RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4578
(860 letters)
>gnl|CDD|217667 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
transport activity 3. This family, also known in yeasts
as Rmd11, complexes with NPR2, pfam06218. This complex
heterodimer is responsible for inactivating TORC1. an
evolutionarily conserved protein complex that controls
cell size via nutritional input signals, specifically,
in response to amino acid starvation.
Length = 424
Score = 222 bits (567), Expect = 2e-64
Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 37/333 (11%)
Query: 198 PTLVQSDIKDKDSNATLINIVFALH---AVARPSIVKCYYDLSKRLGKALKYEEERYNY- 253
+D S+ T+ N+VF L+ + + Y+ + K+L ALKYE+++ +Y
Sbjct: 90 DPASDPSSEDSKSSMTMFNVVFILNPPLIEYNYRVDEMYHHVIKKLSLALKYEQQKSDYV 149
Query: 254 -----ALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKIN 308
+ A + V ++ + + YE I+ +S +A+ +K Y+ + TSG+ ++IN
Sbjct: 150 WKECKKILALKEKVREQSQKLESL----YEEILSKSSLARALKDCYESISTSGIANLEIN 205
Query: 309 KNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKN----------------LKPYHGLLLL 352
+ +S +P K + ++P L + + LKPY LLLL
Sbjct: 206 NDKTVSLQIPIKTEFHSLPQLTVDPVLPGSWLTSANSLSADENVRSDEDILKPYFALLLL 265
Query: 353 TEPTRLLDSLYPDSSTP---LIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGK 409
+ +++ L S+P L K I+ P KS+ L+ + LPL ++ SL L+YW +
Sbjct: 266 DDEKKIIKDLPTADSSPALALAKFIRHIKPTKSLLQLAQSSGLPLSQVFSLALHLIYWRR 325
Query: 410 ASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGH-SLLHEISEFS-LPISLKHRIS 467
A I+PL + NVY+V+ +A SL E F FP SL ++ S P I
Sbjct: 326 ARAIYPLSSRNVYIVSPNAPLSKLYSLAEAFKAQFPTLPSLPSFLALLSGKPRPFATFIP 385
Query: 468 PLSYPHEQREISQMIVWMLQHRLLMQLHTYMFL 500
+ +M+ W+L+H + QLHT+++L
Sbjct: 386 S---KDHRPIYLEMLAWLLRHGYVTQLHTFVYL 415
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 119 bits (301), Expect = 8e-30
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701
D+ + +WD + K T+ HT VN ++F+P ++ A+ S D T
Sbjct: 113 RDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGT---------- 158
Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
+ +WD R+ K T+ HT EVN ++F+P L + S+D T+ LWDL
Sbjct: 159 -----IKLWDLRT---GKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG 209
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
K L + H++ + V +SP +LAS D + VWDL E
Sbjct: 210 KC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT--------------GEC 253
Query: 822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
+ GHT ++ +W+P+ + S S D +
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTI 285
Score = 106 bits (266), Expect = 4e-25
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 40/228 (17%)
Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 686
VA+ L + + D + +WD + + T+ HT V ++ + Y LA+G
Sbjct: 15 VAFSP-DGKLLATGSGDGTIKVWDLET---GELLRTLKGHTGPVRDVAASADGTY-LASG 69
Query: 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 746
S+DKT + +WD + + T+ HT+ V+ ++F+P IL++
Sbjct: 70 SSDKT---------------IRLWDLET---GECVRTLTGHTSYVSSVAFSP-DGRILSS 110
Query: 747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 806
S DKT+ +WD+ K + H D + V +SP T +ASS D + +WDL
Sbjct: 111 SSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK 168
Query: 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
+ GHT +++ +++P+ ++ S S+ I
Sbjct: 169 CVAT--------------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
Score = 105 bits (263), Expect = 7e-25
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS 718
T+ HT V C++F+P + LATGS D T + +WD +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGT---------------IKVWDLET---G 41
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
+ T+ HT V ++ + Y LA+GS+DKT+ LWDL + + + H + V
Sbjct: 42 ELLRTLKGHTGPVRDVAASADGTY-LASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSV 99
Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838
+SP IL+SS D+ + VWD+ + GHT ++ +++
Sbjct: 100 AFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLR--------------GHTDWVNSVAFS 144
Query: 839 PNEPWVICSVSEDNIM 854
P+ + S S+D +
Sbjct: 145 PD-GTFVASSSQDGTI 159
Score = 102 bits (255), Expect = 9e-24
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 626 DVAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 684
VA+ + F + + D + +WD R+ K T+ HT EVN ++F+P L
Sbjct: 140 SVAFS--PDGTFVASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSP-DGEKLL 193
Query: 685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744
+ S+D T + +WD + K T+ H VN ++F+P Y+L
Sbjct: 194 SSSSDGT---------------IKLWDLST---GKCLGTLRGHENGVNSVAFSP-DGYLL 234
Query: 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
A+GS D T+ +WDLR + + + H + + + WSP + LAS D + +WD
Sbjct: 235 ASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 99.4 bits (246), Expect = 8e-22
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 35/230 (15%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
+A+ + L + D + +WD R+ KP T+ HT V+ L+F+P ++A+
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GS+D T + +WD + + + T+ H+ V SF+P LA
Sbjct: 217 GSSDGT---------------IRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSL-LA 257
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
+GS+D T+ LWDLR+ L + H + V +SP + +LAS +D + +WDL
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET- 315
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
G GH +S S++P+ ++ S+D ++
Sbjct: 316 -----------GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Score = 92.5 bits (228), Expect = 1e-19
Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 40/336 (11%)
Query: 517 PDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPST 576
L + + + + + +L LA + L S LL ++
Sbjct: 11 NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70
Query: 577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESL 636
+ L GT + ++ E ++ + L + + L
Sbjct: 71 IAFSPDGELLLSGS---SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-PDGNSIL 126
Query: 637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696
S + D + +WD K T++ H+ V L+F+P + + + S D T
Sbjct: 127 LASSSLDGTVKLWDLS--TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT----- 179
Query: 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 756
+ +WD R+ KP T+ HT V+ L+F+P ++A+GS+D T+ LW
Sbjct: 180 ----------IKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
DL KL + H D + +SP + ++LAS +D + +WDL
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSP-DGSLLASGSSDGTIRLWDLRSSS---------- 274
Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
LL GH++ + +++P+ + S S D
Sbjct: 275 ---SLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDG 306
Score = 82.1 bits (201), Expect = 3e-16
Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 33/208 (15%)
Query: 650 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMI 709
D+ S + H + ++F+P E +L+ S D + +
Sbjct: 48 DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSS----------------DGTIKL 91
Query: 710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHS 767
WD + S H + V+ L+ + + +LA+ S D TV LWDL + +
Sbjct: 92 WDLDNGEKLIKSLEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
E H + + + +SP + + + S D + +WDL + L G
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------GKPLSTLAG 196
Query: 828 HTAKISDFSWNPNEPWVICSVSEDNIMQ 855
HT +S +++P+ +I S S D ++
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIR 224
Score = 77.4 bits (189), Expect = 8e-15
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694
SL S + D + +WD RS S T+ H++ V ++F+P + LA+GS+D T
Sbjct: 254 SLLASGSSDGTIRLWDLRSS--SSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT--- 307
Query: 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
+ +WD + + S T+ H V+ LSF+P +++ GS D T+
Sbjct: 308 ------------VRLWDLETGKLLS-SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
LWDLR K + V +SP + +++S TD + +WDLS ++ +
Sbjct: 355 LWDLRTGKPLK--TLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
Query: 815 EDGPPELLFIHGGH-----TAKISDFSWNPNEPWVICSVSEDNI 853
L F G ++ + W+ S S D
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGK 455
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
+++ L +DD + +WD R+ KP T++ H+ V +SF+P ++++
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRT---GKPLKTLEGHS-NVLSVSFSP-DGRVVSS 387
Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
GS D T + +WD + +D HT+ V L F+P + + A
Sbjct: 388 GSTDGT---------------VRLWDLST---GSLLRNLDGHTSRVTSLDFSPDGKSL-A 428
Query: 746 TGSADKTVALWDLRNLKLKLH 766
+GS+D T+ LWDL+ +
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVS 449
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 57.7 bits (139), Expect = 2e-08
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 720 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRN-------LKLKLHSFESH 771
P + HT+ + L FNP +SE ILA+GS D T+ +W++ + +K + H
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
K +I + W+P N I+ SSG D +++WD+
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 53.0 bits (127), Expect = 5e-07
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 659 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN- 716
P + HT+ + L FNP +SE ILA+GS D T + +W+ HN
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSE-ILASGSEDLT---------------IRVWEIP-HND 108
Query: 717 -----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762
+ P + H +++ + +NP + YI+ + D V +WD+ N K
Sbjct: 109 ESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
Score = 46.1 bits (109), Expect = 7e-05
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820
+KLK H I +Q++P ILAS D + VW++ ++S ++ +D
Sbjct: 68 IKLK-----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH--NDESVKEIKDP--- 117
Query: 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
I GH KIS WNP +++CS D+
Sbjct: 118 -QCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148
Score = 44.6 bits (105), Expect = 2e-04
Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 41/197 (20%)
Query: 603 VMYLENKTR-AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN------ 655
+ LEN+ R + +L ++D+ ++ + S ++D + +W+ HN
Sbjct: 55 AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIP-HNDESVKE 113
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ--FEVEEEE---EENYDQKL--M 708
+ P + H +++ + +NP + YI+ + D +++E E+ + N +KL +
Sbjct: 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL 173
Query: 709 IWDTRSHNVS-----KPSHTVDAHTAEVNCLSFNPYS-----------------EYILAT 746
W+ + + +S K H +D E+ SF+ + YIL+T
Sbjct: 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232
Query: 747 GSAD---KTVALWDLRN 760
G + + + LWDL+N
Sbjct: 233 GFSKNNMREMKLWDLKN 249
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 49.3 bits (118), Expect = 5e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
K T+ HT V ++F+P LA+GS D TV +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
L + + H + V +SP + +LAS D + VWD
Sbjct: 3 LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 40.4 bits (95), Expect = 7e-05
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
K T+ HT V ++F+P LA+GS D T
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGT 34
Score = 31.2 bits (71), Expect = 0.13
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
+LL GHT ++ +++P+ + S S+D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDG 33
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 48.5 bits (116), Expect = 1e-07
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
+ T+ HT V ++F+P +Y LA+GS D T+ LWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40
Score = 42.7 bits (101), Expect = 1e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
L + + H + V +SP LAS D + +WD
Sbjct: 5 LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
+ T+ HT V ++F+P +Y LA+GS D T
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGT 35
Score = 29.6 bits (67), Expect = 0.52
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 818 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
ELL GHT ++ +++P+ ++ S S+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDG 34
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 49.5 bits (118), Expect = 5e-06
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 28/198 (14%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTR----SHNVSKPSHTVDAHTAEVNCLSFNPYS 679
+IDVA++ + ++D +M W + N+S P + HT +V +SF+P +
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 739
+LA+ AD + +WD K + H+ ++ L +N
Sbjct: 138 MNVLASAGADMV---------------VNVWDV---ERGKAVEVIKCHSDQITSLEWN-L 178
Query: 740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILA---SSGTDR 795
+L T S DK + + D R+ + + S E+H Q W+ + I+ S R
Sbjct: 179 DGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237
Query: 796 RLHVWDLSKIGEEQSTED 813
++ +WD K+ ST D
Sbjct: 238 QIMLWDTRKMASPYSTVD 255
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 48.2 bits (114), Expect = 2e-05
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 26/181 (14%)
Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWD-TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682
L + W+ +S S + + +WD RS V++ + H V + ++ +
Sbjct: 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE----MKEHEKRVWSIDYSSADPTL 590
Query: 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 742
LA+GS D + + + +Q + I ++ A + C+ F S
Sbjct: 591 LASGSDDGSV------KLWSINQGVSIGTIKT-------------KANICCVQFPSESGR 631
Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
LA GSAD V +DLRN KL L + H + V++ + + L SS TD L +WDL
Sbjct: 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDL 689
Query: 803 S 803
S
Sbjct: 690 S 690
Score = 33.5 bits (76), Expect = 0.53
Identities = 16/79 (20%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 785
A ++++ + +N Y + +A+ + + V +WD+ +L + + H+ ++ + +S +
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADP 588
Query: 786 TILASSGTDRRLHVWDLSK 804
T+LAS D + +W +++
Sbjct: 589 TLLASGSDDGSVKLWSINQ 607
>gnl|CDD|218942 pfam06218, NPR2, Nitrogen permease regulator 2. This family of
regulators are involved in post-translational control of
nitrogen permease.
Length = 400
Score = 35.8 bits (83), Expect = 0.11
Identities = 66/338 (19%), Positives = 119/338 (35%), Gaps = 75/338 (22%)
Query: 187 LKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKY 246
+K N+ R +G+P +++ + NA L N F A S Y KRLGK L+
Sbjct: 57 VKANKYRIIGYPVNIENSKYAR--NAFLFNFCFVFPYDADTS---PYEPAVKRLGKMLRV 111
Query: 247 EEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIK 306
EE+ + LS E+ +S I I+++ ++L I
Sbjct: 112 LEEQSQF---------LSKEEKDPSF--------FDKSSIESLIEQILEDLNNYSECTIP 154
Query: 307 INKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDS 366
I+ + + K + P +K + +L L+ L +
Sbjct: 155 IDDANT-----------IDIKLFPILPPPP-----PIKSHQVPILTVN----LEDLVDVN 194
Query: 367 STP-LIKLIKMYSPLKSIQTLS--ADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYV 423
+ K++ + + S+ ++ AD LV S I LVY+G ++ SN+Y
Sbjct: 195 WDLTMQKILPYINGINSVARIAALADVDYNLV--KSCIQHLVYYGCVILLDIFQFSNIYA 252
Query: 424 VAQDASTHTNSSLVEKFMQ-------AFPGHSLLHEISE-----------FSLPISLKHR 465
+++ + L + M PG +L S F L SL
Sbjct: 253 ----PTSNIGNFLTDPDMAEECQAYVTTPGSNLGRASSSSTRTLPSRATLFQLYRSLSQG 308
Query: 466 ISPLSYPHEQREISQ------MIVWMLQHRLLMQLHTY 497
+ + E + I + + L+ ++H Y
Sbjct: 309 QTLKEWYKENCKQLNGIDVRRFITFGVIKGLIYRVHKY 346
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff [Protein synthesis, tRNA aminoacylation].
Length = 397
Score = 34.4 bits (80), Expect = 0.26
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 99 RERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFY-IAPENSKV 157
R + L L +++GE SVR+ N +R D + +K+++ AP+
Sbjct: 168 RLEYREALLRYLDKHLDKLGEDSVRR-----LEKNPLRILDSKNEKIQELLKEAPK---- 218
Query: 158 HTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLV 201
L L +E+ + +K L I+ P+LV
Sbjct: 219 ---ILDFLDEESRAHFEELKELLDALGIPYVID-------PSLV 252
>gnl|CDD|215809 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.
Length = 454
Score = 33.8 bits (78), Expect = 0.38
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 641 ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 680
D + IWDT H P H +V C S++ Y E
Sbjct: 26 EDGKGPSIWDTFCHT---PGKVFGGHNGDVACDSYHRYKE 62
Score = 31.9 bits (73), Expect = 1.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
IWDT H P H +V C S++ Y E
Sbjct: 33 IWDTFCHT---PGKVFGGHNGDVACDSYHRYKE 62
>gnl|CDD|184858 PRK14856, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 438
Score = 33.6 bits (77), Expect = 0.49
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 313 LSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSS---TP 369
L+F +P K+ K + EL++ + + G LL E +L S+ +S +P
Sbjct: 241 LAFMIPVKI-PKDSKNV----ELLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSP 295
Query: 370 LIKLIKMYSPL 380
L +L +P+
Sbjct: 296 LERLEHFLAPI 306
>gnl|CDD|234180 TIGR03356, BGL, beta-galactosidase.
Length = 426
Score = 33.4 bits (77), Expect = 0.51
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 638 GSVADDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 680
G+V +D + IWDT SH P D T +V C ++ Y E
Sbjct: 17 GAVNEDGRGPSIWDTFSH---TPGKVKDGDTGDVACDHYHRYEE 57
Score = 30.7 bits (70), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
IWDT SH P D T +V C ++ Y E
Sbjct: 28 IWDTFSH---TPGKVKDGDTGDVACDHYHRYEE 57
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.0 bits (73), Expect = 0.96
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 96 KVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPENS 155
E +++DL+ + + EI EI R AE KL+ +++ + IA E
Sbjct: 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL-RALNIEIQIAKERI 105
Query: 156 KVHTDCLTSLSDE----------ALSTLFAVKADLVD--QKFELKINEVRFVGHPTLVQS 203
D L L +E L ++ +L + + E ++ E+R G +
Sbjct: 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165
Query: 204 D 204
+
Sbjct: 166 E 166
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 31.9 bits (72), Expect = 1.6
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT 723
+AH +N +SFN E +L SAD + + E D I D + HN+ +
Sbjct: 169 NAHPYHINSISFNSDKETLL---SADDLRINLWNLEII--DGSFNIVDIKPHNMEE---- 219
Query: 724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS---FESHKDE------ 774
T + F+P + S+ + L DLR L +S FE D
Sbjct: 220 ---LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF 276
Query: 775 ------IFQVQWSPHNETILASS 791
I ++S + IL+
Sbjct: 277 EEIVSSISDFKFSDNGRYILSRD 299
>gnl|CDD|224750 COG1837, COG1837, Predicted RNA-binding protein (contains KH
domain) [General function prediction only].
Length = 76
Score = 29.1 bits (66), Expect = 1.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 87 PLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIR 136
PL+ P++ +V E K + I LR E++G++ + + + AIR
Sbjct: 11 PLVDNPDDVRVDEEEGEKTVTIELRVAPEDMGKVIGK----QGRTIQAIR 56
>gnl|CDD|193114 pfam12636, DUF3781, Protein of unknown function (DUF3781). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 82 and 98
amino acids in length. There are two conserved sequence
motifs: GKNWY and ITA.
Length = 73
Score = 28.4 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 295 DELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPE-LIDKCMKN 342
D L T+ L +I KN LS + +CK +++P I + KN
Sbjct: 6 DRLHTTELGAERIKKN--LSLDTDDVIE--WCKKKILDPNAKITRKGKN 50
>gnl|CDD|189017 cd09610, M3B_PepF_5, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 472
Score = 29.9 bits (68), Expect = 6.2
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 26/95 (27%)
Query: 191 EVRFVGHPTLVQS-----DIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALK 245
E R G+ + S ++ + LI +V A +V YY L +L L
Sbjct: 131 EDRLRGYKHPISSRNLANEV-SDEVVDLLIAVV-----TANYPLVHRYYRLKAKL---LG 181
Query: 246 YEE----ERY--------NYALQAAHDIVLSSLEE 268
E+ +RY Y + A ++VL +
Sbjct: 182 VEKLYDYDRYAPLPTKSRTYTWEEAKELVLDAYGS 216
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a
nucleoporin that is crucial for nuclear pore complex
(NPC) biogenesis. The N terminal forms a seven-bladed
beta propeller structure. This family now contains other
sized nucleoporins, including Nup155, Nup8, Nuo132,
Nup15 and Nup170.
Length = 411
Score = 29.7 bits (67), Expect = 7.6
Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 38/161 (23%)
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-------GSADKTVALWDLR--------- 759
+ +V AE IL+T ++ + +L+
Sbjct: 121 KLLNGELSVSVVNAEPAG--------IILSTSTGRIFFLGIRDSIGIPELQYQQLSSKCS 172
Query: 760 --NLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE------- 807
L S EI ++ +L + + + VWDLS GE
Sbjct: 173 KIGLTSASIFSSLVPSSDREIVSLRVDSSRGRLLYTLTSKGTIRVWDLSPSGEKLVREVD 232
Query: 808 --EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846
E D ++ P+ + KI D S P+ +
Sbjct: 233 IYEIILRDLQESIPKSASTLSSKSLKILDISPIPSGESSLL 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,950,392
Number of extensions: 4204566
Number of successful extensions: 3754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3663
Number of HSP's successfully gapped: 63
Length of query: 860
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 755
Effective length of database: 6,280,432
Effective search space: 4741726160
Effective search space used: 4741726160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)