDTRSHNVS--KPSHTVDAH------TAEVNCLSFN---PY----SEYILATGSADKTQFEVEEEEEENYDQKLMI 709 (860)
Q Consensus 645 ~I~IWd~~~~~~~--~~~~~~~~h------~~~V~~l~~s---p~----g~~llasgs~Dg~i~~~~~~~~~~~dg~I~i 709 (860)
+|.+||+.+ . +.++.+.-. ...+..+++. |. +.+..++-+..+. |.|
T Consensus 124 kLv~~DL~t---~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~g---------------LIV 185 (381)
T 3q6k_A 124 AIVAYDLKQ---PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGA---------------LFI 185 (381)
T ss_dssp EEEEEESSS---TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTE---------------EEE
T ss_pred eEEEEECCC---CCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCc---------------EEE
Q ss_pred EeCCCCCCCCCeeeecCCC---------------CCeEEEEEcCC----CCcEEEEeeCCCcEEEEeCC-----CCceee
Q psy4578 710 WDTRSHNVSKPSHTVDAHT---------------AEVNCLSFNPY----SEYILATGSADKTVALWDLR-----NLKLKL 765 (860)
Q Consensus 710 wDl~~~~~~~~~~~~~~h~---------------~~I~sl~~sp~----g~~llasgs~Dg~I~IWDl~-----~~~~~~ 765 (860)
+|+.+++..+......... ..+..++.+|+ ++.+....-....+.--..+ +....+
T Consensus 186 ydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v 265 (381)
T 3q6k_A 186 YDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP 265 (381)
T ss_dssp EETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC
T ss_pred EECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce
Q ss_pred EEeccCC--CceEEEEEcCCCCCEEEEEECCCcEEEEECCC-CCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578 766 HSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSK-IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842 (860)
Q Consensus 766 ~~~~~h~--~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~-~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~ 842 (860)
..+.... +.-..++..+....++++--..+.|..|+..+ .-..... ..+..-. .-..+.++.+..+|.
T Consensus 266 ~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~--------~~l~~d~-~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 266 ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNT--------DVVYTSS-RFVFGTDISVDSKGG 336 (381)
T ss_dssp EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGE--------EEEEECT-TCCSEEEEEECTTSC
T ss_pred EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCce--------EEEEECC-CccccCeEEECCCCe
Q ss_pred eEEEEEeC
Q psy4578 843 WVICSVSE 850 (860)
Q Consensus 843 ~Llasgs~ 850 (860)
|.+..+.
T Consensus 337 -Lwv~sn~ 343 (381)
T 3q6k_A 337 -LWFMSNG 343 (381)
T ss_dssp -EEEEECS
T ss_pred -EEEEECc
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=31.19 E-value=95 Score=35.45 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC------CCCCC----eeeecCCCCCeEEEEE
Q psy4578 667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH------NVSKP----SHTVDAHTAEVNCLSF 736 (860)
Q Consensus 667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~------~~~~~----~~~~~~h~~~I~sl~~ 736 (860)
......+..+|||++++++|-.+.+ +.++|++.- +...+ ..... -.......+|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLspt---------------vtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~F 385 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPT---------------CSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTF 385 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSB---------------EEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCe---------------EEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEE
Confidence 3456778999999998888887887 888888741 10011 11111 2345678899
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578 737 NPYSEYILATGSADKTVALWDLRN 760 (860)
Q Consensus 737 sp~g~~llasgs~Dg~I~IWDl~~ 760 (860)
.++|. ...|-.-|..|.-|++..
T Consensus 386 d~~G~-aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 386 DGRGN-AYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSSSE-EEEEETTTTEEEEEEHHH
T ss_pred CCCCc-eEeeeeecceEEEEeccH
Confidence 99994 566777899999999864
No 360
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.51 E-value=25 Score=27.69 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhcccccccchhhhhhhHHHhhhh
Q psy4578 101 RDIKDLKILLRSKQEEIGEISVRKDLAESKLANA 134 (860)
Q Consensus 101 ~~i~~lk~~~k~k~~~~~~~~~r~~~~e~~~~~~ 134 (860)
..|+-||+.|+.|.+||+.++=++.+--|..|..
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 3899999999999999998877776665555443
No 361
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.39 E-value=34 Score=31.63 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHhhcccccccchhhhhhhHHHhhhhhhhhhHHHHHh
Q psy4578 99 RERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKL 145 (860)
Q Consensus 99 ~~~~i~~lk~~~k~k~~~~~~~~~r~~~~e~~~~~~~~~~~~~~~~~ 145 (860)
++.+++|-.|.+-.=++|+..+++...++|.|+....+|++.=++|.
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666679999999999999999999999998777665
No 362
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.94 E-value=1.1e+02 Score=24.73 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=38.3
Q ss_pred HHHHHHHh--CCCccHHHHHhcCCCCHHHHHHHHHHHhhhcccEEe
Q psy4578 370 LIKLIKMY--SPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVI 413 (860)
Q Consensus 370 l~~~i~~~--~p~~s~~~ia~~~~~~l~~v~~~a~HLvyw~~a~iI 413 (860)
|.++++.+ ++..++.+||...+++...|++...+|.--|.++=+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 55666655 688999999999999999999999999999988666
No 363
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=23.50 E-value=1e+02 Score=32.75 Aligned_cols=67 Identities=4% Similarity=-0.047 Sum_probs=39.7
Q ss_pred EEEEe-eCCCcEEEEeCCCCceeeEEecc----CCCceEE---EEE------cCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578 743 ILATG-SADKTVALWDLRNLKLKLHSFES----HKDEIFQ---VQW------SPHNETILASSGTDRRLHVWDLSKIGEE 808 (860)
Q Consensus 743 llasg-s~Dg~I~IWDl~~~~~~~~~~~~----h~~~V~~---l~f------sp~g~~lL~tgs~Dg~I~iWdl~~~~~~ 808 (860)
+++.. +.||.+..+|..++... ..+.. ...++.. ... +.+| .+++|+.+|++...|..+++..
T Consensus 58 ~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g--~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 58 TLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDE--KVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp EEEECCSTTTEEEEEETTTEEEE-EEEEHHHHHTTCSEEEECC----------CCE--EEEECEEEEEEEEEETTTCCEE
T ss_pred EEEEEECCCCEEEEEECCCCcEE-eeeccccceeccccccCCCceeecccccccCC--EEEEEecCCEEEEEECCCCcEE
Confidence 34444 68999999998876542 22211 1222221 000 1233 4788999999999999988776
Q ss_pred cccc
Q psy4578 809 QSTE 812 (860)
Q Consensus 809 ~~~~ 812 (860)
....
T Consensus 135 W~~~ 138 (339)
T 2be1_A 135 SAFG 138 (339)
T ss_dssp EEES
T ss_pred EEEe
Confidence 5543
No 364
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=22.33 E-value=2e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhCCCccHHHHHhcCCCCHHHHHHHHHHHhhhcccEEeeecCCCceEEeCCCCCC
Q psy4578 367 STPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDAST 430 (860)
Q Consensus 367 ~~~l~~~i~~~~p~~s~~~ia~~~~~~l~~v~~~a~HLvyw~~a~iI~~l~~~nvY~vsp~~~~ 430 (860)
++.-.+++..+++..++.+||...+++...|.+...-|.-.|-+.-.. ..|.++|....
T Consensus 30 ~~~r~~Il~~L~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-----g~y~l~~~g~~ 88 (96)
T 1y0u_A 30 NPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-----ERWVVTDAGKI 88 (96)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-----CEEEECCCchH
Confidence 444444554445668999999999999999999999999998877654 29999987543
Done!