BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4579
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 110/122 (90%), Positives = 122/122 (100%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+D+SIHRL+LGTHTSDEQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIE
Sbjct: 59 KDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIE 118
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARYMPQNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQK
Sbjct: 119 IKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQK 178
Query: 355 EG 356
EG
Sbjct: 179 EG 180
Score = 227 bits (578), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 204/378 (53%), Gaps = 88/378 (23%)
Query: 7 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDA 66
FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT + D
Sbjct: 8 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPE------GKDF 61
Query: 67 SNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYD 126
S + GTHTSDEQNHL+IASVQLPN+ DAQFDAS+YD
Sbjct: 62 SIHRLVLGTHTSDEQNHLVIASVQLPND----------------------DAQFDASHYD 99
Query: 127 TDKGGYG--------------------------LSWNPSLNGYLLSASDDHTICLWDINA 160
++KG +G + NP + +SD + ++D
Sbjct: 100 SEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSD---VLVFDYTK 156
Query: 161 TPKE---NRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKE 217
P + + + GH + YGLSWNP+L+G+LLSASDDHTICLWDI+A PKE
Sbjct: 157 HPSKPDPSGECNPDLRLRGHQ---KEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE 213
Query: 218 NRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDA---QFDA 271
+V+DAKTIFTGHTAVVED S H L + G+ D++ L+I + N DA
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK--LMIWDTRSNNTSKPSHSVDA 271
Query: 272 SNYDTDKGDFGGF-------GSVSGKI------EIEIKI----NHEGEVNRARYMPQNPC 314
+ + F + GS + +++K+ +H+ E+ + ++ P N
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 315 VIATKTPSSDVLVFDYTK 332
++A+ + V+D +K
Sbjct: 332 ILASSGTDRRLNVWDLSK 349
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTAVVEVRYGLSWNPS 192
LS+NP L + S D T+ LWD+ R + K F H + + + W+P
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDL-------RNLKLKLHSFESHKDEI---FQVQWSPH 328
Query: 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEDYS 238
L S+ D + +WD++ +E DA+ I GHTA + D+S
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFS 381
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 321 FQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS-- 378
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDI 211
SWNP+ + S S+D+ + +W +
Sbjct: 379 -DFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/122 (89%), Positives = 117/122 (95%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+DYS+HRLILGTHTSDEQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIE
Sbjct: 65 KDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 124
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARYMPQN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQK
Sbjct: 125 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK 184
Query: 355 EG 356
EG
Sbjct: 185 EG 186
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 203/373 (54%), Gaps = 78/373 (20%)
Query: 7 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDA 66
FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT +D + D
Sbjct: 14 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-----KQDGK-DY 67
Query: 67 SNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYD 126
S + GTHTSDEQNHLLIASVQLP+E DAQFD S+YD
Sbjct: 68 SVHRLILGTHTSDEQNHLLIASVQLPSE----------------------DAQFDGSHYD 105
Query: 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--------FTGHT 178
+KG +G + + +H + P+ VI KT +T H
Sbjct: 106 NEKGEFG-GFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHP 164
Query: 179 AVVEVR----------------YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 222
+ E YGLSWNP+LNGYLLSASDDHTICLWDINATPKE+RVID
Sbjct: 165 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 224
Query: 223 AKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDA---QFDASNYDT 276
AK IFTGHTAVVED + H L + G+ D++ L+I + N DA +
Sbjct: 225 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNTSKPSHTVDAHTAEV 282
Query: 277 DKGDFGGF-------GSVSGKI------EIEIKI----NHEGEVNRARYMPQNPCVIATK 319
+ F + GS + +++K+ +H+ E+ + ++ P N ++A+
Sbjct: 283 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 342
Query: 320 TPSSDVLVFDYTK 332
+ V+D +K
Sbjct: 343 GTDRRLHVWDLSK 355
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTAVVEVRYGLSWNPS 192
LS+NP L + S D T+ LWD+ R + K F H + + + W+P
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDL-------RNLKLKLHSFESHKDEI---FQVQWSPH 334
Query: 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEDYS 238
L S+ D + +WD++ +E DA+ I GHTA + D+S
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 387
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 327 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-- 384
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDI 211
SWNP+ + S S+D+ + +W +
Sbjct: 385 -DFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/122 (89%), Positives = 117/122 (95%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+DYS+HRLILGTHTSDEQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIE
Sbjct: 63 KDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 122
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARYMPQN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQK
Sbjct: 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK 182
Query: 355 EG 356
EG
Sbjct: 183 EG 184
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 203/373 (54%), Gaps = 78/373 (20%)
Query: 7 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDA 66
FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT +D + D
Sbjct: 12 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTK-----QDGK-DY 65
Query: 67 SNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYD 126
S + GTHTSDEQNHLLIASVQLP+E DAQFD S+YD
Sbjct: 66 SVHRLILGTHTSDEQNHLLIASVQLPSE----------------------DAQFDGSHYD 103
Query: 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--------FTGHT 178
+KG +G + + +H + P+ VI KT +T H
Sbjct: 104 NEKGEFG-GFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHP 162
Query: 179 AVVEVR----------------YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 222
+ E YGLSWNP+LNGYLLSASDDHTICLWDINATPKE+RVID
Sbjct: 163 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 222
Query: 223 AKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDA---QFDASNYDT 276
AK IFTGHTAVVED + H L + G+ D++ L+I + N DA +
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNTSKPSHTVDAHTAEV 280
Query: 277 DKGDFGGF-------GSVSGKI------EIEIKI----NHEGEVNRARYMPQNPCVIATK 319
+ F + GS + +++K+ +H+ E+ + ++ P N ++A+
Sbjct: 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Query: 320 TPSSDVLVFDYTK 332
+ V+D +K
Sbjct: 341 GTDRRLHVWDLSK 353
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTAVVEVRYGLSWNPS 192
LS+NP L + S D T+ LWD+ R + K F H + + + W+P
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDL-------RNLKLKLHSFESHKDEI---FQVQWSPH 332
Query: 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEDYS 238
L S+ D + +WD++ +E DA+ I GHTA + D+S
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 385
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-- 382
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDI 211
SWNP+ + S S+D+ + +W +
Sbjct: 383 -DFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/122 (89%), Positives = 117/122 (95%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+DYS+HRLILGTHTSDEQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIE
Sbjct: 67 KDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 126
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARYMPQN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQK
Sbjct: 127 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK 186
Query: 355 EG 356
EG
Sbjct: 187 EG 188
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 203/373 (54%), Gaps = 78/373 (20%)
Query: 7 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDA 66
FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT +D + D
Sbjct: 16 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTK-----QDGK-DY 69
Query: 67 SNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYD 126
S + GTHTSDEQNHLLIASVQLP+E DAQFD S+YD
Sbjct: 70 SVHRLILGTHTSDEQNHLLIASVQLPSE----------------------DAQFDGSHYD 107
Query: 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--------FTGHT 178
+KG +G + + +H + P+ VI KT +T H
Sbjct: 108 NEKGEFG-GFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHP 166
Query: 179 AVVEVR----------------YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 222
+ E YGLSWNP+LNGYLLSASDDHTICLWDINATPKE+RVID
Sbjct: 167 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 226
Query: 223 AKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDA---QFDASNYDT 276
AK IFTGHTAVVED + H L + G+ D++ L+I + N DA +
Sbjct: 227 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNTSKPSHTVDAHTAEV 284
Query: 277 DKGDFGGF-------GSVSGKI------EIEIKI----NHEGEVNRARYMPQNPCVIATK 319
+ F + GS + +++K+ +H+ E+ + ++ P N ++A+
Sbjct: 285 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 344
Query: 320 TPSSDVLVFDYTK 332
+ V+D +K
Sbjct: 345 GTDRRLHVWDLSK 357
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 34/193 (17%)
Query: 58 PNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQ----FDASNYDTDKGGNVQL 113
P E DA N T D HLL S+ D Q +D N +T K +
Sbjct: 219 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-- 276
Query: 114 PNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT- 172
DA + + LS+NP L + S D T+ LWD+ R + K
Sbjct: 277 ------VDAHTAEVN----CLSFNPYSEFILATGSADKTVALWDL-------RNLKLKLH 319
Query: 173 IFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT------- 225
F H + + + W+P L S+ D + +WD++ +E DA+
Sbjct: 320 SFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 226 IFTGHTAVVEDYS 238
I GHTA + D+S
Sbjct: 377 IHGGHTAKISDFS 389
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 329 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-- 386
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDI 211
SWNP+ + S S+D+ + +W +
Sbjct: 387 -DFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/122 (81%), Positives = 116/122 (95%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+DY++H L+LGTHTSDEQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE E
Sbjct: 61 KDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECE 120
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARYMPQNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQK
Sbjct: 121 IKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQK 180
Query: 355 EG 356
EG
Sbjct: 181 EG 182
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 197/380 (51%), Gaps = 86/380 (22%)
Query: 4 KKPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQ 63
K+ F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT +
Sbjct: 7 KEXFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGK----- 61
Query: 64 FDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDAS 123
D + + GTHTSDEQNHL++A V +PN+DAQFDAS
Sbjct: 62 -DYALHWLVLGTHTSDEQNHLVVA----------------------RVHIPNDDAQFDAS 98
Query: 124 NYDTDKGGYG--------------------------LSWNPSLNGYLLSASDDHTICLWD 157
+ D+DKG +G + NP + +SD + ++D
Sbjct: 99 HCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSD---VLVFD 155
Query: 158 IN---ATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214
A P + + GH + YGLSWN +L+G+LLSASDDHT+CLWDINA
Sbjct: 156 YTKHPAKPDPSGECNPDLRLRGHQ---KEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG 212
Query: 215 PKENRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQ--------------NHLLI 257
PKE +++DAK IFTGH+AVVED + H L + G+ D++ +HL+
Sbjct: 213 PKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD 272
Query: 258 ASVQLPN-----EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQN 312
A N ++F + DK + + K+++ +H+ E+ + + P N
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHN 331
Query: 313 PCVIATKTPSSDVLVFDYTK 332
++A+ + V+D +K
Sbjct: 332 ETILASSGTDRRLNVWDLSK 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
LS+NP L + S D T+ LWD+ N + T F H + + + W+P
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDL-----RNLKLKLHT-FESHKDEI---FQVHWSPHN 331
Query: 194 NGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEDYS 238
L S+ D + +WD++ +E DA+ I GHTA + D+S
Sbjct: 332 ETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 383
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS-- 380
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDI 211
SWNP+ + S S+D+ + +W +
Sbjct: 381 -DFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/122 (81%), Positives = 115/122 (94%)
Query: 235 EDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294
+DY++H L+LGTHTSDEQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE E
Sbjct: 61 KDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECE 120
Query: 295 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354
IKINHEGEVNRARY PQNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQK
Sbjct: 121 IKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQK 180
Query: 355 EG 356
EG
Sbjct: 181 EG 182
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 196/375 (52%), Gaps = 76/375 (20%)
Query: 4 KKPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQ 63
K+ F+D VEERVINEEYKIWKKNTPFLYDLV THAL+WPSLT QWLP+VT +
Sbjct: 7 KEXFEDTVEERVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGK----- 61
Query: 64 FDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDAS 123
D + + GTHTSDEQNHL++A V +PN+DAQFDAS
Sbjct: 62 -DYALHWLVLGTHTSDEQNHLVVA----------------------RVHIPNDDAQFDAS 98
Query: 124 NYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTI--------F 174
+ D+DKG +G S+ G + +H + P+ +I KT +
Sbjct: 99 HCDSDKGEFGGF--GSVTGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDY 156
Query: 175 TGHTAV----------VEVR------YGLSWNPSLNGYLLSASDDHTICLWDINATPKEN 218
T H A + +R YGLSWN +L+G+LLSASDDHT+CLWDINA PKE
Sbjct: 157 TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG 216
Query: 219 RVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDAQF-DASNY 274
+++DAK IFTGH+AVVED + H L + G+ D++ + ++ + DA
Sbjct: 217 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTA 276
Query: 275 DTDKGDFGGF-------GSVSG----------KIEIEIKINHEGEVNRARYMPQNPCVIA 317
+ + F + GS K+++ +H+ E+ + + P N ++A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 318 TKTPSSDVLVFDYTK 332
+ + V+D +K
Sbjct: 337 SSGTDRRLNVWDLSK 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
LS+NP L + S D T+ LWD+ N + T F H + + + W+P
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDL-----RNLKLKLHT-FESHKDEI---FQVHWSPHN 331
Query: 194 NGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEDYS 238
L S+ D + +WD++ +E DA+ I GHTA + D+S
Sbjct: 332 ETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 383
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVR 184
+ + W+P L S+ D + +WD++ +E DA+ I GHTA +
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS-- 380
Query: 185 YGLSWNPSLNGYLLSASDDHTICLW 209
SWNP+ + S S+D+ +W
Sbjct: 381 -DFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK---TIFTGHTAVVEVRYGLSWN 190
++W P + + S S+D T+ +W+I P V+ + GHT V + ++W+
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEI---PDGGLVLPLREPVITLEGHTKRVGI---VAWH 140
Query: 191 PSLNGYLLSASDDHTICLWDIN 212
P+ LLSA D+ I +WD+
Sbjct: 141 PTAQNVLLSAGXDNVILVWDVG 162
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK---TIFTGHTAVVEVRYGLSWN 190
++W P + + S S+D T+ +W+I P V+ + GHT V + ++W+
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEI---PDGGLVLPLREPVITLEGHTKRVGI---VAWH 140
Query: 191 PSLNGYLLSASDDHTICLWDIN 212
P+ LLSA D+ I +WD+
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVG 162
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD 203
+++ S D T+ +WD+N N T+ AV+ +R+ NG +++ S D
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLN------TLIHHCEAVLHLRFN-------NGMMVTCSKD 232
Query: 204 HTICLWDINATPKENRVIDAKTIFTGHTAVV 234
+I +WD+ A+P + I + + GH A V
Sbjct: 233 RSIAVWDM-ASPTD---ITLRRVLVGHRAAV 259
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 141 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200
NG +++ S D +I +WD+ A+P + I + + GH A V V + ++ + Y++SA
Sbjct: 223 NGMMVTCSKDRSIAVWDM-ASPTD---ITLRRVLVGHRAAVNV---VDFD---DKYIVSA 272
Query: 201 SDDHTICLWD 210
S D TI +W+
Sbjct: 273 SGDRTIKVWN 282
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTIC 154
D Q AS D DK V+L N + Q + +G++++P + + SASDD T+
Sbjct: 396 DGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVK 451
Query: 155 LWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214
LW+ N + TGH++ V G++++P + SASDD T+ LW+ N
Sbjct: 452 LWNRNGQLLQ--------TLTGHSSSVR---GVAFSPD-GQTIASASDDKTVKLWNRNGQ 499
Query: 215 PKENRVIDAKTIFTGHTAVVE 235
+ TGH++ V
Sbjct: 500 LLQ--------TLTGHSSSVR 512
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTIC 154
D Q AS D DK V+L N + Q + +G++++P + SASDD T+
Sbjct: 150 DGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVK 205
Query: 155 LWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214
LW+ N + TGH++ V G++++P + SASDD T+ LW+ N
Sbjct: 206 LWNRNGQLLQ--------TLTGHSSSVR---GVAFSPD-GQTIASASDDKTVKLWNRNGQ 253
Query: 215 PKENRVIDAKTIFTGHTAVV 234
+ TGH++ V
Sbjct: 254 LLQ--------TLTGHSSSV 265
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD 203
+ SASDD T+ LW+ N + TGH++ V +G++++P + SASDD
Sbjct: 31 IASASDDKTVKLWNRNGQLLQ--------TLTGHSSSV---WGVAFSPD-GQTIASASDD 78
Query: 204 HTICLWDINATPKENRVIDAKTIFTGHTAVVE 235
T+ LW+ N + TGH++ V
Sbjct: 79 KTVKLWNRNGQLLQ--------TLTGHSSSVR 102
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTIC 154
D Q AS D DK V+L N + Q + G++++P + SASDD T+
Sbjct: 68 DGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVK 123
Query: 155 LWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214
LW+ N + TGH++ V +G++++P + SASDD T+ LW+ N
Sbjct: 124 LWNRNGQLLQ--------TLTGHSSSV---WGVAFSPD-GQTIASASDDKTVKLWNRNGQ 171
Query: 215 PKENRVIDAKTIFTGHTAVV 234
+ TGH++ V
Sbjct: 172 LLQ--------TLTGHSSSV 183
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 20/91 (21%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD 203
+ SASDD T+ LW+ N + TGH++ V +G++++P + SASDD
Sbjct: 277 IASASDDKTVKLWNRNGQLLQ--------TLTGHSSSV---WGVAFSPD-GQTIASASDD 324
Query: 204 HTICLWDINATPKENRVIDAKTIFTGHTAVV 234
T+ LW+ N + TGH++ V
Sbjct: 325 KTVKLWNRNGQHLQ--------TLTGHSSSV 347
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTIC 154
D Q AS D DK V+L N + Q + +G++++P + SASDD T+
Sbjct: 314 DGQTIASASD-DK--TVKLWNRNGQHLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVK 369
Query: 155 LWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214
LW+ N + TGH++ V G++++P + SASDD T+ LW+ N
Sbjct: 370 LWNRNGQLLQ--------TLTGHSSSVR---GVAFSPD-GQTIASASDDKTVKLWNRNGQ 417
Query: 215 PKENRVIDAKTIFTGHTAVV 234
+ TGH++ V
Sbjct: 418 LLQ--------TLTGHSSSV 429
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 20/91 (21%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD 203
+ SASDD T+ LW+ N + TGH++ V G++++P + SASDD
Sbjct: 482 IASASDDKTVKLWNRNGQLLQ--------TLTGHSSSVR---GVAFSPD-GQTIASASDD 529
Query: 204 HTICLWDINATPKENRVIDAKTIFTGHTAVV 234
T+ LW+ N + TGH++ V
Sbjct: 530 KTVKLWNRNGQLLQ--------TLTGHSSSV 552
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTIC 154
D Q AS D DK V+L N + Q + G++++P + SASDD T+
Sbjct: 478 DGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVK 533
Query: 155 LWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWD 210
LW+ N + TGH++ V +G++++P + SAS D T+ LW+
Sbjct: 534 LWNRNGQLLQ--------TLTGHSSSV---WGVAFSPD-GQTIASASSDKTVKLWN 577
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 17/197 (8%)
Query: 32 DLVMTHALEWPS---LTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIAS 88
DLV L+ S + W P+ + ++D + N T + TH ++
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 89 VQLPNEDAQFDASNYDTDKGGNV----QLPNEDAQFDASNYDTDKGGYGLS--WNPSLNG 142
PN + + D ++ + D S T GY S + P
Sbjct: 115 AFAPNGQS---VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202
L++ S D T LWD+ T + I +GHTA V LS N +S S
Sbjct: 172 RLITGSGDQTCVLWDV--TTGQRISIFGSEFPSGHTADV---LSLSINSLNANMFISGSC 226
Query: 203 DHTICLWDINATPKENR 219
D T+ LWD+ T + R
Sbjct: 227 DTTVRLWDLRITSRAVR 243
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
++W+P N YL SAS D T C+W N E T GH V+ ++W PS
Sbjct: 67 VAWSPCGN-YLASASFDATTCIWKKNQDDFE-----CVTTLEGHENEVK---SVAWAPSG 117
Query: 194 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
N L + S D ++ +W+++ E + ++ HT V+ H
Sbjct: 118 N-LLATCSRDKSVWVWEVD----EEDEYECVSVLNSHTQDVKHVVWH 159
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLW--DINATPKENRVIDAKTIFTGHTAVVEVRYGLSW 189
Y ++W L G L +A D I ++ D N+ P++ + H+ V ++W
Sbjct: 256 YDIAWC-QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC---VAW 311
Query: 190 NPSLNGYLLSASDDHTICLW 209
NP G L S SDD + W
Sbjct: 312 NPKEPGLLASCSDDGEVAFW 331
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA-VVEVRYGLSWNPSLNGYLLSAS 201
+ LS S D + LWD+ A R F GHT V+ V + L N ++SAS
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRR-------FVGHTKDVLSVAFSLD-----NRQIVSAS 491
Query: 202 DDHTICLWD 210
D TI LW+
Sbjct: 492 RDRTIKLWN 500
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 138 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL---SWNPSLN 194
P Y+LS D I L+D+ + +++ G RY + W P
Sbjct: 53 PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112
Query: 195 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 234
G S+S D T+ +WD N + +T+++ H + V
Sbjct: 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV 152
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 34/112 (30%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL------ 187
+ W P G S+S D T+ +WD N + +T+++ H + V ++ L
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR 164
Query: 188 ----------------------------SWNPSLNGYLLSASDDHTICLWDI 211
SW+P + L +AS D + LWD+
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 76 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 127
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 128 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 158
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 228 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 277
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 278 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 310
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 78 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 129
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 130 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 160
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 230 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 279
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 280 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 57 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGK-------CLKTLKG 108
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 109 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 139
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 209 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 258
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ ++ GHT VV + H
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-------QGHTDVVISTACH 291
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 57 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGK-------CLKTLKG 108
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 109 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 139
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 209 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 258
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ ++ GHT VV + H
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-------QGHTDVVISTACH 291
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 111
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 112 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 142
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 212 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 261
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 262 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 294
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 57 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGK-------CLKTLKG 108
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 109 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 139
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 209 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 258
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ ++ GHT VV + H
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-------QGHTDVVISTACH 291
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 71 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 122
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 123 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 153
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 223 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 272
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 273 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 305
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24
Kda Fragment Of Dna Gyrase B Complexed With Novobiocin
At 2.3 Angstroms Resolution
Length = 219
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 267 AQFDASNYDTDKGDFGGFGSVSGKI--EIEIKINHEGEVNRARY---MPQNPCVIATKTP 321
+FD ++Y G G SV + ++E+ I HEG+++R Y +PQ P + +T
Sbjct: 101 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETE 160
Query: 322 SSDVLV 327
+ +V
Sbjct: 161 KTGTMV 166
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 83
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 84 SWDKTLRLWDVATGETYQR-------FVGHKSDVXSVDIDK 117
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 55 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 106
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 107 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 137
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 207 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 256
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 257 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 289
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 54 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 105
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 106 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 136
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 206 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 255
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 256 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 288
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 59 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 110
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 111 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 141
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 211 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 260
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 261 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 293
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 54 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 105
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 106 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 136
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 206 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 255
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 256 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 288
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 83
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 84 SWDKTLRLWDVATGETYQR-------FVGHKSDVMSVDIDK 117
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
Y LSAS D T+ LWD+ R F GH + V + + S+ ++S S
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQR-------FVGHKSDV-MSVDIDKKASM---IISGS 126
Query: 202 DDHTICLWDI 211
D TI +W I
Sbjct: 127 RDKTIKVWTI 136
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 50 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 101
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 102 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 132
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 202 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 251
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 252 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 284
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 83
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 84 SWDKTLRLWDVATGETYQR-------FVGHKSDVMSVDIDK 117
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
Y LSAS D T+ LWD+ R F GH + V + + S+ ++S S
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQR-------FVGHKSDV-MSVDIDKKASM---IISGS 126
Query: 202 DDHTICLWDI 211
D TI +W I
Sbjct: 127 RDKTIKVWTI 136
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 111
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 112 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 142
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 212 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 261
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 262 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 294
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 111
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 112 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 142
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 212 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 261
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 262 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 294
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 115 NEDAQFDASNYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTI 173
+ED + + + +KG GLS P+++G + L AS I L D P+EN + K +
Sbjct: 190 DEDGRDEIRGFILEKGCKGLS-APAIHGKVGLRASITGEIVL-DEAFVPEENILPHVKGL 247
Query: 174 FTGHTAVVEVRYGLSWN 190
T + RYG++W
Sbjct: 248 RGPFTCLNSARYGIAWG 264
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 83
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 84 SWDKTLRLWDVATGETYQR-------FVGHKSDVMSVDIDK 117
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
Y LSAS D T+ LWD+ R F GH + V + + S+ ++S S
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQR-------FVGHKSDV-MSVDIDKKASM---IISGS 126
Query: 202 DDHTICLWDI 211
D TI +W I
Sbjct: 127 RDKTIKVWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 77
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 78 SWDKTLRLWDVATGETYQR-------FVGHKSDVMSVDIDK 111
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
Y LSAS D T+ LWD+ R F GH + V + + S+ ++S S
Sbjct: 72 AYALSASWDKTLRLWDVATGETYQR-------FVGHKSDV-MSVDIDKKASM---IISGS 120
Query: 202 DDHTICLWDI 211
D TI +W I
Sbjct: 121 RDKTIKVWTI 130
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL---NGYLLSA 200
LLSAS D T+ W + ++ V F GH+ +V+ + +L Y LSA
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQ-------DCTLTADGAYALSA 83
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
S D T+ LWD+ R F GH + V I +
Sbjct: 84 SWDKTLRLWDVATGETYQR-------FVGHKSDVMSVDIDK 117
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
Y LSAS D T+ LWD+ R F GH + V + + S+ ++S S
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQR-------FVGHKSDV-MSVDIDKKASM---IISGS 126
Query: 202 DDHTICLWDI 211
D TI +W I
Sbjct: 127 RDKTIKVWTI 136
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 115 NEDAQFDASNYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTI 173
+ED + + + +KG GLS P+++G + L AS I L D P+EN + K +
Sbjct: 186 DEDGRDEIRGFILEKGCKGLS-APAIHGKVGLRASITGEIVL-DEAFVPEENILPHVKGL 243
Query: 174 FTGHTAVVEVRYGLSWN 190
T + RYG++W
Sbjct: 244 RGPFTCLNSARYGIAWG 260
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 115 NEDAQFDASNYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTI 173
+ED + + + +KG GLS P+++G + L AS I L D P+EN + K +
Sbjct: 187 DEDGRDEIRGFILEKGCKGLS-APAIHGKVGLRASITGEIVL-DEAFVPEENILPHVKGL 244
Query: 174 FTGHTAVVEVRYGLSWN 190
T + RYG++W
Sbjct: 245 RGPFTCLNSARYGIAWG 261
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 57 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 108
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 109 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 139
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 57 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 108
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 109 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 139
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 209 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 258
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 259 SEDNMVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 291
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176
D +F+ + G ++W+ N L+SASDD T+ +WD+++ G
Sbjct: 53 DGKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSG-------KCLKTLKG 104
Query: 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211
H+ V + ++NP N ++S S D ++ +WD+
Sbjct: 105 HSNYV---FCCNFNPQSN-LIVSGSFDESVRIWDV 135
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG--YLLSA 200
Y+L+A+ D+T+ LWD + + + + +TGH +Y + N S+ G +++S
Sbjct: 205 YILAATLDNTLKLWDYS----KGKCLKT---YTGHK---NEKYCIFANFSVTGGKWIVSG 254
Query: 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S+D+ + +W++ + + I K GHT VV + H
Sbjct: 255 SEDNLVYIWNL-----QTKEIVQK--LQGHTDVVISTACH 287
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 137 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPSLNG 195
N S + L + S+D + LWD+N KE R T+F GHT +V R+ +P +
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLN--QKECR----NTMF-GHTNSVNHCRF----SPD-DE 763
Query: 196 YLLSASDDHTICLWDINATPKENRVIDAKTIF 227
L S S D T+ LWD+ + E + I+ K F
Sbjct: 764 LLASCSADGTLRLWDVR-SANERKSINVKRFF 794
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 147 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206
A + + LW+I++ K V D + GH + V +G+ ++P + +L +ASDD TI
Sbjct: 865 ALSQYCVELWNIDSRLK---VADCR----GHLSWV---HGVMFSPDGSSFL-TASDDQTI 913
Query: 207 CLWDINATPKENRVIDAKTI 226
+W+ K + ++ + I
Sbjct: 914 RVWETKKVCKNSAIVLKQEI 933
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 137 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPSLNG 195
N S + L + S+D + LWD+N KE R T+F GHT +V R+ +P +
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLN--QKECR----NTMF-GHTNSVNHCRF----SPD-DE 756
Query: 196 YLLSASDDHTICLWDINATPKENRVIDAKTIF 227
L S S D T+ LWD+ + E + I+ K F
Sbjct: 757 LLASCSADGTLRLWDVR-SANERKSINVKRFF 787
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 147 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206
A + + LW+I++ K V D + GH + V +G+ ++P + +L +ASDD TI
Sbjct: 858 ALSQYCVELWNIDSRLK---VADCR----GHLSWV---HGVMFSPDGSSFL-TASDDQTI 906
Query: 207 CLWDINATPKENRVIDAKTI 226
+W+ K + ++ + I
Sbjct: 907 RVWETKKVCKNSAIVLKQEI 926
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
G L+S S D T+ +WDI +F GH + V + + Y+++ S
Sbjct: 174 GILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNI--KYIVTGS 224
Query: 202 DDHTICLWDINATPKENRVID 222
D+T+ +W + PKE+ V D
Sbjct: 225 RDNTLHVWKL---PKESSVPD 242
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201
G L+S S D T+ +WDI +F GH + V + + Y+++ S
Sbjct: 174 GILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNI--KYIVTGS 224
Query: 202 DDHTICLWDINATPKENRVID 222
D+T+ +W + PKE+ V D
Sbjct: 225 RDNTLHVWKL---PKESSVPD 242
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPS 192
L ++P LLS S DH + LW+I + + ++ GH V+ Y L
Sbjct: 157 LKFHPRDPNLLLSVSKDHALRLWNI----QTDTLVAIFGGVEGHRDEVLSADYDL----- 207
Query: 193 LNGYLLSASDDHTICLWDINATPKENRV 220
L ++S DH++ LW IN+ N +
Sbjct: 208 LGEKIMSCGMDHSLKLWRINSKRMMNAI 235
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
Length = 257
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 44 LTAQWL----PDVTSVQLPN-EDAQFDASNYDTDKGTHT----SDEQNHLLIASVQLPNE 94
+ WL PD+ +Q E+ +F +++ G H S +N + IAS++ P E
Sbjct: 18 IVIPWLKENKPDILCMQETKVENRKFPEADFHR-IGYHVVFSGSKGRNGVAIASLEEP-E 75
Query: 95 DAQF--DASNYDTDKGGNVQLPNEDA----QFDASNYDTDKGGYGLSWNPSLNGYLLSAS 148
D F D+ D D+ ++ D D++K Y L W L YL
Sbjct: 76 DVSFGLDSEPKDEDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTV 135
Query: 149 DDHTICLW--DINATPK 163
D + +W D+N P+
Sbjct: 136 DFRSFAVWCGDMNVAPE 152
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPS 192
L ++P LLS S DH + LW+I + + ++ GH V+ Y L
Sbjct: 121 LKFHPRDPNLLLSVSKDHALRLWNI----QTDTLVAIFGGVEGHRDEVLSADYDL----- 171
Query: 193 LNGYLLSASDDHTICLWDINATPKENRV 220
L ++S DH++ LW IN+ N +
Sbjct: 172 LGEKIMSCGMDHSLKLWRINSKRMMNAI 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPS 192
L ++P LLS S DH + LW+I + + ++ GH V+ Y L
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNI----QTDTLVAIFGGVEGHRDEVLSADYDL----- 170
Query: 193 LNGYLLSASDDHTICLWDINATPKENRV 220
L ++S DH++ LW IN+ N +
Sbjct: 171 LGEKIMSCGMDHSLKLWRINSKRMMNAI 198
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPS 192
L ++P LLS S DH + LW+I + + ++ GH V+ Y L
Sbjct: 116 LKFHPRDPNLLLSVSKDHALRLWNI----QTDTLVAIFGGVEGHRDEVLSADYDL----- 166
Query: 193 LNGYLLSASDDHTICLWDINATPKENRV 220
L ++S DH++ LW IN+ N +
Sbjct: 167 LGEKIMSCGMDHSLKLWRINSKRMMNAI 194
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVEVRYGLSWNPS 192
L ++P LLS S DH + LW+I + + ++ GH V+ Y L
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNI----QTDTLVAIFGGVEGHRDEVLSADYDL----- 170
Query: 193 LNGYLLSASDDHTICLWDINATPKENRV 220
L ++S DH++ LW IN+ N +
Sbjct: 171 LGEKIMSCGMDHSLKLWRINSKRMMNAI 198
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202
+LLS S D TI +WD++ GH V G+ ++ S ++LS +D
Sbjct: 310 FLLSGSRDKTIKMWDVSTGM-------CLMTLVGHDNWVR---GVLFH-SGGKFILSCAD 358
Query: 203 DHTICLWD 210
D T+ +WD
Sbjct: 359 DKTLRVWD 366
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 144 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD 203
++SAS+D TI +WD D + GHT V+ +S++ S L S S D
Sbjct: 123 MVSASEDATIKVWDYETG-------DFERTLKGHTDSVQ---DISFDHS-GKLLASCSAD 171
Query: 204 HTICLWDINA 213
TI LWD
Sbjct: 172 MTIKLWDFQG 181
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL-SAS 201
+++SAS D TI +W++ KT FTGH V + P+ +G L+ S S
Sbjct: 206 HIVSASRDKTIKMWEVQTG------YCVKT-FTGHREWVRMV-----RPNQDGTLIASCS 253
Query: 202 DDHTICLWDI 211
+D T+ +W +
Sbjct: 254 NDQTVRVWVV 263
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 134 LSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
++W+P+ L YL S S D T +W ++N K +V + SW+
Sbjct: 210 VAWSPTVLLRSYLASVSQDRTCIIW-----TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Query: 192 SLNGYLLSASDDHTICLWDINATPK 216
S N LS D+ + LW N K
Sbjct: 265 SGNVLALSGGDNK-VTLWKENLEGK 288
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 138 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL 197
P +LSAS D TI +W + T E + GH+ V S +
Sbjct: 48 PQFPDMILSASRDKTIIMWKL--TRDETNYGIPQRALRGHSHFVSDVV----ISSDGQFA 101
Query: 198 LSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231
LS S D T+ LWD+ R F GHT
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRR-------FVGHT 128
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 138 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL 197
P +LSAS D TI +W + T E + GH+ V S +
Sbjct: 25 PQFPDMILSASRDKTIIMWKL--TRDETNYGIPQRALRGHSHFVSDVV----ISSDGQFA 78
Query: 198 LSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231
LS S D T+ LWD+ R F GHT
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRR-------FVGHT 105
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 134 LSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
++W+P+ L YL S S D T +W ++N K +V + SW+
Sbjct: 212 VAWSPTVLLRSYLASVSQDRTCIIW-----TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266
Query: 192 SLNGYLLSASDDHTICLWDINATPK 216
S N LS D+ + LW N K
Sbjct: 267 SGNVLALSGGDNK-VTLWKENLEGK 290
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 141 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200
N LLSASDD T+ +W +N F GH+ + SW + ++S
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQN-------CFYGHSQSI---VSASWVG--DDKVISC 306
Query: 201 SDDHTICLWDINA-TPKENRVIDAKTIFTGHTA 232
S D ++ LW + T ++D IF G +
Sbjct: 307 SMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339
>pdb|2WBN|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1
pdb|2WC9|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1 With Bound Mn
Length = 212
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 74 GTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGN--VQLPNEDAQ-FDASNY----D 126
G DE + ++I ++ PN +F+ +Y TDK G+ +L ++D DA+ Y D
Sbjct: 143 GERWLDELDAIVIDPLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFERD 202
Query: 127 TDKGGYGL 134
KGG L
Sbjct: 203 XKKGGVSL 210
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 141 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200
N + A + + LW+ T ++V D + GH + V +G+ ++P + +L ++
Sbjct: 858 NHLAVVALSQYCVELWN---TDSRSKVADCR----GHLSWV---HGVMFSPDGSSFL-TS 906
Query: 201 SDDHTICLWDINATPKENRVI 221
SDD TI LW+ K + V+
Sbjct: 907 SDDQTIRLWETKKVCKNSAVM 927
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,917,983
Number of Sequences: 62578
Number of extensions: 585105
Number of successful extensions: 1373
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 183
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)