Query psy4579
Match_columns 368
No_of_seqs 332 out of 2621
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 20:35:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 6.2E-40 2.1E-44 301.6 24.0 348 6-365 11-390 (430)
2 4gqb_B Methylosome protein 50; 100.0 7.9E-37 2.7E-41 272.1 19.4 280 16-365 12-311 (344)
3 1vyh_C Platelet-activating fac 100.0 2.7E-35 9.4E-40 268.9 23.2 282 39-365 107-392 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 2.6E-35 8.9E-40 258.3 20.1 265 39-365 12-282 (304)
5 4g56_B MGC81050 protein; prote 100.0 2.4E-35 8.1E-40 264.3 19.7 264 39-364 41-322 (357)
6 3ow8_A WD repeat-containing pr 100.0 2.4E-34 8.4E-39 253.9 20.5 266 37-365 29-302 (321)
7 1nr0_A Actin interacting prote 100.0 1.1E-33 3.7E-38 271.3 19.1 314 18-364 39-378 (611)
8 1got_B GT-beta; complex (GTP-b 100.0 2.8E-33 9.5E-38 249.3 20.2 262 39-365 54-324 (340)
9 4gqb_B Methylosome protein 50; 100.0 2.3E-33 7.8E-38 249.8 18.1 240 39-332 81-331 (344)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-33 2.3E-37 247.3 21.1 291 42-365 18-315 (345)
11 2pbi_B Guanine nucleotide-bind 100.0 1.6E-32 5.5E-37 245.6 21.2 265 39-365 63-338 (354)
12 3iz6_a 40S ribosomal protein R 100.0 1.6E-32 5.5E-37 248.1 17.7 267 39-365 65-356 (380)
13 1nr0_A Actin interacting prote 100.0 5.9E-32 2E-36 259.2 22.1 322 16-365 79-548 (611)
14 3ow8_A WD repeat-containing pr 100.0 1.6E-32 5.4E-37 242.4 16.3 261 16-331 56-320 (321)
15 2ymu_A WD-40 repeat protein; u 100.0 1.2E-31 4.2E-36 255.2 22.7 302 17-365 242-561 (577)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-32 1.1E-36 243.0 17.1 283 16-332 36-335 (345)
17 2hes_X YDR267CP; beta-propelle 100.0 1.1E-31 3.9E-36 237.8 20.2 277 39-364 13-306 (330)
18 1vyh_C Platelet-activating fac 100.0 9.3E-32 3.2E-36 245.5 19.8 259 17-331 129-410 (410)
19 1erj_A Transcriptional repress 100.0 3.3E-31 1.1E-35 240.6 22.3 279 39-364 63-363 (393)
20 1got_B GT-beta; complex (GTP-b 100.0 8.6E-32 2.9E-36 239.6 17.3 258 16-329 75-340 (340)
21 4ery_A WD repeat-containing pr 100.0 1.4E-30 4.6E-35 228.9 21.4 265 38-366 21-292 (312)
22 2ymu_A WD-40 repeat protein; u 100.0 2.1E-30 7E-35 246.7 24.3 302 17-365 201-520 (577)
23 2pm7_B Protein transport prote 100.0 7.8E-31 2.7E-35 229.0 19.5 253 38-332 7-285 (297)
24 4g56_B MGC81050 protein; prote 100.0 1.8E-30 6E-35 232.7 20.6 244 39-332 93-343 (357)
25 2pm9_A Protein WEB1, protein t 100.0 2E-30 6.9E-35 236.6 20.5 272 42-365 14-317 (416)
26 3iz6_a 40S ribosomal protein R 100.0 1.8E-30 6.2E-35 234.6 19.0 266 16-332 86-375 (380)
27 2pm9_A Protein WEB1, protein t 100.0 1.7E-30 5.7E-35 237.2 18.6 270 17-334 44-339 (416)
28 4e54_B DNA damage-binding prot 100.0 1.2E-30 4.1E-35 240.1 17.1 272 40-332 119-430 (435)
29 1r5m_A SIR4-interacting protei 100.0 4.8E-30 1.6E-34 234.3 19.9 304 32-365 37-406 (425)
30 2ynn_A Coatomer subunit beta'; 100.0 7.3E-30 2.5E-34 223.6 19.9 220 85-365 15-240 (304)
31 3frx_A Guanine nucleotide-bind 100.0 6.2E-30 2.1E-34 225.6 19.4 266 39-332 16-317 (319)
32 2hes_X YDR267CP; beta-propelle 100.0 2.7E-30 9.1E-35 229.0 17.2 274 17-332 33-328 (330)
33 3vl1_A 26S proteasome regulato 100.0 3.9E-29 1.3E-33 228.5 25.4 279 43-363 59-345 (420)
34 2pbi_B Guanine nucleotide-bind 100.0 4E-30 1.4E-34 230.1 18.2 258 17-329 85-354 (354)
35 2j04_B YDR362CP, TAU91; beta p 100.0 3E-31 1E-35 248.0 11.1 273 39-365 132-495 (524)
36 3bg1_A Protein SEC13 homolog; 100.0 9.7E-31 3.3E-35 230.4 12.4 253 38-331 11-292 (316)
37 3frx_A Guanine nucleotide-bind 100.0 2.5E-29 8.7E-34 221.6 21.2 217 85-365 19-249 (319)
38 2xzm_R RACK1; ribosome, transl 100.0 3.1E-29 1.1E-33 223.4 20.5 275 39-365 20-321 (343)
39 1gxr_A ESG1, transducin-like e 100.0 1.4E-28 4.7E-33 217.7 23.2 289 37-365 6-318 (337)
40 2pm7_B Protein transport prote 100.0 1.7E-28 5.8E-33 214.1 23.3 228 85-366 11-267 (297)
41 4h5i_A Guanine nucleotide-exch 100.0 2.4E-29 8.4E-34 225.9 18.1 273 36-365 10-324 (365)
42 3ei3_B DNA damage-binding prot 100.0 4.3E-29 1.5E-33 225.6 19.9 288 21-332 56-382 (383)
43 1erj_A Transcriptional repress 100.0 1.7E-29 5.7E-34 229.4 17.1 250 42-332 125-389 (393)
44 3i2n_A WD repeat-containing pr 100.0 7.9E-29 2.7E-33 221.2 20.9 292 27-365 6-333 (357)
45 4gga_A P55CDC, cell division c 100.0 5.7E-29 2E-33 227.8 20.4 264 16-332 123-395 (420)
46 3dwl_C Actin-related protein 2 100.0 4.7E-28 1.6E-32 218.3 23.4 246 39-331 10-280 (377)
47 4a11_B DNA excision repair pro 100.0 5.3E-28 1.8E-32 219.6 22.2 300 15-334 20-367 (408)
48 3k26_A Polycomb protein EED; W 100.0 4E-29 1.4E-33 223.8 14.4 299 28-365 4-347 (366)
49 2xzm_R RACK1; ribosome, transl 100.0 9.3E-28 3.2E-32 213.8 22.1 220 85-365 23-267 (343)
50 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-29 8.8E-34 234.9 12.5 293 16-332 181-517 (524)
51 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-28 1.6E-32 220.4 20.3 278 30-366 24-326 (402)
52 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-27 4.1E-32 219.6 22.4 253 37-365 12-279 (588)
53 1sq9_A Antiviral protein SKI8; 100.0 1.9E-28 6.4E-33 222.2 15.4 270 38-365 14-366 (397)
54 3bg1_A Protein SEC13 homolog; 100.0 7.5E-28 2.6E-32 211.9 18.7 230 84-365 14-274 (316)
55 3dw8_B Serine/threonine-protei 100.0 3.7E-28 1.3E-32 223.8 16.7 245 40-333 28-374 (447)
56 4aez_A CDC20, WD repeat-contai 100.0 1.5E-27 5E-32 217.1 20.3 260 16-332 111-380 (401)
57 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-27 5.3E-32 214.1 20.0 249 39-332 7-274 (372)
58 3jrp_A Fusion protein of prote 100.0 8.8E-28 3E-32 216.0 17.3 251 38-332 9-287 (379)
59 3v7d_B Cell division control p 100.0 1.3E-27 4.3E-32 221.6 18.8 279 17-366 141-446 (464)
60 3vl1_A 26S proteasome regulato 100.0 4.3E-28 1.5E-32 221.6 15.4 292 17-366 77-398 (420)
61 1gxr_A ESG1, transducin-like e 100.0 4.1E-27 1.4E-31 208.2 21.1 264 37-331 48-336 (337)
62 3dm0_A Maltose-binding peripla 100.0 1.9E-27 6.3E-32 231.4 20.6 270 38-331 380-692 (694)
63 4aow_A Guanine nucleotide-bind 100.0 1.8E-27 6.1E-32 211.0 18.7 272 16-332 59-337 (340)
64 3dwl_C Actin-related protein 2 100.0 9.9E-28 3.4E-32 216.1 17.1 293 17-330 32-377 (377)
65 4ery_A WD repeat-containing pr 100.0 1.1E-27 3.8E-32 210.3 16.9 258 17-331 44-311 (312)
66 3gre_A Serine/threonine-protei 100.0 1.4E-27 4.8E-32 219.5 18.1 261 39-333 62-360 (437)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-27 6.1E-32 245.8 20.7 314 17-365 636-1056(1249)
68 4aez_A CDC20, WD repeat-contai 100.0 2.1E-27 7E-32 216.1 18.6 263 40-365 93-361 (401)
69 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-27 6.2E-32 211.0 17.7 280 39-332 10-337 (351)
70 4ggc_A P55CDC, cell division c 100.0 2.4E-27 8.2E-32 208.2 17.9 264 16-332 43-315 (318)
71 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-27 3.8E-32 236.9 17.5 264 39-365 12-282 (814)
72 3zwl_B Eukaryotic translation 100.0 1.1E-26 3.7E-31 208.0 22.4 278 30-365 22-327 (369)
73 1k8k_C P40, ARP2/3 complex 41 99.9 3E-27 1E-31 212.2 17.5 293 17-332 29-361 (372)
74 1yfq_A Cell cycle arrest prote 99.9 1.6E-27 5.3E-32 211.7 15.0 265 38-360 9-301 (342)
75 1pgu_A Actin interacting prote 99.9 3.2E-27 1.1E-31 226.1 17.9 312 17-363 87-541 (615)
76 1p22_A F-BOX/WD-repeat protein 99.9 6.5E-27 2.2E-31 215.1 19.1 282 21-365 114-397 (435)
77 2xyi_A Probable histone-bindin 99.9 8E-27 2.7E-31 214.2 19.0 266 36-332 124-410 (430)
78 3zwl_B Eukaryotic translation 99.9 4.3E-27 1.5E-31 210.6 15.7 277 17-332 53-346 (369)
79 2oaj_A Protein SNI1; WD40 repe 99.9 2.7E-27 9.1E-32 235.5 15.5 201 37-256 14-238 (902)
80 4gga_A P55CDC, cell division c 99.9 4.6E-26 1.6E-30 208.5 22.2 262 42-365 107-376 (420)
81 4e54_B DNA damage-binding prot 99.9 2.7E-26 9.4E-31 211.0 19.9 196 85-332 121-327 (435)
82 1pgu_A Actin interacting prote 99.9 2E-26 7E-31 220.5 19.4 286 18-364 39-349 (615)
83 3odt_A Protein DOA1; ubiquitin 99.9 3.1E-26 1E-30 200.6 17.9 255 39-365 17-278 (313)
84 1r5m_A SIR4-interacting protei 99.9 1.2E-26 4.2E-31 211.7 15.9 260 40-331 108-424 (425)
85 4aow_A Guanine nucleotide-bind 99.9 4.2E-26 1.4E-30 202.2 18.9 273 39-365 37-318 (340)
86 3i2n_A WD repeat-containing pr 99.9 1.5E-26 5.1E-31 206.4 16.1 285 17-332 43-353 (357)
87 2oaj_A Protein SNI1; WD40 repe 99.9 7.9E-27 2.7E-31 232.1 15.3 178 16-215 37-244 (902)
88 3k26_A Polycomb protein EED; W 99.9 2.2E-27 7.6E-32 212.4 10.3 273 17-331 43-365 (366)
89 4h5i_A Guanine nucleotide-exch 99.9 2.7E-26 9.1E-31 206.1 17.1 245 42-332 75-343 (365)
90 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.6E-25 5.4E-30 206.4 22.3 296 21-366 101-420 (445)
91 3odt_A Protein DOA1; ubiquitin 99.9 4.3E-26 1.5E-30 199.6 17.3 254 17-332 38-296 (313)
92 3dm0_A Maltose-binding peripla 99.9 7.1E-26 2.4E-30 220.3 20.5 222 84-365 383-614 (694)
93 1sq9_A Antiviral protein SKI8; 99.9 1.9E-26 6.6E-31 209.0 15.1 262 17-332 35-395 (397)
94 4ggc_A P55CDC, cell division c 99.9 2.5E-25 8.5E-30 195.3 21.2 261 43-365 28-296 (318)
95 3mmy_A MRNA export factor; mRN 99.9 3.8E-26 1.3E-30 204.4 15.8 266 37-365 36-327 (368)
96 3jro_A Fusion protein of prote 99.9 3.1E-26 1.1E-30 224.5 15.4 255 38-332 7-285 (753)
97 3gre_A Serine/threonine-protei 99.9 4.1E-27 1.4E-31 216.4 8.2 296 17-329 85-437 (437)
98 3sfz_A APAF-1, apoptotic pepti 99.9 8.7E-26 3E-30 233.2 18.9 266 38-365 613-894 (1249)
99 2aq5_A Coronin-1A; WD40 repeat 99.9 7.2E-25 2.5E-29 199.3 22.3 211 106-365 54-279 (402)
100 2w18_A PALB2, fancn, partner a 99.9 2E-25 6.7E-30 192.9 17.4 251 20-330 65-355 (356)
101 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.7E-25 5.9E-30 206.5 17.2 229 85-365 104-366 (450)
102 2j04_A TAU60, YPL007P, hypothe 99.9 7.1E-25 2.4E-29 201.3 20.1 267 39-365 51-342 (588)
103 3jrp_A Fusion protein of prote 99.9 7.5E-25 2.6E-29 196.9 19.6 232 84-366 12-269 (379)
104 3v7d_B Cell division control p 99.9 3.3E-24 1.1E-28 198.6 23.5 279 20-365 102-403 (464)
105 3f3f_A Nucleoporin SEH1; struc 99.9 9.9E-25 3.4E-29 193.3 18.4 236 123-365 6-318 (351)
106 4gq1_A NUP37; propeller, trans 99.9 6.7E-26 2.3E-30 205.6 10.9 229 106-366 108-372 (393)
107 1p22_A F-BOX/WD-repeat protein 99.9 2.8E-25 9.6E-30 204.2 14.3 258 17-332 152-414 (435)
108 3ei3_B DNA damage-binding prot 99.9 4.3E-24 1.5E-28 192.8 18.4 241 84-365 74-364 (383)
109 3vu4_A KMHSV2; beta-propeller 99.9 5.1E-24 1.8E-28 190.5 18.2 269 37-332 16-336 (355)
110 3lrv_A PRE-mRNA-splicing facto 99.9 9.4E-25 3.2E-29 194.3 12.6 233 42-332 38-292 (343)
111 3jro_A Fusion protein of prote 99.9 9.6E-24 3.3E-28 206.8 20.3 229 84-365 10-266 (753)
112 2ovr_B FBW7, F-BOX/WD repeat p 99.9 8.5E-24 2.9E-28 194.9 17.9 280 17-332 138-442 (445)
113 4a11_B DNA excision repair pro 99.9 2.6E-23 8.9E-28 188.7 20.7 246 84-365 44-346 (408)
114 3mkq_A Coatomer beta'-subunit; 99.9 1.4E-23 4.9E-28 207.5 20.2 220 85-365 15-240 (814)
115 1yfq_A Cell cycle arrest prote 99.9 5.1E-24 1.8E-28 188.9 14.0 230 84-365 12-263 (342)
116 3dw8_B Serine/threonine-protei 99.9 2.5E-23 8.6E-28 191.4 16.7 238 79-365 24-354 (447)
117 1l0q_A Surface layer protein; 99.9 1.7E-22 5.8E-27 182.7 17.2 262 17-332 11-275 (391)
118 4gq1_A NUP37; propeller, trans 99.9 1.2E-23 4.2E-28 190.7 9.3 262 47-330 96-387 (393)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-21 4.4E-26 180.6 19.2 162 126-332 100-271 (450)
120 3vu4_A KMHSV2; beta-propeller 99.9 3.1E-21 1.1E-25 172.4 19.3 205 123-365 14-252 (355)
121 3lrv_A PRE-mRNA-splicing facto 99.9 3.4E-22 1.2E-26 177.8 12.1 254 17-331 57-332 (343)
122 3mmy_A MRNA export factor; mRN 99.9 3.1E-21 1E-25 172.4 17.4 223 84-365 40-285 (368)
123 3bws_A Protein LP49; two-domai 99.9 1.3E-20 4.5E-25 172.7 18.5 263 40-331 122-431 (433)
124 1l0q_A Surface layer protein; 99.8 3.7E-20 1.2E-24 167.4 16.9 249 53-365 3-255 (391)
125 3bws_A Protein LP49; two-domai 99.8 2E-20 7E-25 171.4 15.4 209 106-365 141-356 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.7E-19 5.9E-24 164.5 20.4 221 109-365 159-409 (415)
127 2w18_A PALB2, fancn, partner a 99.8 2.6E-19 9E-24 154.8 17.7 172 149-365 155-338 (356)
128 2oit_A Nucleoporin 214KDA; NH2 99.8 5.5E-18 1.9E-22 155.2 15.1 159 42-212 38-222 (434)
129 2oit_A Nucleoporin 214KDA; NH2 99.8 5E-18 1.7E-22 155.4 14.6 203 109-365 23-252 (434)
130 2ecf_A Dipeptidyl peptidase IV 99.7 4.7E-18 1.6E-22 166.4 12.4 265 40-365 36-391 (741)
131 1ri6_A Putative isomerase YBHE 99.7 2.1E-17 7.1E-22 146.1 14.9 299 17-365 14-334 (343)
132 1xfd_A DIP, dipeptidyl aminope 99.7 2E-17 7E-22 161.4 14.4 252 36-329 12-341 (723)
133 2ecf_A Dipeptidyl peptidase IV 99.7 4E-17 1.4E-21 159.8 15.9 257 42-365 110-436 (741)
134 2ojh_A Uncharacterized protein 99.7 5.7E-17 2E-21 139.9 13.9 222 85-366 43-284 (297)
135 2ojh_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 135.1 16.2 203 106-365 19-228 (297)
136 1nir_A Nitrite reductase; hemo 99.7 2.9E-16 9.8E-21 147.7 16.2 290 18-365 159-490 (543)
137 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.2E-16 1.8E-20 141.4 15.3 200 106-365 86-322 (415)
138 3vgz_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 135.5 16.2 263 40-365 40-325 (353)
139 3u4y_A Uncharacterized protein 99.7 4.4E-16 1.5E-20 137.2 13.2 273 17-332 19-304 (331)
140 1xfd_A DIP, dipeptidyl aminope 99.7 3.1E-16 1.1E-20 153.0 13.0 296 18-365 37-421 (723)
141 1nir_A Nitrite reductase; hemo 99.7 2.3E-15 7.9E-20 141.6 17.4 267 46-365 143-432 (543)
142 2z3z_A Dipeptidyl aminopeptida 99.6 1.3E-15 4.5E-20 148.2 14.8 259 41-365 82-412 (706)
143 3o4h_A Acylamino-acid-releasin 99.6 5.5E-16 1.9E-20 147.6 11.0 235 39-330 20-274 (582)
144 2z3z_A Dipeptidyl aminopeptida 99.6 1.1E-15 3.7E-20 148.8 11.1 261 44-365 29-367 (706)
145 1k32_A Tricorn protease; prote 99.6 1.8E-14 6.1E-19 146.2 20.0 172 42-241 297-481 (1045)
146 1k32_A Tricorn protease; prote 99.6 3.7E-15 1.3E-19 151.2 14.2 255 39-365 202-483 (1045)
147 1ri6_A Putative isomerase YBHE 99.6 1.1E-14 3.8E-19 128.5 11.3 228 88-365 42-288 (343)
148 1z68_A Fibroblast activation p 99.6 2.1E-15 7.1E-20 147.2 6.7 193 43-241 18-262 (719)
149 3u4y_A Uncharacterized protein 99.6 6.6E-14 2.3E-18 123.2 15.4 237 47-332 4-252 (331)
150 3scy_A Hypothetical bacterial 99.5 1.1E-13 3.9E-18 123.4 15.0 268 43-362 52-360 (361)
151 3vgz_A Uncharacterized protein 99.5 9.2E-13 3.2E-17 116.7 19.6 181 108-332 68-262 (353)
152 1pby_B Quinohemoprotein amine 99.5 1.1E-13 3.7E-18 121.8 13.0 193 107-332 54-310 (337)
153 1jmx_B Amine dehydrogenase; ox 99.5 1.4E-13 4.8E-18 121.7 12.9 254 46-332 5-325 (349)
154 1z68_A Fibroblast activation p 99.5 2.2E-14 7.4E-19 140.0 7.9 291 17-364 35-420 (719)
155 3hfq_A Uncharacterized protein 99.5 2.6E-13 8.7E-18 120.4 12.2 242 43-331 42-316 (347)
156 3hfq_A Uncharacterized protein 99.5 4.2E-13 1.4E-17 119.0 13.3 236 107-365 14-297 (347)
157 4a5s_A Dipeptidyl peptidase 4 99.4 5.2E-13 1.8E-17 130.6 11.9 155 42-203 18-191 (740)
158 1pby_B Quinohemoprotein amine 99.4 6.1E-12 2.1E-16 110.5 17.3 221 107-365 9-291 (337)
159 3fvz_A Peptidyl-glycine alpha- 99.4 2.4E-11 8.3E-16 106.9 19.3 247 42-332 25-322 (329)
160 3o4h_A Acylamino-acid-releasin 99.4 2.1E-12 7.1E-17 122.8 11.4 219 85-365 23-257 (582)
161 3pe7_A Oligogalacturonate lyas 99.4 2.4E-12 8.3E-17 115.7 11.1 263 46-365 41-362 (388)
162 3azo_A Aminopeptidase; POP fam 99.3 1E-11 3.6E-16 119.8 13.6 269 41-363 24-346 (662)
163 3pe7_A Oligogalacturonate lyas 99.3 7.5E-12 2.6E-16 112.5 11.5 159 42-215 82-275 (388)
164 3azo_A Aminopeptidase; POP fam 99.3 1.7E-11 6E-16 118.2 14.1 160 45-214 81-275 (662)
165 1jmx_B Amine dehydrogenase; ox 99.3 3E-11 1E-15 106.7 14.5 118 107-241 19-157 (349)
166 1q7f_A NHL, brain tumor CG1071 99.3 4.4E-10 1.5E-14 96.5 20.9 237 43-332 32-280 (286)
167 3scy_A Hypothetical bacterial 99.3 7E-11 2.4E-15 105.2 15.9 216 107-365 73-317 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.3 1E-11 3.5E-16 110.9 10.0 156 42-213 41-224 (365)
169 3c5m_A Oligogalacturonate lyas 99.2 4.4E-11 1.5E-15 107.6 8.1 155 43-214 38-226 (396)
170 4a5s_A Dipeptidyl peptidase 4 99.1 3.7E-10 1.3E-14 110.4 13.3 235 108-365 35-330 (740)
171 2bkl_A Prolyl endopeptidase; m 99.1 4.7E-10 1.6E-14 108.9 13.2 246 40-332 120-397 (695)
172 1jof_A Carboxy-CIS,CIS-muconat 99.1 9.1E-10 3.1E-14 98.3 13.7 115 110-241 61-202 (365)
173 2dg1_A DRP35, lactonase; beta 99.1 8.7E-09 3E-13 90.4 19.8 241 42-331 7-262 (333)
174 2gop_A Trilobed protease; beta 99.1 5.1E-10 1.7E-14 98.9 11.9 215 86-363 61-311 (347)
175 2xdw_A Prolyl endopeptidase; a 99.1 1.7E-09 5.8E-14 105.2 16.5 248 41-332 125-414 (710)
176 1rwi_B Serine/threonine-protei 99.1 8.3E-09 2.8E-13 87.6 17.7 236 43-332 26-264 (270)
177 1q7f_A NHL, brain tumor CG1071 99.0 3.5E-08 1.2E-12 84.6 20.6 198 107-364 49-261 (286)
178 2oiz_A Aromatic amine dehydrog 99.0 8.3E-09 2.9E-13 91.8 16.6 94 108-215 30-142 (361)
179 2xdw_A Prolyl endopeptidase; a 99.0 7.8E-09 2.7E-13 100.6 17.4 230 84-364 125-390 (710)
180 1xip_A Nucleoporin NUP159; bet 99.0 2.8E-09 9.5E-14 94.8 12.7 175 130-366 39-226 (388)
181 1yr2_A Prolyl oligopeptidase; 99.0 3.4E-09 1.2E-13 103.6 14.5 248 41-332 163-441 (741)
182 3fvz_A Peptidyl-glycine alpha- 99.0 6.2E-08 2.1E-12 85.0 20.4 184 129-363 24-250 (329)
183 2bkl_A Prolyl endopeptidase; m 99.0 2.6E-08 8.9E-13 96.7 18.0 229 84-364 121-373 (695)
184 2gop_A Trilobed protease; beta 99.0 4.2E-09 1.4E-13 93.0 11.4 227 42-331 60-330 (347)
185 2z2n_A Virginiamycin B lyase; 98.9 4.3E-07 1.5E-11 77.9 22.3 236 42-331 16-254 (299)
186 2dg1_A DRP35, lactonase; beta 98.9 1.4E-07 4.8E-12 82.6 18.5 182 108-332 26-213 (333)
187 3e5z_A Putative gluconolactona 98.8 4.4E-08 1.5E-12 84.5 13.7 148 44-212 31-201 (296)
188 3c5m_A Oligogalacturonate lyas 98.8 1.6E-07 5.5E-12 84.1 16.9 201 128-365 35-249 (396)
189 3e5z_A Putative gluconolactona 98.8 1.3E-07 4.4E-12 81.5 15.2 192 107-364 48-267 (296)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 2.4E-07 8.3E-12 80.2 16.4 239 44-332 21-299 (314)
191 1rwi_B Serine/threonine-protei 98.8 1.3E-06 4.4E-11 73.9 20.0 177 107-332 44-222 (270)
192 1qks_A Cytochrome CD1 nitrite 98.8 2E-07 6.7E-12 87.7 16.0 181 107-332 175-373 (567)
193 1yr2_A Prolyl oligopeptidase; 98.7 1.8E-07 6.2E-12 91.4 14.2 230 84-364 163-417 (741)
194 2qc5_A Streptogramin B lactona 98.7 4.8E-06 1.6E-10 71.3 21.3 236 42-331 21-259 (300)
195 3dsm_A Uncharacterized protein 98.6 1.2E-06 3.9E-11 76.8 16.2 185 108-332 63-253 (328)
196 1xip_A Nucleoporin NUP159; bet 98.6 1.7E-06 5.7E-11 77.0 15.0 102 126-256 86-187 (388)
197 3dsm_A Uncharacterized protein 98.6 4.4E-07 1.5E-11 79.5 11.2 176 107-331 103-301 (328)
198 2z2n_A Virginiamycin B lyase; 98.5 2.8E-05 9.6E-10 66.4 21.5 174 108-330 35-211 (299)
199 3iuj_A Prolyl endopeptidase; h 98.5 1.7E-06 5.7E-11 83.9 14.8 243 42-332 130-405 (693)
200 3no2_A Uncharacterized protein 98.5 8.9E-06 3E-10 69.3 17.5 174 106-332 12-195 (276)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 1.1E-05 3.7E-10 69.7 18.4 197 108-365 45-279 (314)
202 3g4e_A Regucalcin; six bladed 98.4 7.8E-06 2.7E-10 70.4 15.9 227 45-322 17-263 (297)
203 3no2_A Uncharacterized protein 98.4 8.7E-06 3E-10 69.3 15.1 174 18-214 15-196 (276)
204 3g4e_A Regucalcin; six bladed 98.4 2.9E-05 9.8E-10 66.8 18.6 202 108-365 34-253 (297)
205 3hrp_A Uncharacterized protein 98.4 6.3E-05 2.2E-09 67.9 20.5 95 107-214 150-250 (409)
206 3iuj_A Prolyl endopeptidase; h 98.3 1.1E-05 3.6E-10 78.3 15.9 187 127-364 127-336 (693)
207 3hrp_A Uncharacterized protein 98.3 1.9E-05 6.6E-10 71.2 16.7 152 44-213 134-298 (409)
208 2oiz_A Aromatic amine dehydrog 98.3 6.6E-06 2.2E-10 73.0 12.5 218 43-313 110-360 (361)
209 2mad_H Methylamine dehydrogena 98.3 7.7E-05 2.6E-09 66.4 18.8 259 45-333 70-351 (373)
210 2qc5_A Streptogramin B lactona 98.3 0.0003 1E-08 59.9 21.6 177 108-331 40-217 (300)
211 2ghs_A AGR_C_1268P; regucalcin 98.2 5.4E-05 1.9E-09 66.0 16.4 226 45-323 53-294 (326)
212 3sjl_D Methylamine dehydrogena 98.2 4.5E-05 1.6E-09 67.5 15.6 95 108-215 58-171 (386)
213 1qks_A Cytochrome CD1 nitrite 98.2 6.8E-05 2.3E-09 70.4 16.9 233 50-332 165-421 (567)
214 2ghs_A AGR_C_1268P; regucalcin 98.1 0.00022 7.7E-09 62.1 17.7 197 108-364 70-282 (326)
215 2mad_H Methylamine dehydrogena 97.9 0.00086 3E-08 59.5 18.3 92 110-215 48-158 (373)
216 3dr2_A Exported gluconolactona 97.9 0.00017 5.8E-09 62.1 13.1 149 44-214 48-225 (305)
217 1mda_H Methylamine dehydrogena 97.9 2.9E-05 9.9E-10 68.7 7.4 89 110-213 47-158 (368)
218 3c75_H MADH, methylamine dehyd 97.8 0.00035 1.2E-08 63.0 14.2 94 109-215 99-211 (426)
219 2hz6_A Endoplasmic reticulum t 97.8 8.1E-06 2.8E-10 72.7 3.2 96 107-215 17-113 (369)
220 2iwa_A Glutamine cyclotransfer 97.7 0.0014 4.8E-08 54.9 15.5 151 133-332 70-237 (266)
221 3dr2_A Exported gluconolactona 97.7 0.0021 7.2E-08 55.2 16.1 73 127-212 43-115 (305)
222 3nok_A Glutaminyl cyclase; bet 97.6 0.0074 2.5E-07 50.1 17.3 164 107-319 73-253 (268)
223 2qe8_A Uncharacterized protein 97.5 0.0027 9.4E-08 55.5 15.2 77 127-214 65-155 (343)
224 2qe8_A Uncharacterized protein 97.5 0.0023 7.7E-08 56.1 14.2 118 43-162 19-156 (343)
225 3mbr_X Glutamine cyclotransfer 97.5 0.0061 2.1E-07 50.0 15.2 93 109-215 43-135 (243)
226 1npe_A Nidogen, entactin; glyc 97.4 0.026 8.9E-07 47.1 19.1 75 130-214 37-111 (267)
227 2hz6_A Endoplasmic reticulum t 97.4 0.00011 3.6E-09 65.4 4.2 61 142-215 10-70 (369)
228 3nol_A Glutamine cyclotransfer 97.4 0.0094 3.2E-07 49.4 15.5 92 110-215 66-157 (262)
229 3nol_A Glutamine cyclotransfer 97.3 0.019 6.6E-07 47.5 16.8 160 122-332 34-201 (262)
230 2iwa_A Glutamine cyclotransfer 97.3 0.059 2E-06 45.0 19.4 160 122-332 12-181 (266)
231 3mbr_X Glutamine cyclotransfer 97.2 0.073 2.5E-06 43.6 18.2 159 123-332 13-179 (243)
232 3v65_B Low-density lipoprotein 97.1 0.067 2.3E-06 47.5 19.2 180 110-332 97-277 (386)
233 3nok_A Glutaminyl cyclase; bet 97.1 0.059 2E-06 44.7 17.0 159 121-332 45-210 (268)
234 3v64_C Agrin; beta propeller, 97.0 0.14 4.8E-06 44.7 21.1 162 128-332 72-234 (349)
235 3hxj_A Pyrrolo-quinoline quino 97.0 0.023 7.7E-07 48.9 14.7 86 111-212 80-165 (330)
236 1kb0_A Quinohemoprotein alcoho 96.9 0.036 1.2E-06 53.3 17.1 51 279-332 457-507 (677)
237 3hxj_A Pyrrolo-quinoline quino 96.9 0.043 1.5E-06 47.1 15.6 90 107-214 115-204 (330)
238 1npe_A Nidogen, entactin; glyc 96.8 0.17 5.9E-06 42.0 20.7 94 108-213 57-155 (267)
239 2ece_A 462AA long hypothetical 96.8 0.064 2.2E-06 48.2 15.9 170 133-331 86-288 (462)
240 1ijq_A LDL receptor, low-densi 96.7 0.14 4.9E-06 43.9 17.8 167 127-331 28-194 (316)
241 2ece_A 462AA long hypothetical 96.7 0.14 4.8E-06 46.0 17.6 73 132-214 141-238 (462)
242 1yiq_A Quinohemoprotein alcoho 96.6 0.071 2.4E-06 51.4 16.4 51 279-332 455-505 (689)
243 3sjl_D Methylamine dehydrogena 96.6 0.032 1.1E-06 49.3 12.6 67 134-214 38-119 (386)
244 3v65_B Low-density lipoprotein 96.6 0.38 1.3E-05 42.6 19.7 97 108-214 137-235 (386)
245 3p5b_L Low density lipoprotein 96.4 0.45 1.6E-05 42.3 19.8 98 111-214 94-191 (400)
246 1n7d_A LDL receptor, low-densi 96.4 0.06 2.1E-06 51.9 14.2 97 111-214 388-485 (699)
247 2xe4_A Oligopeptidase B; hydro 96.4 0.089 3E-06 51.2 15.6 120 84-214 174-305 (751)
248 3q7m_A Lipoprotein YFGL, BAMB; 96.3 0.049 1.7E-06 47.9 12.3 59 142-215 240-298 (376)
249 2fp8_A Strictosidine synthase; 96.2 0.39 1.3E-05 41.1 17.4 72 130-214 127-217 (322)
250 3m0c_C LDL receptor, low-densi 96.0 1.1 3.9E-05 43.7 21.1 168 127-332 422-589 (791)
251 3qqz_A Putative uncharacterize 96.0 0.54 1.8E-05 38.9 16.5 174 124-331 22-203 (255)
252 2fp8_A Strictosidine synthase; 95.7 0.39 1.3E-05 41.1 14.9 171 130-332 20-216 (322)
253 3tc9_A Hypothetical hydrolase; 95.6 0.5 1.7E-05 42.5 15.6 32 301-332 270-301 (430)
254 3q7m_A Lipoprotein YFGL, BAMB; 95.4 1.2 4.1E-05 38.8 17.8 62 142-215 189-260 (376)
255 3c75_H MADH, methylamine dehyd 95.4 0.14 4.9E-06 45.9 11.3 52 151-215 99-160 (426)
256 2xe4_A Oligopeptidase B; hydro 95.3 0.35 1.2E-05 47.1 14.7 71 130-214 175-257 (751)
257 1mda_H Methylamine dehydrogena 95.1 0.11 3.8E-06 45.7 9.5 69 134-214 269-347 (368)
258 3amr_A 3-phytase; beta-propell 94.9 1.7 5.7E-05 37.7 16.1 100 106-213 47-162 (355)
259 3v64_C Agrin; beta propeller, 94.9 1.7 5.9E-05 37.7 20.8 97 108-214 94-192 (349)
260 1fwx_A Nitrous oxide reductase 94.5 0.19 6.5E-06 46.8 9.7 30 302-332 332-361 (595)
261 1kb0_A Quinohemoprotein alcoho 94.5 0.5 1.7E-05 45.3 13.2 56 277-332 496-567 (677)
262 3qqz_A Putative uncharacterize 94.2 2 6.8E-05 35.4 16.9 118 86-212 29-150 (255)
263 3s94_A LRP-6, low-density lipo 94.0 4.3 0.00015 38.4 18.5 183 109-332 18-202 (619)
264 1kv9_A Type II quinohemoprotei 93.9 2.1 7.2E-05 40.9 16.0 51 279-332 438-488 (668)
265 4a2l_A BT_4663, two-component 93.9 4.7 0.00016 39.3 18.9 153 128-332 262-436 (795)
266 4hw6_A Hypothetical protein, I 93.7 2.6 8.8E-05 37.9 15.5 28 304-331 276-303 (433)
267 3m0c_C LDL receptor, low-densi 93.6 5.7 0.0002 38.7 20.8 75 128-214 470-547 (791)
268 1n7d_A LDL receptor, low-densi 93.5 0.76 2.6E-05 44.2 12.2 73 130-213 454-528 (699)
269 2p4o_A Hypothetical protein; p 93.3 3.3 0.00011 34.9 17.1 94 108-213 52-147 (306)
270 2ad6_A Methanol dehydrogenase 93.3 2.3 7.7E-05 39.8 14.8 52 278-332 443-494 (571)
271 3sov_A LRP-6, low-density lipo 92.8 4.1 0.00014 34.8 21.4 161 130-331 36-196 (318)
272 2p4o_A Hypothetical protein; p 92.5 4.2 0.00014 34.2 18.8 72 129-214 32-105 (306)
273 1yiq_A Quinohemoprotein alcoho 91.5 0.18 6.2E-06 48.5 5.0 84 108-201 454-537 (689)
274 3pbp_A Nucleoporin NUP82; beta 91.4 4.2 0.00014 36.2 13.0 81 130-215 67-160 (452)
275 1ijq_A LDL receptor, low-densi 91.3 6.2 0.00021 33.5 21.1 76 129-214 77-153 (316)
276 1fwx_A Nitrous oxide reductase 90.8 0.29 9.9E-06 45.6 5.4 81 128-213 276-361 (595)
277 1k3i_A Galactose oxidase precu 90.5 6.1 0.00021 37.5 14.6 73 133-214 190-275 (656)
278 1flg_A Protein (quinoprotein e 90.5 8 0.00027 36.2 15.0 52 278-332 465-516 (582)
279 3sre_A PON1, serum paraoxonase 90.3 8.5 0.00029 33.4 16.7 33 300-332 220-252 (355)
280 3das_A Putative oxidoreductase 90.2 8.5 0.00029 33.3 14.1 32 129-161 32-63 (347)
281 2p9w_A MAL S 1 allergenic prot 89.9 8.7 0.0003 32.9 14.4 76 129-212 13-108 (334)
282 3tc9_A Hypothetical hydrolase; 89.1 12 0.00041 33.4 17.0 95 109-214 159-258 (430)
283 4a0p_A LRP6, LRP-6, low-densit 88.8 16 0.00055 34.5 21.0 161 129-332 37-197 (628)
284 3kya_A Putative phosphatase; s 88.3 15 0.00051 33.5 15.0 32 300-331 309-340 (496)
285 2wg3_C Hedgehog-interacting pr 85.1 15 0.0005 33.3 12.8 27 185-212 17-44 (463)
286 3p5b_L Low density lipoprotein 85.0 20 0.00067 31.6 22.6 76 129-214 159-235 (400)
287 3a9g_A Putative uncharacterize 84.6 17 0.00057 31.5 12.6 27 129-157 29-55 (354)
288 2g8s_A Glucose/sorbosone dehyd 83.9 20 0.00069 30.9 13.7 29 130-159 19-47 (353)
289 3pbp_A Nucleoporin NUP82; beta 83.9 5.3 0.00018 35.6 8.8 35 127-161 123-159 (452)
290 1w6s_A Methanol dehydrogenase 83.6 29 0.001 32.5 16.0 52 278-332 452-503 (599)
291 4hw6_A Hypothetical protein, I 82.6 26 0.0009 31.2 15.7 95 109-214 162-260 (433)
292 3sov_A LRP-6, low-density lipo 81.2 24 0.00082 29.9 20.2 74 129-214 79-155 (318)
293 2xbg_A YCF48-like protein; pho 80.8 14 0.00049 31.3 10.6 68 129-211 250-320 (327)
294 1k3i_A Galactose oxidase precu 80.4 6 0.00021 37.6 8.8 75 129-214 243-324 (656)
295 3v9f_A Two-component system se 79.1 48 0.0016 32.0 19.5 71 128-214 406-479 (781)
296 4a2l_A BT_4663, two-component 78.4 51 0.0017 31.9 21.1 73 128-214 356-437 (795)
297 4a0p_A LRP6, LRP-6, low-densit 77.5 49 0.0017 31.2 21.5 161 129-331 340-507 (628)
298 3s94_A LRP-6, low-density lipo 73.3 62 0.0021 30.4 22.1 160 130-332 350-510 (619)
299 2ad6_A Methanol dehydrogenase 73.0 5.3 0.00018 37.3 5.9 55 107-162 442-496 (571)
300 1cru_A Protein (soluble quinop 72.4 54 0.0019 29.4 14.5 32 129-161 27-58 (454)
301 1flg_A Protein (quinoprotein e 71.2 5.2 0.00018 37.5 5.4 54 108-162 465-518 (582)
302 1kv9_A Type II quinohemoprotei 67.1 6 0.0002 37.8 5.0 54 108-162 437-490 (668)
303 2p9w_A MAL S 1 allergenic prot 66.3 37 0.0013 29.0 9.2 71 130-213 138-215 (334)
304 4gq2_M Nucleoporin NUP120; bet 66.2 31 0.0011 34.5 10.0 29 185-214 239-267 (950)
305 2xzh_A Clathrin heavy chain 1; 64.6 68 0.0023 27.6 18.4 107 108-232 86-200 (365)
306 1xi4_A Clathrin heavy chain; a 64.0 1.4E+02 0.0047 31.5 13.9 94 108-214 85-189 (1630)
307 1tl2_A L10, protein (tachylect 57.8 20 0.00069 28.8 5.6 71 130-211 42-114 (236)
308 1w6s_A Methanol dehydrogenase 57.7 14 0.00046 34.8 5.5 54 108-162 452-505 (599)
309 3amr_A 3-phytase; beta-propell 53.1 1.1E+02 0.0037 26.4 9.9 100 108-212 98-209 (355)
310 3ei3_A DNA damage-binding prot 52.7 2.1E+02 0.0071 29.3 15.3 33 298-332 967-999 (1158)
311 3kya_A Putative phosphatase; s 48.7 66 0.0023 29.3 8.2 79 130-212 248-340 (496)
312 1bpo_A Protein (clathrin); cla 44.2 1.8E+02 0.0061 26.2 19.9 109 108-234 85-201 (494)
313 2xzh_A Clathrin heavy chain 1; 43.5 1.6E+02 0.0054 25.4 10.1 103 108-215 179-292 (365)
314 4fhn_B Nucleoporin NUP120; pro 43.4 67 0.0023 32.8 8.2 28 186-214 242-269 (1139)
315 1tl2_A L10, protein (tachylect 42.5 1.1E+02 0.0038 24.5 7.6 66 131-206 90-156 (236)
316 1xi4_A Clathrin heavy chain; a 42.3 2.6E+02 0.0089 29.6 11.9 95 108-214 124-236 (1630)
317 2ism_A Putative oxidoreductase 41.9 49 0.0017 28.4 6.2 71 130-213 32-114 (352)
318 3sre_A PON1, serum paraoxonase 38.6 1.1E+02 0.0036 26.4 7.7 71 130-213 166-252 (355)
319 3v9f_A Two-component system se 36.1 3E+02 0.01 26.4 20.6 72 128-214 312-393 (781)
320 3sbq_A Nitrous-oxide reductase 34.9 1.4E+02 0.0049 27.8 8.0 83 126-213 320-408 (638)
321 4gq2_M Nucleoporin NUP120; bet 28.1 57 0.0019 32.6 4.7 32 130-162 237-268 (950)
322 1cru_A Protein (soluble quinop 27.7 64 0.0022 28.9 4.6 30 301-331 27-56 (454)
323 2xn4_A Kelch-like protein 2; s 27.3 1.9E+02 0.0065 23.5 7.4 62 142-214 206-277 (302)
324 3ii7_A Kelch-like protein 7; p 24.2 2.9E+02 0.0098 22.4 13.1 20 142-161 103-128 (306)
325 2vpj_A Kelch-like protein 12; 24.1 2.8E+02 0.0097 22.4 13.6 62 142-214 114-185 (301)
326 4fhn_B Nucleoporin NUP120; pro 23.4 65 0.0022 32.9 4.2 32 130-162 239-270 (1139)
327 2xn4_A Kelch-like protein 2; s 23.2 3E+02 0.01 22.3 13.3 21 311-332 251-276 (302)
328 2wg3_C Hedgehog-interacting pr 22.5 1.3E+02 0.0045 27.0 5.6 30 130-159 15-44 (463)
329 3f7f_A Nucleoporin NUP120; nuc 21.4 99 0.0034 29.6 4.7 31 129-162 222-252 (729)
330 3a9g_A Putative uncharacterize 21.2 2.7E+02 0.0092 23.6 7.3 65 131-200 137-215 (354)
331 1zgk_A Kelch-like ECH-associat 21.2 3.4E+02 0.012 22.1 12.4 21 194-214 122-147 (308)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.2e-40 Score=301.57 Aligned_cols=348 Identities=42% Similarity=0.607 Sum_probs=240.3
Q ss_pred ccchHHHHhhhhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEE
Q psy4579 6 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLL 85 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (368)
.+++.+|++.++++||+||+|+|++|+++.++.++||++|++|.|+.... .++.+ ....+..||++...++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~----~~~~~--~~~~~~~GT~t~~~~n~i~ 84 (430)
T 2xyi_A 11 SFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQ----DGKDY--SVHRLILGTHTSDEQNHLL 84 (430)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEEC----TTCSC--EEEEEEEECCCSSSCEEEE
T ss_pred ccccchhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccc----cCCCc--ceEEEEEEEcCCCCCCEEE
Confidence 34567788999999999999999999999999999999999999987532 22222 2345678999888788888
Q ss_pred EEEEecCCCccccccCCcccCCCCcccCCCC-Ceee-eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 86 IASVQLPNEDAQFDASNYDTDKGGNVQLPNE-DAQF-DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~-~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
+..+.+|..........|+. .++.+..+.. .+++ ......|.+.|++++|+|+++.+||+++.||.|++||+.+...
T Consensus 85 i~~~~lp~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~ 163 (430)
T 2xyi_A 85 IASVQLPSEDAQFDGSHYDN-EKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS 163 (430)
T ss_dssp EEEEEEC---------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCS
T ss_pred EEEEECCCCccccccccccc-cccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccc
Confidence 99888875543333333332 2344444432 2233 3556789999999999998448999999999999999986311
Q ss_pred CC---cccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEe
Q psy4579 164 EN---RVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240 (368)
Q Consensus 164 ~~---~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 240 (368)
.. ....+...+.+|...+. +++|+|++..+|++|+.||.|++||++..........+...+.+|...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~h~~~v~---~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 164 KPEPSGECQPDLRLRGHQKEGY---GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240 (430)
T ss_dssp SCCTTCCCCCSEEEECCSSCCC---CEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEEC
T ss_pred ccCccccCCCcEEecCCCCCeE---EEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEe
Confidence 10 01235678899999995 9999998444999999999999999988654333334456777899999999997
Q ss_pred e---ecccccCCCCccceEEEE--------------------eecCCcccccccccccCCCCCcccccCCCCceeeeeec
Q psy4579 241 R---LILGTHTSDEQNHLLIAS--------------------VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI 297 (368)
Q Consensus 241 ~---~~~~~~~~d~~~~~~~~~--------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 297 (368)
+ .++++++.++.+++|... +.+.+....+.+.. ...+.+.+|+.+..........
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg--~~dg~v~vwd~~~~~~~~~~~~ 318 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG--SADKTVALWDLRNLKLKLHSFE 318 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEE--ETTSEEEEEETTCTTSCSEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEE--eCCCeEEEEeCCCCCCCeEEee
Confidence 6 577788888777777432 12222222111111 2335677888887443333333
Q ss_pred CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCC----CCCCCCCceeeecccCceeeecceeee
Q psy4579 298 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD----PNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 298 ~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+|...|.+++|+|+++.+|++++.||.|++||++....... ..+....+..+.+|.+.|++++|+|+.
T Consensus 319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 89999999999999988999999999999999986332110 001123445567899999999999974
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=272.14 Aligned_cols=280 Identities=16% Similarity=0.121 Sum_probs=194.9
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeee-----ccccCC-----CCCcEE
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDK-----GTHTSD-----EQNHLL 85 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~ 85 (368)
.....+.|....... ..++-.+.+++|+|||++|++++ ++++++|+-.+.. ...... .+....
T Consensus 12 ~p~~~r~w~~~~~~~------~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (344)
T 4gqb_B 12 VPPAAREWNLPPNAP------ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG 84 (344)
T ss_dssp -----------CCSC------SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSC
T ss_pred CCccccccCCCCCCc------ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCC
Confidence 444556676543221 12344588999999999998776 6677777532211 001000 111224
Q ss_pred EEEEecCCCccccccCCcccCCCCcccCCCCCee-----eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCC
Q psy4579 86 IASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ-----FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINA 160 (368)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 160 (368)
|.++.|.+++..+.+ +.||+|++||.+.. ......+|.+.|++++|+|++ ++|++|+.||+|++||+++
T Consensus 85 v~~~~~s~d~~l~~~-----s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 85 VADLTWVGERGILVA-----SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEEETTTEEEEE-----ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred EEEEEEeCCCeEEEE-----ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC
Confidence 778888665433322 35999999997642 223456899999999999999 9999999999999999988
Q ss_pred CCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee--ecccccEeEEE
Q psy4579 161 TPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVEDYS 238 (368)
Q Consensus 161 ~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~v~ 238 (368)
+. ++..+.+|.+.|. +++|+|++..+|++|+.|++|++||++++. +...+ ..+...+.+++
T Consensus 159 ~~-------~~~~~~~h~~~V~---~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 159 QV-------VLSSYRAHAAQVT---CVAASPHKDSVFLSCSEDNRILLWDTRCPK-------PASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp TE-------EEEEECCCSSCEE---EEEECSSCTTEEEEEETTSCEEEEETTSSS-------CEEECC----CCCEEEEE
T ss_pred Cc-------EEEEEcCcCCceE---EEEecCCCCCceeeeccccccccccccccc-------eeeeeecceeeccceeee
Confidence 64 5788999999996 999999856789999999999999999873 33333 33556788999
Q ss_pred Eee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcE
Q psy4579 239 IHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCV 315 (368)
Q Consensus 239 ~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 315 (368)
|++ .++++++.|+.+ .+||..+++....+. +|...|++++|+|++..+
T Consensus 222 ~~p~~~~~l~sg~~dg~v----------------------------~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTV----------------------------SLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ECSSCTTEEEEEETTSEE----------------------------EEEESCC--CCEEEE-CCSSCEEEEEECSSSSCC
T ss_pred ecCCCCcceEEeccCCcE----------------------------EEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeE
Confidence 975 234444444433 344445566666665 899999999999998778
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 316 IATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 316 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|||||.|++|+|||++. ..+..+.+|.+.|++++|+|..
T Consensus 273 lasgs~D~~i~vwd~~~-----------~~~~~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSL-----------SELFRSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp EEEEETTSCEEEECTTC-----------CEEEEECCCSSCEEEEEECSSS
T ss_pred EEEEeCCCeEEEEECCC-----------CcEEEEcCCCCCEEEEEEeCCC
Confidence 99999999999999974 2345678999999999999864
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-35 Score=268.90 Aligned_cols=282 Identities=16% Similarity=0.170 Sum_probs=212.5
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCC-CcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQ-NHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.-||.+++|+|++..+++|+.|+.+++|++.. +....... ....|.++.|.+.+..+.. + +.||+|++|+..
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~~l~s-g---s~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLAS-C---SADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEE-E---ETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCCEEEE-E---eCCCeEEEEeCC
Confidence 456899999999999999999999997776543 33322211 2235778888655443332 2 369999999987
Q ss_pred e-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCe
Q psy4579 118 A-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 118 ~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~ 196 (368)
+ +....+.+|...|.+++|+|++ ++|++|+.|++|++||++++. +...+.+|...+. ++.|+|+ +.+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~h~~~v~---~~~~~~~-g~~ 248 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVR---MVRPNQD-GTL 248 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEE---EEEECTT-SSE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-------EEEEEeCCCccEE---EEEECCC-CCE
Confidence 5 5566778899999999999998 899999999999999998874 5678899999996 9999998 999
Q ss_pred EEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecc--cccCCCCccceEEEEeecCCcccccccccc
Q psy4579 197 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLIL--GTHTSDEQNHLLIASVQLPNEDAQFDASNY 274 (368)
Q Consensus 197 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
|++|+.|++|++||++++ .+...+.+|...|.+++|+|... ......+..... ....+..+...
T Consensus 249 l~s~s~D~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~l~sg-- 314 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATK-------ECKAELREHRHVVECISWAPESSYSSISEATGSETKK-----SGKPGPFLLSG-- 314 (410)
T ss_dssp EEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------------CCEEEEE--
T ss_pred EEEEcCCCeEEEEECCCC-------ceeeEecCCCceEEEEEEcCcccccchhhhccccccc-----cCCCCCEEEEE--
Confidence 999999999999999887 45677889999999999986311 000000000000 00000111111
Q ss_pred cCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC
Q psy4579 275 DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354 (368)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~ 354 (368)
...+.+.+|+..++.....+. +|...|.+++|+|++ .+|++|+.||+|++||++. ...+..+.+|..
T Consensus 315 -s~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~----------~~~~~~~~~h~~ 381 (410)
T 1vyh_C 315 -SRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN----------KRCMKTLNAHEH 381 (410)
T ss_dssp -ETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT----------SCCCEEEECCSS
T ss_pred -eCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC----------CceEEEEcCCCC
Confidence 133457778888888777776 899999999999999 5777999999999999975 345567889999
Q ss_pred ceeeecceeee
Q psy4579 355 EGLIEGTYNCY 365 (368)
Q Consensus 355 ~V~~l~w~p~~ 365 (368)
.|++++|+|+.
T Consensus 382 ~v~~l~~~~~~ 392 (410)
T 1vyh_C 382 FVTSLDFHKTA 392 (410)
T ss_dssp CEEEEEECSSS
T ss_pred cEEEEEEcCCC
Confidence 99999999975
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-35 Score=258.26 Aligned_cols=265 Identities=15% Similarity=0.132 Sum_probs=202.1
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.-+|.+++|+|++++|++++.||.+++|+... +...... .....+..+.+.+....+..+ +.||.|++|+..
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----s~d~~i~vwd~~ 85 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVG----SDDFRIRVFNYN 85 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEE----CCCCEEEEEECC
Confidence 456899999999999999999999997776543 3222221 112235666665444333322 358999999986
Q ss_pred e-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCe
Q psy4579 118 A-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 118 ~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~ 196 (368)
. +....+.+|.+.|++++|+|++ .+|++|+.||+|++||++++.. ....+.+|...|. +++|+|.++.+
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~------~~~~~~~h~~~v~---~v~~~p~~~~~ 155 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA------LEQTFEGHEHFVM---CVAFNPKDPST 155 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE------EEEEECCCCSCEE---EEEECTTCTTE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc------hhhhhcccCCcEE---EEEECCCCCCE
Confidence 4 5666778899999999999998 8999999999999999987532 4567889999996 99999965889
Q ss_pred EEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee----ecccccCCCCccceEEEEeecCCcccccccc
Q psy4579 197 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR----LILGTHTSDEQNHLLIASVQLPNEDAQFDAS 272 (368)
Q Consensus 197 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
|++|+.|++|++||+++... ......+|...+..++|.+ ..+.+++.|+.
T Consensus 156 l~sgs~D~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-------------------- 209 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-------------------- 209 (304)
T ss_dssp EEEEETTSEEEEEETTCSSC------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE--------------------
T ss_pred EEEEeCCCeEEEEECCCCCc------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe--------------------
Confidence 99999999999999987632 1223345667888888865 23444444433
Q ss_pred cccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecc
Q psy4579 273 NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH 352 (368)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh 352 (368)
+.+|+..+++....+. +|...|.+++|+|++ .+|+||+.||+|++||++. ...+..+.+|
T Consensus 210 --------i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~----------~~~~~~~~~~ 269 (304)
T 2ynn_A 210 --------IKIWDYQTKSCVATLE-GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST----------YKVEKTLNVG 269 (304)
T ss_dssp --------EEEEETTTTEEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT----------CCEEEEECCS
T ss_pred --------EEEEeCCCCccceeeC-CCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCC----------CceeeeccCC
Confidence 4445555666666666 899999999999999 5888999999999999975 4455678899
Q ss_pred cCceeeecceeee
Q psy4579 353 QKEGLIEGTYNCY 365 (368)
Q Consensus 353 ~~~V~~l~w~p~~ 365 (368)
...+++++|+|..
T Consensus 270 ~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 270 LERSWCIATHPTG 282 (304)
T ss_dssp SSSEEEEEECTTC
T ss_pred CccEEEEEECCCC
Confidence 9999999999864
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-35 Score=264.31 Aligned_cols=264 Identities=14% Similarity=0.131 Sum_probs=191.2
Q ss_pred cccCceeeEecCCcccccCCCCcccccc-----CcceeeeccccCC-----CCCcEEEEEEecCCCccccccCCcccCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDA-----SNYDTDKGTHTSD-----EQNHLLIASVQLPNEDAQFDASNYDTDKG 108 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
++-+|.+++|+|||++|++++.+.. ++ +.|+...+..... .+....|.++.|.+++..+.+ +.|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~-~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~-----s~d 114 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSS-RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-----SDS 114 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSS-SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEE-----ETT
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCC-ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEE-----ECC
Confidence 4567999999999999999988532 22 3344333322211 112234788888665544433 248
Q ss_pred CcccCCCCCeee-----eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceec
Q psy4579 109 GNVQLPNEDAQF-----DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEV 183 (368)
Q Consensus 109 g~i~i~~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 183 (368)
|+|++|+..... .....+|.+.|++++|+|++ ++|++|+.||+|++||++++. +...+.+|...|.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~-------~~~~~~~h~~~v~- 185 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA-------VLKSYNAHSSEVN- 185 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEE-
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc-------EEEEEcCCCCCEE-
Confidence 999999986432 12345799999999999999 999999999999999998864 5678899999996
Q ss_pred ceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEEEe
Q psy4579 184 RYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIASV 260 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~~~ 260 (368)
+++|+|++..++++++.||+|++||++++.... ...+..|...+.+++|+| .++++++.++.
T Consensus 186 --~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-----~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-------- 250 (357)
T 4g56_B 186 --CVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-----RIDFCASDTIPTSVTWHPEKDDTFACGDETGN-------- 250 (357)
T ss_dssp --EEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-----BCCCTTCCSCEEEEEECTTSTTEEEEEESSSC--------
T ss_pred --EEEEccCCCceeeeeccCCceEEEECCCCceee-----eeeeccccccccchhhhhcccceEEEeecccc--------
Confidence 999999855789999999999999998874311 122345677899999985 23444444433
Q ss_pred ecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCC
Q psy4579 261 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPN 340 (368)
Q Consensus 261 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~ 340 (368)
+.+|+..+++....+. +|...|++++|+|++..+||+|+.|++|+|||++.
T Consensus 251 --------------------i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-------- 301 (357)
T 4g56_B 251 --------------------VSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-------- 301 (357)
T ss_dssp --------------------EEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--------
T ss_pred --------------------eeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--------
Confidence 3344444555555555 89999999999999878899999999999999974
Q ss_pred CCCCCceeeecccCceeeecceee
Q psy4579 341 GECHPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 341 ~~~~~~~~~~gh~~~V~~l~w~p~ 364 (368)
.......+|.+.|++|+|+|.
T Consensus 302 ---~~~~~~~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 302 ---SEVFRDLSHRDFVTGVAWSPL 322 (357)
T ss_dssp ---CEEEEECCCSSCEEEEEECSS
T ss_pred ---CcEeEECCCCCCEEEEEEeCC
Confidence 223455699999999999983
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=253.93 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=204.9
Q ss_pred cccccCceeeEecCC----cccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcc
Q psy4579 37 HALEWPSLTAQWLPD----VTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNV 111 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i 111 (368)
..+.-+|.+++|+|+ ++.|++|+.|+.+++|+++......... ......|.++.+.+....+. ++ +.||.|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~-s~---s~D~~i 104 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAA-SS---SLDAHI 104 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEE-EE---ETTSEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEE-EE---eCCCcE
Confidence 346778999999985 6689999999999888765432222211 12223467777755443332 22 469999
Q ss_pred cCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 112 QLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 112 ~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
++|+... +....+..|...+.+++|+|++ ++|++|+.||.|++||++++. ....+..|...+. +++|+
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~---~~~~s 173 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFIL---SIAYS 173 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEE---EEEEC
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEE---EEEEC
Confidence 9999864 5556667788999999999999 999999999999999998764 4566778888885 99999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccc
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQ 268 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 268 (368)
|+ +.+|++|+.||.|++||++++ .++..+.+|...|.+++|+| ..+++++.|+.+++
T Consensus 174 pd-g~~lasg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i------------- 232 (321)
T 3ow8_A 174 PD-GKYLASGAIDGIINIFDIATG-------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI------------- 232 (321)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEE-------------
T ss_pred CC-CCEEEEEcCCCeEEEEECCCC-------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE-------------
Confidence 99 999999999999999999887 45678889999999999986 34555555544444
Q ss_pred cccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCcee
Q psy4579 269 FDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR 348 (368)
Q Consensus 269 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (368)
|+...+.....+. +|...|.+++|+|++ .+|++|+.|++|++||++. ...+..
T Consensus 233 ---------------wd~~~~~~~~~~~-~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~----------~~~~~~ 285 (321)
T 3ow8_A 233 ---------------YDVQHANLAGTLS-GHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT----------RTCVHT 285 (321)
T ss_dssp ---------------EETTTCCEEEEEC-CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEE
T ss_pred ---------------EECCCcceeEEEc-CCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC----------CEEEEE
Confidence 3334455555554 899999999999999 6788999999999999975 445667
Q ss_pred eecccCceeeecceeee
Q psy4579 349 LRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 349 ~~gh~~~V~~l~w~p~~ 365 (368)
+.+|.+.|++++|+|+.
T Consensus 286 ~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp ECCCSSCEEEEEECTTS
T ss_pred EcCCCCcEEEEEECCCC
Confidence 88999999999999874
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-33 Score=271.30 Aligned_cols=314 Identities=12% Similarity=0.098 Sum_probs=227.6
Q ss_pred hhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCcc
Q psy4579 18 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDA 96 (368)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 96 (368)
+..++|+...+.....+..| ..++.+++|+|||++||+|+.|+.+++|+........... ......|.++.|.+++.
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h--~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEH--SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp TEEEEEETTCSSCCEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred CEEEEecCCCcccCeEecCC--CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence 46678888777666655443 4579999999999999999999999777643211111111 11123478888877766
Q ss_pred ccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec
Q psy4579 97 QFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176 (368)
Q Consensus 97 ~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 176 (368)
.+.+.+.+....+.|++|+. +.....+.+|.+.|++++|+|+++..|++|+.|++|++||..+.+ ....+.+
T Consensus 117 ~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------~~~~l~~ 188 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------FKSTFGE 188 (611)
T ss_dssp EEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------EEEEECC
T ss_pred EEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------Eeeeecc
Confidence 66555433334578999995 345566789999999999999984479999999999999987653 4578899
Q ss_pred cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeee-------cccccEeEEEEee--eccccc
Q psy4579 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-------GHTAVVEDYSIHR--LILGTH 247 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~~--~~~~~~ 247 (368)
|...|. +++|+|+ +.+|++|+.|++|++||+.++. +...+. +|...|.+++|+| ..++++
T Consensus 189 H~~~V~---~v~fspd-g~~las~s~D~~i~lwd~~~g~-------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 189 HTKFVH---SVRYNPD-GSLFASTGGDGTIVLYNGVDGT-------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp CSSCEE---EEEECTT-SSEEEEEETTSCEEEEETTTCC-------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred ccCceE---EEEECCC-CCEEEEEECCCcEEEEECCCCc-------EeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 999996 9999999 9999999999999999998763 334442 7999999999986 567888
Q ss_pred CCCCccceEEEEe-------ecCCcc-ccccccccc-------CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCC
Q psy4579 248 TSDEQNHLLIASV-------QLPNED-AQFDASNYD-------TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQN 312 (368)
Q Consensus 248 ~~d~~~~~~~~~~-------~~~~~~-~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 312 (368)
+.|+.+++|.... ...... .......++ ...+.+.+|+...++....+. +|...|++++|+|++
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADG 336 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTS
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCC
Confidence 8898888885321 000000 000000011 123556777777776554444 899999999999999
Q ss_pred CcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee-ecccCceeeecceee
Q psy4579 313 PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL-RGHQKEGLIEGTYNC 364 (368)
Q Consensus 313 ~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~w~p~ 364 (368)
.+|++|+.|++|++||+... .....+ .+|...|.+++|+|.
T Consensus 337 -~~l~s~s~D~~v~~Wd~~~~----------~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 337 -KTLFSADAEGHINSWDISTG----------ISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp -SEEEEEETTSCEEEEETTTC----------CEEECSSCSCSSCEEEEEECTT
T ss_pred -CEEEEEeCCCcEEEEECCCC----------ceeeecccCCcceEEEEEECCC
Confidence 68889999999999999751 211222 579999999999864
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.8e-33 Score=249.28 Aligned_cols=262 Identities=16% Similarity=0.157 Sum_probs=200.8
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.-++.+++|+||+++|++++.||.+++|+.. .+..... ......+.++.+.+.+..+.+. +.||.+++|+..
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d~~v~iw~~~ 127 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACG----GLDNICSIYNLK 127 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEEECSSSCEEEEEECTTSSEEEEE----ETTCEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECC--CCCcceEeecCCccEEEEEECCCCCEEEEE----eCCCeEEEEECc
Confidence 45689999999999999999999999777543 2222211 1112346677776555443333 358999999975
Q ss_pred e-----eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC
Q psy4579 118 A-----QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 118 ~-----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~ 192 (368)
. .....+.+|.+.|.++.|++++ .+++++.|++|++||++++. +...+.+|.+.|. +++|+|+
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~-------~~~~~~~h~~~v~---~~~~~~~ 195 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ-------QTTTFTGHTGDVM---SLSLAPD 195 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEE---EEEECTT
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCc-------EEEEEcCCCCceE---EEEECCC
Confidence 4 3445677899999999999885 59999999999999998764 5678899999996 9999998
Q ss_pred CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccc
Q psy4579 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFD 270 (368)
Q Consensus 193 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 270 (368)
+.+|++|+.||+|++||++++ .+...+.+|...|++++|+| ..+++++.|+.+++|
T Consensus 196 -~~~l~sg~~d~~v~~wd~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw-------------- 253 (340)
T 1got_B 196 -TRLFVSGACDASAKLWDVREG-------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-------------- 253 (340)
T ss_dssp -SSEEEEEETTSCEEEEETTTC-------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE--------------
T ss_pred -CCEEEEEeCCCcEEEEECCCC-------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE--------------
Confidence 899999999999999999887 45678889999999999986 345555555444443
Q ss_pred cccccCCCCCcccccCCCCceeeeee-cCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee
Q psy4579 271 ASNYDTDKGDFGGFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL 349 (368)
Q Consensus 271 ~~~~d~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 349 (368)
+..+++....+. ..+...|.+++|+|++ .+|++|+.||.|++||+.. ...+..+
T Consensus 254 --------------d~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~----------~~~~~~~ 308 (340)
T 1got_B 254 --------------DLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK----------ADRAGVL 308 (340)
T ss_dssp --------------ETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------CCEEEEE
T ss_pred --------------ECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEccc----------CcEeeEe
Confidence 333444333332 1234579999999999 6888999999999999975 3455678
Q ss_pred ecccCceeeecceeee
Q psy4579 350 RGHQKEGLIEGTYNCY 365 (368)
Q Consensus 350 ~gh~~~V~~l~w~p~~ 365 (368)
.+|.+.|.+++|+|+.
T Consensus 309 ~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 309 AGHDNRVSCLGVTDDG 324 (340)
T ss_dssp ECCSSCEEEEEECTTS
T ss_pred ecCCCcEEEEEEcCCC
Confidence 8999999999999974
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=249.81 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=180.7
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-----CCCcEEEEEEecCCCccccccCCcccCCCCcccC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-----EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQL 113 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i 113 (368)
.+-++.+++|+|++ .+++|+.||.|++|+.+ .+..... ......|.++.|.+.+..+... +.||+|++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~--~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg----s~d~~i~i 153 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELD--ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG----SKDICIKV 153 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEEC--TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEE
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEecc--CCCceeEeeccccCCCCCEEEEEECCCCCEEEEE----eCCCeEEE
Confidence 45679999999996 46789999999776543 3322111 1122357888886655444332 36899999
Q ss_pred CCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee--eccccceecceeeEEe
Q psy4579 114 PNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVEVRYGLSWN 190 (368)
Q Consensus 114 ~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~i~~~ 190 (368)
|+... +....+.+|.+.|++++|+|++..+|++|+.||+|++||+++++ +...+ ..|...+. +++|+
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~~~~~---~~~~~ 223 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-------PASQIGCSAPGYLPT---SLAWH 223 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-------CEEECC----CCCEE---EEEEC
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-------eeeeeecceeeccce---eeeec
Confidence 99864 56677888999999999999986789999999999999998875 23333 33445564 99999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEEEeecCCccc
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDA 267 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (368)
|+++.+|++|+.||+|++||++++ .++..+.+|...|++++|+| .++++++.|+.+++|
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~-------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw----------- 285 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKST-------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL----------- 285 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC---------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE-----------
T ss_pred CCCCcceEEeccCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE-----------
Confidence 986889999999999999999987 45778999999999999986 345555555554443
Q ss_pred ccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 268 QFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 268 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|..++++ ..+ .+|.+.|++++|+|+++.+|+|||.||+|++|++..
T Consensus 286 -----------------d~~~~~~-~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 286 -----------------DSSLSEL-FRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -----------------CTTCCEE-EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -----------------ECCCCcE-EEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 3334443 333 389999999999999988999999999999999975
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=247.26 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=207.2
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeecc--ccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe-
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT--HTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA- 118 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~- 118 (368)
++.+++|+|++++|++|+.|+.+++|+....... ..........|.++.|.+.+..+..+ +.||.+++|+.+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA----SFDATTCIWKKNQD 93 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE----ECCCcEEEEEccCC
Confidence 7889999999999999999999977755432111 11112223457888886655444333 3589999998754
Q ss_pred --eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCe
Q psy4579 119 --QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 119 --~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~ 196 (368)
.....+.+|...|.+++|+|++ ++|++|+.|++|++||+..... ......+.+|...|. +++|+|+ +.+
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~h~~~v~---~~~~~p~-~~~ 164 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDE----YECVSVLNSHTQDVK---HVVWHPS-QEL 164 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSC----EEEEEEECCCCSCEE---EEEECSS-SSC
T ss_pred CeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCC----eEEEEEecCcCCCeE---EEEECCC-CCE
Confidence 3456678899999999999998 9999999999999999986532 123567889999996 9999999 899
Q ss_pred EEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccccc
Q psy4579 197 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNY 274 (368)
Q Consensus 197 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
|++|+.|++|++||++.+. ..+...+.+|...|++++|+| ..+++++.|+.+++|.... +...........
T Consensus 165 l~s~s~d~~i~~w~~~~~~-----~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~--~~~~~~~~~~~~ 237 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDD-----WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL--PGNEQGVACSGS 237 (345)
T ss_dssp EEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC--TTCTTCCCCC--
T ss_pred EEEEeCCCcEEEEEecCCC-----EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc--CCCCccceeecc
Confidence 9999999999999987652 123567889999999999986 5778888888888886432 111111100000
Q ss_pred cCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC
Q psy4579 275 DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354 (368)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~ 354 (368)
.........+...|...|.+++|+|++ ..|++++.|+.|++|+.........+.. ......+.+|.+
T Consensus 238 -----------~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~~ 304 (345)
T 3fm0_A 238 -----------DPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTF-SLTAHLHQAHSQ 304 (345)
T ss_dssp ------------CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCE-EEEEEETTSSSS
T ss_pred -----------CCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeE-EEEeeecccccC
Confidence 001122333333489999999999999 5788999999999999875321110000 000112358999
Q ss_pred ceeeecceeee
Q psy4579 355 EGLIEGTYNCY 365 (368)
Q Consensus 355 ~V~~l~w~p~~ 365 (368)
.|++++|+|..
T Consensus 305 ~V~~v~~~p~~ 315 (345)
T 3fm0_A 305 DVNCVAWNPKE 315 (345)
T ss_dssp CEEEEEECSSS
T ss_pred cEeEeEEeCCC
Confidence 99999999964
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=245.63 Aligned_cols=265 Identities=15% Similarity=0.097 Sum_probs=199.9
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA 118 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~ 118 (368)
+.-+|.+++|+|++++|++|+.|+.+++|+.......+..... ...+..+.+.+.+..+.+. +.|+.+++|+...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~lasg----~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGCAIACG----GLDNKCSVYPLTF 137 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSSEEEEE----STTSEEEEEECCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCCEEEEe----eCCCCEEEEEEec
Confidence 5668999999999999999999999977754322211111111 1235566675555444433 3589999997642
Q ss_pred -------eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeC
Q psy4579 119 -------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191 (368)
Q Consensus 119 -------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p 191 (368)
.....+..|...|.+++|+|++ ..|++|+.||+|++||++++. +...+.+|...|. +++|+|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~---~~~~~~ 206 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQ-------LLQSFHGHGADVL---CLDLAP 206 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEE---EEEECC
T ss_pred cccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCe-------EEEEEcCCCCCeE---EEEEEe
Confidence 2234456799999999999998 899999999999999998874 5688999999995 999988
Q ss_pred C-CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccc
Q psy4579 192 S-LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQ 268 (368)
Q Consensus 192 ~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 268 (368)
. ++++|++|+.||+|++||++++ .++..+.+|...|++++|+| ..+++++.|+.+++|
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw------------ 267 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSG-------QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY------------ 267 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE------------
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC-------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE------------
Confidence 5 2579999999999999999987 45678889999999999986 355565555555554
Q ss_pred cccccccCCCCCcccccCCCCceeeeee-cCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCce
Q psy4579 269 FDASNYDTDKGDFGGFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL 347 (368)
Q Consensus 269 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 347 (368)
++..++....+. ..+...+.+++|+|++ .+|++|+.|++|++||+.. ..++.
T Consensus 268 ----------------d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~----------~~~~~ 320 (354)
T 2pbi_B 268 ----------------DLRADREVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLK----------GSRVS 320 (354)
T ss_dssp ----------------ETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------CSEEE
T ss_pred ----------------ECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCC----------CceEE
Confidence 232333322222 1234578999999999 6888999999999999965 34556
Q ss_pred eeecccCceeeecceeee
Q psy4579 348 RLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 348 ~~~gh~~~V~~l~w~p~~ 365 (368)
.+.+|.+.|.+++|+|+.
T Consensus 321 ~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp EECCCSSCEEEEEECTTS
T ss_pred EEECCCCcEEEEEECCCC
Confidence 788999999999999974
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-32 Score=248.10 Aligned_cols=267 Identities=19% Similarity=0.219 Sum_probs=195.4
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA 118 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~ 118 (368)
+.-+|.+++|+|++++|++|+.|+.+++|+.......+..... ...|.++.+.+.+..+.+. +.|+.+++|+...
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g~~las~----~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNGQSVACG----GLDSACSIFNLSS 139 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTSSEEEEC----CSSSCCEEEECCC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCCCEEEEe----eCCCcEEEEECCC
Confidence 4568999999999999999999999977764332211111111 1124455665554444333 3589999998753
Q ss_pred e--------eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee-----eccccceecce
Q psy4579 119 Q--------FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-----TGHTAVVEVRY 185 (368)
Q Consensus 119 ~--------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~ 185 (368)
. ....+.+|.+.|.++.|+|+++..|++|+.|++|++||+.++. ....+ .+|...+.
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~~~~~~h~~~v~--- 209 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-------RISIFGSEFPSGHTADVL--- 209 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-------EEEEECCCSSSSCCSCEE---
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-------EEEEeecccCCCCccCeE---
Confidence 2 2345678999999999999875789999999999999998874 23333 67888885
Q ss_pred eeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecC
Q psy4579 186 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLP 263 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~ 263 (368)
+++|+|.++++|++|+.||+|++||++... .++..+.+|...|++++|+| ..+++++.|+.+++|.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd------ 277 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITS------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD------ 277 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTC------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE------
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCC------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE------
Confidence 999988558999999999999999998543 34677889999999999986 4566666666666653
Q ss_pred CcccccccccccCCCCCcccccCCCCceeeeeec------CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCC
Q psy4579 264 NEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI------NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP 337 (368)
Q Consensus 264 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~ 337 (368)
+.++.....+.. .+...|.+++|+|++ .+|++|+.||.|++||+..
T Consensus 278 ----------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~----- 329 (380)
T 3iz6_a 278 ----------------------MRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLL----- 329 (380)
T ss_dssp ----------------------TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTT-----
T ss_pred ----------------------CCCCcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCC-----
Confidence 223333222211 233458999999999 6888999999999999864
Q ss_pred CCCCCCCCceee----ecccCceeeecceeee
Q psy4579 338 DPNGECHPDLRL----RGHQKEGLIEGTYNCY 365 (368)
Q Consensus 338 ~~~~~~~~~~~~----~gh~~~V~~l~w~p~~ 365 (368)
......+ .+|.+.|.+++|+|+.
T Consensus 330 -----~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 330 -----AEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp -----CCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred -----CceEEEEecccCCCCCceEEEEECCCC
Confidence 2222233 5899999999999975
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.9e-32 Score=259.24 Aligned_cols=322 Identities=16% Similarity=0.195 Sum_probs=215.7
Q ss_pred hhhhhhhhhhcCcc--hheeecccccccCceeeEecCCcccccCCCCcc--ccccCcceeeeccccCCCC-CcEEEEEEe
Q psy4579 16 INEEYKIWKKNTPF--LYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDA--QFDASNYDTDKGTHTSDEQ-NHLLIASVQ 90 (368)
Q Consensus 16 ~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 90 (368)
.+...++|+..... +...+ ..+.-++.+++|+||+++|++++.+. ...++.|+. +....... ....|.++.
T Consensus 79 ~d~~v~lWd~~~~~~~~~~~~--~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 79 VHGNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVD 154 (611)
T ss_dssp TTSEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEE
T ss_pred CCCCEEEeECCCCcceeeEee--cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEE
Confidence 35678899875332 22122 23456899999999999999876653 122344443 32222222 223588888
Q ss_pred cCCCccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccc
Q psy4579 91 LPNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 169 (368)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 169 (368)
|.+......+++ +.|++|++|+... +....+.+|.+.|++++|+|++ .+||+|+.|++|++||+.++.
T Consensus 155 f~p~~~~~l~s~---s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~------- 223 (611)
T 1nr0_A 155 FKPSRPFRIISG---SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT------- 223 (611)
T ss_dssp ECSSSSCEEEEE---ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC-------
T ss_pred ECCCCCeEEEEE---eCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc-------
Confidence 866554323332 4699999999764 5566778899999999999999 999999999999999998764
Q ss_pred cceeee-------ccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCcc----------------------
Q psy4579 170 AKTIFT-------GHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV---------------------- 220 (368)
Q Consensus 170 ~~~~~~-------~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------------- 220 (368)
....+. +|.+.|. +++|+|+ +.+|++|+.|++|++||++++.....+
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~---~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVF---GLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEE---EEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred EeeeeccccccccccCCCEE---EEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 233442 7999995 9999998 999999999999999999875321100
Q ss_pred --------------ccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEe------------------ecCCcc
Q psy4579 221 --------------IDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASV------------------QLPNED 266 (368)
Q Consensus 221 --------------~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~------------------~~~~~~ 266 (368)
..+...+.+|...|.+++|+| ..+.+++.|+.+++|.... .+.+..
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 012345568999999999986 4677777777777774210 000000
Q ss_pred ccccc----------------------------------------------------------------------cccc-
Q psy4579 267 AQFDA----------------------------------------------------------------------SNYD- 275 (368)
Q Consensus 267 ~~~~~----------------------------------------------------------------------~~~d- 275 (368)
.+.. ..+.
T Consensus 380 -~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp 458 (611)
T 1nr0_A 380 -DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 458 (611)
T ss_dssp -CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred -cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence 0000 0000
Q ss_pred --------CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCce
Q psy4579 276 --------TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL 347 (368)
Q Consensus 276 --------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 347 (368)
...+.+.+|+...+........+|...|++++|+|++ .+|++++.|++|++||+.... +.....
T Consensus 459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~-------~~~~~~ 530 (611)
T 1nr0_A 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNF-------ELAHTN 530 (611)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTT-------EESCCC
T ss_pred CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCC-------ceeeee
Confidence 0123345565555443211124799999999999999 688899999999999997411 111111
Q ss_pred eeecccCceeeecceeee
Q psy4579 348 RLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 348 ~~~gh~~~V~~l~w~p~~ 365 (368)
.+.+|...|++++|+|+.
T Consensus 531 ~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 531 SWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp CCCCCSSCEEEEEECTTS
T ss_pred eeeecccceeEEEECCCC
Confidence 234599999999999974
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=242.35 Aligned_cols=261 Identities=15% Similarity=0.227 Sum_probs=196.8
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCC
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNE 94 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 94 (368)
.+...|+|+.+.+.+.-......+.-++.+++|+|++..+++++.|+.+++|+.. .+..... ......+..+.+.+.
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~--~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCTTCCCCEEECTT
T ss_pred CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC--CCCEEEEEeCCCccEEEEEECCC
Confidence 4677899987765432222223355689999999999999999999999777543 3322211 111112334556554
Q ss_pred ccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCccccccee
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 173 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~ 173 (368)
...+.+. +.+|.|++|+... +....+..|...|.+++|+|++ ++||+|+.||.|++||+++++ ....
T Consensus 134 g~~l~~g----~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~-------~~~~ 201 (321)
T 3ow8_A 134 SQYLATG----THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK-------LLHT 201 (321)
T ss_dssp SSEEEEE----CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-------EEEE
T ss_pred CCEEEEE----cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc-------EEEE
Confidence 4433332 3589999999864 4455667788999999999999 999999999999999998764 5678
Q ss_pred eeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCC
Q psy4579 174 FTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDE 251 (368)
Q Consensus 174 ~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~ 251 (368)
+.+|..+|. +++|+|+ +.+|++|+.||+|++||+++. .....+.+|...|.+++|+| ..+.+++.|+
T Consensus 202 ~~~h~~~v~---~l~~spd-~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 202 LEGHAMPIR---SLTFSPD-SQLLVTASDDGYIKIYDVQHA-------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ECCCSSCCC---EEEECTT-SCEEEEECTTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EcccCCcee---EEEEcCC-CCEEEEEcCCCeEEEEECCCc-------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 899999996 9999998 999999999999999999876 45677889999999999986 2344444444
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
. +.+|+..+++....+. +|...|.+++|+|++ .+|++++.||+|++||..
T Consensus 271 ~----------------------------v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 S----------------------------VKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp C----------------------------EEEEETTTTEEEEEEC-CCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred c----------------------------EEEEeCCCCEEEEEEc-CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence 3 4444555566666665 899999999999999 678899999999999973
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-31 Score=255.22 Aligned_cols=302 Identities=19% Similarity=0.289 Sum_probs=227.4
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCcc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDA 96 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (368)
+...++|+.+...+. .+. ...-++.+++|+|+++.+++++.++.+++|+.....-...... ...|..+.+.+...
T Consensus 242 d~~i~~w~~~~~~~~-~~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h--~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 242 DKTVKLWNRNGQLLQ-TLT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDGQ 316 (577)
T ss_dssp TSCEEEECTTSCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC--SSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCCEEE-EEe--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecC--CCCeEEEEECCCCC
Confidence 445678887654332 222 2356789999999999999999999997776432211111111 23466677755544
Q ss_pred ccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec
Q psy4579 97 QFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176 (368)
Q Consensus 97 ~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 176 (368)
.+... +.||.|++|+.++.....+..|...|.+++|+|++ ..|++|+.||.|++||.... ....+.+
T Consensus 317 ~l~t~----~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~--------~~~~~~~ 383 (577)
T 2ymu_A 317 TIASA----SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ--------LLQTLTG 383 (577)
T ss_dssp EEEEE----ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCC--------EEEEEEC
T ss_pred EEEEE----eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCC--------EEEEecC
Confidence 43322 35899999999988888888999999999999999 99999999999999996543 5678889
Q ss_pred cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccc
Q psy4579 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNH 254 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~ 254 (368)
|...|+ +++|+|+ +.+|++++.|+.|++||... ..+..+.+|...|.+++|+| ..+++++.|+.++
T Consensus 384 ~~~~v~---~~~~s~d-g~~l~~~~~d~~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 384 HSSSVR---GVAFSPD-GQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp CSSCEE---EEEECTT-SSCEEEEETTSEEEEECTTC--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCeE---EEEECCC-CCEEEEEeCCCEEEEEeCCC--------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 999996 9999999 89999999999999999643 34677889999999999986 4677777888777
Q ss_pred eEE----------------EEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE
Q psy4579 255 LLI----------------ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 255 ~~~----------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las 318 (368)
+|. ..+.+.++...+.... ..+.+.+|+. +++....+. +|...|++++|+|++ .+||+
T Consensus 452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg-~~l~s 525 (577)
T 2ymu_A 452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDG-QTIAS 525 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEE---TTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTS-SCEEE
T ss_pred EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCC-CEEEE
Confidence 773 1223333333222221 2345677774 566666665 899999999999999 67889
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 319 KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 319 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|+.||+|++||+. ...+..+.+|.+.|++++|+|+.
T Consensus 526 ~~~dg~v~lwd~~-----------~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 526 ASDDKTVKLWNRN-----------GQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EETTSEEEEECTT-----------SCEEEEEECCSSCEEEEEECTTS
T ss_pred EECcCEEEEEeCC-----------CCEEEEEcCCCCCEEEEEEcCCC
Confidence 9999999999964 34566789999999999999974
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=242.99 Aligned_cols=283 Identities=18% Similarity=0.240 Sum_probs=201.1
Q ss_pred hhhhhhhhhhcCcch-heeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCC
Q psy4579 16 INEEYKIWKKNTPFL-YDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPN 93 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 93 (368)
.+...++|+...... ........+.-++.+++|+|++++|++|+.|+.+.+|+........... ......|.++.|.+
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 356788898776532 2222334456789999999999999999999999777654332222222 11223577888866
Q ss_pred CccccccCCcccCCCCcccCCCCCe----eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccc
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNEDA----QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 169 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 169 (368)
.+..+... +.||.|++|+... .....+..|...|.+++|+|++ .+|++|+.|++|++||++.... .
T Consensus 116 ~~~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~-----~ 185 (345)
T 3fm0_A 116 SGNLLATC----SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDW-----V 185 (345)
T ss_dssp TSSEEEEE----ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEE-----E
T ss_pred CCCEEEEE----ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCE-----E
Confidence 55443332 3689999999753 3345667899999999999998 8999999999999999976531 1
Q ss_pred cceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCc--------cccceeeeec-ccccEeEEEEe
Q psy4579 170 AKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENR--------VIDAKTIFTG-HTAVVEDYSIH 240 (368)
Q Consensus 170 ~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~-~~~~v~~v~~~ 240 (368)
+...+.+|...|. +++|+|+ +.+|++|+.|++|++||......... .+.++..+.+ |...|.+++|+
T Consensus 186 ~~~~~~~h~~~v~---~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 186 CCATLEGHESTVW---SLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp EEEEECCCSSCEE---EEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred EEEEecCCCCceE---EEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 3467889999996 9999998 99999999999999999754322111 1123344444 88899999998
Q ss_pred e--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE
Q psy4579 241 R--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 241 ~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las 318 (368)
+ ..+++++.|+.+++|.......... ...........+|...|++++|+|+++.+|||
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~--------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQ--------------------PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTS--------------------CCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcce--------------------eeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 6 4667777777777765431100000 00111222334899999999999998779999
Q ss_pred ecCCCeEEEEECCC
Q psy4579 319 KTPSSDVLVFDYTK 332 (368)
Q Consensus 319 gs~Dg~i~iwd~~~ 332 (368)
||.||+|++|+++.
T Consensus 322 ~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 322 CSDDGEVAFWKYQR 335 (345)
T ss_dssp EETTSCEEEEEECC
T ss_pred cCCCCcEEEEEecC
Confidence 99999999999975
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=237.84 Aligned_cols=277 Identities=17% Similarity=0.203 Sum_probs=195.0
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccc--cCCCC-CcEEEEEEecCCCccccccCCcccCCCCcccCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTH--TSDEQ-NHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
+.-+|.+++|+|+ +|++|+.|+.+++|+........ ..... ....|.++.|.+....+..+ +.||+|++|+
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~----s~D~~v~iw~ 86 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG----SFDSTVSIWA 86 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE----ETTSCEEEEE
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE----eCCCcEEEEE
Confidence 4568999999998 89999999999777654321111 11111 23357888886655433332 3589999998
Q ss_pred CCe--------eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceee
Q psy4579 116 EDA--------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL 187 (368)
Q Consensus 116 ~~~--------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i 187 (368)
... +....+.+|.+.|++++|+|++ ++||+|+.|++|++||+...... .++...+.+|...|. ++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~---~~~~~~~~~h~~~v~---~v 159 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEE---YECISVLQEHSQDVK---HV 159 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCC---CEEEEEECCCSSCEE---EE
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCC---eEEEEEeccCCCceE---EE
Confidence 742 3445677899999999999998 99999999999999999543211 124567889999996 99
Q ss_pred EEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee----cccccCCCCccceEEEEeecC
Q psy4579 188 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL----ILGTHTSDEQNHLLIASVQLP 263 (368)
Q Consensus 188 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~d~~~~~~~~~~~~~ 263 (368)
+|+|+ +.+|++|+.|++|++||++++. ..++..+.+|...|.+++|++. .+++++.|+.+++|.......
T Consensus 160 ~~~p~-~~~l~s~s~D~~i~iW~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 160 IWHPS-EALLASSSYDDTVRIWKDYDDD-----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EECSS-SSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EECCC-CCEEEEEcCCCeEEEEECCCCC-----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99998 8999999999999999987642 1356778899999999999874 577888888888886653211
Q ss_pred CcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCC
Q psy4579 264 NEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC 343 (368)
Q Consensus 264 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~ 343 (368)
..... ......+...|...|.+++|+|++ +|++|+.||+|++||... +..
T Consensus 234 ~~~~~--------------------~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~--------~~~ 283 (330)
T 2hes_X 234 DDQQE--------------------WVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVD--------GEW 283 (330)
T ss_dssp TSCEE--------------------EEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEET--------TEE
T ss_pred cccce--------------------eEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCC--------Cce
Confidence 00000 011122222489999999999765 677999999999999863 111
Q ss_pred CCce-eeecccC-ceeeecceee
Q psy4579 344 HPDL-RLRGHQK-EGLIEGTYNC 364 (368)
Q Consensus 344 ~~~~-~~~gh~~-~V~~l~w~p~ 364 (368)
.... .+.+|.. .|++++|+|.
T Consensus 284 ~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 284 KVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEEESCTTTTSCEEEEEEC--
T ss_pred EEEeccccccccceEEEEEEecC
Confidence 1121 2357887 8999999983
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.98 E-value=9.3e-32 Score=245.52 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=199.8
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCC-CcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQ-NHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 95 (368)
+...++|+..+..+...+..| .-++.+++|+|++++|++|+.|+.+++|+.. .+....... ....|.++.+.+.+
T Consensus 129 Dg~i~vwd~~~~~~~~~l~~h--~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 129 DATIKVWDYETGDFERTLKGH--TDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp SSCEEEEETTTCCCCEEECCC--SSCEEEEEECTTSSEEEEEETTSCCCEEETT--SSCEEECCCCCSSCEEEEEECSSS
T ss_pred CCeEEEEECCCCcEEEEEecc--CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEeCCC
Confidence 456788988877666555443 4579999999999999999999999776543 333322222 22347788886554
Q ss_pred cccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
..+..+ +.||.|++|+... .....+.+|...|.++.|+|++ .+|++|+.||+|++||+.++. ....+
T Consensus 205 ~~l~s~----s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~-------~~~~~ 272 (410)
T 1vyh_C 205 DHIVSA----SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE-------CKAEL 272 (410)
T ss_dssp SEEEEE----ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC-------EEEEE
T ss_pred CEEEEE----eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc-------eeeEe
Confidence 443332 3689999999864 5566778899999999999998 999999999999999998764 45778
Q ss_pred eccccceecceeeEEeCCC-------------------CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEe
Q psy4579 175 TGHTAVVEVRYGLSWNPSL-------------------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 235 (368)
Q Consensus 175 ~~h~~~v~~~~~i~~~p~~-------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (368)
.+|...|. +++|+|+. +.+|++|+.|++|++||++++ .++..+.+|...|.
T Consensus 273 ~~h~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 273 REHRHVVE---CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-------MCLMTLVGHDNWVR 342 (410)
T ss_dssp CCCSSCEE---EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEE
T ss_pred cCCCceEE---EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-------ceEEEEECCCCcEE
Confidence 89999996 99999962 468999999999999999987 46778889999999
Q ss_pred EEEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCC
Q psy4579 236 DYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP 313 (368)
Q Consensus 236 ~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 313 (368)
+++|++ ..+.+++.|+.+++ |+..+++....+. +|...|++++|+|++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~v----------------------------wd~~~~~~~~~~~-~h~~~v~~l~~~~~~- 392 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRV----------------------------WDYKNKRCMKTLN-AHEHFVTSLDFHKTA- 392 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEE----------------------------ECCTTSCCCEEEE-CCSSCEEEEEECSSS-
T ss_pred EEEEcCCCCEEEEEeCCCeEEE----------------------------EECCCCceEEEEc-CCCCcEEEEEEcCCC-
Confidence 999986 34445555544444 3344455555555 899999999999999
Q ss_pred cEEEEecCCCeEEEEECC
Q psy4579 314 CVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 314 ~~lasgs~Dg~i~iwd~~ 331 (368)
.+|+|||.||+|++|+++
T Consensus 393 ~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEETTSEEEEEC--
T ss_pred CEEEEEeCCCcEEEEeCC
Confidence 578899999999999974
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=3.3e-31 Score=240.55 Aligned_cols=279 Identities=17% Similarity=0.190 Sum_probs=196.8
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC---C----------------CCcEEEEEEecCCCccccc
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD---E----------------QNHLLIASVQLPNEDAQFD 99 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~i~~~~~~~~~~~~~ 99 (368)
+..++.+++|+|||++|++|+ ++.+.+|. ...|..... . .....|.++.|.+.+..+.
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~--~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYR--VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEE--TTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEE--ecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 566899999999999999987 56665554 333322111 0 1122477888866554443
Q ss_pred cCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc
Q psy4579 100 ASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 178 (368)
Q Consensus 100 ~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~ 178 (368)
.+ +.||.|++|+... +....+.+|...|++++|+|++ .+|++|+.|++|++||++++. ....+. +.
T Consensus 140 s~----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~-------~~~~~~-~~ 206 (393)
T 1erj_A 140 TG----AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ-------CSLTLS-IE 206 (393)
T ss_dssp EE----ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE-------EEEEEE-CS
T ss_pred EE----cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe-------eEEEEE-cC
Confidence 32 3589999999875 5566778899999999999999 899999999999999998764 234444 45
Q ss_pred cceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceE
Q psy4579 179 AVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLL 256 (368)
Q Consensus 179 ~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~ 256 (368)
..+. +++|+|.++.+|++|+.||.|++||++++.....+........+|...|.+++|++ ..+.+++.|+.+++|
T Consensus 207 ~~v~---~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 207 DGVT---TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp SCEE---EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcE---EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 5564 99999954899999999999999999886321111011112257999999999986 466777778777777
Q ss_pred EEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCC
Q psy4579 257 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK 336 (368)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~ 336 (368)
......... . ......+.....+. +|...|.+++|+|++ .+|++|+.|++|++||++.
T Consensus 284 d~~~~~~~~----~------------~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~---- 341 (393)
T 1erj_A 284 NLQNANNKS----D------------SKTPNSGTCEVTYI-GHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS---- 341 (393)
T ss_dssp EC-------------------------------CEEEEEE-CCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT----
T ss_pred ECCCCCCcc----c------------ccCCCCCcceEEEe-cccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC----
Confidence 543210000 0 00001123334444 899999999999999 6788999999999999975
Q ss_pred CCCCCCCCCceeeecccCceeeecceee
Q psy4579 337 PDPNGECHPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 337 ~~~~~~~~~~~~~~gh~~~V~~l~w~p~ 364 (368)
..++..+.+|.+.|.+++|+|.
T Consensus 342 ------~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 342 ------GNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ------CCEEEEEECCSSCEEEEEECSS
T ss_pred ------CeEEEEECCCCCCEEEEEecCC
Confidence 4556788999999999999873
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=8.6e-32 Score=239.63 Aligned_cols=258 Identities=16% Similarity=0.204 Sum_probs=190.0
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccc--cCC-CCCcEEEEEEecC
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTH--TSD-EQNHLLIASVQLP 92 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~i~~~~~~ 92 (368)
.+...++|+..+......+.. ...++.+++|+|++++|++|+.|+.+.+|+.....+.. ... ......+.++.+.
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE
T ss_pred CCCcEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC
Confidence 355678888776655544433 34578999999999999999999999777654321110 001 1112235566665
Q ss_pred CCccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccc
Q psy4579 93 NEDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK 171 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~ 171 (368)
+.+. +.+ .+.||.|++|+... +....+.+|.+.|.+++|+|++ .+|++|+.||+|++||++++. +.
T Consensus 153 ~~~~-l~s----~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~-------~~ 219 (340)
T 1got_B 153 DDNQ-IVT----SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM-------CR 219 (340)
T ss_dssp ETTE-EEE----EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS-------EE
T ss_pred CCCc-EEE----EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCe-------eE
Confidence 4443 222 23599999999864 5566777899999999999998 899999999999999998764 56
Q ss_pred eeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeee--cccccEeEEEEee--eccccc
Q psy4579 172 TIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEDYSIHR--LILGTH 247 (368)
Q Consensus 172 ~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~~--~~~~~~ 247 (368)
..+.+|...|. +++|+|+ +.+|++|+.||+|++||++... .+..+. .+...|.+++|+| ..+.++
T Consensus 220 ~~~~~h~~~v~---~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 220 QTFTGHESDIN---AICFFPN-GNAFATGSDDATCRLFDLRADQ-------ELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EEECCCSSCEE---EEEECTT-SSEEEEEETTSCEEEEETTTTE-------EEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCcCCEE---EEEEcCC-CCEEEEEcCCCcEEEEECCCCc-------EEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 78899999996 9999998 9999999999999999998762 233333 2335789999986 344444
Q ss_pred CCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEE
Q psy4579 248 TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLV 327 (368)
Q Consensus 248 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~i 327 (368)
+.|+.++ +|+..++.....+. +|.+.|.+++|+|++ .+|||||.||+|+|
T Consensus 289 ~~d~~i~----------------------------vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg-~~l~s~s~D~~i~i 338 (340)
T 1got_B 289 YDDFNCN----------------------------VWDALKADRAGVLA-GHDNRVSCLGVTDDG-MAVATGSWDSFLKI 338 (340)
T ss_dssp ETTSEEE----------------------------EEETTTCCEEEEEE-CCSSCEEEEEECTTS-SCEEEEETTSCEEE
T ss_pred CCCCeEE----------------------------EEEcccCcEeeEee-cCCCcEEEEEEcCCC-CEEEEEcCCccEEe
Confidence 4444333 34444455555555 899999999999999 68889999999999
Q ss_pred EE
Q psy4579 328 FD 329 (368)
Q Consensus 328 wd 329 (368)
||
T Consensus 339 Wd 340 (340)
T 1got_B 339 WN 340 (340)
T ss_dssp EC
T ss_pred cC
Confidence 97
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.4e-30 Score=228.92 Aligned_cols=265 Identities=13% Similarity=0.154 Sum_probs=196.3
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
.+.-++.+++|+|++++|++++.|+.+++|+.. .+..... ......|.++.+.+.+..+.+. +.||.|++|+.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~d~~i~vwd~ 94 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSDSNLLVSA----SDDKTLKIWDV 94 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC--CcccchhhccCCCceEEEEEcCCCCEEEEE----CCCCEEEEEEC
Confidence 345689999999999999999999999776543 2322222 1222347788886655444333 35899999998
Q ss_pred Ce-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCC
Q psy4579 117 DA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG 195 (368)
Q Consensus 117 ~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~ 195 (368)
.. +....+.+|...|.+++|+|++ ++|++|+.||.|++||++++. ....+..|..++. +++|+|+ +.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~---~~~~~~~-~~ 162 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK-------CLKTLPAHSDPVS---AVHFNRD-GS 162 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEE---EEEECTT-SS
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCE-------EEEEecCCCCcEE---EEEEcCC-CC
Confidence 64 5566677899999999999998 999999999999999998764 4677889999996 9999998 89
Q ss_pred eEEEeeCCCcEEEEECCCCCCCCccccceeee-ecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccc
Q psy4579 196 YLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDAS 272 (368)
Q Consensus 196 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
+|++|+.||.|++||++++. .+..+ ..+...+..++|++ ..+.+++.++
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------------- 214 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQ-------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------------- 214 (312)
T ss_dssp EEEEEETTSCEEEEETTTCC-------EEEEECCSSCCCEEEEEECTTSSEEEEEETTT---------------------
T ss_pred EEEEEeCCCcEEEEECCCCc-------eeeEEeccCCCceEEEEECCCCCEEEEEcCCC---------------------
Confidence 99999999999999998863 23333 34667788899976 2233333332
Q ss_pred cccCCCCCcccccCCCCceeeeeecCccccee--EEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeee
Q psy4579 273 NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVN--RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR 350 (368)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 350 (368)
.+.+|+..+++....+. +|...+. ...+++.+..+|++|+.||.|++||++. ...+..+.
T Consensus 215 -------~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~----------~~~~~~~~ 276 (312)
T 4ery_A 215 -------TLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----------KEIVQKLQ 276 (312)
T ss_dssp -------EEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT----------CCEEEEEC
T ss_pred -------eEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC----------chhhhhhh
Confidence 34444555555555554 6665433 3455544447888999999999999975 34556788
Q ss_pred cccCceeeecceeeee
Q psy4579 351 GHQKEGLIEGTYNCYL 366 (368)
Q Consensus 351 gh~~~V~~l~w~p~~~ 366 (368)
+|.+.|.+++|+|...
T Consensus 277 ~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 277 GHTDVVISTACHPTEN 292 (312)
T ss_dssp CCSSCEEEEEECSSSS
T ss_pred ccCCcEEEEeecCcCC
Confidence 9999999999999753
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=2.1e-30 Score=246.74 Aligned_cols=302 Identities=19% Similarity=0.293 Sum_probs=226.1
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCcc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDA 96 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (368)
+...++|+.+...+. .+. ...-++.+++|+|+++.|++++.|+.+++|+.....-... ......|..+.+.++..
T Consensus 201 d~~v~~w~~~~~~~~-~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~--~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 201 DKTVKLWNRNGQLLQ-TLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp TSEEEEECTTSCEEE-EEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE--CCCSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCcEEE-EEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEE--ecCCCCEEEEEEcCCCC
Confidence 345677876543322 222 2356789999999999999999999998776432211111 11223466777755544
Q ss_pred ccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec
Q psy4579 97 QFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 176 (368)
Q Consensus 97 ~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 176 (368)
.+... +.|+.|++|+.+++....+.+|...|++++|+|++ ..|++++.||+|++||.... ....+.+
T Consensus 276 ~l~~~----~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~--------~~~~~~~ 342 (577)
T 2ymu_A 276 TIASA----SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ--------HLQTLTG 342 (577)
T ss_dssp EEEEE----ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC--------EEEEECC
T ss_pred EEEEE----eCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCC--------eeEEEeC
Confidence 33322 35899999999988888888999999999999998 99999999999999998754 4567889
Q ss_pred cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccc
Q psy4579 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNH 254 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~ 254 (368)
|...+. +++|+|+ +.+|++|+.||.|++||... ..+..+.+|...|.+++|++ ..+++++.|+.++
T Consensus 343 ~~~~v~---~~~~s~~-g~~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 343 HSSSVW---GVAFSPD-GQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp CSSCEE---EEEECTT-SSEEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CCCCEE---EEEECCC-CCEEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 999995 9999999 99999999999999999643 34677888999999999986 4667777777777
Q ss_pred eEE----------------EEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE
Q psy4579 255 LLI----------------ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 255 ~~~----------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las 318 (368)
+|. ..+.+.+++..+.... ..+.+.+|+. +++....+. +|...|.+++|+|++ .+||+
T Consensus 411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~spd~-~~las 484 (577)
T 2ymu_A 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS---DDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDG-QTIAS 484 (577)
T ss_dssp EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTS-CEEEE
T ss_pred EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc---CCCEEEEEEC-CCCEEEEEc-CCCCCEEEEEEcCCC-CEEEE
Confidence 762 2223333333332222 2345667774 455555555 899999999999999 68889
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 319 KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 319 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++.|++|++||.. ...+..+.+|.+.|++++|+|+.
T Consensus 485 ~~~d~~i~iw~~~-----------~~~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-----------GQLLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp EETTSEEEEEETT-----------SCEEEEEECCSSCEEEEEECTTS
T ss_pred EeCCCEEEEEcCC-----------CCEEEEEeCCCCCEEEEEEcCCC
Confidence 9999999999964 34566789999999999999974
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=7.8e-31 Score=228.97 Aligned_cols=253 Identities=15% Similarity=0.155 Sum_probs=185.3
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCC-CccccccCCcccCCCCcccCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPN-EDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+.-+|.+++|+|++++|++|+.|+.+++|+.....+..... ......|.++.|.+ ......+++ +.||+|++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~---s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE---ETTTEEEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE---cCCCEEEEEE
Confidence 356689999999999999999999999777654222222112 11223577888743 223333333 4699999999
Q ss_pred CCee---eeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 116 EDAQ---FDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 116 ~~~~---~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
.... ....+..|...|.+++|+|+ + .+|++|+.||+|++||+++.... ....+.+|...|. +++|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~-----~~~~~~~h~~~v~---~~~~~ 154 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTT-----SPIIIDAHAIGVN---SASWA 154 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCB-----CCEEEECCSSCEE---EEEEC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCce-----eeeeeecccCccc---eEeec
Confidence 8653 34456679999999999997 6 89999999999999999865321 2356789999996 99999
Q ss_pred CCC------------CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee-----ecccccCCCCcc
Q psy4579 191 PSL------------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR-----LILGTHTSDEQN 253 (368)
Q Consensus 191 p~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-----~~~~~~~~d~~~ 253 (368)
|+. +.+|++|+.|++|++||++++... ......+.+|...|.+++|+| ..+++++.|+.+
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~---~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT---YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTE---EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce---EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 962 468999999999999999875321 123567889999999999987 357788888777
Q ss_pred ceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeee--ecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 254 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI--KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
++|..... .+...... ...|...|.+++|+|++ .+||+++.||+|++|+..
T Consensus 232 ~iWd~~~~--------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 232 IIWTQDNE--------------------------QGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEESST--------------------------TSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEEC
T ss_pred EEEEeCCC--------------------------CCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEEC
Confidence 77754210 00000111 12678899999999999 678899999999999986
Q ss_pred C
Q psy4579 332 K 332 (368)
Q Consensus 332 ~ 332 (368)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 3
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.8e-30 Score=232.66 Aligned_cols=244 Identities=12% Similarity=0.154 Sum_probs=177.4
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC---CCCcEEEEEEecCCCccccccCCcccCCCCcccCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD---EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
..-+|.+++|+|+++.++ ++.||.|++|+........... ......|.++.+.+.+..+... +.||.|++|+
T Consensus 93 ~~~~V~~~~~s~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg----s~dg~v~iwd 167 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG----GKDFSVKVWD 167 (357)
T ss_dssp CSSCEEEEEEETTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE----ETTSCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE----eCCCeEEEEE
Confidence 345689999999987664 6778998776543322111111 1223457888886655444332 3589999999
Q ss_pred CCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCC
Q psy4579 116 EDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 116 ~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~ 194 (368)
... +....+..|...|++++|+|+++.++++++.||+|++||+++++.. ....+..|...+. +++|+|+++
T Consensus 168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-----~~~~~~~~~~~v~---~v~~sp~~~ 239 (357)
T 4g56_B 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA-----TRIDFCASDTIPT---SVTWHPEKD 239 (357)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-----CBCCCTTCCSCEE---EEEECTTST
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee-----eeeeecccccccc---chhhhhccc
Confidence 864 5566778899999999999998668999999999999999876532 1123445666775 999999867
Q ss_pred CeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEEEeecCCccccccc
Q psy4579 195 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDA 271 (368)
Q Consensus 195 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 271 (368)
.+|++|+.|+.|++||++++ .+...+.+|...|++++|+| .++++++.|+.+++
T Consensus 240 ~~la~g~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i---------------- 296 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNP-------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV---------------- 296 (357)
T ss_dssp TEEEEEESSSCEEEEESSCG-------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE----------------
T ss_pred ceEEEeecccceeEEECCCC-------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE----------------
Confidence 89999999999999999886 45678889999999999985 24455554444444
Q ss_pred ccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 272 SNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|+..++++.. .. +|.+.|++++|+|....+|+|||.||+|++||+..
T Consensus 297 ------------wd~~~~~~~~-~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 297 ------------LDADFSEVFR-DL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ------------ECTTSCEEEE-EC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ------------EECCCCcEeE-EC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 4444454433 33 89999999999995437899999999999999975
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-30 Score=236.62 Aligned_cols=272 Identities=12% Similarity=0.129 Sum_probs=198.5
Q ss_pred CceeeEecCCcc-cccCC----------CCccccccCcceeeecc---ccCCCCCcEEEEEEecCCCccccccCCcccCC
Q psy4579 42 PSLTAQWLPDVT-SVQLP----------NEDAQFDASNYDTDKGT---HTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 107 (368)
Q Consensus 42 ~~~~~~~~p~~~-~l~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 107 (368)
++.+++|+|+++ +++++ +.|+.+++|+. ..+. ..........|.++.|.+....+..+ +.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~ 87 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSL--LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA----LD 87 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEES--SSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE----ES
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEc--cCCCCCcEEEEEecCCceEEEEECCCCCeEEEE----cc
Confidence 678899999997 88888 88888866654 4333 12222333458888886655444332 35
Q ss_pred CCcccCCCCCe-----eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcc--cccceeeeccccc
Q psy4579 108 GGNVQLPNEDA-----QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV--IDAKTIFTGHTAV 180 (368)
Q Consensus 108 ~g~i~i~~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~h~~~ 180 (368)
||.|++|+... .....+.+|...|++++|+|++..+|++++.||.|++||+.+....... ......+.+|...
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 89999999876 4667778899999999999983389999999999999999876521100 0012334678888
Q ss_pred eecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc------cccEeEEEEeee---cccccCCCC
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH------TAVVEDYSIHRL---ILGTHTSDE 251 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~~~---~~~~~~~d~ 251 (368)
+. +++|+|+++.+|++++.||.|++||++++ .+...+..+ ...|.+++|+|. ++.+++.++
T Consensus 168 v~---~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 168 VI---SLAWNQSLAHVFASAGSSNFASIWDLKAK-------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CC---EEEECSSCTTEEEEESSSSCEEEEETTTT-------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred ee---EEEeCCCCCcEEEEEcCCCCEEEEECCCC-------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 86 99999986789999999999999999886 334555544 788999999862 233333222
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeec-CcccceeEEEEeC-CCCcEEEEecCCCeEEEEE
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI-NHEGEVNRARYMP-QNPCVIATKTPSSDVLVFD 329 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p-~~~~~lasgs~Dg~i~iwd 329 (368)
..+.+.+|+..++........ +|...|.+++|+| ++ .+|++++.||+|++||
T Consensus 238 -------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 238 -------------------------NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWN 291 (416)
T ss_dssp -------------------------SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEEC
T ss_pred -------------------------CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEee
Confidence 111344455555433333333 7999999999999 66 7888999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 330 YTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++. ..++..+.+|...|++++|+|..
T Consensus 292 ~~~----------~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 292 PES----------AEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp SSS----------CCEEEEEECSSSCCCCEEECTTC
T ss_pred CCC----------CccceeecCCCCceEEEEECCCC
Confidence 975 45566788999999999999964
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.8e-30 Score=234.60 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=186.3
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeec---cc--cCCC-CCcEEEEEE
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKG---TH--TSDE-QNHLLIASV 89 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~---~~--~~~~-~~~~~i~~~ 89 (368)
.+...++|+..+......+..+ .-++.+++|+|++++|++|+.|+.+.+|+...... .. .... .....+.++
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~h--~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~ 163 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKLH--CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEECC--CTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC
T ss_pred CCCeEEEEECCCCccceEEecC--CCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE
Confidence 3567889988776655444433 34688999999999999999999997776543211 00 0001 111234445
Q ss_pred ecCCCccccccCCcccCCCCcccCCCCCeee-eecc-----ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 90 QLPNEDAQFDASNYDTDKGGNVQLPNEDAQF-DASN-----YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-~~~~-----~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
.+.+......++ .+.||+|++||..... ...+ .+|...|.+++|+|.+.++|++|+.||+|++||++....
T Consensus 164 ~~~~~~~~~l~s---~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 164 QYVPDQETRLIT---GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp BCCSSSSSCEEE---ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEecCCCCEEEE---ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 553332222222 2469999999987532 2222 579999999999884348999999999999999975432
Q ss_pred CCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc-------cccEeE
Q psy4579 164 ENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-------TAVVED 236 (368)
Q Consensus 164 ~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~v~~ 236 (368)
+...+.+|.+.|. +++|+|+ +.+|++|+.||+|++||++++. ++..+..+ ...|.+
T Consensus 241 ------~~~~~~~h~~~v~---~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 241 ------AVRTYHGHEGDIN---SVKFFPD-GQRFGTGSDDGTCRLFDMRTGH-------QLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp ------CCEEECCCSSCCC---EEEECTT-SSEEEEECSSSCEEEEETTTTE-------EEEEECCCCSSSCCSSCSCSE
T ss_pred ------ceEEECCcCCCeE---EEEEecC-CCeEEEEcCCCeEEEEECCCCc-------EEEEecccccccccccCceEE
Confidence 5678899999996 9999998 9999999999999999999873 33333322 234788
Q ss_pred EEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeee---ecCcccceeEEEEeCC
Q psy4579 237 YSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI---KINHEGEVNRARYMPQ 311 (368)
Q Consensus 237 v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~p~ 311 (368)
++|++ ..+.+++.++.+++ |+...++....+ ..+|.+.|++++|+|+
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~v----------------------------wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYV----------------------------WDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEE----------------------------EETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred EEECCCCCEEEEEECCCCEEE----------------------------EECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 88875 34444444444444 333344444333 2379999999999999
Q ss_pred CCcEEEEecCCCeEEEEECCC
Q psy4579 312 NPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 312 ~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+ .+|+|||.||+|++|++..
T Consensus 356 g-~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 356 G-SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp S-SEEEEECTTSCEEEEECCS
T ss_pred C-CEEEEeeCCCCEEEEecCC
Confidence 9 6888999999999999974
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=237.17 Aligned_cols=270 Identities=11% Similarity=0.201 Sum_probs=197.7
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeee-c-cccCC-CCCcEEEEEEecCC
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDK-G-THTSD-EQNHLLIASVQLPN 93 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~i~~~~~~~ 93 (368)
+...++|+.........+.......++.+++|+|++++|++++.|+.+.+|+..... + ..... ......|.++.+.+
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence 446788988876543334444467789999999999999999999999777665410 1 11111 11223467777765
Q ss_pred CccccccCCcccCCCCcccCCCCCeee-------e---eccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNEDAQF-------D---ASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~~~~~-------~---~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
.+....+++ +.||.|++|+..... . .....|...|.+++|+|++..+|++++.||.|++||++++.
T Consensus 124 ~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~- 199 (416)
T 2pm9_A 124 KQDNVLASG---GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK- 199 (416)
T ss_dssp SSTTBEEEE---CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-
T ss_pred CCCCEEEEE---cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-
Confidence 523333332 358999999986532 1 22357999999999999954899999999999999998764
Q ss_pred CCcccccceeeecc------ccceecceeeEEeCCCCCeEEEeeCCC---cEEEEECCCCCCCCccccceeeee-ccccc
Q psy4579 164 ENRVIDAKTIFTGH------TAVVEVRYGLSWNPSLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFT-GHTAV 233 (368)
Q Consensus 164 ~~~~~~~~~~~~~h------~~~v~~~~~i~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~ 233 (368)
....+..| ...+. +++|+|++..++++++.|+ .|++||+++.. .+...+. +|...
T Consensus 200 ------~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~------~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 200 ------EVIHLSYTSPNSGIKQQLS---VVEWHPKNSTRVATATGSDNDPSILIWDLRNAN------TPLQTLNQGHQKG 264 (416)
T ss_dssp ------EEEEECCCCCSSCCCCCEE---EEEECSSCTTEEEEEECCSSSCCCCEEETTSTT------SCSBCCCSCCSSC
T ss_pred ------cceEEeccccccccCCceE---EEEECCCCCCEEEEEECCCCCceEEEEeCCCCC------CCcEEeecCccCc
Confidence 34555555 67785 9999998557999999999 99999998863 2345666 89999
Q ss_pred EeEEEEee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 234 VEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 234 v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
|.+++|+| .++.+++.|+ .+.+|+..+++....+. +|...|.+++|+|
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg----------------------------~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDN----------------------------TVLLWNPESAEQLSQFP-ARGNWCFKTKFAP 315 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSS----------------------------EEEEECSSSCCEEEEEE-CSSSCCCCEEECT
T ss_pred eeEEEeCCCCCCeEEEEeCCC----------------------------CEEEeeCCCCccceeec-CCCCceEEEEECC
Confidence 99999975 2344443333 34445555666666665 8999999999999
Q ss_pred CCCcEEEEecCCCeEEEEECCCCC
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTKHP 334 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~~~ 334 (368)
+++.+|++++.||.|++||+....
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCCEEEEEecCCcEEEEEccCCC
Confidence 987789999999999999998654
No 28
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.2e-30 Score=240.06 Aligned_cols=272 Identities=13% Similarity=0.134 Sum_probs=195.6
Q ss_pred ccCceeeEecC-CcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 40 EWPSLTAQWLP-DVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 40 ~~~~~~~~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+-.|.|++|+| +.+.||+|+.||.|.+|++.......... ......|.++.|.+.+....+++ +.||+|++||.+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~---s~D~~v~iwd~~ 195 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS---SMEGTTRLQDFK 195 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE---CSSSCEEEEETT
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE---eCCCEEEEeecc
Confidence 44599999999 56789999999999888765443322222 22334578888865433333222 468999999998
Q ss_pred eeeeeccc---cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCC
Q psy4579 118 AQFDASNY---DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 118 ~~~~~~~~---~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~ 194 (368)
+.....+. .+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+.+|...|. +++|+|++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~---~v~~~p~~~ 263 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVT---HVALNPCCD 263 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEE---EEEECTTCS
T ss_pred CCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc--------eeEEEecccceEE---eeeecCCCc
Confidence 75544433 344568899999998 99999999999999999754 4567889999996 999999856
Q ss_pred CeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEee-----------
Q psy4579 195 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQ----------- 261 (368)
Q Consensus 195 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~----------- 261 (368)
.+|++|+.|++|++||+++..... ......+|...|++++|+| ..+.+++.|+.+++|.....
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~----~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKA----SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSS----CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred eEEEEecCcceeeEEecccccccc----eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 689999999999999998864322 1233457999999999986 57788888888888853210
Q ss_pred ------------cCCccccccccccc---------CCCCCcccccCCCCceeeeeecCcccceeEE-EEeCCCCcEEEEe
Q psy4579 262 ------------LPNEDAQFDASNYD---------TDKGDFGGFGSVSGKIEIEIKINHEGEVNRA-RYMPQNPCVIATK 319 (368)
Q Consensus 262 ------------~~~~~~~~~~~~~d---------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~~p~~~~~lasg 319 (368)
+.+....+.+...+ ...+.+.+|+..+++....+..+|...|.++ +|+|++ .+||+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg 418 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASA 418 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEE
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEE
Confidence 00001111111111 0112466788888888887776899999887 699999 678787
Q ss_pred cCCCeEEEEECCC
Q psy4579 320 TPSSDVLVFDYTK 332 (368)
Q Consensus 320 s~Dg~i~iwd~~~ 332 (368)
+ |++|+|||++.
T Consensus 419 ~-d~~i~iW~~~~ 430 (435)
T 4e54_B 419 M-GYHILIWSQQE 430 (435)
T ss_dssp C-SSEEEECCCC-
T ss_pred c-CCcEEEEECCc
Confidence 5 88999999975
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=234.32 Aligned_cols=304 Identities=11% Similarity=0.074 Sum_probs=219.0
Q ss_pred eeecccccccCceeeEecCCcc-cccCCCCccccccCccee--eecc------------ccCCCC-----CcEEEEEEec
Q psy4579 32 DLVMTHALEWPSLTAQWLPDVT-SVQLPNEDAQFDASNYDT--DKGT------------HTSDEQ-----NHLLIASVQL 91 (368)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~~~-~l~~~~~~~~~~~~~~~~--~~~~------------~~~~~~-----~~~~i~~~~~ 91 (368)
..+..+...-++.+++|+|+++ +|++++.|+.+.+|+... ..+. +..... ....|.++.|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3344455567899999999999 999999999997765510 2222 111110 2236888888
Q ss_pred CCCccccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccc
Q psy4579 92 PNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~ 171 (368)
.+.+..+... +.+|.|++|+.++.....+..|...|.+++|+|++ .+|++++.||.|++||+.++. ..
T Consensus 117 s~~~~~l~~~----~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-------~~ 184 (425)
T 1r5m_A 117 SHDGNSIVTG----VENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGT-------VM 184 (425)
T ss_dssp CTTSSEEEEE----ETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTE-------EE
T ss_pred cCCCCEEEEE----eCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCc-------EE
Confidence 6655444333 35899999998888888888999999999999998 899999999999999998764 44
Q ss_pred eeeeccccc---------------eecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeE
Q psy4579 172 TIFTGHTAV---------------VEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVED 236 (368)
Q Consensus 172 ~~~~~h~~~---------------v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (368)
..+..+... +. +++|+|+ ..+++++.||.|++||++++ .+...+.+|...|.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~g~i~~~d~~~~-------~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGV---DVEWVDD--DKFVIPGPKGAIFVYQITEK-------TPTGKLIGHHGPISV 252 (425)
T ss_dssp EEECCC---------------CCCBS---CCEEEET--TEEEEECGGGCEEEEETTCS-------SCSEEECCCSSCEEE
T ss_pred EEeeccccCccceeeccccCCcceee---EEEEcCC--CEEEEEcCCCeEEEEEcCCC-------ceeeeeccCCCceEE
Confidence 556666555 64 9999985 66899999999999999886 345677789999999
Q ss_pred EEEee--ecccccCCCCccceEEE-----------------EeecCCcccccccccccCCCCCcccccCCCCceeeeeec
Q psy4579 237 YSIHR--LILGTHTSDEQNHLLIA-----------------SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI 297 (368)
Q Consensus 237 v~~~~--~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 297 (368)
++|++ ..+.+++.++.+++|.. .+.+.++. .+... ...+.+.+|+..+++....+.
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~---~~d~~i~i~d~~~~~~~~~~~- 327 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC---SMDGSVRLWSLKQNTLLALSI- 327 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE---ETTSEEEEEETTTTEEEEEEE-
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE---eCCCcEEEEECCCCcEeEecc-
Confidence 99986 35667777777777632 22222222 22211 234568889998888777776
Q ss_pred CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCC----------CCCCCCceeeecccC--ceeeecceeee
Q psy4579 298 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP----------NGECHPDLRLRGHQK--EGLIEGTYNCY 365 (368)
Q Consensus 298 ~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~gh~~--~V~~l~w~p~~ 365 (368)
.|...|.+++|+|++ .+|++|+.||.|++||++........ .....++..+.+|.. .|++++|+|+.
T Consensus 328 ~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 328 VDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp CTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred cCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 799999999999999 68889999999999999753210000 000114567788977 99999999874
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=7.3e-30 Score=223.57 Aligned_cols=220 Identities=18% Similarity=0.216 Sum_probs=177.3
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
.|.++.|.+....+.++ +.||.|++|+... .....+..|..+|.+++|+|++ ++|++|+.|++|++||+.++.
T Consensus 15 ~V~~~~fsp~~~~l~s~----~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~- 88 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTT----LYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE- 88 (304)
T ss_dssp CEEEEEECSSSSEEEEE----ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC-
T ss_pred ceEEEEECCCCCEEEEE----cCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCc-
Confidence 47788886665544433 3589999999875 5566677899999999999998 999999999999999998874
Q ss_pred CCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--
Q psy4579 164 ENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR-- 241 (368)
Q Consensus 164 ~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-- 241 (368)
....+.+|...|. +++|+|+ +.+|++|+.||+|++||++++. .....+.+|...|.+++|+|
T Consensus 89 ------~~~~~~~h~~~v~---~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 89 ------KVVDFEAHPDYIR---SIAVHPT-KPYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp ------EEEEEECCSSCEE---EEEECSS-SSEEEEEETTSCEEEEEGGGTT------EEEEEECCCCSCEEEEEECTTC
T ss_pred ------EEEEEeCCCCcEE---EEEEcCC-CCEEEEECCCCeEEEEECCCCc------chhhhhcccCCcEEEEEECCCC
Confidence 5678899999996 9999999 8999999999999999998753 23467889999999999986
Q ss_pred -ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC--CCCcEEEE
Q psy4579 242 -LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP--QNPCVIAT 318 (368)
Q Consensus 242 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p--~~~~~las 318 (368)
..+++++.|+.+++|. ...+.....+..+|...|..+.|+| ++ .+|++
T Consensus 153 ~~~l~sgs~D~~v~iwd----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s 203 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWS----------------------------LGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT 203 (304)
T ss_dssp TTEEEEEETTSEEEEEE----------------------------TTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEE
T ss_pred CCEEEEEeCCCeEEEEE----------------------------CCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEE
Confidence 3566666666665543 2223333444446778999999988 44 58889
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 319 KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 319 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|+.|++|++||++. ...+..+.+|...|.+++|+|..
T Consensus 204 ~s~D~~i~iWd~~~----------~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 204 ASDDLTIKIWDYQT----------KSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp EETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECSSS
T ss_pred EcCCCeEEEEeCCC----------CccceeeCCCCCCEEEEEECCCC
Confidence 99999999999975 34566789999999999999975
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=6.2e-30 Score=225.58 Aligned_cols=266 Identities=12% Similarity=0.129 Sum_probs=193.5
Q ss_pred cccCceeeEecCCc-ccccCCCCccccccCcceeee---ccccCCC-CCcEEEEEEecCCCccccccCCcccCCCCcccC
Q psy4579 39 LEWPSLTAQWLPDV-TSVQLPNEDAQFDASNYDTDK---GTHTSDE-QNHLLIASVQLPNEDAQFDASNYDTDKGGNVQL 113 (368)
Q Consensus 39 ~~~~~~~~~~~p~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i 113 (368)
+.-+|.+++|+|++ +.|++|+.|+.+++|+..... +...... .....|.++.+.+++..+..+ +.||+|++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~----s~D~~v~~ 91 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA----SWDKTLRL 91 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEEE
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE----eCCCEEEE
Confidence 45689999999975 789999999999777654221 1111111 122346777776655443332 35899999
Q ss_pred CCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC
Q psy4579 114 PNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 114 ~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~ 192 (368)
|+... +....+.+|...|.+++|+|++ .+|++|+.|++|++||++.. ....+.+|...+. ++.|+|.
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~---~~~~~~~ 159 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVS---QVRVVPN 159 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEE---EEEECCC
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEE---EEEEccC
Confidence 99864 5566778999999999999998 99999999999999999753 5678889999996 9999985
Q ss_pred -----CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEE-------
Q psy4579 193 -----LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIA------- 258 (368)
Q Consensus 193 -----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~------- 258 (368)
++..+++++.|+.|++||+++. .....+.+|...|++++|+| ..+++++.|+.+++|..
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~ 232 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQF-------QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTT-------EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcc-------hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 1448999999999999999876 44667889999999999986 57888888888888842
Q ss_pred ---------EeecCCcccccccccccCCCCCcccccCCCCceeeeee-------cCcccceeEEEEeCCCCcEEEEecCC
Q psy4579 259 ---------SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK-------INHEGEVNRARYMPQNPCVIATKTPS 322 (368)
Q Consensus 259 ---------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~~~~~p~~~~~lasgs~D 322 (368)
.+.+.++...+... . ...+.+|+...+.....+. ..|...+.+++|+|+| .+|++|+.|
T Consensus 233 ~~~~~~~v~~~~~sp~~~~la~~-~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~D 307 (319)
T 3frx_A 233 TLSAQDEVFSLAFSPNRYWLAAA-T---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTD 307 (319)
T ss_dssp EEECCSCEEEEEECSSSSEEEEE-E---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETT
T ss_pred EecCCCcEEEEEEcCCCCEEEEE-c---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecC
Confidence 22222222222111 1 1123444444443333222 1456789999999999 688899999
Q ss_pred CeEEEEECCC
Q psy4579 323 SDVLVFDYTK 332 (368)
Q Consensus 323 g~i~iwd~~~ 332 (368)
|+|++||+.+
T Consensus 308 g~i~vWd~~t 317 (319)
T 3frx_A 308 NVIRVWQVMT 317 (319)
T ss_dssp SCEEEEEEEE
T ss_pred ceEEEEEEee
Confidence 9999999863
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=229.00 Aligned_cols=274 Identities=15% Similarity=0.190 Sum_probs=187.7
Q ss_pred hhhhhhhhhcCc--chheeecccccccCceeeEecCCcccccCCCCccccccCcceeee-----ccccCCCC-CcEEEEE
Q psy4579 17 NEEYKIWKKNTP--FLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDK-----GTHTSDEQ-NHLLIAS 88 (368)
Q Consensus 17 ~~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~i~~ 88 (368)
+...++|+.... .+...+....+.-++.+++|+|++++|++++.|+.+++|+..... ........ ....|.+
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 112 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEE
Confidence 456788887653 222222222256689999999999999999999999877653211 11111111 2234778
Q ss_pred EecCCCccccccCCcccCCCCcccCCCCC-e----eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 89 VQLPNEDAQFDASNYDTDKGGNVQLPNED-A----QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~i~i~~~~-~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
+.|.+.+..+... +.||+|++|+.. . +....+.+|...|.+++|+|++ .+|++|+.|++|++||..++..
T Consensus 113 v~~sp~g~~las~----s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 113 VAWSNDGYYLATC----SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp EEECTTSCEEEEE----ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE
T ss_pred EEECCCCCEEEEE----eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe
Confidence 8886655433332 368999999983 2 3455677899999999999998 8999999999999999876421
Q ss_pred CCcccccceeeeccccceecceeeEEeCCC-CCeEEEeeCCCcEEEEECCCCCCCC-ccccceeeeec-ccccEeEEEEe
Q psy4579 164 ENRVIDAKTIFTGHTAVVEVRYGLSWNPSL-NGYLLSASDDHTICLWDINATPKEN-RVIDAKTIFTG-HTAVVEDYSIH 240 (368)
Q Consensus 164 ~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~-~~~~v~~v~~~ 240 (368)
.+...+.+|.+.|. +++|+|+. +.+|++|+.|++|++||++.+.... ..+.+...+.+ |...|.+++|+
T Consensus 188 -----~~~~~~~~h~~~v~---~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 188 -----ECVAVLNGHEGTVW---SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp -----EEEEEECCCSSCEE---EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred -----eEEEEccCCCCcEE---EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 25678899999995 99999973 3579999999999999987642211 11123344444 88999999997
Q ss_pred e-ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCc--eeeeeecCccc-ceeEEEEeC--CCCc
Q psy4579 241 R-LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK--IEIEIKINHEG-EVNRARYMP--QNPC 314 (368)
Q Consensus 241 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~h~~-~i~~~~~~p--~~~~ 314 (368)
+ ..+++++.|+.+++|... +++ .......+|.. .|++++|+| ++ .
T Consensus 260 ~~~~l~s~~~dg~v~iw~~~----------------------------~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~ 310 (330)
T 2hes_X 260 FNGLIASVGADGVLAVYEEV----------------------------DGEWKVFAKRALCHGVYEINVVKWLELNGK-T 310 (330)
T ss_dssp TTSCEEEEETTSCEEEEEEE----------------------------TTEEEEEEEESCTTTTSCEEEEEEC------C
T ss_pred CCCEEEEEeCCCEEEEEEcC----------------------------CCceEEEeccccccccceEEEEEEecCCCc-e
Confidence 4 345666666666665432 221 12222236877 899999999 45 6
Q ss_pred EEEEecCCCeEEEEECCC
Q psy4579 315 VIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 315 ~lasgs~Dg~i~iwd~~~ 332 (368)
+||||+.||+|++||++.
T Consensus 311 ~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSEEEEEEC--
T ss_pred EEEEecCCCcEEEEEecc
Confidence 889999999999999863
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=3.9e-29 Score=228.55 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=199.8
Q ss_pred ceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeee
Q psy4579 43 SLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDA 122 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~ 122 (368)
+.+++|+|++++|++++.|+.+.+|+. ..+...........+....+++.+..+..+ +.||.|++|+.......
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNT--IIRDGSKMLKRADYTAVDTAKLQMRRFILG----TTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEEC--CSEETTTTSCSCCEEEEEEECSSSCEEEEE----ETTSCEEEECTTSCEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEe--cccceeeEEecCCceEEEEEecCCCEEEEE----ECCCCEEEEeCCCccee
Confidence 457999999999999999999866654 444443333333344444455544443333 35899999998765444
Q ss_pred c-cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee
Q psy4579 123 S-NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201 (368)
Q Consensus 123 ~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s 201 (368)
. +.+|.+.|++++|+|++ .+|++|+.||.|++||+.++. ....+.+|...|. +++|+|+ +.+|++++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~---~~~~~~~-~~~l~s~~ 200 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS-------NPRTLIGHRATVT---DIAIIDR-GRNVLSAS 200 (420)
T ss_dssp EETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------CCEEEECCSSCEE---EEEEETT-TTEEEEEE
T ss_pred eecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc-------CceEEcCCCCcEE---EEEEcCC-CCEEEEEc
Confidence 4 46899999999999998 899999999999999998764 4678899999996 9999998 99999999
Q ss_pred CCCcEEEEECCCCCCCCccccceeeee---cccccEeEEEEeeecc---cccCCCCccceEEEEeecCCccccccccccc
Q psy4579 202 DDHTICLWDINATPKENRVIDAKTIFT---GHTAVVEDYSIHRLIL---GTHTSDEQNHLLIASVQLPNEDAQFDASNYD 275 (368)
Q Consensus 202 ~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d 275 (368)
.||.|++||++++ .+...+. .+...+.++++.+.-- ..... -.+..+.+.+++..+...
T Consensus 201 ~d~~v~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~--- 265 (420)
T 3vl1_A 201 LDGTIRLWECGTG-------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST-----SKKNNLEFGTYGKYVIAG--- 265 (420)
T ss_dssp TTSCEEEEETTTT-------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC-----CCCCTTCSSCTTEEEEEE---
T ss_pred CCCcEEEeECCCC-------ceeEEeecCCCCCCCccEEEEecCCcceeeeccc-----CcccceEEcCCCCEEEEE---
Confidence 9999999999887 3445554 3667788888864100 00000 000111122222222221
Q ss_pred CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec-ccC
Q psy4579 276 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQK 354 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g-h~~ 354 (368)
...+.+.+|+..+++....+..+|...|.+++|+|++..+|++|+.||.|++||++.. ..++..+.+ |..
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~---------~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP---------ECPVGEFLINEGT 336 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT---------TSCSEEEEESTTS
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC---------cCchhhhhccCCC
Confidence 1345577888888887777776799999999999999658999999999999999852 133456665 677
Q ss_pred ceeeeccee
Q psy4579 355 EGLIEGTYN 363 (368)
Q Consensus 355 ~V~~l~w~p 363 (368)
.|.++.|.+
T Consensus 337 ~v~~~~~~~ 345 (420)
T 3vl1_A 337 PINNVYFAA 345 (420)
T ss_dssp CEEEEEEET
T ss_pred CceEEEeCC
Confidence 888887654
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4e-30 Score=230.07 Aligned_cols=258 Identities=17% Similarity=0.201 Sum_probs=187.6
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccC----C-CCCcEEEEEEec
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTS----D-EQNHLLIASVQL 91 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~i~~~~~ 91 (368)
+...++|+..+......+..+ .-++.+++|+|++..+++++.|+.+.+|........... . ......|..+.|
T Consensus 85 Dg~v~vWd~~~~~~~~~~~~~--~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 85 DGKVIVWDSFTTNKEHAVTMP--CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECS--SSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred CCeEEEEECCCCCcceEEecC--CCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 456778887665444333322 346889999999999999999999976654322110000 0 011234667777
Q ss_pred CCCccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCccc
Q psy4579 92 PNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVI 168 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~ 168 (368)
.+.+..+..+ +.||+|++|+... +....+.+|...|.+++|+|+ + +.|++|+.||+|++||++++.
T Consensus 163 ~~~~~~l~t~----s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~------ 231 (354)
T 2pbi_B 163 TNSDMQILTA----SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQ------ 231 (354)
T ss_dssp CSSSSEEEEE----ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCC------
T ss_pred eCCCCEEEEE----eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCc------
Confidence 6655444433 3689999999864 556677889999999999885 4 799999999999999998874
Q ss_pred ccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeec--ccccEeEEEEee--ecc
Q psy4579 169 DAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVEDYSIHR--LIL 244 (368)
Q Consensus 169 ~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~~--~~~ 244 (368)
+...+.+|...|. +++|+|+ +.+|++|+.|++|++||++... ....+.. +...+.+++|++ ..+
T Consensus 232 -~~~~~~~h~~~v~---~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 232 -CVQAFETHESDVN---SVRYYPS-GDAFASGSDDATCRLYDLRADR-------EVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp -EEEEECCCSSCEE---EEEECTT-SSEEEEEETTSCEEEEETTTTE-------EEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred -EEEEecCCCCCeE---EEEEeCC-CCEEEEEeCCCeEEEEECCCCc-------EEEEEcCCCcccceeEEEEeCCCCEE
Confidence 5678899999996 9999998 8999999999999999998762 2333332 334678888875 233
Q ss_pred cccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCe
Q psy4579 245 GTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSD 324 (368)
Q Consensus 245 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~ 324 (368)
.+++.|+. +.+|+..+++....+. +|.+.|++++|+|++ .+|+||+.||+
T Consensus 300 ~~g~~d~~----------------------------i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg-~~l~sgs~D~~ 349 (354)
T 2pbi_B 300 FAGYNDYT----------------------------INVWDVLKGSRVSILF-GHENRVSTLRVSPDG-TAFCSGSWDHT 349 (354)
T ss_dssp EEEETTSC----------------------------EEEEETTTCSEEEEEC-CCSSCEEEEEECTTS-SCEEEEETTSE
T ss_pred EEEECCCc----------------------------EEEEECCCCceEEEEE-CCCCcEEEEEECCCC-CEEEEEcCCCC
Confidence 33333333 4444444555555554 899999999999999 67889999999
Q ss_pred EEEEE
Q psy4579 325 VLVFD 329 (368)
Q Consensus 325 i~iwd 329 (368)
|++|+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 35
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-31 Score=248.00 Aligned_cols=273 Identities=4% Similarity=-0.043 Sum_probs=180.2
Q ss_pred cccCceeeEecCCc---------ccccC-------------------CCCccccccCcceeeecccc----CC-CCCcEE
Q psy4579 39 LEWPSLTAQWLPDV---------TSVQL-------------------PNEDAQFDASNYDTDKGTHT----SD-EQNHLL 85 (368)
Q Consensus 39 ~~~~~~~~~~~p~~---------~~l~~-------------------~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~ 85 (368)
+..+|.+++|+|++ ++||+ ++.|+.+++|+... +... .. ......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~--~~~~~~~~~~l~~~~~~ 209 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNT--STLHCVKVQTIVHSFGE 209 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEET--TTCCEEEEEEEEECCCS
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccC--CCCCceEEEEEEecCCc
Confidence 57899999999986 55554 66778887776433 2211 00 011123
Q ss_pred EEEEecCCC-----ccccccCCcccCCCCcccCCCCCeee------------eeccccCCCCceeeEecCCCCCeeEEEe
Q psy4579 86 IASVQLPNE-----DAQFDASNYDTDKGGNVQLPNEDAQF------------DASNYDTDKGGYGLSWNPSLNGYLLSAS 148 (368)
Q Consensus 86 i~~~~~~~~-----~~~~~~~~~~~~~~g~i~i~~~~~~~------------~~~~~~h~~~v~~l~~sp~~~~~lasg~ 148 (368)
|..+.|.+. +..+.+++ +.||+|++|++.... ...+.+|...|++++|+|+ ..||+|+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~---s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs 284 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFV---SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGF 284 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEE---ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEE
T ss_pred EEEEEECCCCCCCCCCceEEEE---ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEe
Confidence 667777543 12334433 459999999986431 1245679999999999985 5899999
Q ss_pred CCCcEEEEeCCCCCCCCcccccceeeeccccceecceee--EEeCCCC-CeEEEeeCCCcEEEEECCCCCCCCcccccee
Q psy4579 149 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL--SWNPSLN-GYLLSASDDHTICLWDINATPKENRVIDAKT 225 (368)
Q Consensus 149 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i--~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 225 (368)
.||+|++||++++.. +...+.+|...|. ++ +|+|+ + .+|||||.|++|+|||++++ .+..
T Consensus 285 ~DgtV~lWD~~~~~~------~~~~~~~H~~~V~---sv~~~~s~~-g~~~laS~S~D~tvklWD~~~~-------~~~~ 347 (524)
T 2j04_B 285 KNGFVAEFDLTDPEV------PSFYDQVHDSYIL---SVSTAYSDF-EDTVVSTVAVDGYFYIFNPKDI-------ATTK 347 (524)
T ss_dssp TTSEEEEEETTBCSS------CSEEEECSSSCEE---EEEEECCTT-SCCEEEEEETTSEEEEECGGGH-------HHHC
T ss_pred CCCEEEEEECCCCCC------ceEEeecccccEE---EEEEEcCCC-CCeEEEEeccCCeEEEEECCCC-------Cccc
Confidence 999999999986532 4567899999996 88 56776 6 89999999999999999876 3345
Q ss_pred eeecccc--cEeEEEEeee--cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCccc
Q psy4579 226 IFTGHTA--VVEDYSIHRL--ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG 301 (368)
Q Consensus 226 ~~~~~~~--~v~~v~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~ 301 (368)
.+.+|.. .|.+++|+|. .+++++.|+.+++ |+.+++.....+. +|.+
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l----------------------------wd~~~~~~~~~l~-gH~~ 398 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA----------------------------VPSRAAFAVHPLV-SRET 398 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE----------------------------EETTCTTCCEEEE-ECSS
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEE----------------------------EECcccccceeee-cCCC
Confidence 5666653 4788999872 3444444443333 3333444444455 7999
Q ss_pred ceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCC------------------CCCC----------------CCCCce
Q psy4579 302 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP------------------DPNG----------------ECHPDL 347 (368)
Q Consensus 302 ~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~------------------~~~~----------------~~~~~~ 347 (368)
.|++++|+|++ .+|++|+.||+|++||+....... .+.+ ......
T Consensus 399 ~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 399 TITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA 477 (524)
T ss_dssp CEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred ceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence 99999999999 577899999999999965321110 0001 022334
Q ss_pred eeecccCceeeecceeee
Q psy4579 348 RLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 348 ~~~gh~~~V~~l~w~p~~ 365 (368)
.+.+|...|++|+|||+.
T Consensus 478 ~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 478 KIDAHGINITCTKWNETS 495 (524)
T ss_dssp ----CCCSCCCEEECCST
T ss_pred eecCCCceEEEEECCCCC
Confidence 677899999999999984
No 36
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9.7e-31 Score=230.42 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=180.2
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCC-CccccccCCcccCCCCcccCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPN-EDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+.-+|.+++|+|++++|++|+.|+.+++|+............ .....|.++.|.+ .+....+++ +.||+|++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~---s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC---SYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEE---ETTSCEEEEC
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEE---ECCCEEEEEE
Confidence 3566899999999999999999999997775432211111111 1223477788743 223333333 4699999999
Q ss_pred CCee---eeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 116 EDAQ---FDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 116 ~~~~---~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
.... ....+.+|...|++++|+|+ + .+|++|+.||+|++||++.... ......+.+|...+. +++|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~---~~~~~ 159 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCN---AVSWA 159 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBC---CCEEC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcc---eEEEc
Confidence 8752 34556789999999999998 5 7999999999999999986521 012345678988886 99999
Q ss_pred CCC----------------CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee------cccccC
Q psy4579 191 PSL----------------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL------ILGTHT 248 (368)
Q Consensus 191 p~~----------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~~~~ 248 (368)
|+. +.+|++|+.|++|++||++.... +.+...+.+|...|++++|+|. .+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc----cceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 962 36899999999999999965321 1245678899999999999873 477777
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF 328 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iw 328 (368)
.|+.+++|..... . .+.........|...|.+++|+|++ .+||+|+.||+|++|
T Consensus 236 ~D~~v~iw~~~~~---------------~----------~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw 289 (316)
T 3bg1_A 236 QDGRVFIWTCDDA---------------S----------SNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLW 289 (316)
T ss_dssp TTCEEEEEECSST---------------T----------CCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEE
T ss_pred CCCeEEEEEccCc---------------c----------ccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEE
Confidence 7777776642200 0 0000111122688999999999999 688899999999999
Q ss_pred ECC
Q psy4579 329 DYT 331 (368)
Q Consensus 329 d~~ 331 (368)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=2.5e-29 Score=221.64 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=170.4
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCe------eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDI 158 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 158 (368)
.|.++.+.+....+.+++ +.||+|++|+... .....+.+|...|.+++|+|++ .+|++|+.|++|++||+
T Consensus 19 ~V~~l~~~~~~~~~l~s~---s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSA---SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDV 94 (319)
T ss_dssp CEEEEEECSSCTTEEEEE---ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEET
T ss_pred eEEEEEccCCCccEEEEe---cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence 467777755443333333 4699999998753 2345678899999999999999 99999999999999999
Q ss_pred CCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 159 NATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
.++. ....+.+|...|. +++|+|+ +.+|++|+.|++|++||++.. ++..+.+|...|.++.
T Consensus 95 ~~~~-------~~~~~~~h~~~v~---~~~~~~~-~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 95 ATGE-------TYQRFVGHKSDVM---SVDIDKK-ASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVR 155 (319)
T ss_dssp TTTE-------EEEEEECCSSCEE---EEEECTT-SCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEE
T ss_pred CCCC-------eeEEEccCCCcEE---EEEEcCC-CCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEE
Confidence 8874 5678899999996 9999998 999999999999999999753 4677888999999999
Q ss_pred Eeee--------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 239 IHRL--------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 239 ~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
|.|. .+.+++.| +.+.+|+..+++....+. +|...|++++|+|
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d----------------------------~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp 206 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGND----------------------------KMVKAWNLNQFQIEADFI-GHNSNINTLTASP 206 (319)
T ss_dssp ECCC------CCEEEEEETT----------------------------SCEEEEETTTTEEEEEEC-CCCSCEEEEEECT
T ss_pred EccCCCCCCCccEEEEEeCC----------------------------CEEEEEECCcchhheeec-CCCCcEEEEEEcC
Confidence 9763 23333333 334455555566555555 8999999999999
Q ss_pred CCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++ .+|++|+.||+|++||++. ...+..+. +...|.+++|+|+.
T Consensus 207 ~g-~~l~s~~~dg~i~iwd~~~----------~~~~~~~~-~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 207 DG-TLIASAGKDGEIMLWNLAA----------KKAMYTLS-AQDEVFSLAFSPNR 249 (319)
T ss_dssp TS-SEEEEEETTCEEEEEETTT----------TEEEEEEE-CCSCEEEEEECSSS
T ss_pred CC-CEEEEEeCCCeEEEEECCC----------CcEEEEec-CCCcEEEEEEcCCC
Confidence 99 6888999999999999975 33344454 45689999999975
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=3.1e-29 Score=223.39 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=188.1
Q ss_pred cccCceeeEe-----cC-CcccccCCCCccccccCcceeee-----ccccCC-CCCcEEEEEEecCCCccccccCCcccC
Q psy4579 39 LEWPSLTAQW-----LP-DVTSVQLPNEDAQFDASNYDTDK-----GTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTD 106 (368)
Q Consensus 39 ~~~~~~~~~~-----~p-~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 106 (368)
+.-+|.+++| +| ++++|++|+.|+.+++|+..... +..... ......|.++.+.+.+..+. ++ +
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~-s~---s 95 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI-SS---S 95 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE-EE---E
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE-EE---c
Confidence 4568999999 76 99999999999999777653211 111111 11223477777765443332 22 4
Q ss_pred CCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecce
Q psy4579 107 KGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185 (368)
Q Consensus 107 ~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 185 (368)
.||+|++|+... +....+.+|...|++++|+|++ ++|++|+.|++|++||+..... .......+|...+.
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~v~--- 166 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-----FSSAEKENHSDWVS--- 166 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-----EECCTTTSCSSCEE---
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-----eeeecccCCCceee---
Confidence 699999999864 5566778899999999999998 8999999999999999974310 00111236888886
Q ss_pred eeEEeCCC---------CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccc
Q psy4579 186 GLSWNPSL---------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNH 254 (368)
Q Consensus 186 ~i~~~p~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~ 254 (368)
+++|+|+. +.+|++++.||.|++||.+. .....+.+|...|.+++|+| ..+++++.|+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence 99999973 16899999999999999433 34567888999999999986 4566666666666
Q ss_pred eEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCC
Q psy4579 255 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP 334 (368)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~ 334 (368)
+|... ........+ .+...|.+++|+|++ .++++ +.|+.|++||+....
T Consensus 239 iwd~~---------------------------~~~~~~~~~--~~~~~v~~v~~sp~~-~~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 239 IWDIL---------------------------NLTYPQREF--DAGSTINQIAFNPKL-QWVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEESS---------------------------CCSSCSEEE--ECSSCEEEEEECSSS-CEEEE-EESSCEEEEESSSCC
T ss_pred EEECC---------------------------CCcccceee--cCCCcEEEEEECCCC-CEEEE-ECCCCEEEEEeCCCC
Confidence 55321 001111112 355679999999998 56754 568899999997532
Q ss_pred CCCCCCCCCCC---ceeeecccCceeeecceeee
Q psy4579 335 SKPDPNGECHP---DLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 335 ~~~~~~~~~~~---~~~~~gh~~~V~~l~w~p~~ 365 (368)
......-...+ .....+|...|++++|+|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 21100000000 01123799999999999975
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.4e-28 Score=217.74 Aligned_cols=289 Identities=12% Similarity=0.078 Sum_probs=208.4
Q ss_pred cccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 37 HALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
+...-++.+++|+|||+.++++..++.+..+...... ...........|.++.+.+.+..+.+.. ||.|++|+.
T Consensus 6 ~~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~ 79 (337)
T 1gxr_A 6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-RQINTLNHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDI 79 (337)
T ss_dssp EEEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-EEEEEECCSSCCCEEEECSSSSEEEEEC-----BSEEEEEET
T ss_pred cccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-ccceeccCCCceEEEEEecCCcEEEEcC-----CCeEEEEEC
Confidence 3445588999999999999988877766444322211 1111112223466777765554444332 799999998
Q ss_pred Ceee------eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 117 DAQF------DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 117 ~~~~------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
+... .....+|...|.+++|+|++ ++|++++.||.|++||+.++.. .....+.+|...+. +++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~~~i~---~~~~~ 150 (337)
T 1gxr_A 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP-----RIKAELTSSAPACY---ALAIS 150 (337)
T ss_dssp TSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEE---EEEEC
T ss_pred CCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCc-----ceeeecccCCCceE---EEEEC
Confidence 6422 11223799999999999998 8999999999999999987642 13466788988886 99999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEE----------
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIA---------- 258 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~---------- 258 (368)
|+ +.++++++.||.|++||++++ .+...+.+|...+.+++|++ ..+.+++.++.+++|..
T Consensus 151 ~~-~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 151 PD-SKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CC-CCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec
Confidence 98 899999999999999999886 45677888999999999985 46667777777777631
Q ss_pred ------EeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 259 ------SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 259 ------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+.++...+.+. ...+.+.+|+...++.. .+ ..|...|.+++|+|++ .+|++++.||.|++||++.
T Consensus 223 ~~~~v~~~~~s~~~~~l~~~---~~~~~i~~~~~~~~~~~-~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 223 FTSQIFSLGYCPTGEWLAVG---MESSNVEVLHVNKPDKY-QL-HLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTSSCEE-EE-CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEE---cCCCcEEEEECCCCCeE-EE-cCCccceeEEEECCCC-CEEEEecCCCcEEEEECCC
Confidence 22233333222222 23456777888777643 33 3799999999999999 6788999999999999975
Q ss_pred CCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 333 HPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
... .....|...|.+++|+|+.
T Consensus 297 ----------~~~-~~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 297 ----------GAS-IFQSKESSSVLSCDISVDD 318 (337)
T ss_dssp ----------CCE-EEEEECSSCEEEEEECTTS
T ss_pred ----------CeE-EEEecCCCcEEEEEECCCC
Confidence 222 2345789999999999875
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.7e-28 Score=214.12 Aligned_cols=228 Identities=14% Similarity=0.167 Sum_probs=168.9
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCe---eeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA---QFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~---~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~ 159 (368)
.|.++.|.+.+..+..+ +.||+|++|+.++ +....+.+|.++|++++|+|. + ++||+|+.||+|++||++
T Consensus 11 ~V~~~~~s~~g~~las~----s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATC----SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CEEEEEECTTSSEEEEE----ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBS
T ss_pred ceEEEEECCCCCEEEEE----eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcC
Confidence 47777786655444333 3689999999853 455677899999999999864 6 899999999999999998
Q ss_pred CCCCCCcccccceeeeccccceecceeeEEeCCC-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 160 ATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
++.. .....+.+|...|. +++|+|+. +.+|++|+.|++|++||++..... ....+.+|...|++++
T Consensus 86 ~~~~-----~~~~~~~~h~~~v~---~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-----~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 86 NGRW-----SQIAVHAVHSASVN---SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-----SPIIIDAHAIGVNSAS 152 (297)
T ss_dssp SSCB-----CCCEEECCCSSCEE---EEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-----CCEEEECCSSCEEEEE
T ss_pred CCce-----EEEEEeecCCCcee---EEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-----eeeeeecccCccceEe
Confidence 7532 13467788999996 99999963 679999999999999999875321 1346778999999999
Q ss_pred Eeee---------------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCc----eeeeeecCc
Q psy4579 239 IHRL---------------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK----IEIEIKINH 299 (368)
Q Consensus 239 ~~~~---------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~h 299 (368)
|+|. .+++++.|+.+++|. ..++. ....+. +|
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd----------------------------~~~~~~~~~~~~~l~-~H 203 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK----------------------------YNSDAQTYVLESTLE-GH 203 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEE----------------------------EETTTTEEEEEEEEC-CC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEE----------------------------EcCCCceEEEEEEec-CC
Confidence 9874 344555555444443 32332 223333 89
Q ss_pred ccceeEEEEeCCC--CcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee--ecccCceeeecceeeee
Q psy4579 300 EGEVNRARYMPQN--PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL--RGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 300 ~~~i~~~~~~p~~--~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~l~w~p~~~ 366 (368)
...|.+++|+|++ ..+||||+.|++|++||++... +. .....+ .+|...|++++|+|+..
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~------~~-~~~~~~~~~~~~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ------GP-WKKTLLKEEKFPDVLWRASWSLSGN 267 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT------SC-CEEEESSSSCCSSCEEEEEECSSSC
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC------Cc-cceeeeecccCCCcEEEEEECCCCC
Confidence 9999999999985 4789999999999999997521 00 011122 57899999999999753
No 41
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.4e-29 Score=225.85 Aligned_cols=273 Identities=9% Similarity=-0.007 Sum_probs=171.1
Q ss_pred ccccccCceeeEecCCcccccCCCCcc-------ccccCcceeeeccccC--------C-CCCcEEEEEEecCCCccccc
Q psy4579 36 THALEWPSLTAQWLPDVTSVQLPNEDA-------QFDASNYDTDKGTHTS--------D-EQNHLLIASVQLPNEDAQFD 99 (368)
Q Consensus 36 ~~~~~~~~~~~~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~--------~-~~~~~~i~~~~~~~~~~~~~ 99 (368)
.+++..||.|++|+||++.|++|+.+. .+++|..+........ . ..+...+.++.+.. +..+.
T Consensus 10 ~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~-~~~~~ 88 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK-GIILV 88 (365)
T ss_dssp EEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-TEEEE
T ss_pred ecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-CEEEE
Confidence 355788999999999999999986544 3544443221110000 0 00011122222211 10000
Q ss_pred cC------CcccCCCCcccCCCCCee-----ee-----eccccCCCCceeeEecCCCCCeeEE--EeCCCcEEEEeCCCC
Q psy4579 100 AS------NYDTDKGGNVQLPNEDAQ-----FD-----ASNYDTDKGGYGLSWNPSLNGYLLS--ASDDHTICLWDINAT 161 (368)
Q Consensus 100 ~~------~~~~~~~g~i~i~~~~~~-----~~-----~~~~~h~~~v~~l~~sp~~~~~las--g~~dg~v~iwd~~~~ 161 (368)
+. -+....|+.+++|+.+.. .. .....+...+.+++|+|+| +++|+ ++.|++|+|||++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCC
Confidence 00 011245788999875421 11 1123355678999999999 87664 557999999999886
Q ss_pred CCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee
Q psy4579 162 PKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 241 (368)
. +...+. |.+.|. +++|+|+ +.++++++.| .+++|+..++.. .......+|...|.+++|+|
T Consensus 168 ~-------~~~~~~-~~~~V~---~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~-----~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 168 T-------EKFEIE-TRGEVK---DLHFSTD-GKVVAYITGS-SLEVISTVTGSC-----IARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp E-------EEEEEE-CSSCCC---EEEECTT-SSEEEEECSS-CEEEEETTTCCE-----EEEECCCCTTEEEEEEEEEE
T ss_pred c-------EEEEeC-CCCceE---EEEEccC-CceEEeccce-eEEEEEeccCcc-----eeeeecCCCCCCEEEEEEcC
Confidence 4 344454 777885 9999999 9999999855 566666666532 11234456888999999987
Q ss_pred --ecccccCCCCcc--ceEEEEeecCCcccccccccccCCCCCcccccCCCCce---eeeeecCcccceeEEEEeCCCCc
Q psy4579 242 --LILGTHTSDEQN--HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI---EIEIKINHEGEVNRARYMPQNPC 314 (368)
Q Consensus 242 --~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~p~~~~ 314 (368)
..+.+++.++.. .++.+.. ..... ......+|...|++++|+|++ .
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~--------------------------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~ 282 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISI--------------------------KSGNTSVLRSKQVTNRFKGITSMDVDMKG-E 282 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEE--------------------------ETTEEEEEEEEEEESSCSCEEEEEECTTS-C
T ss_pred CCCEEEEEecCCcceeEEeeccc--------------------------ccceecceeeeeecCCCCCeEeEEECCCC-C
Confidence 233333333222 2222221 11111 111223799999999999999 7
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCCCCCcee-eecccCceeeecceeee
Q psy4579 315 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 315 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~w~p~~ 365 (368)
+||+|+.|++|+|||++. ..++.. +.+|.+.|++|+|+|+.
T Consensus 283 ~lasgs~D~~V~iwd~~~----------~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKD----------LSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEETTSCEEEEETTT----------TEEEEEETTSSSSCEEEEEECTTS
T ss_pred ceEEEcCCCEEEEEECCC----------CcEEEEecCcccCCEEEEEECCCC
Confidence 899999999999999975 344444 47999999999999975
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=4.3e-29 Score=225.63 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=205.5
Q ss_pred hhhhhcCcchheeecccccccCceeeEecCCc-ccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCcccc
Q psy4579 21 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQF 98 (368)
Q Consensus 21 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 98 (368)
.+|......++..+.. +.-++.+++|+|++ ++|++|+.|+.+++|+........... ......|.++.|.+.+...
T Consensus 56 ~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASP--FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHHTTCEEEEEECC--CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred ccccccccceEEeccC--CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 3455555555554433 35689999999999 999999999999777655332222222 1234467888886633333
Q ss_pred ccCCcccCCCCcccCCCCCeeeeecccc---CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee
Q psy4579 99 DASNYDTDKGGNVQLPNEDAQFDASNYD---TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 99 ~~~~~~~~~~g~i~i~~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
.+++ +.||.|++|+..+.....+.. |...|.+++|+|++ .+|++|+.||.|++||++.. +...+.
T Consensus 134 l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--------~~~~~~ 201 (383)
T 3ei3_B 134 LFVS---SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGH--------EIFKEK 201 (383)
T ss_dssp EEEE---ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSC--------EEEEEE
T ss_pred EEEE---eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCC--------EEEEec
Confidence 3332 358999999998765555544 45889999999998 89999999999999999532 567889
Q ss_pred ccccceecceeeEEeCCCCC-eEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCC
Q psy4579 176 GHTAVVEVRYGLSWNPSLNG-YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDE 251 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~ 251 (368)
+|...|. +++|+|+ +. +|++|+.|+.|++||+++..... .++..+ +|...|.+++|++ ..+.+++.|+
T Consensus 202 ~h~~~v~---~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~ 273 (383)
T 3ei3_B 202 LHKAKVT---HAEFNPR-CDWLMATSSVDATVKLWDLRNIKDKN---SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN 273 (383)
T ss_dssp CSSSCEE---EEEECSS-CTTEEEEEETTSEEEEEEGGGCCSTT---CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred cCCCcEE---EEEECCC-CCCEEEEEeCCCEEEEEeCCCCCccc---ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence 9999996 9999999 66 99999999999999998753322 233444 6999999999987 5777888888
Q ss_pred ccceEEEEeecCCc------------c----------ccccccccc-------CCCCCcccccCCCCceeeeeecC-ccc
Q psy4579 252 QNHLLIASVQLPNE------------D----------AQFDASNYD-------TDKGDFGGFGSVSGKIEIEIKIN-HEG 301 (368)
Q Consensus 252 ~~~~~~~~~~~~~~------------~----------~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~~~-h~~ 301 (368)
.+++|......... . .......+. ...+.+.+|+..+++....+... |..
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~ 353 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAG 353 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence 88877532110000 0 000001111 24567889999999887777622 567
Q ss_pred ceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 302 EVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 302 ~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+++|+|++ .+|++|+ ||.|++||++.
T Consensus 354 ~~~~~~~s~~g-~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IISLNKFSPTG-DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEECTTS-SEEEEEE-TTEEEEEECC-
T ss_pred eEEEEEEecCc-cEEEEec-CCcEEEEecCC
Confidence 78888999999 6888887 99999999963
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.7e-29 Score=229.35 Aligned_cols=250 Identities=15% Similarity=0.166 Sum_probs=175.9
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF 120 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~ 120 (368)
.+.+++|+||+++|++|+.|+.+++|+.. .+..... ......|.++.|.+.+..+... +.||.|++|+.....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSG----SGDRTVRIWDLRTGQ 198 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECC--CCcEEEEEccCCCCEEEEEEcCCCCEEEEe----cCCCcEEEEECCCCe
Confidence 48899999999999999999999776543 3332222 1122347778886555444322 368999999987654
Q ss_pred eeccccCCCCceeeEecC-CCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEE
Q psy4579 121 DASNYDTDKGGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLS 199 (368)
Q Consensus 121 ~~~~~~h~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s 199 (368)
......+...+.+++|+| ++ .+|++|+.||.|++||++++..............+|...|. +++|+|+ +.+|++
T Consensus 199 ~~~~~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~---~v~~~~~-g~~l~s 273 (393)
T 1erj_A 199 CSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY---SVVFTRD-GQSVVS 273 (393)
T ss_dssp EEEEEECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE---EEEECTT-SSEEEE
T ss_pred eEEEEEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEE---EEEECCC-CCEEEE
Confidence 444556778899999999 66 89999999999999999876421110001112267999995 9999998 899999
Q ss_pred eeCCCcEEEEECCCCCCCCc-----cccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccc
Q psy4579 200 ASDDHTICLWDINATPKENR-----VIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDAS 272 (368)
Q Consensus 200 ~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
|+.||+|++||+++...... ...+...+.+|...|.+++|++ ..+.+++.|+.+
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v------------------- 334 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV------------------- 334 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE-------------------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE-------------------
Confidence 99999999999986432110 0123456778999999999975 234444444333
Q ss_pred cccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC------CCCcEEEEecCCCeEEEEECCC
Q psy4579 273 NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP------QNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p------~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+|+..+++....+. +|...|.+++|+| ++ .+||||+.||+|++|+++.
T Consensus 335 ---------~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~-~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 335 ---------LFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ---------EEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEEE
T ss_pred ---------EEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCC-CEEEEECCCCcEEECcccc
Confidence 334444566665565 8999999999987 45 6899999999999999864
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=221.16 Aligned_cols=292 Identities=13% Similarity=0.127 Sum_probs=197.3
Q ss_pred CcchheeecccccccCceeeEecCCcccc-cCCCC---ccccccCcceeeeccccCCCCCcEEEEEEecCCCc--ccccc
Q psy4579 27 TPFLYDLVMTHALEWPSLTAQWLPDVTSV-QLPNE---DAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNED--AQFDA 100 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~ 100 (368)
.|.+...+.. .+.-++.+++|+|++..+ ++++. |+.+.+|+.................|.++.|.+.. ....+
T Consensus 6 ~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 6 KPQIIAHIQK-GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CCCEEEEEEE-ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred hhHHhhhhcc-CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEE
Confidence 3444444433 366799999999999654 56665 88886665443211111111222357788886652 23333
Q ss_pred CCcccCCCCcccCCCCCee--eeeccccCCCCceeeE------ecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccce
Q psy4579 101 SNYDTDKGGNVQLPNEDAQ--FDASNYDTDKGGYGLS------WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 101 ~~~~~~~~g~i~i~~~~~~--~~~~~~~h~~~v~~l~------~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~ 172 (368)
.+ +.||.|++|+.... ....+.+|...|.+++ |+|++ .+|++|+.||.|++||++++.. +..
T Consensus 85 ~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~------~~~ 154 (357)
T 3i2n_A 85 TG---DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDD------PVA 154 (357)
T ss_dssp EE---ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSS------CSE
T ss_pred Ee---cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCC------cce
Confidence 33 35899999998753 4566778999999994 57888 8999999999999999987642 345
Q ss_pred eeecccc----ceecceeeE----EeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---
Q psy4579 173 IFTGHTA----VVEVRYGLS----WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--- 241 (368)
Q Consensus 173 ~~~~h~~----~v~~~~~i~----~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--- 241 (368)
.+..|.+ .+ .+++ |+|+ +.+|++++.||.|++||++++. ......|...|.+++|+|
T Consensus 155 ~~~~~~~~~~~~v---~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 155 NMEPVQGENKRDC---WTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMA--------LRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp EECCCTTSCCCCE---EEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTE--------EEEEEECSSCEEEEEESCSSS
T ss_pred eccccCCCCCCce---EEEEEEeccCCC-CCEEEEEccCCeEEEEECccCc--------eeeecCCCCceEEEEcCCCCC
Confidence 6655544 55 3777 6787 8999999999999999998863 233456888999999986
Q ss_pred --ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEe
Q psy4579 242 --LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATK 319 (368)
Q Consensus 242 --~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasg 319 (368)
..+.+++.++.+++|....... ..........+|...|.+++|+|++..+|++|
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHP------------------------TKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEET------------------------TTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCeEEEEeCcCCCc------------------------ccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 4556666666666654432100 00111111237999999999999995589999
Q ss_pred cCCCeEEEEECCCCCCCCCCC---------CCCCCceeeecccCceeeecceeee
Q psy4579 320 TPSSDVLVFDYTKHPSKPDPN---------GECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 320 s~Dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+.||.|++||++......... +....+..+.+|.+.|.+++|+|+.
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 333 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK 333 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence 999999999998643221110 1113455678999999999999975
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=5.7e-29 Score=227.80 Aligned_cols=264 Identities=14% Similarity=0.238 Sum_probs=195.0
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCC
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNE 94 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 94 (368)
++...++|+..+..+...+..+....+|.+++|+|+|++|++|+.|+.+.+|+.. .+...... .....+.++.+.
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~--~~~~~~~~~~h~~~v~~~s~~-- 198 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWN-- 198 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEE--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCceEEEeeC--
Confidence 3667899999988777766666677789999999999999999999999777554 33332221 111234444442
Q ss_pred ccccccCCcccCCCCcccCCCCCe--eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccce
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDA--QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~--~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~ 172 (368)
..+.+++ +.|+.+++|+... .....+.+|...+.++.|+|++ .++++++.|+.+++|+...+.... ....
T Consensus 199 -~~~l~sg---s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~---~~~~ 270 (420)
T 4gga_A 199 -SYILSSG---SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGW---VPLQ 270 (420)
T ss_dssp -TTEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCS---CCSE
T ss_pred -CCEEEEE---eCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccc---eeee
Confidence 1223332 4689999998653 4456678899999999999999 999999999999999998765322 2456
Q ss_pred eeeccccceecceeeEEeCCCCCeEEE--eeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee----ecccc
Q psy4579 173 IFTGHTAVVEVRYGLSWNPSLNGYLLS--ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR----LILGT 246 (368)
Q Consensus 173 ~~~~h~~~v~~~~~i~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~ 246 (368)
....|...|. +++|+|.+..++++ |+.|++|++||++++ .+...+..| ..+.++.|.+ .+.++
T Consensus 271 ~~~~~~~~V~---~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-------~~~~~~~~~-~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 271 TFTQHQGAVK---AVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-------ACLSAVDAH-SQVCSILWSPHYKELISGH 339 (420)
T ss_dssp EECCCSSCEE---EEEECTTCTTEEEEEECTTTCEEEEEETTTT-------EEEEEEECS-SCEEEEEEETTTTEEEEEE
T ss_pred eecccCCcee---eeeeCCCcccEEEEEeecCCCEEEEEeCCcc-------ccceeeccc-cceeeeeecCCCCeEEEEE
Confidence 7788999996 99999986777776 458999999999987 344555544 4577777764 12222
Q ss_pred cCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEE
Q psy4579 247 HTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVL 326 (368)
Q Consensus 247 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~ 326 (368)
+..| +.+.+|+..+++.+..+. +|.+.|++++|+|++ .+|+|||.|++|+
T Consensus 340 g~~d----------------------------~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg-~~l~S~s~D~tvr 389 (420)
T 4gga_A 340 GFAQ----------------------------NQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDG-ATVASAAADETLR 389 (420)
T ss_dssp CTTT----------------------------CCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS-SCEEEEETTTEEE
T ss_pred ecCC----------------------------CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCC-CEEEEEecCCeEE
Confidence 2222 335555666677777776 899999999999999 6788999999999
Q ss_pred EEECCC
Q psy4579 327 VFDYTK 332 (368)
Q Consensus 327 iwd~~~ 332 (368)
|||+..
T Consensus 390 iWdv~~ 395 (420)
T 4gga_A 390 LWRCFE 395 (420)
T ss_dssp EECCSC
T ss_pred EEECCC
Confidence 999975
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.7e-28 Score=218.26 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=171.8
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeec--cccCCC-CCcEEEEEEecCCCccccccCCcccCCCCcccCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKG--THTSDE-QNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
...|+.+++|+|++++|++++.|+.+.+|+.. .+ ...... .....|.++.+.+.+..+... +.||.|++|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s~d~~v~vwd 83 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQD--GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC----SQDRNAYVYE 83 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEE--TTEEEECCCBCCCSSCEEEEEECTTTCCEEEE----ETTSSEEEC-
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEcc--CCceEEEEEEecCCceEEEEEEeCCCCEEEEE----eCCCeEEEEE
Confidence 34689999999999999999999999666544 33 233332 223457888886655443332 3589999999
Q ss_pred CCeee----eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec-cccceecceeeEEe
Q psy4579 116 EDAQF----DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVEVRYGLSWN 190 (368)
Q Consensus 116 ~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~i~~~ 190 (368)
..... ...+..|...|++++|+|++ ++|++|+.|+.|++||++++... .....+.+ |...|. +++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~h~~~v~---~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDW----WVSKHLKRPLRSTIL---SLDWH 155 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----C----CCCEEECSSCCSCEE---EEEEC
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccc----eeeeEeecccCCCeE---EEEEc
Confidence 87644 56677899999999999998 89999999999999999876421 13466777 999996 99999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCC-----------ccccceeeeecccccEeEEEEee--ecccccCCCCccceEE
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKEN-----------RVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLI 257 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~ 257 (368)
|+ +.+|++|+.||.|++||++...... +.-.+...+ +|...|.+++|+| ..+++++.|+.++
T Consensus 156 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~--- 230 (377)
T 3dwl_C 156 PN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVT--- 230 (377)
T ss_dssp TT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC---
T ss_pred CC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEE---
Confidence 98 8999999999999999996432111 011334455 8999999999986 2344444444333
Q ss_pred EEeecCCcccccccccccCCCCCcccccCCCCce----eeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 258 ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI----EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 258 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
+|+..+++. ...+. +|...|.+++|+|++ .+|++|+.|+.+ +|+..
T Consensus 231 -------------------------iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 231 -------------------------IAYPSAPEQPPRALITVK-LSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp --------------------------CEECSTTSCEEECCCEE-CSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred -------------------------EEECCCCCCcceeeEeec-CCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence 344444443 33344 899999999999999 688888766666 77665
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=219.64 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=215.0
Q ss_pred hhhhhhhhhhhcCcchheeecccccccCceeeEecC-CcccccCCCCccccccCcceeeeccccCC------------CC
Q psy4579 15 VINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTSVQLPNEDAQFDASNYDTDKGTHTSD------------EQ 81 (368)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 81 (368)
..+...++|..........+.. +.-++.+++|+| ++++|++++.||.+.+|+.+......... ..
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred eccCcceeeccccCcceeeeec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence 3556678888877666554444 467999999999 99999999999999777554322111110 01
Q ss_pred CcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCC--CeeEEEeCCCcEEEEeCC
Q psy4579 82 NHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLN--GYLLSASDDHTICLWDIN 159 (368)
Q Consensus 82 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~ 159 (368)
....|.++.+.+.+....+++ +.||.|++|+...........+...+.++.|+|.++ .++++|+.||.|++||++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSS---SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEE---ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred CCCcEEEEEEccCCCcEEEEE---eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 234577888865333333333 358999999998766666667889999999999652 499999999999999998
Q ss_pred CCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccc---------cceeeeecc
Q psy4579 160 ATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI---------DAKTIFTGH 230 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~ 230 (368)
++. ....+.+|...|. +++|+|++..+|++|+.||.|++||++........+ .......+|
T Consensus 175 ~~~-------~~~~~~~~~~~v~---~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 175 SGS-------CSHILQGHRQEIL---AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSC-------CCEEECCCCSCEE---EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred Ccc-------eeeeecCCCCcEE---EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 764 4678889999996 999999933369999999999999998764211110 112223578
Q ss_pred cccEeEEEEee--ecccccCCCCccceEEEEeecCC----------------------cccccccccccCCCCCcccccC
Q psy4579 231 TAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPN----------------------EDAQFDASNYDTDKGDFGGFGS 286 (368)
Q Consensus 231 ~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~d~~~~~~~~~~~ 286 (368)
...|.+++|++ ..+.+++.++.+++|........ ....+... ...+.+.+|+.
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~d~ 321 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV---PYGSTIAVYTV 321 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE---EETTEEEEEET
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE---ecCCEEEEEEC
Confidence 89999999986 46777777877777753211000 00011111 12356778888
Q ss_pred CCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCC
Q psy4579 287 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP 334 (368)
Q Consensus 287 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~ 334 (368)
.+++....+. +|...|.+++|+|++ .+|++|+.||.|++||++...
T Consensus 322 ~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 322 YSGEQITMLK-GHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp TTCCEEEEEC-CCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--
T ss_pred cCCcceeeec-cCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC
Confidence 8888877776 899999999999999 688899999999999998643
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=4e-29 Score=223.77 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=200.6
Q ss_pred cchhee--ecccccccCceeeEecCC----cccccCCCCccccccCcceeeeccccCC------CCCcEEEEEEecCCCc
Q psy4579 28 PFLYDL--VMTHALEWPSLTAQWLPD----VTSVQLPNEDAQFDASNYDTDKGTHTSD------EQNHLLIASVQLPNED 95 (368)
Q Consensus 28 ~~~~~~--~~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~ 95 (368)
|+.|.. .....+.-++.+++|+|+ ...+++++.++.+.+|+.. .+..... ......+.++.|.+..
T Consensus 4 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 4 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp -CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred eeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence 444443 233346779999999994 3445555566677666544 2222111 1122346677774432
Q ss_pred ---cccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecC-CCCCeeEEEeCCCcEEEEeCCCCCCCCccccc
Q psy4579 96 ---AQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDA 170 (368)
Q Consensus 96 ---~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~ 170 (368)
..+.+.+ +.||.|++|+... +....+.+|...|.+++|+| ++ .+|++|+.||.|++||++++. .
T Consensus 82 ~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~-------~ 150 (366)
T 3k26_A 82 NTSHPLLAVA---GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDT-------L 150 (366)
T ss_dssp TTCCEEEEEE---ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTE-------E
T ss_pred CCCCCEEEEe---cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCe-------E
Confidence 1233332 3589999999864 55566778999999999999 66 999999999999999998763 3
Q ss_pred ceee---eccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCcc---------------------ccceee
Q psy4579 171 KTIF---TGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV---------------------IDAKTI 226 (368)
Q Consensus 171 ~~~~---~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------------~~~~~~ 226 (368)
...+ .+|...|. +++|+|+ +.+|++++.||.|++||++++.....+ ......
T Consensus 151 ~~~~~~~~~~~~~v~---~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 151 VAIFGGVEGHRDEVL---SADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp EEEECSTTSCSSCEE---EEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred EEEecccccccCcee---EEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 4555 68999996 9999998 899999999999999999875211000 001223
Q ss_pred eecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEE
Q psy4579 227 FTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRA 306 (368)
Q Consensus 227 ~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 306 (368)
..+|...|.+++|+...+.+++.++.+++|..... ..... ..... .........+ .+|...|.++
T Consensus 227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~--~~~~~--------~~~~~~~~~~-~~~~~~v~~~ 291 (366)
T 3k26_A 227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKM----EDDID--KIKPS--------ESNVTILGRF-DYSQCDIWYM 291 (366)
T ss_dssp CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESST----TCCGG--GCCTT--------CCCEEEEEEE-ECSSCCSSCC
T ss_pred ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCc----ccccc--ccccC--------Ccchheeccc-cccCCcEEEE
Confidence 33488999999999878888888877777654311 00000 00000 0011222333 3799999999
Q ss_pred EEeCC--CCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecc--cCceeeecceeee
Q psy4579 307 RYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGLIEGTYNCY 365 (368)
Q Consensus 307 ~~~p~--~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~l~w~p~~ 365 (368)
+|+|+ + .+|++|+.||.|++||++.... .......+.+| ...|++++|+|+.
T Consensus 292 ~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 292 RFSMDFWQ-KMLALGNQVGKLYVWDLEVEDP------HKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CCEECTTS-SEEEEECTTSCEEEEECCSSSG------GGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEcCCCCC-cEEEEEecCCcEEEEECCCCCC------ccccceEEcccccCCceEEEEeCCCC
Confidence 99999 8 7888999999999999975210 01123356677 7999999999875
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=9.3e-28 Score=213.81 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=160.6
Q ss_pred EEEEEec-----CCCccccccCCcccCCCCcccCCCCCe--------eeeeccccCCCCceeeEecCCCCCeeEEEeCCC
Q psy4579 85 LIASVQL-----PNEDAQFDASNYDTDKGGNVQLPNEDA--------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDH 151 (368)
Q Consensus 85 ~i~~~~~-----~~~~~~~~~~~~~~~~~g~i~i~~~~~--------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg 151 (368)
.|.++.+ .+.+....+++ +.||+|++|+... .....+.+|...|++++|+|++ .++++|+.|+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sg---s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~ 98 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISG---SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDK 98 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEE---ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTS
T ss_pred hhhheeeEEEeecCCCCCEEEEE---cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCC
Confidence 4666665 33233333333 4699999998752 3345678899999999999998 8999999999
Q ss_pred cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeeccc
Q psy4579 152 TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231 (368)
Q Consensus 152 ~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 231 (368)
+|++||++++. ....+.+|...|. +++|+|+ +.+|++|+.|++|++||++.... .......+|.
T Consensus 99 ~v~lwd~~~~~-------~~~~~~~h~~~v~---~v~~sp~-~~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~ 162 (343)
T 2xzm_R 99 TLRLWDLRTGT-------TYKRFVGHQSEVY---SVAFSPD-NRQILSAGAEREIKLWNILGECK-----FSSAEKENHS 162 (343)
T ss_dssp EEEEEETTSSC-------EEEEEECCCSCEE---EEEECSS-TTEEEEEETTSCEEEEESSSCEE-----EECCTTTSCS
T ss_pred cEEEEECCCCc-------EEEEEcCCCCcEE---EEEECCC-CCEEEEEcCCCEEEEEeccCCce-----eeeecccCCC
Confidence 99999998864 5678899999996 9999998 89999999999999999974310 0011123688
Q ss_pred ccEeEEEEeee------------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCc
Q psy4579 232 AVVEDYSIHRL------------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH 299 (368)
Q Consensus 232 ~~v~~v~~~~~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h 299 (368)
..|.+++|+|. .+++++.|+. +.+|+ ........+. +|
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----------------------------i~iwd-~~~~~~~~~~-~h 212 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR----------------------------LKVWN-TNFQIRYTFK-AH 212 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE----------------------------EEEEE-TTTEEEEEEE-CC
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCE----------------------------EEEEc-CCCceeEEEc-Cc
Confidence 89999999873 2233333333 33344 1233344444 89
Q ss_pred ccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 300 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 300 ~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
...|.+++|+|++ .+|++|+.||+|++||++.. ..+... ..|...|.+++|+|..
T Consensus 213 ~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~---------~~~~~~-~~~~~~v~~v~~sp~~ 267 (343)
T 2xzm_R 213 ESNVNHLSISPNG-KYIATGGKDKKLLIWDILNL---------TYPQRE-FDAGSTINQIAFNPKL 267 (343)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTCEEEEEESSCC---------SSCSEE-EECSSCEEEEEECSSS
T ss_pred cccceEEEECCCC-CEEEEEcCCCeEEEEECCCC---------ccccee-ecCCCcEEEEEECCCC
Confidence 9999999999999 68889999999999999531 122222 2456679999999974
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-29 Score=234.93 Aligned_cols=293 Identities=10% Similarity=0.034 Sum_probs=191.5
Q ss_pred hhhhhhhhhhcCcchhee-ecc-cccccCceeeEecCC------cccccCCCCccccccCcceeeecc-----ccC----
Q psy4579 16 INEEYKIWKKNTPFLYDL-VMT-HALEWPSLTAQWLPD------VTSVQLPNEDAQFDASNYDTDKGT-----HTS---- 78 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~-~~~-~~~~~~~~~~~~~p~------~~~l~~~~~~~~~~~~~~~~~~~~-----~~~---- 78 (368)
.+...++|+..+..+... ... ....-++.+++|+|+ +..||+++.||++++|+....... ...
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 456678999876543211 111 112346889999997 578999999999977765322100 000
Q ss_pred C-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCee-e-eeccccCCCCceee--EecCCCCCeeEEEeCCCcE
Q psy4579 79 D-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ-F-DASNYDTDKGGYGL--SWNPSLNGYLLSASDDHTI 153 (368)
Q Consensus 79 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-~-~~~~~~h~~~v~~l--~~sp~~~~~lasg~~dg~v 153 (368)
. ......+.++.|.+.. . .+++ +.||+|++|++... . ...+..|.+.|+++ .|+|+++.+||||+.||+|
T Consensus 261 ~l~~h~~~v~sv~~s~~~-~-lasg---s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT-T-VVCG---FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp EECCTTTCEEEEEESSSS-E-EEEE---ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred EEEcCCCCEEEEEecCCC-e-EEEE---eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 1 1112347788885433 2 3333 46999999998743 2 23467899999999 5777754789999999999
Q ss_pred EEEeCCCCCCCCcccccceeeecccc--ceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeeccc
Q psy4579 154 CLWDINATPKENRVIDAKTIFTGHTA--VVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231 (368)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 231 (368)
+|||++++. +...+.+|.. .+ .+++|+|+ +..+++++.|++|++||++++ .+...+.+|.
T Consensus 336 klWD~~~~~-------~~~~~~~~~~~~~v---~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~-------~~~~~l~gH~ 397 (524)
T 2j04_B 336 YIFNPKDIA-------TTKTTVSRFRGSNL---VPVVYCPQ-IYSYIYSDGASSLRAVPSRAA-------FAVHPLVSRE 397 (524)
T ss_dssp EEECGGGHH-------HHCEEEEECSCCSC---CCEEEETT-TTEEEEECSSSEEEEEETTCT-------TCCEEEEECS
T ss_pred EEEECCCCC-------cccccccccccCcc---cceEeCCC-cCeEEEeCCCCcEEEEECccc-------ccceeeecCC
Confidence 999998753 3456667754 35 39999998 888999999999999999986 3456788899
Q ss_pred ccEeEEEEee--ecccccCCCCccceEEEEeecCCccc---------ccccccccCCCCCccccc------C-CCCceee
Q psy4579 232 AVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDA---------QFDASNYDTDKGDFGGFG------S-VSGKIEI 293 (368)
Q Consensus 232 ~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~------~-~~~~~~~ 293 (368)
..|++++|+| ..+++++.|+.+++|......-.... .+....+.+..+.+.+++ . .++....
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA 477 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence 9999999986 46778888888877643221111000 000111222211122222 1 1344444
Q ss_pred eeecCcccceeEEEEeCCCC--cEEEEecCCCeEEEEECCC
Q psy4579 294 EIKINHEGEVNRARYMPQNP--CVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 294 ~~~~~h~~~i~~~~~~p~~~--~~lasgs~Dg~i~iwd~~~ 332 (368)
.+. +|...|++|+|+|+++ .++|+|+.||+|+||+++.
T Consensus 478 ~l~-gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 478 KID-AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eec-CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 554 8999999999999963 4899999999999999973
No 51
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=4.8e-28 Score=220.36 Aligned_cols=278 Identities=14% Similarity=0.094 Sum_probs=197.0
Q ss_pred hheeecccccccCceeeEecCCccccc-CCCCccccccCcceeeecc--ccCC-CCCcEEEEEEecCCCccccccCCccc
Q psy4579 30 LYDLVMTHALEWPSLTAQWLPDVTSVQ-LPNEDAQFDASNYDTDKGT--HTSD-EQNHLLIASVQLPNEDAQFDASNYDT 105 (368)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~p~~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 105 (368)
+|+-+......|-...++++|+...++ +++.+|.+.+|+....... .... ......|.++.|.+.+....+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~--- 100 (402)
T 2aq5_A 24 CYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG--- 100 (402)
T ss_dssp SEESCCBCCCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEE---
T ss_pred cEecceeecCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEE---
Confidence 444444455678888899999977554 5789999977765332111 1111 12234588888866333333333
Q ss_pred CCCCcccCCCCCe--------eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee--e
Q psy4579 106 DKGGNVQLPNEDA--------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--T 175 (368)
Q Consensus 106 ~~~g~i~i~~~~~--------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~--~ 175 (368)
+.||.|++|+... .....+.+|...|.+++|+|++.++|++|+.||.|++||++++. ....+ .
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~ 173 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------AVLTLGPD 173 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------EEEEECTT
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------ccEEEecC
Confidence 3589999999864 33556778999999999999985699999999999999998764 45667 7
Q ss_pred ccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee-eccccc-EeEEEEee--eccccc---C
Q psy4579 176 GHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAV-VEDYSIHR--LILGTH---T 248 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-v~~v~~~~--~~~~~~---~ 248 (368)
+|...|. +++|+|+ +.+|++++.||.|++||++++ ..+..+ .+|... +.++.|++ .++.++ +
T Consensus 174 ~~~~~v~---~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 174 VHPDTIY---SVDWSRD-GALICTSCRDKRVRVIEPRKG-------TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp TCCSCEE---EEEECTT-SSCEEEEETTSEEEEEETTTT-------EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT
T ss_pred CCCCceE---EEEECCC-CCEEEEEecCCcEEEEeCCCC-------ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC
Confidence 8999996 9999998 899999999999999999986 345566 567665 78888875 222222 2
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce-eeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLV 327 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~i 327 (368)
.+ +.+.+|+..+++. .......|...|.+++|+|++..++++|+.||.|++
T Consensus 243 ~d----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 243 SE----------------------------RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CC----------------------------EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CC----------------------------ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 22 2233344444333 222333678899999999999666678889999999
Q ss_pred EECCCCCCCCCCCCCCCC-ceeeec--ccCceeeecceeeee
Q psy4579 328 FDYTKHPSKPDPNGECHP-DLRLRG--HQKEGLIEGTYNCYL 366 (368)
Q Consensus 328 wd~~~~~~~~~~~~~~~~-~~~~~g--h~~~V~~l~w~p~~~ 366 (368)
||++. ..+ +..+.+ |...|.+++|+|+..
T Consensus 295 ~d~~~----------~~~~~~~l~~~~~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 295 FEITS----------EAPFLHYLSMFSSKESQRGMGYMPKRG 326 (402)
T ss_dssp EEECS----------STTCEEEEEEECCSSCCSEEEECCGGG
T ss_pred EEecC----------CCcceEeecccccCCcccceEEecccc
Confidence 99975 222 334444 569999999999753
No 52
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=219.59 Aligned_cols=253 Identities=10% Similarity=0.044 Sum_probs=177.0
Q ss_pred cccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 37 HALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
..+.--+.+++|+|||+.+|++|.|++++ +...+.... .+...+..+.+.+.+ .++.+.+|+.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~----d~~~~~~l~--gh~~~v~~V~FsPdg-----------~~~~~~~~~~ 74 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG----QPKYAKDIN--CNSKNLFHVKEFPLE-----------FENKLDFELA 74 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE----EECCCSCCS--SBGGGTEEEEEECCC-----------CCCTTTTSCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee----cccccceec--CCCccEEEEEECCCC-----------CcceEEEEeC
Confidence 34555688899999999999999999985 333332221 122235555553322 3677777776
Q ss_pred CeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccc-----ceecceeeEEeC
Q psy4579 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA-----VVEVRYGLSWNP 191 (368)
Q Consensus 117 ~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~i~~~p 191 (368)
++...... .|...|.+++|||+| ..||+++.||+|++||..+ ....+. |.. .+. +++|||
T Consensus 75 ~~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~---svafSP 139 (588)
T 2j04_A 75 QQNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYH---CFEWNP 139 (588)
T ss_dssp CSSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEE---EEEECS
T ss_pred CCceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEE---EEEEcC
Confidence 65544443 458899999999999 9999999999999999543 334455 654 375 999999
Q ss_pred CCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee----ecccccEeEEEEeeecccccCCCCccceEEEEeecCCccc
Q psy4579 192 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF----TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA 267 (368)
Q Consensus 192 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (368)
+ +++||+|+.||+|+|||+.++.......-.+..+ .+|...|.+++|+|.-+++++.|+.+++|
T Consensus 140 D-G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlW----------- 207 (588)
T 2j04_A 140 I-ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSM----------- 207 (588)
T ss_dssp S-SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEE-----------
T ss_pred C-CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEE-----------
Confidence 9 9999999999999999998763211100123454 66888999999997324444445444443
Q ss_pred ccccccccCCCCCcccccCCCCce---eeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCC
Q psy4579 268 QFDASNYDTDKGDFGGFGSVSGKI---EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH 344 (368)
Q Consensus 268 ~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 344 (368)
+...+.. ...+..+|...|.+++|+ + ..||+++ |++|++||+.. .
T Consensus 208 -----------------d~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~-----------~ 255 (588)
T 2j04_A 208 -----------------TVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKN-----------Y 255 (588)
T ss_dssp -----------------CCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTT-----------T
T ss_pred -----------------ECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCC-----------C
Confidence 2222332 123333788999999999 5 5777876 69999999974 2
Q ss_pred Cceeee-cccCceeeecc--eeee
Q psy4579 345 PDLRLR-GHQKEGLIEGT--YNCY 365 (368)
Q Consensus 345 ~~~~~~-gh~~~V~~l~w--~p~~ 365 (368)
....+. ||.+.|++++| +|+.
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKES 279 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSC
T ss_pred eEEEEEcCCCceEEEEEeeeCCCC
Confidence 222333 99999999999 8874
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.9e-28 Score=222.25 Aligned_cols=270 Identities=7% Similarity=0.016 Sum_probs=190.6
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeec----cccCC-CCCcEEEEEEecCCC----c---cccccCCccc
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKG----THTSD-EQNHLLIASVQLPNE----D---AQFDASNYDT 105 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~i~~~~~~~~----~---~~~~~~~~~~ 105 (368)
.+.-++.+++|+| ++|++++.||.+++|+.+.... ..... ......|.++.|.+. + ..+...
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~---- 87 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT---- 87 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE----
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE----
Confidence 3567999999999 8999999999997776543320 01111 112234677777544 3 333322
Q ss_pred CCCCcccCCCCCeee------eeccccC-----CCCceeeEec----CCCCCe-eEEEeCCCcEEEEeCCC------CCC
Q psy4579 106 DKGGNVQLPNEDAQF------DASNYDT-----DKGGYGLSWN----PSLNGY-LLSASDDHTICLWDINA------TPK 163 (368)
Q Consensus 106 ~~~g~i~i~~~~~~~------~~~~~~h-----~~~v~~l~~s----p~~~~~-lasg~~dg~v~iwd~~~------~~~ 163 (368)
+.||.|++|+..... ...+..| ...|.+++|+ |++ .. |++|+.||.|++||+.+ ...
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccce
Confidence 358999999987644 5566677 5899999999 998 88 99999999999999987 432
Q ss_pred CCcccccceee-------eccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeec---c---
Q psy4579 164 ENRVIDAKTIF-------TGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG---H--- 230 (368)
Q Consensus 164 ~~~~~~~~~~~-------~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~--- 230 (368)
.. ..+...+ ..|...+. +++|+|+ + +|++++.||.|++||++++ .++..+.. |
T Consensus 167 ~~--~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~-~-~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 167 LN--WSPTLELQGTVESPMTPSQFAT---SVDISER-G-LIATGFNNGTVQISELSTL-------RPLYNFESQHSMINN 232 (397)
T ss_dssp TC--CCCEEEEEEEECCSSSSCCCCC---EEEECTT-S-EEEEECTTSEEEEEETTTT-------EEEEEEECCC---CC
T ss_pred ee--ccCcceeeeeeccccCCCCCce---EEEECCC-c-eEEEEeCCCcEEEEECCCC-------ceeEEEecccccccc
Confidence 10 1111155 34788885 9999998 7 9999999999999999886 45677777 8
Q ss_pred cccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecC----------
Q psy4579 231 TAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN---------- 298 (368)
Q Consensus 231 ~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---------- 298 (368)
...|.+++|++ ..+.+++.+ ...+.+.+|+..+++....+. +
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d-------------------------~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~ 286 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDS-------------------------NSFGCITLYETEFGERIGSLS-VPTHSSQASLG 286 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEE-------------------------TTEEEEEEEETTTCCEEEEEC-BC--------C
T ss_pred CCccceEEECCCCCEEEEEecC-------------------------CCCceEEEEECCCCcccceec-cCccccccccc
Confidence 89999999986 222222222 000224444444555555544 4
Q ss_pred ---cccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeee------cc---------------cC
Q psy4579 299 ---HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR------GH---------------QK 354 (368)
Q Consensus 299 ---h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------gh---------------~~ 354 (368)
|...|.+++|+|++ .+|++|+.||.|++||++. ..++..+. +| ..
T Consensus 287 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKT----------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp CBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT----------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCC----------CceeEEEecccCcccchhhhhccccccccccCC
Confidence 99999999999999 6888999999999999975 34455666 67 99
Q ss_pred ceeeecceeee
Q psy4579 355 EGLIEGTYNCY 365 (368)
Q Consensus 355 ~V~~l~w~p~~ 365 (368)
.|++++|+|..
T Consensus 356 ~v~~~~~~~~g 366 (397)
T 1sq9_A 356 GVFDVKFLKKG 366 (397)
T ss_dssp CEEEEEEECTT
T ss_pred ceeEEEecccc
Confidence 99999999973
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=7.5e-28 Score=211.93 Aligned_cols=230 Identities=16% Similarity=0.166 Sum_probs=167.1
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCCe---eeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA---QFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDI 158 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~---~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~ 158 (368)
..|.++.|.+.+..+..+ +.||+|++|+... .....+.+|.+.|++++|+|. + ++||+|+.|++|++||+
T Consensus 14 ~~V~~v~~s~~g~~lasg----s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATC----SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWRE 88 (316)
T ss_dssp CCEEEEEECGGGCEEEEE----ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECC
T ss_pred CeEEEeeEcCCCCEEEEE----eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEEC
Confidence 347788886554443332 3699999999753 235567899999999999863 6 89999999999999999
Q ss_pred CCCCCCCcccccceeeeccccceecceeeEEeCCC-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE
Q psy4579 159 NATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
+++.. .....+.+|...|. +++|+|+. +.+|++|+.|++|++||++.... +.....+.+|...|.++
T Consensus 89 ~~~~~-----~~~~~~~~h~~~V~---~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 89 ENGTW-----EKSHEHAGHDSSVN---SVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCNAV 156 (316)
T ss_dssp SSSCC-----CEEEEECCCSSCCC---EEEECCTTTCSCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBCCC
T ss_pred CCCcc-----eEEEEccCCCCceE---EEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcceE
Confidence 87532 13467789999996 99999973 57899999999999999986521 11234566799999999
Q ss_pred EEeee-------------------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCC---ceeeee
Q psy4579 238 SIHRL-------------------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG---KIEIEI 295 (368)
Q Consensus 238 ~~~~~-------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~ 295 (368)
+|+|. .+++++.|+. +.+|+...+ .....+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~----------------------------v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL----------------------------IKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSB----------------------------CCEEEECTTSCEEEEECC
T ss_pred EEccccCCccccccccccCccccceEEEecCCCe----------------------------EEEEEeCCCCccceeeec
Confidence 99874 2333333333 444444332 122333
Q ss_pred ecCcccceeEEEEeCCC---CcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 296 KINHEGEVNRARYMPQN---PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 296 ~~~h~~~i~~~~~~p~~---~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
.+|...|.+++|+|++ ..+||+|+.||+|++||++.... + ......+.+|.+.|++++|+|+.
T Consensus 209 -~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~-----~-~~~~~~~~~~~~~v~~v~~sp~g 274 (316)
T 3bg1_A 209 -EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-----N-TWSPKLLHKFNDVVWHVSWSITA 274 (316)
T ss_dssp -BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC-----C-CCBCCEEEECSSCEEEEEECTTT
T ss_pred -ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc-----c-chhhhhhhcCCCcEEEEEEcCCC
Confidence 3899999999999986 35889999999999999974210 0 11122457899999999999975
No 55
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=223.81 Aligned_cols=245 Identities=16% Similarity=0.109 Sum_probs=165.6
Q ss_pred ccCceeeEecCCcccccCCCCccccccCcceeeecc---------ccCCCCCc-------------EEEEEEecCCCc--
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT---------HTSDEQNH-------------LLIASVQLPNED-- 95 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~~i~~~~~~~~~-- 95 (368)
.-+|.+++|+|++++|++|+.||.+.+|+....... .....+.+ ..|.++.|.+..
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 468999999999999999999999977765432200 00011111 336667775543
Q ss_pred cccccCCcccCCCCcccCCCCCeeee-----------------------------------------eccccCCCCceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDAQFD-----------------------------------------ASNYDTDKGGYGL 134 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~~~~-----------------------------------------~~~~~h~~~v~~l 134 (368)
..+.++ +.||.|++|+...... ....+|...|+++
T Consensus 108 ~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 108 AQFLLS----TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SEEEEE----ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred ceEEEe----CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 223322 3589999999865222 1135799999999
Q ss_pred EecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccce-------eeeccccceecceeeEEeCCCCCeEEEeeCCCcEE
Q psy4579 135 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-------IFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTIC 207 (368)
Q Consensus 135 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~ 207 (368)
+|+|++ .+|++| .||.|++||+++... ... .+.+|...|. +++|+|++..+|++|+.||.|+
T Consensus 184 ~~~~~~-~~l~s~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~v~---~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 184 SINSDY-ETYLSA-DDLRINLWHLEITDR------SFNIVDIKPANMEELTEVIT---AAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp EECTTS-SEEEEE-CSSEEEEEETTEEEE------EEEEEECCCSSGGGCCCCEE---EEEECSSCTTEEEEEETTSCEE
T ss_pred EEcCCC-CEEEEe-CCCeEEEEECCCCCc------eeeeeecccccccccCcceE---EEEECCCCCcEEEEEeCCCeEE
Confidence 999998 899998 799999999984321 112 3568999996 9999998339999999999999
Q ss_pred EEECCCCCCCCccccceeeeecccc------------cEeEEEEeee--cccccCCCCccceEEEEeecCCccccccccc
Q psy4579 208 LWDINATPKENRVIDAKTIFTGHTA------------VVEDYSIHRL--ILGTHTSDEQNHLLIASVQLPNEDAQFDASN 273 (368)
Q Consensus 208 iwd~~~~~~~~~~~~~~~~~~~~~~------------~v~~v~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
+||++++.... .....+.+|.. .|.+++|++. .+.+++. +.++
T Consensus 253 iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~------------------- 309 (447)
T 3dw8_B 253 LCDMRASALCD---RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVK------------------- 309 (447)
T ss_dssp EEETTTCSSSC---TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEE-------------------
T ss_pred EEECcCCcccc---ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEE-------------------
Confidence 99999874211 12456666665 8999999862 2333332 3333
Q ss_pred ccCCCCCcccccCCC-CceeeeeecCcccc---------------eeEEEEeCCCCcEEEEecCCCeEEEEECCCC
Q psy4579 274 YDTDKGDFGGFGSVS-GKIEIEIKINHEGE---------------VNRARYMPQNPCVIATKTPSSDVLVFDYTKH 333 (368)
Q Consensus 274 ~d~~~~~~~~~~~~~-~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~ 333 (368)
+|+... ++....+. +|... +..++|+|++ .+|++|+.||.|++||+...
T Consensus 310 ---------iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 310 ---------VWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ---------EEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTC
T ss_pred ---------EEeCCCCccccceee-ccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCC
Confidence 333332 33333333 45431 3359999999 57789999999999999753
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-27 Score=217.10 Aligned_cols=260 Identities=13% Similarity=0.201 Sum_probs=189.9
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCC
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNE 94 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 94 (368)
.+...++|+..+......+... ...++.+++|+|++++|++|+.+|.+.+|+.. .+..... ......+.++.+.
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~-- 185 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE--SQTKLRTMAGHQARVGCLSWN-- 185 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEEE--
T ss_pred CCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECc--CCeEEEEecCCCCceEEEEEC--
Confidence 3556788888877655444332 56789999999999999999999999766543 3322222 1222345666662
Q ss_pred ccccccCCcccCCCCcccCCCCC--eeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccce
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNED--AQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~--~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~ 172 (368)
+ ...+.+ +.||.|++|+.. ......+..|...|.+++|+|++ .+|++|+.||.|++||++++. +..
T Consensus 186 ~-~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~-------~~~ 253 (401)
T 4aez_A 186 R-HVLSSG---SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI-------PKF 253 (401)
T ss_dssp T-TEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS-------EEE
T ss_pred C-CEEEEE---cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC-------ccE
Confidence 1 222222 468999999986 34566778899999999999998 999999999999999998754 567
Q ss_pred eeeccccceecceeeEEeCCCCCeEEEee--CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccc--
Q psy4579 173 IFTGHTAVVEVRYGLSWNPSLNGYLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGT-- 246 (368)
Q Consensus 173 ~~~~h~~~v~~~~~i~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~-- 246 (368)
.+.+|...|. +++|+|++..++++|+ .|+.|++||++++ .+...+. +...|.+++|++ ..+.+
T Consensus 254 ~~~~~~~~v~---~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 254 TKTNHNAAVK---AVAWCPWQSNLLATGGGTMDKQIHFWNAATG-------ARVNTVD-AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp EECCCSSCCC---EEEECTTSTTEEEEECCTTTCEEEEEETTTC-------CEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred EecCCcceEE---EEEECCCCCCEEEEecCCCCCEEEEEECCCC-------CEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence 7888999996 9999998677888876 8999999999887 3445554 667899999986 22222
Q ss_pred cCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeee-eecCcccceeEEEEeCCCCcEEEEecCCCeE
Q psy4579 247 HTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE-IKINHEGEVNRARYMPQNPCVIATKTPSSDV 325 (368)
Q Consensus 247 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i 325 (368)
+..++.+++|.. .++..... ...+|...|.+++|+|++ .+|++++.||.|
T Consensus 323 g~~dg~i~v~~~----------------------------~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i 373 (401)
T 4aez_A 323 GFPDNNLSIWSY----------------------------SSSGLTKQVDIPAHDTRVLYSALSPDG-RILSTAASDENL 373 (401)
T ss_dssp CTTTCEEEEEEE----------------------------ETTEEEEEEEEECCSSCCCEEEECTTS-SEEEEECTTSEE
T ss_pred ecCCCcEEEEec----------------------------CCccceeEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcE
Confidence 334444444432 23322222 123899999999999999 688899999999
Q ss_pred EEEECCC
Q psy4579 326 LVFDYTK 332 (368)
Q Consensus 326 ~iwd~~~ 332 (368)
++||+..
T Consensus 374 ~iw~~~~ 380 (401)
T 4aez_A 374 KFWRVYD 380 (401)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999975
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.6e-27 Score=214.08 Aligned_cols=249 Identities=10% Similarity=0.099 Sum_probs=180.4
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeecc--ccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT--HTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+-|+.+++|+|++++|++++.++.+.+|+. ..+. .... ......|.++.+.+.+..+... +.||.|++|+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd 80 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC----GTDRNAYVWT 80 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEE--ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE----ETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE----cCCCeEEEEE
Confidence 4568999999999999999999999966654 3332 2222 1122357777775544433332 3589999999
Q ss_pred CCeee---eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC
Q psy4579 116 EDAQF---DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 116 ~~~~~---~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~ 192 (368)
..... ......|...|.+++|+|++ .+|++|+.||.|++||++...... .......+|...+. +++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~~~~i~---~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW---VCKHIKKPIRSTVL---SLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE---EEEEECTTCCSCEE---EEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcce---eeeeeecccCCCee---EEEEcCC
Confidence 86532 34457799999999999998 999999999999999998764210 01233357888886 9999998
Q ss_pred CCCeEEEeeCCCcEEEEECCCCCCC-----------CccccceeeeecccccEeEEEEeee--cccccCCCCccceEEEE
Q psy4579 193 LNGYLLSASDDHTICLWDINATPKE-----------NRVIDAKTIFTGHTAVVEDYSIHRL--ILGTHTSDEQNHLLIAS 259 (368)
Q Consensus 193 ~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~d~~~~~~~~~ 259 (368)
+.+|++|+.||.|++||++..... .....++..+.+|...|.+++|++. .+.+++.|
T Consensus 154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 223 (372)
T 1k8k_C 154 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD--------- 223 (372)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT---------
T ss_pred -CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC---------
Confidence 899999999999999997532111 0011446677789999999999862 33333332
Q ss_pred eecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 260 VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 260 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+.+.+|+..+++....+. .|...|.+++|+|++ .+|++| .|+.|++|+++.
T Consensus 224 -------------------~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 224 -------------------STVCLADADKKMAVATLA-SETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -------------------TEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred -------------------CEEEEEECCCCceeEEEc-cCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence 234445555666666665 799999999999999 688776 999999999976
No 58
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.8e-28 Score=216.02 Aligned_cols=251 Identities=15% Similarity=0.144 Sum_probs=185.6
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCC-ccccccCCcccCCCCcccCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNE-DAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+.-++.+++|+|++++|++++.||.+.+|+.....+..... ......|.++.|.+. +....+++ +.||.|++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---~~dg~v~iwd 85 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVLIWK 85 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSCEEEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---ccCCEEEEEE
Confidence 356689999999999999999999999777664223333222 122345777887433 23333333 3589999999
Q ss_pred CCee---eeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 116 EDAQ---FDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 116 ~~~~---~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
.... .......|...|.+++|+|+ + .+|++++.||.|++||+...... ....+.+|...+. +++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~~~v~---~~~~~ 156 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT-----SPIIIDAHAIGVN---SASWA 156 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC-----CEEEEECCTTCEE---EEEEC
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce-----eeEEecCCCCceE---EEEEc
Confidence 8653 55667779999999999999 7 89999999999999999876432 3456778999996 99999
Q ss_pred CC------------CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-----cccccCCCCcc
Q psy4579 191 PS------------LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-----ILGTHTSDEQN 253 (368)
Q Consensus 191 p~------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~d~~~ 253 (368)
|. ++.+|++|+.||.|++||++.+... ..+...+.+|...|.+++|+|. .+++++.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT---YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTE---EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc---eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 93 3899999999999999999876422 1345677889999999999863 45666666655
Q ss_pred ceEEEEeecCCcccccccccccCCCCCcccccCCCCc----eeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEE
Q psy4579 254 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK----IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFD 329 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd 329 (368)
++|... ++. ........|...|.+++|+|++ .+|++++.||.|++|+
T Consensus 234 ~iwd~~----------------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 234 IIWTQD----------------------------NEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 284 (379)
T ss_dssp EEEEES----------------------------STTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred EEEeCC----------------------------CCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 555332 221 1111112588999999999999 5777889999999999
Q ss_pred CCC
Q psy4579 330 YTK 332 (368)
Q Consensus 330 ~~~ 332 (368)
++.
T Consensus 285 ~~~ 287 (379)
T 3jrp_A 285 ENL 287 (379)
T ss_dssp EEE
T ss_pred CCC
Confidence 974
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=1.3e-27 Score=221.58 Aligned_cols=279 Identities=11% Similarity=0.122 Sum_probs=206.2
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCC-C
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPN-E 94 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~ 94 (368)
+...++|+..+..+...+. .+..++.+++|+|++ .+++|+.||.+.+|+.+ .+..... ......|.++.+.+ .
T Consensus 141 dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK--KGCCTHVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEEESS
T ss_pred CCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC--CCcEEEEECCCCCccEEEEEecCC
Confidence 4567888887776655554 346689999999998 88999999999776554 3333222 11223455565532 2
Q ss_pred ccccccCCcccCCCCcccCCCCCeee------------------------eeccccCCCCceeeEecCCCCCeeEEEeCC
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDAQF------------------------DASNYDTDKGGYGLSWNPSLNGYLLSASDD 150 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~~~------------------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~d 150 (368)
+....+++ +.||.|++|+..... .....+|...|.++ ++++ +++++|+.|
T Consensus 216 ~~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d 289 (464)
T 3v7d_B 216 NIKYIVTG---SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYD 289 (464)
T ss_dssp SCEEEEEE---ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETT
T ss_pred CCCEEEEE---cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCC
Confidence 22223222 358999999976432 34566788888887 5666 899999999
Q ss_pred CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc
Q psy4579 151 HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH 230 (368)
Q Consensus 151 g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 230 (368)
|.|++||+.++. +...+.+|...+. +++|+|+ +.++++|+.||.|++||++++ .++..+.+|
T Consensus 290 ~~i~vwd~~~~~-------~~~~~~~~~~~v~---~~~~~~~-~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h 351 (464)
T 3v7d_B 290 NTLIVWDVAQMK-------CLYILSGHTDRIY---STIYDHE-RKRCISASMDTTIRIWDLENG-------ELMYTLQGH 351 (464)
T ss_dssp SCEEEEETTTTE-------EEEEECCCSSCEE---EEEEETT-TTEEEEEETTSCEEEEETTTT-------EEEEEECCC
T ss_pred CeEEEEECCCCc-------EEEEecCCCCCEE---EEEEcCC-CCEEEEEeCCCcEEEEECCCC-------cEEEEEeCC
Confidence 999999998764 5678889999995 9999998 899999999999999999887 567788899
Q ss_pred cccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 231 TAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 231 ~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
...|.+++|++..+.+++.|+.+++|. ..++...... .|...+..++|+|
T Consensus 352 ~~~v~~~~~~~~~l~s~s~dg~v~vwd----------------------------~~~~~~~~~~--~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 352 TALVGLLRLSDKFLVSAAADGSIRGWD----------------------------ANDYSRKFSY--HHTNLSAITTFYV 401 (464)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEE----------------------------TTTCCEEEEE--ECTTCCCEEEEEE
T ss_pred CCcEEEEEEcCCEEEEEeCCCcEEEEE----------------------------CCCCceeeee--cCCCCccEEEEEe
Confidence 999999999987777777666655542 2223333332 4677888899999
Q ss_pred CCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCcee-eecccCceeeecceeeee
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~w~p~~~ 366 (368)
++ .++++|+ ||.|++||++. ...+.. +.+|.+.|++++|++..+
T Consensus 402 ~~-~~l~~~~-dg~i~iwd~~~----------g~~~~~~~~~~~~~v~~v~~~~~~l 446 (464)
T 3v7d_B 402 SD-NILVSGS-ENQFNIYNLRS----------GKLVHANILKDADQIWSVNFKGKTL 446 (464)
T ss_dssp CS-SEEEEEE-TTEEEEEETTT----------CCEEESCTTTTCSEEEEEEEETTEE
T ss_pred CC-CEEEEec-CCeEEEEECCC----------CcEEehhhccCCCcEEEEEecCCEE
Confidence 99 6887887 99999999975 233332 568899999999986553
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=4.3e-28 Score=221.62 Aligned_cols=292 Identities=9% Similarity=0.018 Sum_probs=200.0
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 95 (368)
+...++|+.........+..+ -.+....|+|++++|++++.|+.+.+|+... +...... .....|.++.+.+.+
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~ 151 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRA---DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSG 151 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSC---CEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTS
T ss_pred CCcEEEEEecccceeeEEecC---CceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCC
Confidence 445677877766554444333 2234457899999999999999997776543 3322221 223457888886554
Q ss_pred cccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
..+..+ +.||.|++|+... +....+.+|...|++++|+|++ .+|++|+.||.|++||++++. ....+
T Consensus 152 ~~l~s~----s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~-------~~~~~ 219 (420)
T 3vl1_A 152 EALISS----SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGT-------TIHTF 219 (420)
T ss_dssp SEEEEE----ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE-------EEEEE
T ss_pred CEEEEE----eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCc-------eeEEe
Confidence 433332 3589999999864 5566677899999999999998 999999999999999998764 33444
Q ss_pred ecc------------------------ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc
Q psy4579 175 TGH------------------------TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH 230 (368)
Q Consensus 175 ~~h------------------------~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 230 (368)
..| ...+. +++|+|+ +.+|++|+.||.|++||++++.. ......+|
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~---~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~ 289 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKN---NLEFGTY-GKYVIAGHVSGVITVHNVFSKEQ------TIQLPSKF 289 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC---TTCSSCT-TEEEEEEETTSCEEEEETTTCCE------EEEECCTT
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCccc---ceEEcCC-CCEEEEEcCCCeEEEEECCCCce------eEEccccc
Confidence 432 34443 6778888 89999999999999999988731 22333458
Q ss_pred cccEeEEEEeee---cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce-eeeeecCcccceeEE
Q psy4579 231 TAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI-EIEIKINHEGEVNRA 306 (368)
Q Consensus 231 ~~~v~~v~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~ 306 (368)
...|.+++|++. ++.+++.|+.+++ |+..+++. ...+...|...|.++
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~v----------------------------wd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQ----------------------------WDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEE----------------------------EETTCTTSCSEEEEESTTSCEEEE
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEE----------------------------EEcCCCcCchhhhhccCCCCceEE
Confidence 889999999863 4555554444443 33333433 334443477788888
Q ss_pred EEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeeee
Q psy4579 307 RYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 307 ~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~~ 366 (368)
.| |++ .+|++++.||+|++||+....... ..........+.+|.+.|.+++|+|...
T Consensus 342 ~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 342 YF-AAG-ALFVSSGFDTSIKLDIISDPESER-PAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EE-ETT-EEEEEETTTEEEEEEEECCTTCCS-CEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred Ee-CCC-CEEEEecCCccEEEEeccCCCCCc-cceeccCccEEccCCcceEEEEEccCCC
Confidence 55 466 588899999999999997632111 1111122234678999999999999753
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=4.1e-27 Score=208.24 Aligned_cols=264 Identities=13% Similarity=0.123 Sum_probs=196.1
Q ss_pred cccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC----CCCcEEEEEEecCCCccccccCCcccCCCCccc
Q psy4579 37 HALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD----EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQ 112 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~ 112 (368)
..+..++.+++|+|+++++++++ ++.+.+|+........... ......+.++.+.+.+..+... +.+|.|+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~ 122 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEASTLS 122 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESSSEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE----cCCCcEE
Confidence 34677899999999999999998 9998776554321111111 1233457788886655444332 3589999
Q ss_pred CCCCCee---eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEE
Q psy4579 113 LPNEDAQ---FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSW 189 (368)
Q Consensus 113 i~~~~~~---~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~ 189 (368)
+|+.... ....+..|...|.+++|+|++ ++|++++.||.|++||++++. ....+.+|...+. +++|
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~-------~~~~~~~~~~~i~---~~~~ 191 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQT-------LVRQFQGHTDGAS---CIDI 191 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEE---EEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCc-------eeeeeecccCceE---EEEE
Confidence 9998753 355667799999999999998 899999999999999998763 5677888999996 9999
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEE----------
Q psy4579 190 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLI---------- 257 (368)
Q Consensus 190 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~---------- 257 (368)
+|+ +.+|++++.||.|++||++++. ....+ .+...+.+++|++ ..+.+++.++.+++|.
T Consensus 192 ~~~-~~~l~~~~~dg~i~~~d~~~~~-------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 192 SND-GTKLWTGGLDNTVRSWDLREGR-------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp CTT-SSEEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred CCC-CCEEEEEecCCcEEEEECCCCc-------eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence 998 8999999999999999998862 33333 3677899999975 3555666666666653
Q ss_pred ------EEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 258 ------ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 258 ------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
..+.+.++...+.... ..+.+.+|+..+++..... .|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDD-KYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTS-CEEEEEETTSCEEEEEEE
T ss_pred CCccceeEEEECCCCCEEEEec---CCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCC-CEEEEecCCCeEEEEEEe
Confidence 2233333333332222 3456888888888776443 589999999999999 678899999999999973
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.9e-27 Score=231.44 Aligned_cols=270 Identities=15% Similarity=0.136 Sum_probs=193.4
Q ss_pred ccccCceeeEecCCc-ccccCCCCccccccCcceeee---ccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCccc
Q psy4579 38 ALEWPSLTAQWLPDV-TSVQLPNEDAQFDASNYDTDK---GTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQ 112 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~ 112 (368)
.+.-+|.+++|+|++ +.|++|+.|+.+++|+..... +..... ..+...|.++.+.+++..+... +.||.|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg----s~Dg~v~ 455 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG----SWDGELR 455 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEE----eCCCcEE
Confidence 456789999999875 689999999999777654221 111111 1122347777786655444332 3589999
Q ss_pred CCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeC
Q psy4579 113 LPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191 (368)
Q Consensus 113 i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p 191 (368)
+|+... .....+.+|.+.|++++|+|++ .+|++|+.|++|++||+...... .......+|...|. +++|+|
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~----~~~~~~~~h~~~v~---~~~~~~ 527 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY----TISEGGEGHRDWVS---CVRFSP 527 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE----EECSSTTSCSSCEE---EEEECS
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce----eeccCCCCCCCcEE---EEEEeC
Confidence 999864 5566778899999999999998 99999999999999998653110 01112246888886 999999
Q ss_pred CC-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEE----------
Q psy4579 192 SL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIA---------- 258 (368)
Q Consensus 192 ~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~---------- 258 (368)
+. ...|++|+.|++|++||+++. .....+.+|...|++++|++ ..+++++.|+.+++|..
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNC-------KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred CCCcceEEEEeCCCeEEEEECCCC-------cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 73 258999999999999999886 45677889999999999986 57888888999988842
Q ss_pred ------EeecCCcccccccccccCCCCCcccccCCCCceeeeeecC------------------cccceeEEEEeCCCCc
Q psy4579 259 ------SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN------------------HEGEVNRARYMPQNPC 314 (368)
Q Consensus 259 ------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------------------h~~~i~~~~~~p~~~~ 314 (368)
.+.+.++...+ +.. ..+.+.+|+..+++....+... +...+++++|+|++ .
T Consensus 601 ~~~~v~~~~~sp~~~~l-~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~ 675 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWL-CAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-S 675 (694)
T ss_dssp CSSCEEEEEECSSSSEE-EEE---ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-S
T ss_pred CCCcEEEEEEcCCCcEE-EEE---cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-C
Confidence 22222222111 111 1234778888887766544311 11237899999999 6
Q ss_pred EEEEecCCCeEEEEECC
Q psy4579 315 VIATKTPSSDVLVFDYT 331 (368)
Q Consensus 315 ~lasgs~Dg~i~iwd~~ 331 (368)
+|+||+.||+|++||+.
T Consensus 676 ~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 676 TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred EEEEEcCCCeEEEEecc
Confidence 88899999999999986
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.8e-27 Score=211.02 Aligned_cols=272 Identities=11% Similarity=0.084 Sum_probs=181.7
Q ss_pred hhhhhhhhhhcCcchheeec---ccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecC
Q psy4579 16 INEEYKIWKKNTPFLYDLVM---THALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLP 92 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 92 (368)
.+...++|+........... ...+..++.+++|+|++++|++++.|+.+.+|............... ..+....+.
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-KDVLSVAFS 137 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEC
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC-CceeEEEEe
Confidence 45678899876543211111 12245689999999999999999999998666544332222222211 122333343
Q ss_pred CCccccccCCcccCCCCcccCCCCCe--eeeeccccCCCCceeeEecCCCC-CeeEEEeCCCcEEEEeCCCCCCCCcccc
Q psy4579 93 NEDAQFDASNYDTDKGGNVQLPNEDA--QFDASNYDTDKGGYGLSWNPSLN-GYLLSASDDHTICLWDINATPKENRVID 169 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~i~i~~~~~--~~~~~~~~h~~~v~~l~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~~~~ 169 (368)
+....+... +.||.+++|+... .......+|...|.+++|++++. .++++++.|+.|++||+.+..
T Consensus 138 ~~~~~l~s~----s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~------- 206 (340)
T 4aow_A 138 SDNRQIVSG----SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK------- 206 (340)
T ss_dssp TTSSCEEEE----ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-------
T ss_pred ecCccceee----cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-------
Confidence 333333222 3589999999865 33455678999999999998753 467899999999999998764
Q ss_pred cceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-cccccC
Q psy4579 170 AKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-ILGTHT 248 (368)
Q Consensus 170 ~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~ 248 (368)
....+.+|.+.|. +++|+|+ +.+|++|+.||.|++||+++. .++..+. +...|.++.|++. .+.+++
T Consensus 207 ~~~~~~~h~~~v~---~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 207 LKTNHIGHTGYLN---TVTVSPD-GSLCASGGKDGQAMLWDLNEG-------KHLYTLD-GGDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp EEEEECCCSSCEE---EEEECTT-SSEEEEEETTCEEEEEETTTT-------EEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred eeeEecCCCCcEE---EEEECCC-CCEEEEEeCCCeEEEEEeccC-------ceeeeec-CCceEEeeecCCCCceeecc
Confidence 5678889999996 9999998 999999999999999999886 3455555 4467889999762 222333
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF 328 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iw 328 (368)
.++.+++|.. +.+.. .... ..........+|...|++++|+|++ .+|+||+.||+|+||
T Consensus 275 ~d~~i~iwd~------------------~~~~~-~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 275 TGPSIKIWDL------------------EGKII-VDEL-KQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVW 333 (340)
T ss_dssp ETTEEEEEET------------------TTTEE-EEEE-CCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred CCCEEEEEEC------------------CCCeE-EEec-cccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEE
Confidence 3444443321 11000 0000 0111111223789999999999999 688899999999999
Q ss_pred ECCC
Q psy4579 329 DYTK 332 (368)
Q Consensus 329 d~~~ 332 (368)
|+++
T Consensus 334 ~~~t 337 (340)
T 4aow_A 334 QVTI 337 (340)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 9975
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=9.9e-28 Score=216.13 Aligned_cols=293 Identities=10% Similarity=0.087 Sum_probs=184.5
Q ss_pred hhhhhhhhhcCc--chheeecccccccCceeeEecCCcccccCCCCccccccCcceeee-ccccCC-CCCcEEEEEEecC
Q psy4579 17 NEEYKIWKKNTP--FLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDK-GTHTSD-EQNHLLIASVQLP 92 (368)
Q Consensus 17 ~~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~ 92 (368)
+...++|+.... .+...+. .+..++.+++|+|++++|++++.|+.+++|+..... ...... ......|.++.+.
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred CCEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence 456788888765 3333333 346689999999999999999999999777654432 001111 2223457888886
Q ss_pred CCccccccCCcccCCCCcccCCCCCeee----eecccc-CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCC--
Q psy4579 93 NEDAQFDASNYDTDKGGNVQLPNEDAQF----DASNYD-TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN-- 165 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-- 165 (368)
+++..+... +.||.|++|+.+... ...+.. |...|++++|+|++ .+|++|+.||.|++||++......
T Consensus 110 ~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 110 PNEDKFAVG----SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp TTSSCCEEE----ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred CCCCEEEEE----ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCc
Confidence 654444332 358999999987643 455556 99999999999998 999999999999999996432111
Q ss_pred ---------cccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeE
Q psy4579 166 ---------RVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVED 236 (368)
Q Consensus 166 ---------~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (368)
....+...+ +|...|. +++|+|+ +.+|++++.||.|++||++++.... ..+..+.+|...|.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~---~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~v~~ 256 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVH---AVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPP---RALITVKLSQLPLRS 256 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEE---EEEECTT-SSCEEEEETTTEEC-CEECSTTSCE---EECCCEECSSSCEEE
T ss_pred cccccccccchhhhhhcc-cCCceEE---EEEECCC-CCEEEEEeCCCcEEEEECCCCCCcc---eeeEeecCCCCceEE
Confidence 012234455 8999996 9999998 8999999999999999999874311 115677889999999
Q ss_pred EEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCC---------------------------CCcccccCC
Q psy4579 237 YSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK---------------------------GDFGGFGSV 287 (368)
Q Consensus 237 v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~---------------------------~~~~~~~~~ 287 (368)
++|++ .++++++.++.. +|-... .. .......+... ..+...+..
T Consensus 257 ~~~s~~~~~l~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (377)
T 3dwl_C 257 LLWANESAIVAAGYNYSPI-LLQGNE----SG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLK 330 (377)
T ss_dssp EEEEETTEEEEEESSSSEE-EECCCC--------CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------
T ss_pred EEEcCCCCEEEEEcCCcEE-EEEeCC----Cc-eEEEeeecccccccccccccccccccccccccccccccccccchhhc
Confidence 99986 345555443322 332110 00 00000000000 000000000
Q ss_pred C-CceeeeeecCcccceeEEEEeCCCCc---EEEEecCCCeEEEEEC
Q psy4579 288 S-GKIEIEIKINHEGEVNRARYMPQNPC---VIATKTPSSDVLVFDY 330 (368)
Q Consensus 288 ~-~~~~~~~~~~h~~~i~~~~~~p~~~~---~lasgs~Dg~i~iwd~ 330 (368)
. ..........|...|+++++.+.... .|+|||.||+|++||+
T Consensus 331 g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 331 GSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 00111222369999999998775534 6889999999999985
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.1e-27 Score=210.32 Aligned_cols=258 Identities=13% Similarity=0.177 Sum_probs=184.8
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 95 (368)
+...++|......+...+.. ..-++.+++|+|++++|++++.|+.+.+|+.+ .+...... .....+.++.+.+..
T Consensus 44 dg~i~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSNLLVSASDDKTLKIWDVS--SGKCLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp TSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCcccchhhcc--CCCceEEEEEcCCCCEEEEECCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCCC
Confidence 45677888776655554443 35579999999999999999999999776543 33222221 112346667775544
Q ss_pred cccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
..+... +.||.|++|+... +....+..|..+|.+++|+|++ .+|++|+.||.|++||++++. ....+
T Consensus 120 ~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~-------~~~~~ 187 (312)
T 4ery_A 120 NLIVSG----SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ-------CLKTL 187 (312)
T ss_dssp SEEEEE----ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC-------EEEEE
T ss_pred CEEEEE----eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-------eeeEE
Confidence 433332 3589999999864 5566677899999999999998 899999999999999998764 23333
Q ss_pred -eccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE--EEe---eecccccC
Q psy4579 175 -TGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY--SIH---RLILGTHT 248 (368)
Q Consensus 175 -~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~---~~~~~~~~ 248 (368)
..+..++. .++|+|+ +.+|++++.||.|++||++++ .++..+.+|...+.++ .+. ...+.+++
T Consensus 188 ~~~~~~~~~---~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 188 IDDDNPPVS---FVKFSPN-GKYILAATLDNTLKLWDYSKG-------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp CCSSCCCEE---EEEECTT-SSEEEEEETTTEEEEEETTTT-------EEEEEECSSCCSSSCCCEEEECSSSCEEEECC
T ss_pred eccCCCceE---EEEECCC-CCEEEEEcCCCeEEEEECCCC-------cEEEEEEecCCceEEEEEEEEeCCCcEEEEEC
Confidence 34566675 8999999 899999999999999999886 4456677776543322 222 12233333
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEec--CCCeEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKT--PSSDVL 326 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs--~Dg~i~ 326 (368)
.| +.+.+|+..+++....+. +|...|.+++|+|++ .+|++++ .|++|+
T Consensus 257 ~d----------------------------g~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 257 ED----------------------------NLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTE-NIIASAALENDKTIK 306 (312)
T ss_dssp TT----------------------------SCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSS-SEEEEEECTTTCCEE
T ss_pred CC----------------------------CEEEEEECCCchhhhhhh-ccCCcEEEEeecCcC-CceEEEEccCCccEE
Confidence 33 334555555666666665 899999999999999 5777876 699999
Q ss_pred EEECC
Q psy4579 327 VFDYT 331 (368)
Q Consensus 327 iwd~~ 331 (368)
+|+..
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99974
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=219.53 Aligned_cols=261 Identities=12% Similarity=0.128 Sum_probs=177.0
Q ss_pred cccCceeeEecC-CcccccCCCCccccccCcceeee-ccccC-C--CCCcEEEEEEecCCCccccccCCcccCCCCcccC
Q psy4579 39 LEWPSLTAQWLP-DVTSVQLPNEDAQFDASNYDTDK-GTHTS-D--EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQL 113 (368)
Q Consensus 39 ~~~~~~~~~~~p-~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i 113 (368)
+.-+|.+++|+| ++++|++|+.||.+++|+..... +.... . ......|.++.+.+....+..+ +.||.|++
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~dg~i~v 137 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS----SKDGQIIV 137 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE----ETTSEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE----eCCCEEEE
Confidence 456899999999 99999999999999777654311 21111 1 1123347788886544433332 35899999
Q ss_pred CCCC----eeeeec----------ccc--CCCCceeeE--ecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee
Q psy4579 114 PNED----AQFDAS----------NYD--TDKGGYGLS--WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 114 ~~~~----~~~~~~----------~~~--h~~~v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
|+.+ ++.... +.. +...+.++. ++|++ .+|++|+.||.|++||++++. +...+.
T Consensus 138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-------~~~~~~ 209 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE-------RLQIIE 209 (437)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC-------EEEEEE
T ss_pred EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe-------eeEEEc
Confidence 9984 111111 112 666777777 55777 899999999999999998864 567777
Q ss_pred c--cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeee-cccccEeEEEEee------ecccc
Q psy4579 176 G--HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEDYSIHR------LILGT 246 (368)
Q Consensus 176 ~--h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~~------~~~~~ 246 (368)
+ |.+.|. +++|+|+ +.+|++|+.||.|++||++++ .++..+. .|...|.+++|++ ..+++
T Consensus 210 ~~~h~~~v~---~~~~s~~-~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 210 NSPRHGAVS---SICIDEE-CCVLILGTTRGIIDIWDIRFN-------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp CCGGGCCEE---EEEECTT-SCEEEEEETTSCEEEEETTTT-------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred cCCCCCceE---EEEECCC-CCEEEEEcCCCeEEEEEcCCc-------cEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 7 888996 9999999 999999999999999999986 4456654 6778999998875 26777
Q ss_pred cCCCCccceEEEEee-----cCCcccccccccccCCCCCcccccCCCCceeeeee-cCcccceeEEEEeCCCCcEEEEec
Q psy4579 247 HTSDEQNHLLIASVQ-----LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKT 320 (368)
Q Consensus 247 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~lasgs 320 (368)
++.|+.+++|..... +...........+......+ ....+. ..|...|++++|+ ++ .+|++|+
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~ 347 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL---------EELNFCGIRSLNALSTISVS-ND-KILLTDE 347 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG---------GGCCCCCCCSGGGGCCEEEE-TT-EEEEEEG
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc---------ccceecccccCCceEEEEEC-Cc-eEEEecC
Confidence 777777777643200 00000000001111100000 000111 1388999999999 66 6888999
Q ss_pred CCCeEEEEECCCC
Q psy4579 321 PSSDVLVFDYTKH 333 (368)
Q Consensus 321 ~Dg~i~iwd~~~~ 333 (368)
.||.|++||++..
T Consensus 348 ~d~~i~~wd~~~~ 360 (437)
T 3gre_A 348 ATSSIVMFSLNEL 360 (437)
T ss_dssp GGTEEEEEETTCG
T ss_pred CCCeEEEEECCCc
Confidence 9999999999763
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.8e-27 Score=245.78 Aligned_cols=314 Identities=13% Similarity=0.154 Sum_probs=229.2
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCC-
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNE- 94 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~- 94 (368)
+...++|+..+......+.. +.-++.+++|+|++++|++++.|+.+.+|+.. .+..... ......+.++.+.+.
T Consensus 636 d~~i~vw~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKA--HEDEVLCCAFSSDDSYIATCSADKKVKIWDSA--TGKLVHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCeEEEEECCCCCEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCeEEEEECC--CCceEEEEcCCCCcEEEEEEecCC
Confidence 45678898888766655543 45689999999999999999999999766543 3333222 112234667777443
Q ss_pred ccccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcc------
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV------ 167 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~------ 167 (368)
+..+.+++ +.||.|++|+... .....+.+|.+.|++++|+|++ ..|++|+.||+|++||+.++......
T Consensus 712 ~~~~l~sg---~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 712 NHLLLATG---SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp SCCEEEEE---ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred CceEEEEE---eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 33333333 4689999999865 5566778899999999999998 89999999999999998765211000
Q ss_pred -----------------------------------------cccce-eeeccccceecceeeEEeCCCCCeEEEeeCCCc
Q psy4579 168 -----------------------------------------IDAKT-IFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205 (368)
Q Consensus 168 -----------------------------------------~~~~~-~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~ 205 (368)
..... ...+|...+. +++|+|+ +.++++++.||.
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~---~~~~sp~-~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ---YCDFSPY-DHLAVIALSQYC 863 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC---EEEECSS-TTEEEEECSSSC
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE---EEEEcCC-CCEEEEEeCCCe
Confidence 00011 1226777885 9999998 999999999999
Q ss_pred EEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEE------------------------
Q psy4579 206 ICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIAS------------------------ 259 (368)
Q Consensus 206 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~------------------------ 259 (368)
|++||+.++ .....+.+|...|.+++|++ ..+.+++.|+.+++|...
T Consensus 864 v~vwd~~~~-------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 864 VELWNIDSR-------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp EEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EEEEEcCCC-------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999999886 45677889999999999986 467777888888887421
Q ss_pred ------------------------------eecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEe
Q psy4579 260 ------------------------------VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYM 309 (368)
Q Consensus 260 ------------------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 309 (368)
+.+.+....+.+ ....|.+.+|+..+++...... +|...|.+++|+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~---g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s 1012 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF---GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFT 1012 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE---EETTSCCEEEETTTTSCEEECC-CCSSCCCCEEEC
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE---EcCCCCEEEEEcCCCceeeecc-cCCCceEEEEEC
Confidence 111121111111 1234667888888887766665 899999999999
Q ss_pred CCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 310 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 310 p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|++ .+|++++.||.|++||+... ....+.+|...|.+++|+|..
T Consensus 1013 ~dg-~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 1013 ADG-KTLISSSEDSVIQVWNWQTG-----------DYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp SSS-SCEEEECSSSBEEEEETTTT-----------EEECCBCCSSCEEEEEECSSS
T ss_pred CCC-CEEEEEcCCCEEEEEECCCC-----------ceEEEecCCCcEEEEEEcCCC
Confidence 999 57779999999999999751 122456899999999999853
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.1e-27 Score=216.13 Aligned_cols=263 Identities=17% Similarity=0.219 Sum_probs=192.3
Q ss_pred ccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe-
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA- 118 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~- 118 (368)
+..+.+++|++ ..+++++.|+.+.+|+.....-...........|.++.|.+.+..+.++ +.||.|++|+...
T Consensus 93 ~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 93 DYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVG----LGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEE----ETTSCEEEEETTTC
T ss_pred CceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEE----CCCCeEEEEECcCC
Confidence 34466688876 4577788999986665543222222222234558888886654443332 3589999999764
Q ss_pred eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE
Q psy4579 119 QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 119 ~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
+....+.+|...|.+++|+ + ..|++|+.||.|++||++.... ....+.+|.+.|. +++|+|+ +.+|+
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~---~~~~~~~-~~~l~ 233 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANH------QIGTLQGHSSEVC---GLAWRSD-GLQLA 233 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSC------EEEEEECCSSCEE---EEEECTT-SSEEE
T ss_pred eEEEEecCCCCceEEEEEC--C-CEEEEEcCCCCEEEEecccCcc------eeeEEcCCCCCee---EEEEcCC-CCEEE
Confidence 5566677899999999995 3 7999999999999999985432 4678889999996 9999998 99999
Q ss_pred EeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEEEeecCCccccccccccc
Q psy4579 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 275 (368)
Q Consensus 199 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d 275 (368)
+|+.||.|++||++++ .+...+.+|...|.+++|+| .++.++++
T Consensus 234 s~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-------------------------- 280 (401)
T 4aez_A 234 SGGNDNVVQIWDARSS-------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-------------------------- 280 (401)
T ss_dssp EEETTSCEEEEETTCS-------SEEEEECCCSSCCCEEEECTTSTTEEEEECC--------------------------
T ss_pred EEeCCCeEEEccCCCC-------CccEEecCCcceEEEEEECCCCCCEEEEecC--------------------------
Confidence 9999999999999886 45677888999999999986 23333221
Q ss_pred CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE--ecCCCeEEEEECCCCCCCCCCCCCCCCceeeeccc
Q psy4579 276 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 353 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las--gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~ 353 (368)
...+.+.+|+..+++....+ .|...|.+++|+|++. +|++ |+.||.|++||++. +.......+.+|.
T Consensus 281 s~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~--------~~~~~~~~~~~h~ 349 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSS--------SGLTKQVDIPAHD 349 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEET--------TEEEEEEEEECCS
T ss_pred CCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCC--------ccceeEEEecCCC
Confidence 11233444455556555554 3678899999999995 5556 56899999999975 2233444577999
Q ss_pred Cceeeecceeee
Q psy4579 354 KEGLIEGTYNCY 365 (368)
Q Consensus 354 ~~V~~l~w~p~~ 365 (368)
..|.+++|+|+.
T Consensus 350 ~~v~~~~~s~dg 361 (401)
T 4aez_A 350 TRVLYSALSPDG 361 (401)
T ss_dssp SCCCEEEECTTS
T ss_pred CCEEEEEECCCC
Confidence 999999999875
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.8e-27 Score=211.01 Aligned_cols=280 Identities=15% Similarity=0.115 Sum_probs=190.0
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeecc--ccCC-CCCcEEEEEEecCCC-ccccccCCcccCCCCcccCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT--HTSD-EQNHLLIASVQLPNE-DAQFDASNYDTDKGGNVQLP 114 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~g~i~i~ 114 (368)
+.-+|.+++|+|++++|++++.||.+++|+....... .... ......|.++.|.+. +....+++ +.||.|++|
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~---~~dg~v~vw 86 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA---SYDKTVKLW 86 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE---ETTSCEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE---cCCCeEEEE
Confidence 4568999999999999999999999977765432211 1111 112335777888553 23333333 358999999
Q ss_pred CCCe----------eeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCcccc------cceeeec
Q psy4579 115 NEDA----------QFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVID------AKTIFTG 176 (368)
Q Consensus 115 ~~~~----------~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~ 176 (368)
+... +....+..|...|.+++|+|+ + .+|++++.||.|++||+++......... ......+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 9865 445667789999999999999 8 8999999999999999987653211000 0011125
Q ss_pred cccceecceeeEEeCC--CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee------cccccC
Q psy4579 177 HTAVVEVRYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL------ILGTHT 248 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~~~~ 248 (368)
|...+. +++|+|+ .+.++++++.|+.+.+|+...+.. .....+.+|...|.+++|+|. ++++++
T Consensus 166 ~~~~~~---~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 166 HLQSDF---CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-----HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSCCCE---EEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-----EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccccee---EEEeccCCCCCcEEEEecCCCcEEEEccCCCce-----eeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 677774 9999996 478999999999998888766531 335677889999999999864 688899
Q ss_pred CCCccceEEEEeecCCccccc----------------cccc-cc-CCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 249 SDEQNHLLIASVQLPNEDAQF----------------DASN-YD-TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~----------------~~~~-~d-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
.|+.+++|............- .... .+ ........++....+....+. +|...|++++|+|
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNL 316 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcC
Confidence 999999987664211100000 0000 00 000111222222334444444 8999999999999
Q ss_pred CCCcEEEEecCCCeEEEEECCC
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++ .+|++|+.||.|++||+..
T Consensus 317 ~~-~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 317 TG-TILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp SS-CCEEEEETTSCEEEEEECT
T ss_pred CC-CEEEEecCCCcEEEEecCc
Confidence 99 6888999999999999975
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=208.21 Aligned_cols=264 Identities=14% Similarity=0.213 Sum_probs=189.9
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCC-cEEEEEEecCCC
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQN-HLLIASVQLPNE 94 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 94 (368)
.+...++|+..+..+...+..+....+|.+++|+|++++|++|+.|+.+++|+.. .+........ ...+..+...
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~~~h~~~~~~~~~~-- 118 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWN-- 118 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEE--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC--CceeEEEecCccceEEEeecC--
Confidence 3667899999998877777777777789999999999999999999999776544 3332222111 1112222221
Q ss_pred ccccccCCcccCCCCcccCCCCCe--eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccce
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDA--QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~--~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~ 172 (368)
+ ...+++ +.++.+.+|+... .....+.+|...+.++.+++++ .+|++++.||+|++||+++++... ....
T Consensus 119 ~-~~l~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~---~~~~ 190 (318)
T 4ggc_A 119 S-YILSSG---SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGW---VPLQ 190 (318)
T ss_dssp T-TEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBS---CCSE
T ss_pred C-CEEEEE---ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccc---ccee
Confidence 1 122222 3578888877653 4456678899999999999998 999999999999999998765322 1345
Q ss_pred eeeccccceecceeeEEeCCCCCeE--EEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee----ecccc
Q psy4579 173 IFTGHTAVVEVRYGLSWNPSLNGYL--LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR----LILGT 246 (368)
Q Consensus 173 ~~~~h~~~v~~~~~i~~~p~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~ 246 (368)
....|.+.+. ++.++|.....+ ++++.+++|++||.+... ......+...+..+.|.+ .++++
T Consensus 191 ~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 191 TFTQHQGAVK---AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp EECCCCSCEE---EEEECTTSTTEEEEEECTTTCEEEEEETTTCC--------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred eecccCCceE---EEEecCCCCcEEEEEecCCCCEEEEEeccccc--------ccccccceeeeeeeeecccccceEEEE
Confidence 5667788885 999999855554 467889999999998763 223344667788888875 12222
Q ss_pred cCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEE
Q psy4579 247 HTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVL 326 (368)
Q Consensus 247 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~ 326 (368)
+..| +.+.+|+..+++....+. +|.+.|++++|+|++ .+|||||.||+|+
T Consensus 260 g~~d----------------------------~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg-~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 260 GFAQ----------------------------NQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDG-ATVASAAADETLR 309 (318)
T ss_dssp CTTT----------------------------CCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS-SCEEEEETTTEEE
T ss_pred EcCC----------------------------CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCC-CEEEEEecCCeEE
Confidence 2222 335555666677777776 899999999999999 6788999999999
Q ss_pred EEECCC
Q psy4579 327 VFDYTK 332 (368)
Q Consensus 327 iwd~~~ 332 (368)
|||+..
T Consensus 310 iWd~~~ 315 (318)
T 4ggc_A 310 LWRCFE 315 (318)
T ss_dssp EECCSC
T ss_pred EEECCC
Confidence 999964
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=1.1e-27 Score=236.91 Aligned_cols=264 Identities=14% Similarity=0.129 Sum_probs=201.2
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.-++.+++|+|+++.|++++.+|.+.+|++.. +..... ......|.++.|.+.+..+..+ +.||.|++|+..
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vw~~~ 85 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVG----SDDFRIRVFNYN 85 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEE----eCCCeEEEEECC
Confidence 456799999999999999999999997776543 322222 1122347778886655444433 258999999976
Q ss_pred e-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCe
Q psy4579 118 A-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 118 ~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~ 196 (368)
. +....+..|.+.|++++|+|++ .+|++|+.||.|++||+.++.. ....+.+|...+. +++|+|.++..
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~v~---~~~~~p~~~~~ 155 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA------LEQTFEGHEHFVM---CVAFNPKDPST 155 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE------EEEEEECCSSCEE---EEEEETTEEEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce------EEEEEcCCCCcEE---EEEEEcCCCCE
Confidence 4 5556677899999999999999 8999999999999999987532 4577889999996 99999943889
Q ss_pred EEEeeCCCcEEEEECCCCCCCCccccceeeeec-ccccEeEEEEee----ecccccCCCCccceEEEEeecCCccccccc
Q psy4579 197 LLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVEDYSIHR----LILGTHTSDEQNHLLIASVQLPNEDAQFDA 271 (368)
Q Consensus 197 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 271 (368)
|++++.||.|++||++++. +...+.. +...+.+++|++ ..+.+++.+
T Consensus 156 l~~~~~dg~v~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------------------- 207 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQST-------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDD--------------------- 207 (814)
T ss_dssp EEEEETTSEEEEEETTCSS-------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTT---------------------
T ss_pred EEEEeCCCeEEEEECCCCc-------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC---------------------
Confidence 9999999999999998763 2344444 448899999975 123333322
Q ss_pred ccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec
Q psy4579 272 SNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG 351 (368)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g 351 (368)
+.+.+|+..+++....+. +|...|.+++|+|++ .+|++|+.||.|++||+.. ......+..
T Consensus 208 -------g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~----------~~~~~~~~~ 268 (814)
T 3mkq_A 208 -------LTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST----------YKVEKTLNV 268 (814)
T ss_dssp -------SEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT----------CSEEEEECC
T ss_pred -------CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEeec
Confidence 334445555566666665 799999999999999 5888999999999999975 445567788
Q ss_pred ccCceeeecceeee
Q psy4579 352 HQKEGLIEGTYNCY 365 (368)
Q Consensus 352 h~~~V~~l~w~p~~ 365 (368)
|...|.+++|+|..
T Consensus 269 ~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 269 GLERSWCIATHPTG 282 (814)
T ss_dssp SSSSEEEEEECTTC
T ss_pred CCCcEEEEEEccCC
Confidence 99999999999975
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=207.98 Aligned_cols=278 Identities=11% Similarity=0.072 Sum_probs=205.0
Q ss_pred hheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCCccccccCCcccCCC
Q psy4579 30 LYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNEDAQFDASNYDTDKG 108 (368)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
....+....+.-++.+++|+|++++|++++.|+.+.+|+. ..+...... .....|.++.+.+.+..+... +.|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~d 95 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS--LNGERLGTLDGHTGTIWSIDVDCFTKYCVTG----SAD 95 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETT
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeC--CCchhhhhhhhcCCcEEEEEEcCCCCEEEEE----eCC
Confidence 3444444556789999999999999999999999966654 333332221 122347778886554444332 358
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCC-----CcEEEEeCCCCCCCCcc----cccceeeecccc
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDD-----HTICLWDINATPKENRV----IDAKTIFTGHTA 179 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~~~~~----~~~~~~~~~h~~ 179 (368)
|.|++|+...........|...|.+++|+|++ .+|++++.+ |.|++||+......... ......+..|..
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CeEEEEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 99999998765555555599999999999999 899999998 99999999876432111 113455666666
Q ss_pred --ceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccce
Q psy4579 180 --VVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHL 255 (368)
Q Consensus 180 --~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~ 255 (368)
.+. +++|+|+ +.+|++++.||.|++||+++.. .+...+..|...|.+++|++ ..+.+++.+
T Consensus 175 ~~~~~---~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 239 (369)
T 3zwl_B 175 LDAAT---VAGWSTK-GKYIIAGHKDGKISKYDVSNNY------EYVDSIDLHEKSISDMQFSPDLTYFITSSRD----- 239 (369)
T ss_dssp CCCEE---EEEECGG-GCEEEEEETTSEEEEEETTTTT------EEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred cccee---EEEEcCC-CCEEEEEcCCCEEEEEECCCCc------EeEEEEecCCCceeEEEECCCCCEEEEecCC-----
Confidence 775 9999998 8999999999999999998742 45677888999999999986 222222222
Q ss_pred EEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCC------------
Q psy4579 256 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS------------ 323 (368)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg------------ 323 (368)
+.+.+|+..+++....+. +...+.+++|+|++ .++++++.++
T Consensus 240 -----------------------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 240 -----------------------TNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp -----------------------SEEEEEETTTCCEEEEEE--CSSCEEEEEECSSS-SEEEEEECCC------------
T ss_pred -----------------------ceEEEEECCCCceeeeec--CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCC
Confidence 234445555566555554 78899999999999 5666878887
Q ss_pred --eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 324 --DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 324 --~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
.+++||+.. ..++..+.+|...|.+++|+|+.
T Consensus 294 ~~~i~~~d~~~----------~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 294 KFEARFYHKIF----------EEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp -CEEEEEETTT----------CCEEEEEECCSSCEEEEEECTTS
T ss_pred cceeEEEecCC----------CcchhheecccCcEEEEEECCCC
Confidence 899999975 45566788999999999999874
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=3e-27 Score=212.18 Aligned_cols=293 Identities=13% Similarity=0.105 Sum_probs=195.7
Q ss_pred hhhhhhhhhcCcc--hheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCC
Q psy4579 17 NEEYKIWKKNTPF--LYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPN 93 (368)
Q Consensus 17 ~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 93 (368)
+...++|+..... ....+. .+.-++.+++|+|++++|++++.|+.+.+|+........... ......+.++.+.+
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred CCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence 4567788877764 333333 345689999999999999999999999666543221111111 22223477777765
Q ss_pred CccccccCCcccCCCCcccCCCCCeee-----eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCC----
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNEDAQF-----DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE---- 164 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~---- 164 (368)
.+..+... +.+|.|++|+.+... ......|...|.+++|+|++ .+|++|+.||.|++||++.....
T Consensus 107 ~~~~l~~~----~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 107 NEKKFAVG----SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp TSSEEEEE----ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred CCCEEEEE----eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEccccccccccc
Confidence 54443333 358999999976432 23336789999999999998 89999999999999997532110
Q ss_pred -------CcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE
Q psy4579 165 -------NRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 165 -------~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
.....+...+.+|...+. +++|+|+ +.+|++++.||.|++||++++ .++..+..|...|.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSSSCGWVH---GVCFSAN-GSRVAWVSHDSTVCLADADKK-------MAVATLASETLPLLAV 250 (372)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEE---EEEECSS-SSEEEEEETTTEEEEEEGGGT-------TEEEEEECSSCCEEEE
T ss_pred ccccccccchhhheEecCCCCCeEE---EEEECCC-CCEEEEEeCCCEEEEEECCCC-------ceeEEEccCCCCeEEE
Confidence 001235667778999996 9999998 899999999999999999887 4577888899999999
Q ss_pred EEee--ecccccCCCCccceEEEEeecCCcccccccccccCCC-------CCcccc---cCCCCcee------eeeecCc
Q psy4579 238 SIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK-------GDFGGF---GSVSGKIE------IEIKINH 299 (368)
Q Consensus 238 ~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~---~~~~~~~~------~~~~~~h 299 (368)
+|++ .++.++ .++.+++|.... +. .........+... ..+..| + ..+... ..+..+|
T Consensus 251 ~~~~~~~~l~~~-~d~~i~i~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h 325 (372)
T 1k8k_C 251 TFITESSLVAAG-HDCFPVLFTYDS--AA-GKLSFGGRLDVPKQSSQRGLTARERFQNLD-KKASSEGSAAAGAGLDSLH 325 (372)
T ss_dssp EEEETTEEEEEE-TTSSCEEEEEET--TT-TEEEECCCCCCC--------CHHHHHHHCC-CCC---------CCCSSSS
T ss_pred EEecCCCEEEEE-eCCeEEEEEccC--cC-ceEEEeeccCccccchhhhcchhhhhhhcc-cccccccCccccccccccc
Confidence 9986 344444 677777776542 00 0000000000000 001111 1 111221 2333489
Q ss_pred ccceeEEEEeCCCC---cEEEEecCCCeEEEEECCC
Q psy4579 300 EGEVNRARYMPQNP---CVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 300 ~~~i~~~~~~p~~~---~~lasgs~Dg~i~iwd~~~ 332 (368)
...|++++|+|... .+|+||+.||+|++||++.
T Consensus 326 ~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 326 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 99999999886543 5888999999999999864
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.6e-27 Score=211.70 Aligned_cols=265 Identities=9% Similarity=0.029 Sum_probs=188.3
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeecc--ccCCCCCcEEEEEEecCCCcc-ccccCCcccCCCCcccCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT--HTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGGNVQLP 114 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g~i~i~ 114 (368)
.+.-++.+++|+|++++|++++.|+.+.+|+....... ..........|.++.+.+.+. .+.++ +.||.|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~i~~w 84 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG----TVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE----ETTSCEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE----cCCCeEEEE
Confidence 45668999999999999999999999966654432200 111111223466777755444 33332 358999999
Q ss_pred CC-Ceeeeecccc--CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCC---------CCCCCcccccceeeecccccee
Q psy4579 115 NE-DAQFDASNYD--TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINA---------TPKENRVIDAKTIFTGHTAVVE 182 (368)
Q Consensus 115 ~~-~~~~~~~~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~h~~~v~ 182 (368)
+. +......+.. |...|.+++|+| + ..|++++.||.|++||+++ .. +...+. |...+.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL-------NSNNTK-VKNKIF 154 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEES-------CSSSSS-SCCCEE
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCC-------eeeEEe-eCCceE
Confidence 99 8766677778 999999999999 7 8999999999999999986 32 334444 778885
Q ss_pred cceeeEEeCCCCCeEEEeeCCCcEEEEECCC-CCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEE
Q psy4579 183 VRYGLSWNPSLNGYLLSASDDHTICLWDINA-TPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIA 258 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~ 258 (368)
+++|+|+ . +++++.|+.|++||+++ ... ........|...+.+++|++ ..+.+++.++.+++|..
T Consensus 155 ---~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 155 ---TMDTNSS-R--LIVGMNNSQVQWFRLPLCEDD-----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp ---EEEECSS-E--EEEEESTTEEEEEESSCCTTC-----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred ---EEEecCC-c--EEEEeCCCeEEEEECCccccc-----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 9999987 4 99999999999999987 432 11234456788899999986 45566666666555543
Q ss_pred EeecCCcccccccccccCCCCCcccccCCCCceeeeee--------cCcccceeEEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 259 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK--------INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
...-... ..+....+. .+|...|.+++|+|++ .+|++|+.||.|++||+
T Consensus 224 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 224 DDQGDDY----------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CTTCCST----------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEET
T ss_pred cCCCccc----------------------ccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcC
Confidence 2100000 001122222 1345599999999999 57789999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecc-cCceeeec
Q psy4579 331 TKHPSKPDPNGECHPDLRLRGH-QKEGLIEG 360 (368)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~ 360 (368)
+. ...+..+.+| .+.|.+++
T Consensus 281 ~~----------~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 281 QT----------RKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp TT----------TEEEEECCCCSSSEEEEEE
T ss_pred cc----------HhHhhhhhcccCCCceEec
Confidence 75 3445677888 99999998
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=3.2e-27 Score=226.14 Aligned_cols=312 Identities=12% Similarity=0.141 Sum_probs=207.5
Q ss_pred hhhhhhhhhcCc--------chheeecccccccCceeeEecCCcccccCCCCc----cccccCcceeeeccccCCCCCcE
Q psy4579 17 NEEYKIWKKNTP--------FLYDLVMTHALEWPSLTAQWLPDVTSVQLPNED----AQFDASNYDTDKGTHTSDEQNHL 84 (368)
Q Consensus 17 ~~~~~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 84 (368)
+...++|+.... .+...+. ....++.+++|+|++++|++++.+ +.+.+|+ ......... ....
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-~~~~ 161 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQ--VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-GHSQ 161 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEE--CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-SCSS
T ss_pred CCEEEEEeCCCCcccccccccccchhh--cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-cCCc
Confidence 456778888533 2332222 246689999999999999998877 5664444 222111111 2223
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCe-eeeeccccCCC---CceeeEecCC-CCCeeEEEeCCCcEEEEeCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDK---GGYGLSWNPS-LNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~---~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~ 159 (368)
.|.++.+.+......+.+ +.||.|++|+... +....+..|.. .|++++|+|+ + ++|++++.||.|++||+.
T Consensus 162 ~v~~~~~~~~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGK 237 (615)
T ss_dssp CEEEEEECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETT
T ss_pred cEEEEEECCCCCcEEEEE---eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECC
Confidence 477788866554223222 3589999999764 55566777998 9999999999 8 899999999999999998
Q ss_pred CCCCCCcccccceee-e---ccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCcc---------------
Q psy4579 160 ATPKENRVIDAKTIF-T---GHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV--------------- 220 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~-~---~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------- 220 (368)
+++ ....+ . +|...|. +++|+ + +.+|++++.||.|++||++++......
T Consensus 238 ~~~-------~~~~~~~~~~~~~~~v~---~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 238 SGE-------FLKYIEDDQEPVQGGIF---ALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp TCC-------EEEECCBTTBCCCSCEE---EEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred CCC-------EeEEecccccccCCceE---EEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 764 45566 5 8999996 99999 6 999999999999999999875321100
Q ss_pred -----------------------ccceeeeecccccEeEEEEeeecccccCCCCccceEE------------EEeecCCc
Q psy4579 221 -----------------------IDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLI------------ASVQLPNE 265 (368)
Q Consensus 221 -----------------------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~------------~~~~~~~~ 265 (368)
..++..+.+|...|.+++| +. +.+++.|+.+++|. ..+.+++
T Consensus 306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~- 382 (615)
T 1pgu_A 306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK- 382 (615)
T ss_dssp EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCS-
T ss_pred eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECC-
Confidence 0122344556666666666 44 44444443333321 1111100
Q ss_pred cccccc-------cccc---------------------------------------------------------------
Q psy4579 266 DAQFDA-------SNYD--------------------------------------------------------------- 275 (368)
Q Consensus 266 ~~~~~~-------~~~d--------------------------------------------------------------- 275 (368)
...+.. ..|+
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG 462 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEe
Confidence 000000 0000
Q ss_pred CC-CCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec-cc
Q psy4579 276 TD-KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQ 353 (368)
Q Consensus 276 ~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g-h~ 353 (368)
.. .+.+.+|+..+++.......+|...|.+++|+|++ .+|++|+.||.|++||+.. ..++..+.+ |.
T Consensus 463 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~h~ 531 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQS----------REVKTSRWAFRT 531 (615)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEECCSCCCS
T ss_pred ecCCCeEEEEECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCC----------CcceeEeecCCC
Confidence 01 45566666666554422333799999999999999 6888999999999999975 344455667 99
Q ss_pred Cceeeeccee
Q psy4579 354 KEGLIEGTYN 363 (368)
Q Consensus 354 ~~V~~l~w~p 363 (368)
..|++++|+|
T Consensus 532 ~~v~~~~~sp 541 (615)
T 1pgu_A 532 SKINAISWKP 541 (615)
T ss_dssp SCEEEEEECC
T ss_pred CceeEEEEcC
Confidence 9999999999
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=6.5e-27 Score=215.13 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=200.8
Q ss_pred hhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccc
Q psy4579 21 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFD 99 (368)
Q Consensus 21 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 99 (368)
++|+.....+..........-++.+++| +++++++|+.||.+.+|+. ..+..... ......|.++.+ .+ ...
T Consensus 114 ~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~--~~-~~l 186 (435)
T 1p22_A 114 SNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSVLCLQY--DE-RVI 186 (435)
T ss_dssp HHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEES--SSCCEEEEECCCSSCEEEEEC--CS-SEE
T ss_pred hhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeC--CCCeEEEEEcCCCCcEEEEEE--CC-CEE
Confidence 4576654433322222233446777777 8999999999999976654 33333222 112234666666 22 233
Q ss_pred cCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc
Q psy4579 100 ASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 178 (368)
Q Consensus 100 ~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~ 178 (368)
+++ +.||.|++|+... +....+.+|...|.+++|++ ..+++|+.||.|++||+.++... .....+.+|.
T Consensus 187 ~sg---~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~ 256 (435)
T 1p22_A 187 ITG---SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI----TLRRVLVGHR 256 (435)
T ss_dssp EEE---ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----EEEEEECCCS
T ss_pred EEE---cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----eeeeEecCCC
Confidence 332 4599999999864 55667788999999999974 68999999999999999876421 1236778899
Q ss_pred cceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEE
Q psy4579 179 AVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIA 258 (368)
Q Consensus 179 ~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~ 258 (368)
..|. +++| + ++++++|+.||.|++||++++ .++..+.+|...|.++++++..+.+++.|+.+++
T Consensus 257 ~~v~---~~~~--~-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~i--- 320 (435)
T 1p22_A 257 AAVN---VVDF--D-DKYIVSASGDRTIKVWNTSTC-------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL--- 320 (435)
T ss_dssp SCEE---EEEE--E-TTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE---
T ss_pred CcEE---EEEe--C-CCEEEEEeCCCeEEEEECCcC-------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEE---
Confidence 9996 8998 3 789999999999999999987 4577888999999999998766666655554444
Q ss_pred EeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCC
Q psy4579 259 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD 338 (368)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~ 338 (368)
|+..+++....+. +|...|.+++| ++ .+|++|+.||.|++||++.......
T Consensus 321 -------------------------wd~~~~~~~~~~~-~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 321 -------------------------WDIECGACLRVLE-GHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp -------------------------EETTTCCEEEEEC-CCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred -------------------------EECCCCCEEEEEe-CCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccc
Confidence 3444555555555 89999999999 55 6788999999999999975321111
Q ss_pred CCCCCCCceeeecccCceeeecceeee
Q psy4579 339 PNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 339 ~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
. .....+..+.+|.+.|++++|++.+
T Consensus 372 ~-~~~~~~~~~~~h~~~v~~l~~~~~~ 397 (435)
T 1p22_A 372 P-AGTLCLRTLVEHSGRVFRLQFDEFQ 397 (435)
T ss_dssp C-TTTTEEEEECCCSSCCCCEEECSSC
T ss_pred c-ccchheeeccCCCCCeEEEEeCCCE
Confidence 1 1112455678999999999997655
No 77
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=8e-27 Score=214.20 Aligned_cols=266 Identities=16% Similarity=0.205 Sum_probs=186.9
Q ss_pred ccccccCceeeEecCC-cccccCCCCccccccCcceeee--------ccccCC-CCCcEEEEEEecCCCccccccCCccc
Q psy4579 36 THALEWPSLTAQWLPD-VTSVQLPNEDAQFDASNYDTDK--------GTHTSD-EQNHLLIASVQLPNEDAQFDASNYDT 105 (368)
Q Consensus 36 ~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 105 (368)
...+..++.+++|+|+ +..+++++.+|.|.+|+..... ...... ......+.++.|.+......+++
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--- 200 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA--- 200 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE---
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE---
Confidence 3445678999999998 7899999999999777654310 111111 01112355666655444233333
Q ss_pred CCCCcccCCCCCee-----e---eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecc
Q psy4579 106 DKGGNVQLPNEDAQ-----F---DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH 177 (368)
Q Consensus 106 ~~~g~i~i~~~~~~-----~---~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h 177 (368)
+.||.|++|+.... . ...+..|...|.+++|+|++..+|++++.||.|++||+++.... .+...+..|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----~~~~~~~~~ 276 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----KPSHTVDAH 276 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS----SCSEEEECC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC----cceeEeecC
Confidence 35899999998651 1 23456799999999999955589999999999999999876321 245677899
Q ss_pred ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccc
Q psy4579 178 TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNH 254 (368)
Q Consensus 178 ~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~ 254 (368)
...|+ +++|+|++..++++|+.||.|++||++... .++..+.+|...|.+++|+| .++++++.++.++
T Consensus 277 ~~~v~---~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 277 TAEVN---CLSFNPYSEFILATGSADKTVALWDLRNLK------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp SSCEE---EEEECSSCTTEEEEEETTSEEEEEETTCTT------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred CCCeE---EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 99996 999999845589999999999999998753 34677888999999999986 3577777777776
Q ss_pred eEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 255 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+|..... ...... -+...+ ........ .+|...|.+++|+|+++.+|++++.||.|++|++..
T Consensus 348 iwd~~~~--~~~~~~----~~~~~~--------~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 348 VWDLSKI--GEEQST----EDAEDG--------PPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEGGGT--TCCCCH----HHHHHC--------CTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEeCCCC--ccccCc----cccccC--------CcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 6643210 000000 000000 01223333 379999999999999966999999999999999974
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-27 Score=210.61 Aligned_cols=277 Identities=11% Similarity=0.110 Sum_probs=193.9
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCcc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDA 96 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (368)
+...++|+.........+.. ..-++.+++|+|++++|++++.|+.+.+|+.. .+...........+.++.+.+.+.
T Consensus 53 dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 53 DSSASVWYSLNGERLGTLDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS--NGQCVATWKSPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEEECSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCchhhhhhhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEeecCCCeEEEEEccCCC
Confidence 44677888777665555543 35589999999999999999999999666543 332222211223466777766555
Q ss_pred ccccCCcc-cCCCCcccCCCCCee------------eeeccccCCC--CceeeEecCCCCCeeEEEeCCCcEEEEeCCCC
Q psy4579 97 QFDASNYD-TDKGGNVQLPNEDAQ------------FDASNYDTDK--GGYGLSWNPSLNGYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 97 ~~~~~~~~-~~~~g~i~i~~~~~~------------~~~~~~~h~~--~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 161 (368)
.+.+...+ ...+|.|.+|+.... .......|.. .+.+++|+|++ +.|++++.||.|++||+.+.
T Consensus 129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTT
T ss_pred EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCC
Confidence 44433211 123489999987542 2223445655 99999999998 89999999999999999874
Q ss_pred CCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee
Q psy4579 162 PKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 241 (368)
. .....+..|...+. +++|+|+ +.+|++++.||.|++||++++ .....+. +...+..++|++
T Consensus 208 ~------~~~~~~~~~~~~v~---~~~~~~~-~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~-~~~~~~~~~~~~ 269 (369)
T 3zwl_B 208 Y------EYVDSIDLHEKSIS---DMQFSPD-LTYFITSSRDTNSFLVDVSTL-------QVLKKYE-TDCPLNTAVITP 269 (369)
T ss_dssp T------EEEEEEECCSSCEE---EEEECTT-SSEEEEEETTSEEEEEETTTC-------CEEEEEE-CSSCEEEEEECS
T ss_pred c------EeEEEEecCCCcee---EEEECCC-CCEEEEecCCceEEEEECCCC-------ceeeeec-CCCCceeEEecC
Confidence 2 25678888999996 9999998 999999999999999999886 3345555 777899999986
Q ss_pred --ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEe
Q psy4579 242 --LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATK 319 (368)
Q Consensus 242 --~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasg 319 (368)
..+.+++.++...++.... ......+.+|+..+++....+. +|...|.+++|+|++ .+|++|
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~s~ 333 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSA--------------NEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQG-TSYASG 333 (369)
T ss_dssp SSSEEEEEECCC---------------------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-SEEEEE
T ss_pred CCceEEEeecCCCceEEEEec--------------CCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCC-CEEEEE
Confidence 2233333333222222110 0111235556666777776666 899999999999999 688899
Q ss_pred cCCCeEEEEECCC
Q psy4579 320 TPSSDVLVFDYTK 332 (368)
Q Consensus 320 s~Dg~i~iwd~~~ 332 (368)
+.||.|++|+++.
T Consensus 334 ~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 334 GEDGFIRLHHFEK 346 (369)
T ss_dssp ETTSEEEEEEECH
T ss_pred cCCCeEEEEECcc
Confidence 9999999999975
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-27 Score=235.49 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=140.3
Q ss_pred cccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 37 HALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
+-++-++.+++|+|++++||+|+.||.+++|+... +...........|..+.|.+ +. ..+++ +.|++|++|+.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~---s~D~~v~lWd~ 86 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVI---NAKDTVYVLSL 86 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEE---ETTCEEEEEET
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEEEEcCCCCCEEEEEEcC-CC-EEEEE---ECcCeEEEEEC
Confidence 34567899999999999999999999997775432 22211222234578888865 33 23332 35999999998
Q ss_pred CeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCccccc---c-eeeeccccceecceeeEEeCC
Q psy4579 117 DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA---K-TIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 117 ~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~---~-~~~~~h~~~v~~~~~i~~~p~ 192 (368)
..........|...|++++|+|++ ++|++|+.||+|++||++++......... . ..+.+|.++|. +++|+|+
T Consensus 87 ~~~~~~~~~~~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~---sl~~sp~ 162 (902)
T 2oaj_A 87 YSQKVLTTVFVPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV---SIQWNPR 162 (902)
T ss_dssp TTCSEEEEEECSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC---EEEEETT
T ss_pred CCCcEEEEEcCCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE---EEEEccC
Confidence 754443334577899999999999 99999999999999999876321000000 0 23467999996 9999997
Q ss_pred CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc------------------cccEeEEEEee--ecccccCCCCc
Q psy4579 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH------------------TAVVEDYSIHR--LILGTHTSDEQ 252 (368)
Q Consensus 193 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~v~~v~~~~--~~~~~~~~d~~ 252 (368)
+...+++|+.||.| +||++++. +...+..| ...|++++|+| ..+++++.|+.
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENE-------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTE-------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred CCCEEEEEeCCCcE-EEECCCCc-------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 56799999999999 99998762 23333322 45677777764 34555566655
Q ss_pred cceE
Q psy4579 253 NHLL 256 (368)
Q Consensus 253 ~~~~ 256 (368)
+++|
T Consensus 235 i~lW 238 (902)
T 2oaj_A 235 LVFW 238 (902)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5555
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=4.6e-26 Score=208.49 Aligned_cols=262 Identities=19% Similarity=0.203 Sum_probs=193.2
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe-e
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-Q 119 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~ 119 (368)
....++|++++ .||+|. |++|++|+.....-.+... ......|.++.|.+++..+. .+ +.||.|++|+... +
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la-sg---s~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA-VG---TSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE-EE---ETTSCEEEEETTTTE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE-EE---ECCCeEEEEEcCCCc
Confidence 34568999864 677764 7888766544322222222 23345688999976554433 33 3699999999864 6
Q ss_pred eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEE
Q psy4579 120 FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLS 199 (368)
Q Consensus 120 ~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s 199 (368)
.+....+|...|.++++++ ..|++|+.|+.+++||...... ....+.+|...+. .+.|+|+ +.++++
T Consensus 181 ~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~------~~~~~~~h~~~~~---~~~~~~~-g~~l~s 247 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH------HVATLSGHSQEVC---GLRWAPD-GRHLAS 247 (420)
T ss_dssp EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC------EEEEEECCSSCEE---EEEECTT-SSEEEE
T ss_pred EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce------eeEEeccccccee---eeeecCC-CCeeee
Confidence 6677888999999998863 7899999999999999987542 4577889999996 9999998 999999
Q ss_pred eeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee---cc--cccCCCCccceEEEEeecCCcccccccccc
Q psy4579 200 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL---IL--GTHTSDEQNHLLIASVQLPNEDAQFDASNY 274 (368)
Q Consensus 200 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
++.|+.+++||...+.... ..+.....|...|.+++|++. ++ ++++.|+.
T Consensus 248 ~~~D~~v~i~~~~~~~~~~---~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~---------------------- 302 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH---------------------- 302 (420)
T ss_dssp EETTSCEEEEESSCCSSCS---CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE----------------------
T ss_pred eeccccceEEeeccccccc---eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE----------------------
Confidence 9999999999998764322 234567779999999999751 22 22233333
Q ss_pred cCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE-ecCCCeEEEEECCCCCCCCCCCCCCCCceeeeccc
Q psy4579 275 DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT-KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ 353 (368)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~ 353 (368)
+.+|+..++.....+. +...+.++.|+|++..++++ |+.|+.|+|||++. ..++..+.||.
T Consensus 303 ------I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----------~~~v~~l~gH~ 364 (420)
T 4gga_A 303 ------IRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----------MAKVAELKGHT 364 (420)
T ss_dssp ------EEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT----------CCEEEEECCCS
T ss_pred ------EEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCC----------CcEEEEEcCCC
Confidence 4445555666655554 55679999999999655543 45899999999975 56677899999
Q ss_pred Cceeeecceeee
Q psy4579 354 KEGLIEGTYNCY 365 (368)
Q Consensus 354 ~~V~~l~w~p~~ 365 (368)
+.|++|+|+|+.
T Consensus 365 ~~V~~l~~spdg 376 (420)
T 4gga_A 365 SRVLSLTMSPDG 376 (420)
T ss_dssp SCEEEEEECTTS
T ss_pred CCEEEEEEcCCC
Confidence 999999999975
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=2.7e-26 Score=210.97 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=147.9
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCee---eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ---FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~---~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 161 (368)
.|.++.|.+.+..+.+.+ +.||.|++||.... ......+|.+.|++|+|+|.+..+|++|+.||+|++||+++.
T Consensus 121 ~V~~l~~~P~~~~~lasG---s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVG---SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEE---ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CEEEEEEeCCCCCEEEEE---eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 488899966555555554 46999999998642 345567899999999999954489999999999999999765
Q ss_pred CCCCcccccceeeecc---ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 162 PKENRVIDAKTIFTGH---TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~h---~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
. ...+..+ ...+ .+++|+|+ +.+|++|+.||.|++||++.. .+..+.+|...|++++
T Consensus 198 ~--------~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 198 I--------LRVFASSDTINIWF---CSLDVSAS-SRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVA 257 (435)
T ss_dssp E--------EEEEECCSSCSCCC---CCEEEETT-TTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEE
T ss_pred c--------eeEEeccCCCCccE---EEEEECCC-CCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeee
Confidence 2 2333322 2334 38999998 999999999999999999753 3456788999999999
Q ss_pred Eee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCcee--eeeecCcccceeEEEEeCCCC
Q psy4579 239 IHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE--IEIKINHEGEVNRARYMPQNP 313 (368)
Q Consensus 239 ~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~~~~~p~~~ 313 (368)
|+| .++++++.|+.+++|.. .+.+.. .....+|...|++++|+|++
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~----------------------------~~~~~~~~~~~~~~h~~~v~~~~~spdg- 308 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDL----------------------------RQVRGKASFLYSLPHRHPVNAACFSPDG- 308 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEET----------------------------TTCCSSSCCSBCCBCSSCEEECCBCTTS-
T ss_pred ecCCCceEEEEecCcceeeEEec----------------------------ccccccceEEEeeeccccccceeECCCC-
Confidence 985 35666666666665532 111111 11223799999999999999
Q ss_pred cEEEEecCCCeEEEEECCC
Q psy4579 314 CVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 314 ~~lasgs~Dg~i~iwd~~~ 332 (368)
.+|++|+.||+|+|||++.
T Consensus 309 ~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp SEEEEEESSSCEEEEESSS
T ss_pred CeeEEEcCCCEEEEEECCC
Confidence 6788999999999999976
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.94 E-value=2e-26 Score=220.50 Aligned_cols=286 Identities=10% Similarity=0.005 Sum_probs=208.0
Q ss_pred hhhhhhhhcCc----chheeecccccccC-ceeeEecC--CcccccCCCCccccccCcceee------eccccCC-CCCc
Q psy4579 18 EEYKIWKKNTP----FLYDLVMTHALEWP-SLTAQWLP--DVTSVQLPNEDAQFDASNYDTD------KGTHTSD-EQNH 83 (368)
Q Consensus 18 ~~~~~w~~~~~----~~~~~~~~~~~~~~-~~~~~~~p--~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~ 83 (368)
....+|+..++ .....+.. +..+ +.+++|+| ++++|++++.||.+.+|+.... ....... ....
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~--h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 116 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTG--HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 116 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECT--TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred CeEEEEECCCCCCccccceEEec--CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence 45677887766 45444433 3557 99999999 9999999999999977765422 1122111 1122
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
..|..+.+.+.+..+.+...+....+.|.+|+ .++....+.+|...|++++|+|+++..+++++.||.|++||+.+..
T Consensus 117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~- 194 (615)
T 1pgu_A 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK- 194 (615)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-
T ss_pred ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-
Confidence 34778888766655555443333348999999 4456677788999999999999984489999999999999988763
Q ss_pred CCcccccceeeecccc---ceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee-e---cccccEeE
Q psy4579 164 ENRVIDAKTIFTGHTA---VVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-T---GHTAVVED 236 (368)
Q Consensus 164 ~~~~~~~~~~~~~h~~---~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~---~~~~~v~~ 236 (368)
....+.+|.. .+. +++|+|+++.+|++++.||.|++||++++ ..+..+ . +|...|.+
T Consensus 195 ------~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 195 ------FSASDRTHHKQGSFVR---DVEFSPDSGEFVITVGSDRKISCFDGKSG-------EFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp ------EEEEECSSSCTTCCEE---EEEECSTTCCEEEEEETTCCEEEEETTTC-------CEEEECCBTTBCCCSCEEE
T ss_pred ------eeeeecccCCCCceEE---EEEECCCCCCEEEEEeCCCeEEEEECCCC-------CEeEEecccccccCCceEE
Confidence 5677888998 886 99999975789999999999999999887 345666 5 79999999
Q ss_pred EEEe-eecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeec---CcccceeEEEEeCCC
Q psy4579 237 YSIH-RLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI---NHEGEVNRARYMPQN 312 (368)
Q Consensus 237 v~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~ 312 (368)
++|+ ...+.+++.++. +.+|+..+++....+.. .+...+.++.|. ++
T Consensus 259 ~~~~~~~~l~~~~~d~~----------------------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 259 LSWLDSQKFATVGADAT----------------------------IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp EEESSSSEEEEEETTSE----------------------------EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred EEEcCCCEEEEEcCCCc----------------------------EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 9995 223333333333 33444445555555542 135678888886 66
Q ss_pred CcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceee
Q psy4579 313 PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 313 ~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~ 364 (368)
.++++|+.||.|++||++. ..++..+.+|.+.|.+++| |.
T Consensus 310 -~~l~~~~~~g~i~~~d~~~----------~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 310 -GRIISLSLDGTLNFYELGH----------DEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp -TEEEEEETTSCEEEEETTE----------EEEEEEECCCSSCEEEEET-TT
T ss_pred -CeEEEEECCCCEEEEECCC----------CcEEEEEeCCCCCEEEEEe-cC
Confidence 5778999999999999975 3455677889999999988 75
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-26 Score=200.57 Aligned_cols=255 Identities=16% Similarity=0.075 Sum_probs=189.9
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.-++.+++| |++++|++++.||.+++|+.. .+..... ......+.++.+.+....+... +.||.+++|+..
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~~~~~~ 89 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDSEKELLLFG----GKDTMINGVPLF 89 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEES--SSEEEEEEEECSSCEEEEEEETTTTEEEEE----ETTSCEEEEETT
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC--CCEEEEEeecCCccEEEEEECCCCCEEEEe----cCCCeEEEEEee
Confidence 4668999999 999999999999999777543 2222221 1112346677775554443333 358999988754
Q ss_pred e----eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCC
Q psy4579 118 A----QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193 (368)
Q Consensus 118 ~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~ 193 (368)
. +....+..|...|.+++|+ + ++|++++.||.|++||. . .....+..|...+. +++|+|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~-------~~~~~~~~~~~~v~---~~~~~~~~ 154 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--G-------SLVYNLQAHNASVW---DAKVVSFS 154 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--T-------EEEEEEECCSSCEE---EEEEEETT
T ss_pred ecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--C-------cEEEecccCCCcee---EEEEccCC
Confidence 3 3455677899999999993 4 79999999999999992 2 15677888999995 99999844
Q ss_pred CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeec-ccccEeEEEEeee-cccccCCCCccceEEEEeecCCccccccc
Q psy4579 194 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVEDYSIHRL-ILGTHTSDEQNHLLIASVQLPNEDAQFDA 271 (368)
Q Consensus 194 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 271 (368)
++++++++.||.|++||... ....+.. |...+.+++|++. .+.+++.+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d--------------------- 204 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK---------VIKTFSGIHNDVVRHLAVVDDGHFISCSND--------------------- 204 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE---------EEEEECSSCSSCEEEEEEEETTEEEEEETT---------------------
T ss_pred CCEEEEEECCCCEEEEecCc---------eEEEEeccCcccEEEEEEcCCCeEEEccCC---------------------
Confidence 89999999999999999433 3456666 8899999999862 12222222
Q ss_pred ccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec
Q psy4579 272 SNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG 351 (368)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g 351 (368)
+.+.+|+..+++....+. +|...|.+++|+|++ . |++++.||.|++||++. ..+...+.+
T Consensus 205 -------g~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~----------~~~~~~~~~ 264 (313)
T 3odt_A 205 -------GLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKEN----------GSLKQVITL 264 (313)
T ss_dssp -------SEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTT----------CCEEEEEEC
T ss_pred -------CeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-C-EEEEecCCEEEEEECCC----------CceeEEEec
Confidence 334455555666666665 899999999999999 4 66899999999999975 455667889
Q ss_pred ccCceeeecceeee
Q psy4579 352 HQKEGLIEGTYNCY 365 (368)
Q Consensus 352 h~~~V~~l~w~p~~ 365 (368)
|...|.+++|+|+.
T Consensus 265 ~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 265 PAISIWSVDCMSNG 278 (313)
T ss_dssp SSSCEEEEEECTTS
T ss_pred cCceEEEEEEccCC
Confidence 99999999999874
No 84
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-26 Score=211.67 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=194.0
Q ss_pred ccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA 118 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~ 118 (368)
..++.+++|+|++++|++++.++.+.+|+ ..+..... ......|.++.+.+.+..+... +.||.|++|+...
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN---KTGALLNVLNFHRAPIVSVKWNKDGTHIISM----DVENVTILWNVIS 180 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE---TTSCEEEEECCCCSCEEEEEECTTSSEEEEE----ETTCCEEEEETTT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCeeeeccCCCccEEEEEECCCCCEEEEE----ecCCeEEEEECCC
Confidence 45899999999999999999999997775 22222222 2223457778886555444333 3589999999864
Q ss_pred -eeeeccccCCCC---------------ceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccccee
Q psy4579 119 -QFDASNYDTDKG---------------GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 182 (368)
Q Consensus 119 -~~~~~~~~h~~~---------------v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 182 (368)
+....+..|... +.+++|+|++ .+++++.||.|++||+.++. +...+.+|...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT-------PTGKLIGHHGPIS 251 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS-------CSEEECCCSSCEE
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc-------eeeeeccCCCceE
Confidence 444555556655 9999999974 68999999999999998764 5677889999996
Q ss_pred cceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-cccccCCCCccceEE----
Q psy4579 183 VRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-ILGTHTSDEQNHLLI---- 257 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~d~~~~~~~---- 257 (368)
+++|+|+ +.+|++++.||.|++||++++ .+...+.+|...|.+++|++. .+.+++.++.+++|.
T Consensus 252 ---~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 252 ---VLEFNDT-NKLLLSASDDGTLRIWHGGNG-------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp ---EEEEETT-TTEEEEEETTSCEEEECSSSB-------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT
T ss_pred ---EEEECCC-CCEEEEEcCCCEEEEEECCCC-------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC
Confidence 9999998 889999999999999999886 346677889999999999864 667777777777773
Q ss_pred -------------EEeecCCcccccccccccCCCCCcccccCCCCc--------------------eeeeeecCccc--c
Q psy4579 258 -------------ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK--------------------IEIEIKINHEG--E 302 (368)
Q Consensus 258 -------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--------------------~~~~~~~~h~~--~ 302 (368)
..+.+.++...+.+.. ..+.+.+|+..++. ....+. +|.. .
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 396 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDY 396 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCC
T ss_pred cEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCc
Confidence 2223333333333222 34568888887776 555555 7766 9
Q ss_pred eeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 303 VNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 303 i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
|++++|+|++ .+|++|+.||.|++||++
T Consensus 397 v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 397 IFDLSWNCAG-NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred eEEEEccCCC-ceEEEEecCceEEEEeec
Confidence 9999999999 588899999999999985
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=4.2e-26 Score=202.16 Aligned_cols=273 Identities=12% Similarity=0.111 Sum_probs=190.8
Q ss_pred cccCceeeEecCC-cccccCCCCccccccCcceeeec---cccCCCC-CcEEEEEEecCCCccccccCCcccCCCCcccC
Q psy4579 39 LEWPSLTAQWLPD-VTSVQLPNEDAQFDASNYDTDKG---THTSDEQ-NHLLIASVQLPNEDAQFDASNYDTDKGGNVQL 113 (368)
Q Consensus 39 ~~~~~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i 113 (368)
+.-+|.+++|+|+ +++|++||.|+.+++|+...... ....... ....|.++.|.+++..+... +.||.|++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~----~~d~~i~~ 112 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG----SWDGTLRL 112 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE----cccccceE
Confidence 4678999999998 68899999999997776543211 1111111 12347778886655444332 35899999
Q ss_pred CCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC
Q psy4579 114 PNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 114 ~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~ 192 (368)
|+... ........+...+.++.+++++ ..|++|+.|+.+++||+..... ......+|...+. .++|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~------~~~~~~~~~~~v~---~~~~~~~ 182 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCK------YTVQDESHSEWVS---CVRFSPN 182 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE------EEECSSSCSSCEE---EEEECSC
T ss_pred EeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCce------EEEEeccccCccc---ceEEccC
Confidence 98865 3444556688889999999998 8999999999999999876532 3345667888886 8999876
Q ss_pred C-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEEEEeecCCccccc
Q psy4579 193 L-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQF 269 (368)
Q Consensus 193 ~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 269 (368)
. ..++++++.|+.|++||+++. .+...+.+|...|++++|+| .++++++.|+.+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i---------------- 239 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANC-------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA---------------- 239 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE----------------
T ss_pred CCCcEEEEEcCCCEEEEEECCCC-------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE----------------
Confidence 3 346889999999999999887 45677889999999999986 344444444433
Q ss_pred ccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee
Q psy4579 270 DASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL 349 (368)
Q Consensus 270 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 349 (368)
.+|+..+.+....+. +...|.+++|+|++ .++ +++.|+.|++||++......... ........
T Consensus 240 ------------~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~ 302 (340)
T 4aow_A 240 ------------MLWDLNEGKHLYTLD--GGDIINALCFSPNR-YWL-CAATGPSIKIWDLEGKIIVDELK-QEVISTSS 302 (340)
T ss_dssp ------------EEEETTTTEEEEEEE--CSSCEEEEEECSSS-SEE-EEEETTEEEEEETTTTEEEEEEC-CC------
T ss_pred ------------EEEEeccCceeeeec--CCceEEeeecCCCC-cee-eccCCCEEEEEECCCCeEEEecc-ccceeeec
Confidence 334444455554443 56789999999988 566 66789999999997522111000 01112234
Q ss_pred ecccCceeeecceeee
Q psy4579 350 RGHQKEGLIEGTYNCY 365 (368)
Q Consensus 350 ~gh~~~V~~l~w~p~~ 365 (368)
.+|...|++++|+|+.
T Consensus 303 ~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 303 KAEPPQCTSLAWSADG 318 (340)
T ss_dssp -CCCCCEEEEEECTTS
T ss_pred cCCCCCEEEEEECCCC
Confidence 6899999999999974
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=206.37 Aligned_cols=285 Identities=12% Similarity=0.083 Sum_probs=190.0
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCC---cccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEec-
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD---VTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQL- 91 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~- 91 (368)
+...++|+.....+.... ......++.+++|+|+ ++.|++++.|+.+.+|+...... .... ......|.++.+
T Consensus 43 d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-PVYSVKGHKEIINAIDGI 120 (357)
T ss_dssp CEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-CSEEECCCSSCEEEEEEE
T ss_pred CcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-cEEEEEecccceEEEeec
Confidence 456788988776543322 2245678999999999 69999999999997765543220 1111 112233555543
Q ss_pred -----CCCccccccCCcccCCCCcccCCCCCee--eeeccccCC----CCceeeE----ecCCCCCeeEEEeCCCcEEEE
Q psy4579 92 -----PNEDAQFDASNYDTDKGGNVQLPNEDAQ--FDASNYDTD----KGGYGLS----WNPSLNGYLLSASDDHTICLW 156 (368)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~g~i~i~~~~~~--~~~~~~~h~----~~v~~l~----~sp~~~~~lasg~~dg~v~iw 156 (368)
.+....+. .+ +.||.|++|+.... ....+..|. ..|.+++ |+|++ .+|++++.||.|++|
T Consensus 121 ~~~~~s~~~~~l~-~~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 121 GGLGIGEGAPEIV-TG---SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLF 195 (357)
T ss_dssp SGGGCC-CCCEEE-EE---ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEE
T ss_pred cccccCCCccEEE-EE---eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEE
Confidence 23333332 22 46899999998753 233443333 3899998 78898 899999999999999
Q ss_pred eCCCCCCCCcccccceeeeccccceecceeeEEeC---CCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeeccccc
Q psy4579 157 DINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP---SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV 233 (368)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
|++++. ......|...+. +++|+| + +.+|++|+.||.|++||++++...... ....+.+|...
T Consensus 196 d~~~~~--------~~~~~~~~~~v~---~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~ 261 (357)
T 3i2n_A 196 DLRNMA--------LRWETNIKNGVC---SLEFDRKDIS-MNKLVATSLEGKFHVFDMRTQHPTKGF--ASVSEKAHKST 261 (357)
T ss_dssp ETTTTE--------EEEEEECSSCEE---EEEESCSSSS-CCEEEEEESTTEEEEEEEEEEETTTEE--EEEEEECCSSC
T ss_pred ECccCc--------eeeecCCCCceE---EEEcCCCCCC-CCEEEEECCCCeEEEEeCcCCCcccce--eeeccCCCcCC
Confidence 998763 244567888886 999999 6 899999999999999999876322110 01134489999
Q ss_pred EeEEEEee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 234 VEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 234 v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
|.+++|+| .++.+++.|+.+++|........ .. .+. .+..... ..+.+....+. +|...|++++|+|
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~-----~~~-~g~~~~~-~~~~~~~~~~~-~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR--SK-----KDS-EGIEMGV-AGSVSLLQNVT-LSTQPISSLDWSP 331 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC---------CCT-TSCCCCC-CCEEEEEEEEE-CCSSCEEEEEECS
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc--cc-----ccC-CCCcccc-ccccceeeccc-cCCCCeeEEEEcC
Confidence 99999986 27888888888888766532111 00 000 0000000 00112333344 8999999999999
Q ss_pred CCCcEEEEecCCCeEEEEECCC
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++..++++|+.||.|++||+.+
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC
T ss_pred CCCeEEEEecCCCcEEEEECCC
Confidence 9965555899999999999975
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.9e-27 Score=232.11 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=128.7
Q ss_pred hhhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCc
Q psy4579 16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNED 95 (368)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 95 (368)
.+...++|......+. .......+|.+++|+| +++|++++.|+.+++|+.+. +...........|.++.+.+..
T Consensus 37 ~Dg~I~lw~~~~~~~~---~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~~~~~~~~~~V~~v~~sp~g 110 (902)
T 2oaj_A 37 VTGEVHIYGQQQVEVV---IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKVLTTVFVPGKITSIDTDASL 110 (902)
T ss_dssp TTSEEEEECSTTCEEE---EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSEEEEEECSSCEEEEECCTTC
T ss_pred CCCEEEEEeCCCcEEE---EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcEEEEEcCCCCEEEEEECCCC
Confidence 3456788876654332 1223456899999999 88999999999997776543 2222111112347788886655
Q ss_pred cccccCCcccCCCCcccCCCCCeeee------------eccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDAQFD------------ASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~~~~------------~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
..+.. + +.||.|++|+.+.... ....+|.+.|++++|+|++...|++|+.||.| +||++++.
T Consensus 111 ~~l~s-g---s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~- 184 (902)
T 2oaj_A 111 DWMLI-G---LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE- 184 (902)
T ss_dssp SEEEE-E---ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-
T ss_pred CEEEE-E---cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-
Confidence 44332 2 3589999999875332 23467999999999999754799999999999 99998763
Q ss_pred CCcccccceeeecc------------------ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 164 ENRVIDAKTIFTGH------------------TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 164 ~~~~~~~~~~~~~h------------------~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
+...+.+| ...|. +++|+|+ +.+|++|+.||+|++||++++.
T Consensus 185 ------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~---~v~fspd-g~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 185 ------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVI---QSLYHPN-SLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp ------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEE---EEEECTT-SSEEEEEETTCCEEEEETTTCC
T ss_pred ------eEEEEecccCCcCCCcccccccccccCCCeE---EEEEcCC-CCEEEEEECCCeEEEEECCCCc
Confidence 33444444 56675 9999999 9999999999999999998863
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=2.2e-27 Score=212.39 Aligned_cols=273 Identities=12% Similarity=0.105 Sum_probs=187.6
Q ss_pred hhhhhhhhhcCcchheeecccc---cccCceeeEecCC----cccccCCCCccccccCcceeeeccccCCC-CCcEEEEE
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHA---LEWPSLTAQWLPD----VTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIAS 88 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~p~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 88 (368)
++..++|+.........+..+. ...++.+++|+|+ +++|++|+.||.+.+|+.. .+...... .....|.+
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~ 120 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI--TMQCIKHYVGHGNAINE 120 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT--TCCEEEEEESCCSCEEE
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch--hceEeeeecCCCCcEEE
Confidence 3457888887665544444433 4567999999999 6789999999999777544 23222221 12345778
Q ss_pred EecCCCccccccCCcccCCCCcccCCCCCe-eeeecc---ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCC
Q psy4579 89 VQLPNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASN---YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE 164 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~---~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 164 (368)
+.+.+.+....+++ +.||.|++|+... +....+ ..|...|.+++|+|++ .+|++++.||.|++||++++...
T Consensus 121 ~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 121 LKFHPRDPNLLLSV---SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp EEECSSCTTEEEEE---ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHH
T ss_pred EEECCCCCCEEEEE---eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccc
Confidence 88865333333333 3589999999875 333333 5799999999999998 89999999999999999865311
Q ss_pred Ccc---------------------cccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCc----
Q psy4579 165 NRV---------------------IDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENR---- 219 (368)
Q Consensus 165 ~~~---------------------~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---- 219 (368)
... ........+|...|. +++|+ +++|++++.||.|++||+++......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD---CVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC---EEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEE---EEEEc---CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence 000 001223344888886 99998 56999999999999999987643111
Q ss_pred ---cccceeeeecccccEeEEEEeee----cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce-
Q psy4579 220 ---VIDAKTIFTGHTAVVEDYSIHRL----ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI- 291 (368)
Q Consensus 220 ---~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~- 291 (368)
....+..+.+|...|.+++|++. .+++++.++.+++| +..+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw----------------------------d~~~~~~~ 322 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW----------------------------DLEVEDPH 322 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE----------------------------ECCSSSGG
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE----------------------------ECCCCCCc
Confidence 11235667778888988888753 44555544444443 3333321
Q ss_pred ---eeeeecCc--ccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 292 ---EIEIKINH--EGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 292 ---~~~~~~~h--~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
...+. +| ...|++++|+|++ .+|++|+.||.|++||+.
T Consensus 323 ~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 KAKCTTLT-HHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GCEEEEEC-CTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC-
T ss_pred cccceEEc-ccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEec
Confidence 12333 55 7999999999999 688899999999999985
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=2.7e-26 Score=206.06 Aligned_cols=245 Identities=8% Similarity=0.036 Sum_probs=170.1
Q ss_pred CceeeEecC---------CcccccCCCCccccccCcceeeecc-------ccCC-CCCcEEEEEEecCCCcccc-ccCCc
Q psy4579 42 PSLTAQWLP---------DVTSVQLPNEDAQFDASNYDTDKGT-------HTSD-EQNHLLIASVQLPNEDAQF-DASNY 103 (368)
Q Consensus 42 ~~~~~~~~p---------~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~ 103 (368)
.+.++++.+ ++.+|+.++.++.+++|......+. .... .....++..+.|.+++..+ .+++
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~- 153 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS- 153 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES-
T ss_pred ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC-
Confidence 455666654 3556777778888866654322110 0011 1122346667776655443 2333
Q ss_pred ccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceec
Q psy4579 104 DTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEV 183 (368)
Q Consensus 104 ~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 183 (368)
+.|++|++||...........|...|++++|+|+| ++|++++.|+ +++|+..++... ......+|...++
T Consensus 154 --~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~-----~~~~~~~~~~~v~- 223 (365)
T 4h5i_A 154 --KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCI-----ARKTDFDKNWSLS- 223 (365)
T ss_dssp --CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEE-----EEECCCCTTEEEE-
T ss_pred --CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC-ceEEecccee-EEEEEeccCcce-----eeeecCCCCCCEE-
Confidence 45899999998865555556788999999999999 9999998554 556666555321 1234567888886
Q ss_pred ceeeEEeCCCCCeEEEeeCCC----cEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecccccCCCCccceEE
Q psy4579 184 RYGLSWNPSLNGYLLSASDDH----TICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LILGTHTSDEQNHLLI 257 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~d~~~~~~~ 257 (368)
+++|+|+ +.++++++.|+ .+++||+...... ......+.+|...|++++|+| .++++++.|+.
T Consensus 224 --~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~----- 292 (365)
T 4h5i_A 224 --KINFIAD-DTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS----- 292 (365)
T ss_dssp --EEEEEET-TEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-----
T ss_pred --EEEEcCC-CCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-----
Confidence 9999999 89999999887 6888998765211 112345778999999999986 34455544444
Q ss_pred EEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 258 ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 258 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+.+|+..+++++..+..+|...|++++|+|++ .+|||||.|++|+|||+..
T Consensus 293 -----------------------V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 293 -----------------------IALVKLKDLSMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -----------------------EEEEETTTTEEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCT
T ss_pred -----------------------EEEEECCCCcEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCC
Confidence 44455556777777666899999999999999 6889999999999999964
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=1.6e-25 Score=206.44 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=212.9
Q ss_pred hhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCC-CCcEEEEEEecCCCccccc
Q psy4579 21 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDE-QNHLLIASVQLPNEDAQFD 99 (368)
Q Consensus 21 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 99 (368)
++|+...+.....+..|. ...+.+ +.+++++|++|+.||.+++|+.. .+...... .....|.++.+.. . ..
T Consensus 101 ~~w~~~~~~~~~~l~~h~-~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~--~-~l 172 (445)
T 2ovr_B 101 TNWRRGELKSPKVLKGHD-DHVITC--LQFCGNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMRD--N-II 172 (445)
T ss_dssp HHHHHSCCCCCEEEECST-TSCEEE--EEEETTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEET--T-EE
T ss_pred hcccCCCcceeEEecccC-CCcEEE--EEEcCCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEecC--C-EE
Confidence 467776654444444332 122334 55578999999999999777654 33322221 1122355555542 1 22
Q ss_pred cCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc
Q psy4579 100 ASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 178 (368)
Q Consensus 100 ~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~ 178 (368)
+++ +.||.|++|+... +....+.+|...|.+++|++ +.+++|+.||+|++||+.++. ....+.+|.
T Consensus 173 ~s~---~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~ 239 (445)
T 2ovr_B 173 ISG---STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQ-------CLHVLMGHV 239 (445)
T ss_dssp EEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCC-------EEEEEECCS
T ss_pred EEE---eCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCc-------EEEEEcCCc
Confidence 222 4689999999864 56667788999999999963 689999999999999998764 567888999
Q ss_pred cceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEE
Q psy4579 179 AVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIA 258 (368)
Q Consensus 179 ~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~ 258 (368)
..+. +++| + +.++++|+.||.|++||++++ .++..+.+|...|.+++|+...+.+++.|+.+++|..
T Consensus 240 ~~v~---~~~~--~-~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 240 AAVR---CVQY--D-GRRVVSGAYDFMVKVWDPETE-------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp SCEE---EEEE--C-SSCEEEEETTSCEEEEEGGGT-------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEET
T ss_pred ccEE---EEEE--C-CCEEEEEcCCCEEEEEECCCC-------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEEC
Confidence 9996 8988 4 788999999999999999886 4577888999999999998888888888888888742
Q ss_pred Ee-----ecCCc----------ccccccccccCCCCCcccccCCCCceeeeeec--CcccceeEEEEeCCCCcEEEEecC
Q psy4579 259 SV-----QLPNE----------DAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI--NHEGEVNRARYMPQNPCVIATKTP 321 (368)
Q Consensus 259 ~~-----~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~lasgs~ 321 (368)
.. .+... +..+... ...+.+.+|+..+++....+.. .|...|.+++|++ .+|++|+.
T Consensus 307 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~ 380 (445)
T 2ovr_B 307 ETGNCIHTLTGHQSLTSGMELKDNILVSG---NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSD 380 (445)
T ss_dssp TTCCEEEEECCCCSCEEEEEEETTEEEEE---ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEET
T ss_pred CCCCEEEEEcCCcccEEEEEEeCCEEEEE---eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeC
Confidence 11 01111 1111111 2346788899988887776652 3889999999963 57889999
Q ss_pred CCeEEEEECCCCCCCCCCCCCCCCceee-----ecccCceeeecceeeee
Q psy4579 322 SSDVLVFDYTKHPSKPDPNGECHPDLRL-----RGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 322 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~l~w~p~~~ 366 (368)
||.|++||++. ...+..+ .+|.+.|++++|+|...
T Consensus 381 dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 381 DGTVKLWDLKT----------GEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp TSEEEEEETTT----------CCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred CCeEEEEECCC----------CceeeeeeccccCCCCceEEEEEecCCEE
Confidence 99999999975 2333344 47899999999999753
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.3e-26 Score=199.59 Aligned_cols=254 Identities=16% Similarity=0.172 Sum_probs=187.8
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceee-eccccCC-CCCcEEEEEEecCCC
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTD-KGTHTSD-EQNHLLIASVQLPNE 94 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~ 94 (368)
+...++|+.........+..+ ..++.+++|+|+++.+++++.++.+.+|+.... .+..... ......+.++.+.
T Consensus 38 dg~v~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 113 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYTG--QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-- 113 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--
T ss_pred CCcEEEEECCCCEEEEEeecC--CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--
Confidence 456788988776655555444 678999999999999999999999866643222 1111111 1122345666662
Q ss_pred ccccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecC-CCCCeeEEEeCCCcEEEEeCCCCCCCCccccccee
Q psy4579 95 DAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 173 (368)
Q Consensus 95 ~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~ 173 (368)
+..+ +.+ +.||.|++|+ .......+..|...|.+++|+| ++ +.+++++.||.|++||... ....
T Consensus 114 ~~~l-~~~---~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~---------~~~~ 178 (313)
T 3odt_A 114 DGVV-ISG---SWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDK---------VIKT 178 (313)
T ss_dssp TTEE-EEE---ETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTE---------EEEE
T ss_pred CCEE-EEE---eCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCc---------eEEE
Confidence 2222 222 3589999999 5566667778999999999998 65 8999999999999999432 3466
Q ss_pred eec-cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-cccccCCCC
Q psy4579 174 FTG-HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-ILGTHTSDE 251 (368)
Q Consensus 174 ~~~-h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~d~ 251 (368)
+.. |...+. +++|+|+ +. +++++.||.|++||++++ .++..+.+|...|.+++|++. .+.+++.
T Consensus 179 ~~~~~~~~i~---~~~~~~~-~~-~~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~-- 244 (313)
T 3odt_A 179 FSGIHNDVVR---HLAVVDD-GH-FISCSNDGLIKLVDMHTG-------DVLRTYEGHESFVYCIKLLPNGDIVSCGE-- 244 (313)
T ss_dssp ECSSCSSCEE---EEEEEET-TE-EEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECTTSCEEEEET--
T ss_pred EeccCcccEE---EEEEcCC-Ce-EEEccCCCeEEEEECCch-------hhhhhhhcCCceEEEEEEecCCCEEEEec--
Confidence 666 888886 9999997 55 999999999999999887 457788889999999999862 2222222
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.+.+.+|+..+++....+. .|...|.+++|+|++ .++ +++.||.|++||++
T Consensus 245 --------------------------dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~-~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 245 --------------------------DRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNG-DII-VGSSDNLVRIFSQE 295 (313)
T ss_dssp --------------------------TSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTS-CEE-EEETTSCEEEEESC
T ss_pred --------------------------CCEEEEEECCCCceeEEEe-ccCceEEEEEEccCC-CEE-EEeCCCcEEEEeCC
Confidence 2335555666676666665 789999999999999 455 78999999999998
Q ss_pred C
Q psy4579 332 K 332 (368)
Q Consensus 332 ~ 332 (368)
.
T Consensus 296 ~ 296 (313)
T 3odt_A 296 K 296 (313)
T ss_dssp G
T ss_pred C
Confidence 6
No 92
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=7.1e-26 Score=220.30 Aligned_cols=222 Identities=18% Similarity=0.172 Sum_probs=168.3
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCCe------eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEe
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA------QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWD 157 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 157 (368)
..|.++.+++.+..+.+++ +.||+|++|+... .....+.+|...|.+++|+|++ ++|++|+.||+|++||
T Consensus 383 ~~V~~v~~~~~~~~~l~s~---s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSA---SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWD 458 (694)
T ss_dssp SCEEEEECCTTCCSEEEEE---ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred ceeEEEEecCCCCCEEEEE---eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEE
Confidence 3577888876554444443 4699999998753 2345677899999999999999 9999999999999999
Q ss_pred CCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE
Q psy4579 158 INATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
+.++. ....+.+|...|. +++|+|+ +.+|+||+.|++|++||+..... ........+|...|.++
T Consensus 459 ~~~~~-------~~~~~~~h~~~v~---~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 459 LAAGV-------STRRFVGHTKDVL---SVAFSLD-NRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRDWVSCV 523 (694)
T ss_dssp TTTTE-------EEEEEECCSSCEE---EEEECTT-SSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSSCEEEE
T ss_pred CCCCc-------ceeEEeCCCCCEE---EEEEeCC-CCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCCcEEEE
Confidence 98764 4678899999996 9999998 89999999999999999865411 00111224688899999
Q ss_pred EEeee----cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCC
Q psy4579 238 SIHRL----ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP 313 (368)
Q Consensus 238 ~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 313 (368)
+|++. .+.+++.|+.+++ |++.+++....+. +|.+.|++++|+|++
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~v----------------------------wd~~~~~~~~~~~-~h~~~v~~v~~spdg- 573 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKV----------------------------WNLSNCKLRSTLA-GHTGYVSTVAVSPDG- 573 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEE----------------------------EETTTCCEEEEEC-CCSSCEEEEEECTTS-
T ss_pred EEeCCCCcceEEEEeCCCeEEE----------------------------EECCCCcEEEEEc-CCCCCEEEEEEeCCC-
Confidence 99862 3444444444444 4444455555554 899999999999999
Q ss_pred cEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 314 CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 314 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
.+|++|+.||+|++||++. ...+..+ .+...|.+++|+|+.
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~----------~~~~~~~-~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAE----------GKKLYSL-EANSVIHALCFSPNR 614 (694)
T ss_dssp SEEEEEETTSBCEEEETTT----------TEEEECC-BCSSCEEEEEECSSS
T ss_pred CEEEEEeCCCeEEEEECCC----------CceEEEe-cCCCcEEEEEEcCCC
Confidence 6888999999999999975 2333333 345689999999874
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=1.9e-26 Score=208.98 Aligned_cols=262 Identities=9% Similarity=0.031 Sum_probs=188.0
Q ss_pred hhhhhhhhhcCcc------hheeecccccccCceeeEecCC----c---ccccCCCCccccccCcceeeec-----cccC
Q psy4579 17 NEEYKIWKKNTPF------LYDLVMTHALEWPSLTAQWLPD----V---TSVQLPNEDAQFDASNYDTDKG-----THTS 78 (368)
Q Consensus 17 ~~~~~~w~~~~~~------~~~~~~~~~~~~~~~~~~~~p~----~---~~l~~~~~~~~~~~~~~~~~~~-----~~~~ 78 (368)
+...++|+..... +...+. ...-++.+++|+|+ + ++|++++.|+.+.+|+...... ....
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 112 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 112 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence 4467788887765 333333 34568999999999 9 9999999999996665443321 1111
Q ss_pred C-CCC---cEEEEEEecC----CCccc-cccCCcccCCCCcccCCCCCe------e-eee-----cc-------ccCCCC
Q psy4579 79 D-EQN---HLLIASVQLP----NEDAQ-FDASNYDTDKGGNVQLPNEDA------Q-FDA-----SN-------YDTDKG 130 (368)
Q Consensus 79 ~-~~~---~~~i~~~~~~----~~~~~-~~~~~~~~~~~g~i~i~~~~~------~-~~~-----~~-------~~h~~~ 130 (368)
. ... ...|.++.+. +.... +.+. +.||.|++|+... . ... .+ ..|...
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVAT----DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 188 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEE----ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEE----eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence 1 111 2457777776 54444 3332 3589999999765 2 222 33 448999
Q ss_pred ceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec---c---ccceecceeeEEeCCCCCeEEEeeCC-
Q psy4579 131 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG---H---TAVVEVRYGLSWNPSLNGYLLSASDD- 203 (368)
Q Consensus 131 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~i~~~p~~~~~l~s~s~d- 203 (368)
|.+++|+|++ +|++|+.||.|++||+++.. +...+.. | ...+. +++|+|+ +.+|++++.|
T Consensus 189 i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~h~~~~~~i~---~i~~~~~-~~~l~~~~~d~ 255 (397)
T 1sq9_A 189 ATSVDISERG--LIATGFNNGTVQISELSTLR-------PLYNFESQHSMINNSNSIR---SVKFSPQ-GSLLAIAHDSN 255 (397)
T ss_dssp CCEEEECTTS--EEEEECTTSEEEEEETTTTE-------EEEEEECCC---CCCCCEE---EEEECSS-TTEEEEEEEET
T ss_pred ceEEEECCCc--eEEEEeCCCcEEEEECCCCc-------eeEEEeccccccccCCccc---eEEECCC-CCEEEEEecCC
Confidence 9999999997 99999999999999998753 5677777 8 88886 9999998 9999999999
Q ss_pred --CcEEEEECCCCCCCCccccceeeeec-------------ccccEeEEEEee--ecccccCCCCccceEEEEeecCCcc
Q psy4579 204 --HTICLWDINATPKENRVIDAKTIFTG-------------HTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNED 266 (368)
Q Consensus 204 --g~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (368)
|.|++||++++ .++..+.+ |...|.+++|++ ..+.+++.|+.+++|
T Consensus 256 ~~g~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw---------- 318 (397)
T 1sq9_A 256 SFGCITLYETEFG-------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW---------- 318 (397)
T ss_dssp TEEEEEEEETTTC-------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE----------
T ss_pred CCceEEEEECCCC-------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE----------
Confidence 99999999886 45667777 999999999985 345555555544444
Q ss_pred cccccccccCCCCCcccccCCCCceeeeee--------------------cCcccceeEEEEeCCCC---------cEEE
Q psy4579 267 AQFDASNYDTDKGDFGGFGSVSGKIEIEIK--------------------INHEGEVNRARYMPQNP---------CVIA 317 (368)
Q Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------------------~~h~~~i~~~~~~p~~~---------~~la 317 (368)
+..+++....+. ..|...|.+++|+|++. .+|+
T Consensus 319 ------------------d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 319 ------------------DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp ------------------ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred ------------------EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 233333333332 12489999999999973 4888
Q ss_pred EecCCCeEEEEECCC
Q psy4579 318 TKTPSSDVLVFDYTK 332 (368)
Q Consensus 318 sgs~Dg~i~iwd~~~ 332 (368)
+|+.||.|++||++.
T Consensus 381 s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 381 CVCLDRSIRWFREAG 395 (397)
T ss_dssp EEETTTEEEEEEEEC
T ss_pred EecCCCcEEEEEcCC
Confidence 999999999999864
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=2.5e-25 Score=195.31 Aligned_cols=261 Identities=19% Similarity=0.198 Sum_probs=186.4
Q ss_pred ceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe-ee
Q psy4579 43 SLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-QF 120 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~ 120 (368)
..+++|+|++ .||+| .|++|++|+.......+... ......|.++.+.+.+..+..+ +.||.|++|+... +.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sg----s~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG----TSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEE----ECCCcEEEeecCCcee
Confidence 4568999986 67766 57888766544322222222 2333468888887665544332 3689999999874 55
Q ss_pred eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEe
Q psy4579 121 DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200 (368)
Q Consensus 121 ~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~ 200 (368)
.....+|...+.++.+. + ..+++|+.++.+++|+...... ....+.+|...+. .+.|+++ +.+|+++
T Consensus 102 ~~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~-~~~l~s~ 168 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEH------HVATLSGHSQEVC---GLRWAPD-GRHLASG 168 (318)
T ss_dssp EEEEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSC------EEEEEECCSSCEE---EEEECTT-SSEEEEE
T ss_pred EEEecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCce------eEEEEcCccCceE---EEEEcCC-CCEEEEE
Confidence 66778899888877665 3 7899999999999999887643 4577889999985 9999998 8999999
Q ss_pred eCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-----cccccCCCCccceEEEEeecCCccccccccccc
Q psy4579 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-----ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 275 (368)
Q Consensus 201 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d 275 (368)
+.||+|++||++++.... ........+...|.++.+.+. .+++++.++.
T Consensus 169 ~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------------- 222 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH----------------------- 222 (318)
T ss_dssp ETTSCEEEEESSCBTTBS---CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-----------------------
T ss_pred ecCcceeEEECCCCcccc---cceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-----------------------
Confidence 999999999998864322 223445567788888888641 1122222222
Q ss_pred CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEE-EecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC
Q psy4579 276 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIA-TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK 354 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~ 354 (368)
+.+|+.......... .|...+..+.|+|.+..+++ +|+.|+.|++||++. ..++..+.||.+
T Consensus 223 -----i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----------~~~~~~l~gH~~ 285 (318)
T 4ggc_A 223 -----IRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----------MAKVAELKGHTS 285 (318)
T ss_dssp -----EEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT----------CCEEEEECCCSS
T ss_pred -----EEEEecccccccccc--cceeeeeeeeecccccceEEEEEcCCCEEEEEECCC----------CcEEEEEcCCCC
Confidence 333333334433332 57788999999999865553 356899999999975 566778999999
Q ss_pred ceeeecceeee
Q psy4579 355 EGLIEGTYNCY 365 (368)
Q Consensus 355 ~V~~l~w~p~~ 365 (368)
.|++++|+|+.
T Consensus 286 ~V~~l~~spdg 296 (318)
T 4ggc_A 286 RVLSLTMSPDG 296 (318)
T ss_dssp CEEEEEECTTS
T ss_pred CEEEEEEcCCC
Confidence 99999999975
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=204.38 Aligned_cols=266 Identities=9% Similarity=0.030 Sum_probs=184.5
Q ss_pred cccccCceeeEecCC---cccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCccc
Q psy4579 37 HALEWPSLTAQWLPD---VTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQ 112 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~ 112 (368)
..+.-++.+++|+|+ +++|++|+.||.+++|+.+......... ......|.++.|.+.+..+.+. +.||.|+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~v~ 111 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA----SCDKTAK 111 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE----cCCCcEE
Confidence 345678999999999 6999999999999777654311111011 1122347777886654444332 3589999
Q ss_pred CCCCCeeeeeccccCCCCceeeEe--cCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 113 LPNEDAQFDASNYDTDKGGYGLSW--NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 113 i~~~~~~~~~~~~~h~~~v~~l~~--sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
+|+...........|...|++++| +|++ .+|++++.||.|++||++++. +...+..|.... ++.+.
T Consensus 112 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~----~~~~~ 179 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSN-------PMMVLQLPERCY----CADVI 179 (368)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSS-------CSEEEECSSCEE----EEEEE
T ss_pred EEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCc-------EEEEEecCCCce----EEEec
Confidence 999987666678889999999999 8888 899999999999999998764 456677665433 66665
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee------ecccccCCCCccceEEEEeecCC
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR------LILGTHTSDEQNHLLIASVQLPN 264 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~~~~~~~d~~~~~~~~~~~~~~ 264 (368)
...+++++.|+.+++||++...... ......+...+.++.+.+ ..+.+++.++.+++|...
T Consensus 180 ---~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~----- 246 (368)
T 3mmy_A 180 ---YPMAVVATAERGLIVYQLENQPSEF-----RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN----- 246 (368)
T ss_dssp ---TTEEEEEEGGGCEEEEECSSSCEEE-----EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS-----
T ss_pred ---CCeeEEEeCCCcEEEEEeccccchh-----hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC-----
Confidence 4578899999999999998763211 111112333444444432 225555555555554332
Q ss_pred cccccccccccCCCCCcccccCCCC---ceeeeee-----------cCcccceeEEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 265 EDAQFDASNYDTDKGDFGGFGSVSG---KIEIEIK-----------INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 265 ~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~-----------~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
.. .....+. .+|...|++++|+|++ .+|++|+.||.|++||+
T Consensus 247 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 247 -----------------------PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDK 302 (368)
T ss_dssp -----------------------CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEET
T ss_pred -----------------------CCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEEC
Confidence 11 1112222 1334489999999999 67889999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 331 TKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+. ..++..+.+|...|.+++|+|+.
T Consensus 303 ~~----------~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 303 DA----------RTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp TT----------TEEEEECCCCSSCEEEEEECTTS
T ss_pred CC----------CcEEEEecCCCCCceEEEECCCC
Confidence 75 44556788999999999999975
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-26 Score=224.45 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=187.4
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCC-ccccccCCcccCCCCcccCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNE-DAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+.-+|.+++|+|+++++++|+.||.+.+|+.....+..... ......|.++.+.+. +....+++ +.||.|++|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~---s~Dg~I~vwd 83 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVLIWK 83 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE---ETTSCEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEE---eCCCeEEEEE
Confidence 356789999999999999999999999777654223333222 222345788888433 23333333 3589999999
Q ss_pred CCee---eeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 116 EDAQ---FDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 116 ~~~~---~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
.... .......|...|++++|+|+ + ..+++|+.||.|++||+.+.... ....+.+|...|. +++|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~-----~~~~~~~~~~~v~---~l~~~ 154 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT-----SPIIIDAHAIGVN---SASWA 154 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCC-----CCEEEECCSSCEE---EEEEC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCc-----ceeEeecCCCceE---EEEec
Confidence 8653 55667789999999999999 7 89999999999999999876432 3456788999996 99999
Q ss_pred CC------------CCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-----cccccCCCCcc
Q psy4579 191 PS------------LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-----ILGTHTSDEQN 253 (368)
Q Consensus 191 p~------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~d~~~ 253 (368)
|. ++.++++|+.||.|++||++++... ..+...+.+|...|.+++|+|. .+.+++.|+.+
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT---YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTE---EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc---ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 94 3889999999999999999876432 1345677889999999999853 56666666666
Q ss_pred ceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 254 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++|...... ... .........|...|.+++|+|++ .+|++|+.||.|++||++.
T Consensus 232 ~iwd~~~~~----~~~--------------------~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 232 IIWTQDNEQ----GPW--------------------KKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSS----SCC--------------------BCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCS
T ss_pred EEecCCCCC----Ccc--------------------eeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCC
Confidence 665432100 000 00011112688999999999999 5778999999999999984
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.1e-27 Score=216.41 Aligned_cols=296 Identities=12% Similarity=0.091 Sum_probs=179.7
Q ss_pred hhhhhhhhhcC---cchheeecccccccCceeeEecCCcccccCCCCccccccCcceee-eccccCCCCCcEEEEEEecC
Q psy4579 17 NEEYKIWKKNT---PFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTD-KGTHTSDEQNHLLIASVQLP 92 (368)
Q Consensus 17 ~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~ 92 (368)
+...++|+... ...+.......+..++.+++|+|+++.|++++.|+.+++|+.+.. .+........ ..+..+.+.
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~i~~~~~~ 163 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC-ECIRKINLK 163 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE-EEEEEEEGG
T ss_pred CceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc-ceeEEEEcc
Confidence 45677887765 333333333346789999999999999999999999977765422 2211111110 123333332
Q ss_pred C---------------CccccccCCcccCCCCcccCCCCCe-eeeecccc--CCCCceeeEecCCCCCeeEEEeCCCcEE
Q psy4579 93 N---------------EDAQFDASNYDTDKGGNVQLPNEDA-QFDASNYD--TDKGGYGLSWNPSLNGYLLSASDDHTIC 154 (368)
Q Consensus 93 ~---------------~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~ 154 (368)
+ .+....+.+ +.||.|++|+... +....+.. |.+.|++++|+|++ .+|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~ 239 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVAL---TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIID 239 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEE---ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEE
Confidence 1 112222222 4589999999864 44555555 89999999999998 9999999999999
Q ss_pred EEeCCCCCCCCcccccceeee-ccccceecceeeEEeCC---CCCeEEEeeCCCcEEEEECCCCCCCCccc---------
Q psy4579 155 LWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSWNPS---LNGYLLSASDDHTICLWDINATPKENRVI--------- 221 (368)
Q Consensus 155 iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------- 221 (368)
+||++++. +...+. .|..+|. +++|+|. ++.+|++|+.||.|++||++++.....+.
T Consensus 240 iwd~~~~~-------~~~~~~~~~~~~v~---~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 240 IWDIRFNV-------LIRSWSFGDHAPIT---HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp EEETTTTE-------EEEEEBCTTCEEEE---EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred EEEcCCcc-------EEEEEecCCCCceE---EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 99998753 455554 7777885 9977653 26699999999999999998763211000
Q ss_pred --cce------eeeec--ccccEeEEEEee-ecccccCCCCccceEEEEeec-----CC---cccccccccccCCCCCcc
Q psy4579 222 --DAK------TIFTG--HTAVVEDYSIHR-LILGTHTSDEQNHLLIASVQL-----PN---EDAQFDASNYDTDKGDFG 282 (368)
Q Consensus 222 --~~~------~~~~~--~~~~v~~v~~~~-~~~~~~~~d~~~~~~~~~~~~-----~~---~~~~~~~~~~d~~~~~~~ 282 (368)
.+. ..+.+ |...|.+++|++ ..+.+++.|+.+++|...... .. ....+....+... ..+.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 388 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTAN-LTML 388 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETT-EEEE
T ss_pred eecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecc-eEEE
Confidence 000 01223 677788888874 467777777777777432100 00 0000000000000 0000
Q ss_pred --cccCCCCceeeeeecCcccceeEEEEeCC-CCcEEEEecCCCeEEEEE
Q psy4579 283 --GFGSVSGKIEIEIKINHEGEVNRARYMPQ-NPCVIATKTPSSDVLVFD 329 (368)
Q Consensus 283 --~~~~~~~~~~~~~~~~h~~~i~~~~~~p~-~~~~lasgs~Dg~i~iwd 329 (368)
.++...+... .....|...|++++|+++ +..+|+||+.||.|+||+
T Consensus 389 ~~~~~~~~~~~~-~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 389 LRKMKRTSTHSV-DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEeccccccccc-CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0001111111 111259999999999998 236899999999999995
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=8.7e-26 Score=233.20 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=198.5
Q ss_pred ccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 38 ALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 38 ~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
.+..++.+++|+|+++++++|+.||.+.+|+. ..+..... ......|.++.|.+++..+.++ +.||.|++|+.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~d~~v~vwd~ 686 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSDDSYIATC----SADKKVKIWDS 686 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEET
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEEC--CCCCEEEEeccCCCCEEEEEEecCCCEEEEE----eCCCeEEEEEC
Confidence 45678999999999999999999999966654 43433322 1223457788886655444333 35899999998
Q ss_pred Ce-eeeeccccCCCCceeeEecCCC-CCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCC
Q psy4579 117 DA-QFDASNYDTDKGGYGLSWNPSL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 117 ~~-~~~~~~~~h~~~v~~l~~sp~~-~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~ 194 (368)
.. +....+.+|...|.+++|+|++ ..++++|+.||.|++||+.++. ....+.+|.+.|. +++|+|+ +
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~---~~~~sp~-~ 755 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVN---HCRFSPD-D 755 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEE---EEEECSS-T
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEE---EEEEecC-C
Confidence 64 5566777899999999999953 2589999999999999998874 5678889999996 9999998 8
Q ss_pred CeEEEeeCCCcEEEEECCCCCCCCccccceeeeec-------------ccccEeEEEEeeecccccCCCCccceEEEEee
Q psy4579 195 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-------------HTAVVEDYSIHRLILGTHTSDEQNHLLIASVQ 261 (368)
Q Consensus 195 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~ 261 (368)
.+|++|+.||.|++||++++.. ...+.. +...+.+++|++
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------------- 808 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSANE-------RKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-------------------- 808 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGTEE-------EEEEECCCCC--------CCCCCBCCCCBCT--------------------
T ss_pred CEEEEEECCCeEEEEeCCCCcc-------cceecccccccccCCccccccceEEEEEECC--------------------
Confidence 9999999999999999987632 222211 112344444443
Q ss_pred cCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCC
Q psy4579 262 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG 341 (368)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~ 341 (368)
++..+.+. ..+.+.+|+..++........+|...|.+++|+|++ .++++|+.||.|++||+..
T Consensus 809 ---dg~~l~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~--------- 871 (1249)
T 3sfz_A 809 ---DGDKIIVA----AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDS--------- 871 (1249)
T ss_dssp ---TSSEEEEE----ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTT---------
T ss_pred ---CCCEEEEE----cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCC---------
Confidence 11111111 123455666667777777777899999999999999 6888999999999999975
Q ss_pred CCCCceeeecccCceeeecceeee
Q psy4579 342 ECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 342 ~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
...+..+.+|.+.|.+++|+|+.
T Consensus 872 -~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 872 -RLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTS
T ss_pred -CceeeecCCCccceEEEEECCCC
Confidence 44556788999999999999874
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=7.2e-25 Score=199.33 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=162.0
Q ss_pred CCCCcccCCCCCee-----eeeccccCCCCceeeEecC-CCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccc
Q psy4579 106 DKGGNVQLPNEDAQ-----FDASNYDTDKGGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA 179 (368)
Q Consensus 106 ~~~g~i~i~~~~~~-----~~~~~~~h~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 179 (368)
+.+|.|++|+.+.. ....+.+|.+.|++++|+| ++ .+|++|+.||+|++||+.++........+...+.+|..
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 46899999997542 2334668999999999999 76 99999999999999999886432222236788999999
Q ss_pred ceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee--ecccccEeEEEEee--ecccccCCCCccce
Q psy4579 180 VVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVEDYSIHR--LILGTHTSDEQNHL 255 (368)
Q Consensus 180 ~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~--~~~~~~~~d~~~~~ 255 (368)
.|. +++|+|++..+|++|+.||.|++||++++ .+...+ .+|...|.+++|++ ..+.+++.|
T Consensus 133 ~v~---~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 197 (402)
T 2aq5_A 133 RVG---IVAWHPTAQNVLLSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD----- 197 (402)
T ss_dssp CEE---EEEECSSBTTEEEEEETTSCEEEEETTTT-------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----
T ss_pred eEE---EEEECcCCCCEEEEEcCCCEEEEEECCCC-------CccEEEecCCCCCceEEEEECCCCCEEEEEecC-----
Confidence 996 99999984479999999999999999987 456667 77999999999985 233333333
Q ss_pred EEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccc-eeEEEEeCCCCcEEEEe---cCCCeEEEEECC
Q psy4579 256 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGE-VNRARYMPQNPCVIATK---TPSSDVLVFDYT 331 (368)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~~p~~~~~lasg---s~Dg~i~iwd~~ 331 (368)
+.+.+|+..+++....+..+|.+. +.+++|+|++ .+|++| +.|+.|++||++
T Consensus 198 -----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 198 -----------------------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp -----------------------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETT
T ss_pred -----------------------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCc
Confidence 334455555666666663478776 8999999998 788898 899999999998
Q ss_pred CCCCCCCCCCCCCCceee-ecccCceeeecceeee
Q psy4579 332 KHPSKPDPNGECHPDLRL-RGHQKEGLIEGTYNCY 365 (368)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~w~p~~ 365 (368)
... .++... ..|...|.+++|+|..
T Consensus 254 ~~~---------~~~~~~~~~~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 254 HLE---------EPLSLQELDTSSGVLLPFFDPDT 279 (402)
T ss_dssp BCS---------SCSEEEECCCCSSCEEEEEETTT
T ss_pred ccc---------CCceEEeccCCCceeEEEEcCCC
Confidence 521 122222 3678889999999873
No 100
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2e-25 Score=192.93 Aligned_cols=251 Identities=10% Similarity=0.125 Sum_probs=156.1
Q ss_pred hhhhhhcCcchheeecc-cccccCceeeEecC----------------CcccccCCCCccccccCcceeeeccccCCCCC
Q psy4579 20 YKIWKKNTPFLYDLVMT-HALEWPSLTAQWLP----------------DVTSVQLPNEDAQFDASNYDTDKGTHTSDEQN 82 (368)
Q Consensus 20 ~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~p----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (368)
.+.|+.....-...+++ +-++-||+.+.+.| ..+.|+++.+|+.+ ..+....| +
T Consensus 65 v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~--~~~l~s~g-------~ 135 (356)
T 2w18_A 65 VSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESE--KQVLLKSG-------N 135 (356)
T ss_dssp EEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------C--CEEEEEEE-------E
T ss_pred EEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcccc--ccEEEeCC-------C
Confidence 45677777633333333 33456899999999 45556666555443 22222211 1
Q ss_pred cEEEEEEecCCCccccccCCcccCCCCcccCCCCC--eeeeeccccCCCCceeeEecC---CCCCeeEEEeCCCcEEEEe
Q psy4579 83 HLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED--AQFDASNYDTDKGGYGLSWNP---SLNGYLLSASDDHTICLWD 157 (368)
Q Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~--~~~~~~~~~h~~~v~~l~~sp---~~~~~lasg~~dg~v~iwd 157 (368)
...+.. ++ ....+..+. ...|+.|++|+.. ++....+..|...++.++|+| ++ ..||+|+.|++|+|||
T Consensus 136 ~~~v~~--l~-~g~lv~ss~--~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWD 209 (356)
T 2w18_A 136 IKAVLG--LT-KRRLVSSSG--TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWN 209 (356)
T ss_dssp EEEEEE--ET-TTEEEEEES--SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEE
T ss_pred eEEEEe--cC-CCcEEEecc--cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEE
Confidence 122333 23 222222211 1258999999873 577778889999999999999 66 8999999999999999
Q ss_pred CCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeE------------EEeeCCCcEEEEECCCCCCCCcccccee
Q psy4579 158 INATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL------------LSASDDHTICLWDINATPKENRVIDAKT 225 (368)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 225 (368)
+++++ .++++.+|...+..+.+++|+|+ +.++ ++|+.|++|++||..++. .+.
T Consensus 210 l~TGk-------~l~tL~g~~~~v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk-------~l~ 274 (356)
T 2w18_A 210 LKTGQ-------LLKKMHIDDSYQASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL-------SVG 274 (356)
T ss_dssp TTTCC-------EEEEEECCC---CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTE-------EEE
T ss_pred CCCCc-------EEEEEcCCCcceeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCE-------EEE
Confidence 99885 56778776543321237789998 7665 678899999999998872 222
Q ss_pred ee-----ecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcc
Q psy4579 226 IF-----TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE 300 (368)
Q Consensus 226 ~~-----~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~ 300 (368)
.+ .+|...+.+..++..++++++.|+ .+.+||+.+++...++. +|.
T Consensus 275 v~~~~~p~Gh~~~~lsg~~sg~~lASgS~Dg----------------------------TIkIWDl~tGk~l~tL~-gH~ 325 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVKDHCAAAILTSG----------------------------TIAIWDLLLGQCTALLP-PVS 325 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEETTEEEEEETTS----------------------------CEEEEETTTCSEEEEEC-CC-
T ss_pred EEEeeccCCCcceeEccccCCCEEEEEcCCC----------------------------cEEEEECCCCcEEEEec-CCC
Confidence 22 245444433333333333433333 35556666788777776 787
Q ss_pred ccee-EEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 301 GEVN-RARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 301 ~~i~-~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
..+. +++|+|++ .+|+||+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 7655 68999999 68889999999999996
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-25 Score=206.53 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=161.4
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCC--e-eeeeccc--cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNED--A-QFDASNY--DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~--~-~~~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 159 (368)
.|.++.|.+.+..+.+.+ +.||.|++|+.. . .....+. .|...|++++|+|++ .+|++|+.||.|++|++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA---DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEE---GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEE---CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecC
Confidence 377888866655543333 358999999987 3 3333332 678899999999999 999999999999999998
Q ss_pred CCCCCCcccccceeeeccccceecceeeEEeCC--CCCeEEEeeCCCcEEEEECCCCCCCCccccceee-eecccccEeE
Q psy4579 160 ATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS--LNGYLLSASDDHTICLWDINATPKENRVIDAKTI-FTGHTAVVED 236 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~ 236 (368)
+...... +...+.+|...|. +++|+|+ .+.+|++|+.|+.|++||++++. .+.. +.+|...|.+
T Consensus 180 ~~~~~~~---~~~~~~~h~~~v~---~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 180 SIPEEKF---TQEPILGHVSMLT---DVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-------IVDKWLFGHKHFVSS 246 (450)
T ss_dssp SCCCSSC---CCCCSEECSSCEE---EEEEEECTTSCEEEEEEETTSCEEEEEESCTT-------CEEEECCCCSSCEEE
T ss_pred Ccccccc---cceeeecccCceE---EEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-------eeeeeecCCCCceEE
Confidence 7643210 2346788999996 9999996 25689999999999999998763 3444 5589999999
Q ss_pred EEEe-eecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeee-------------------
Q psy4579 237 YSIH-RLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK------------------- 296 (368)
Q Consensus 237 v~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------------- 296 (368)
++|+ ...+.+++.|+.+++|.. .+++....+.
T Consensus 247 ~~~sd~~~l~s~~~d~~v~vwd~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 247 ICCGKDYLLLSAGGDDKIFAWDW----------------------------KTGKNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp EEECSTTEEEEEESSSEEEEEET----------------------------TTCCEEEEEECHHHHGGGCCTTSBC----
T ss_pred EEECCCCEEEEEeCCCeEEEEEC----------------------------CCCcEeeeecchhhhhhhhhhcccccccc
Confidence 9996 445566666666555532 1222211111
Q ss_pred -----cCcccceeEEEEeCCCCcEEEEec-CCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 297 -----INHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 297 -----~~h~~~i~~~~~~p~~~~~lasgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
..+...|.+++|+|++. +|++++ .|+.|++|++... ..+....+..+.+| +.|.+++|+|..
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~-----~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEK-----QKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp ------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSS-----STTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred cccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccC-----CCCceeeccEeccC-CceEEEEecCCc
Confidence 02346799999999995 555655 8999999999210 00112444566777 889999999853
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.1e-25 Score=201.27 Aligned_cols=267 Identities=9% Similarity=0.027 Sum_probs=178.4
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA 118 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~ 118 (368)
++--+.+++|+|+| .++.+.+|. ..+......+....|..+.|++++..+.++. .||.|++|+.++
T Consensus 51 h~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s----~dg~V~iwd~~~ 116 (588)
T 2j04_A 51 NSKNLFHVKEFPLE-------FENKLDFEL---AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLS----NNGNVSVFKDNK 116 (588)
T ss_dssp BGGGTEEEEEECCC-------CCCTTTTSC---CCSSCSSTTSCSCCEEEEEECSSSSCEEEEE----TTSCEEEEETTE
T ss_pred CCccEEEEEECCCC-------CcceEEEEe---CCCceEeecCCCCcEEEEEECCCCCEEEEEe----CCCcEEEEeCCc
Confidence 44568899999999 344443333 2333333323356788999987766555443 689999999766
Q ss_pred eeeeccccCCC-----CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee----eccccceecceeeEE
Q psy4579 119 QFDASNYDTDK-----GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF----TGHTAVVEVRYGLSW 189 (368)
Q Consensus 119 ~~~~~~~~h~~-----~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~i~~ 189 (368)
....+. |.. .|.+++|||+| ++||+|+.||+|+|||+.++......+....++ .+|.+.|. +++|
T Consensus 117 -~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~---sVaw 190 (588)
T 2j04_A 117 -MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT---HIVW 190 (588)
T ss_dssp -EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE---EEEE
T ss_pred -eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE---EEEE
Confidence 333334 554 59999999999 999999999999999998764211100123555 67778884 9999
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee-ecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccc
Q psy4579 190 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ 268 (368)
Q Consensus 190 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 268 (368)
+|+ + +++++.|++|++||+.++... .....+ .+|...|.+++|+...+++++ ++.
T Consensus 191 SPd-g--Laass~D~tVrlWd~~~~~~~----~~~~tL~~~h~~~V~svaFsg~~LASa~-~~t---------------- 246 (588)
T 2j04_A 191 YED-V--LVAALSNNSVFSMTVSASSHQ----PVSRMIQNASRRKITDLKIVDYKVVLTC-PGY---------------- 246 (588)
T ss_dssp ETT-E--EEEEETTCCEEEECCCSSSSC----CCEEEEECCCSSCCCCEEEETTEEEEEC-SSE----------------
T ss_pred cCC-c--EEEEeCCCeEEEEECCCCccc----cceeeecccccCcEEEEEEECCEEEEEe-CCe----------------
Confidence 998 6 888999999999999776310 123445 378889999999733333332 233
Q ss_pred cccccccCCCCCcccccCCCCceeeeeecCcccceeEEEE--eCCCCcEEEEecCCCeEEEEECCCCCCCCCC-------
Q psy4579 269 FDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARY--MPQNPCVIATKTPSSDVLVFDYTKHPSKPDP------- 339 (368)
Q Consensus 269 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~------- 339 (368)
+.+|+...+...... .+|.+.|..++| +|++ ..|+++++||+ ++|......-.+..
T Consensus 247 ------------IkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d 311 (588)
T 2j04_A 247 ------------VHKIDLKNYSISSLK-TGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLE 311 (588)
T ss_dssp ------------EEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHH
T ss_pred ------------EEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcC
Confidence 333444444443333 389999999999 9999 78889999999 99998532111100
Q ss_pred ------CCCCCCceeeecccCceeeecceeee
Q psy4579 340 ------NGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 340 ------~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
.....+...+. +...|++++|||+.
T Consensus 312 ~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG 342 (588)
T 2j04_A 312 KKFKKWSTIWNEFNNYE-TTLVIHGISLSPDG 342 (588)
T ss_dssp HHHHHTTTTTTSSSSSC-CEEEEEEEEECTTS
T ss_pred CEEEEEECCCCceeeec-cceEEEEEEECCCC
Confidence 01112222333 36679999999985
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.5e-25 Score=196.86 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=168.4
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCC---eeeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED---AQFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDI 158 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~---~~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~ 158 (368)
..|.++.+.+....+..+ +.||.|++|+.. .+....+.+|.+.|++++|+|+ + .+|++|+.||.|++||+
T Consensus 12 ~~v~~~~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATC----SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKE 86 (379)
T ss_dssp CCEEEEEECSSSSEEEEE----ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEE
T ss_pred ccEEEEEEcCCCCEEEEE----ECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEc
Confidence 347777786555444333 358999999985 3455667789999999999977 7 89999999999999999
Q ss_pred CCCCCCCcccccceeeeccccceecceeeEEeCCC-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE
Q psy4579 159 NATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
.++.. .....+.+|...+. +++|+|+. +.+|++++.||.|++||++.... .....+.+|...|.++
T Consensus 87 ~~~~~-----~~~~~~~~~~~~v~---~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 87 ENGRW-----SQIAVHAVHSASVN---SVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSA 153 (379)
T ss_dssp ETTEE-----EEEEEECCCSSCEE---EEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----CCEEEEECCTTCEEEE
T ss_pred CCCce-----eEeeeecCCCcceE---EEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----eeeEEecCCCCceEEE
Confidence 87631 14567788999996 99999974 67999999999999999987643 2234567899999999
Q ss_pred EEeee---------------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce---eeeeecCc
Q psy4579 238 SIHRL---------------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI---EIEIKINH 299 (368)
Q Consensus 238 ~~~~~---------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~h 299 (368)
+|+|. .+.+++.++.+++ |+..++.. ......+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i----------------------------~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKI----------------------------WKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEE----------------------------EEEETTTTEEEEEEEECCC
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEE----------------------------EEecCCCcceeeEEEEecc
Confidence 99872 3333333333333 33333321 12222379
Q ss_pred ccceeEEEEeCCC--CcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeeee
Q psy4579 300 EGEVNRARYMPQN--PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 300 ~~~i~~~~~~p~~--~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~~ 366 (368)
...|.+++|+|++ ..+|++++.||.|++||++..... .........+|...|++++|+|+..
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~ 269 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-----WKKTLLKEEKFPDVLWRASWSLSGN 269 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-----CEEEESSSSCCSSCEEEEEECSSSC
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-----ceeeeeccccCCCcEEEEEEcCCCC
Confidence 9999999999993 378999999999999999852100 0111222345899999999999753
No 104
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=3.3e-24 Score=198.57 Aligned_cols=279 Identities=13% Similarity=0.122 Sum_probs=191.6
Q ss_pred hhhhhhcCcchhe-eecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccc
Q psy4579 20 YKIWKKNTPFLYD-LVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQ 97 (368)
Q Consensus 20 ~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 97 (368)
.++|+........ .+..| ....+.++++ +++++++|+.||.+++|+. ..+..... ......|.++.+.+.+ .
T Consensus 102 ~~~w~~~~~~~~~~~l~~h-~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~--~~~~~~~~~~~h~~~V~~l~~~~~~-~ 175 (464)
T 3v7d_B 102 LKNWYNPKFVPQRTTLRGH-MTSVITCLQF--EDNYVITGADDKMIRVYDS--INKKFLLQLSGHDGGVWALKYAHGG-I 175 (464)
T ss_dssp HHHHHCTTCCCEEEEEECC-SSSCEEEEEE--ETTEEEEEETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECSTT-E
T ss_pred HhhhcCCCcCcceEEEcCC-CCCcEEEEEE--CCCEEEEEcCCCcEEEEEC--CCCcEEEEEeCCCcCEEEEEEcCCC-E
Confidence 3567665443222 22222 2222455565 5679999999999976654 33333322 1223457777776544 2
Q ss_pred cccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecC--CCCCeeEEEeCCCcEEEEeCCCCCCCCccc------
Q psy4579 98 FDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNP--SLNGYLLSASDDHTICLWDINATPKENRVI------ 168 (368)
Q Consensus 98 ~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp--~~~~~lasg~~dg~v~iwd~~~~~~~~~~~------ 168 (368)
.+++ +.||+|++|+.+. +....+.+|...|.+++|++ ++ .++++|+.||+|++||+.+........
T Consensus 176 -l~s~---s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 250 (464)
T 3v7d_B 176 -LVSG---STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250 (464)
T ss_dssp -EEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSS
T ss_pred -EEEE---eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcc
Confidence 2222 4599999999864 55666778999999999994 65 899999999999999998764321100
Q ss_pred ----------ccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 169 ----------DAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 169 ----------~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
.....+.+|...+. ++ +++ +.++++|+.||.|++||++++ .++..+.+|...|.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~---~~--~~~-~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 251 LVFHTPEENPYFVGVLRGHMASVR---TV--SGH-GNIVVSGSYDNTLIVWDVAQM-------KCLYILSGHTDRIYSTI 317 (464)
T ss_dssp EEESCGGGCTTEEEEECCCSSCEE---EE--EEE-TTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEE
T ss_pred eEeeccCCCeEEEEEccCccceEE---EE--cCC-CCEEEEEeCCCeEEEEECCCC-------cEEEEecCCCCCEEEEE
Confidence 01456778888774 55 566 889999999999999999886 55778889999999999
Q ss_pred Eeee--cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEE
Q psy4579 239 IHRL--ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVI 316 (368)
Q Consensus 239 ~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~l 316 (368)
|++. .+.+++.|+ .+.+|+..+++....+. +|...|.+++|++ .+|
T Consensus 318 ~~~~~~~l~sg~~dg----------------------------~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~---~~l 365 (464)
T 3v7d_B 318 YDHERKRCISASMDT----------------------------TIRIWDLENGELMYTLQ-GHTALVGLLRLSD---KFL 365 (464)
T ss_dssp EETTTTEEEEEETTS----------------------------CEEEEETTTTEEEEEEC-CCSSCEEEEEECS---SEE
T ss_pred EcCCCCEEEEEeCCC----------------------------cEEEEECCCCcEEEEEe-CCCCcEEEEEEcC---CEE
Confidence 9862 333333333 34445555666666665 8999999999983 578
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 317 ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 317 asgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++|+.||+|++||++. .... ....|...+..++|+|..
T Consensus 366 ~s~s~dg~v~vwd~~~----------~~~~-~~~~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 366 VSAAADGSIRGWDAND----------YSRK-FSYHHTNLSAITTFYVSD 403 (464)
T ss_dssp EEEETTSEEEEEETTT----------CCEE-EEEECTTCCCEEEEEECS
T ss_pred EEEeCCCcEEEEECCC----------Ccee-eeecCCCCccEEEEEeCC
Confidence 8999999999999975 1221 222466677778888764
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=9.9e-25 Score=193.33 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=161.8
Q ss_pred ccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC-CCCeEEEee
Q psy4579 123 SNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS-LNGYLLSAS 201 (368)
Q Consensus 123 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~-~~~~l~s~s 201 (368)
.+.+|.+.|++++|+|++ .+||+|+.||.|++||+.+.... ......+.+|...|. +++|+|. ++.+|++|+
T Consensus 6 ~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~v~---~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSN---WELSDSWRAHDSSIV---AIDWASPEYGRIIASAS 78 (351)
T ss_dssp EECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCC---EEEEEEEECCSSCEE---EEEECCGGGCSEEEEEE
T ss_pred cCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCc---ceecceeccCCCcEE---EEEEcCCCCCCEEEEEc
Confidence 346799999999999998 89999999999999999865322 124567789999996 9999993 289999999
Q ss_pred CCCcEEEEECCCCCCCC--ccccceeeeecccccEeEEEEeee----cccccCCCCccceEEEEeecCC-----------
Q psy4579 202 DDHTICLWDINATPKEN--RVIDAKTIFTGHTAVVEDYSIHRL----ILGTHTSDEQNHLLIASVQLPN----------- 264 (368)
Q Consensus 202 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~d~~~~~~~~~~~~~~----------- 264 (368)
.||.|++||++.+.... +.+.+...+.+|...|.+++|++. .+.+++.|+.+++|........
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 99999999998764321 112346677889999999999864 6778888888888754311100
Q ss_pred -------cccccccccccC------------CCCCcccccCCCCcee-eeeecCcccceeEEEEeCCCC---cEEEEecC
Q psy4579 265 -------EDAQFDASNYDT------------DKGDFGGFGSVSGKIE-IEIKINHEGEVNRARYMPQNP---CVIATKTP 321 (368)
Q Consensus 265 -------~~~~~~~~~~d~------------~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~p~~~---~~lasgs~ 321 (368)
.........+.. ..+.+..++...+... .....+|...|.+++|+|++. .+|++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 000000000100 1112222333333331 222337999999999999973 58889999
Q ss_pred CCeEEEEECCCCCCCCCC------------------------------------CCCCCCceeeecccCceeeecceeee
Q psy4579 322 SSDVLVFDYTKHPSKPDP------------------------------------NGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 322 Dg~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
||.|++||++........ .....++..+.+|.+.|++++|+|+.
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999853211000 00113445567899999999999975
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=6.7e-26 Score=205.57 Aligned_cols=229 Identities=8% Similarity=-0.061 Sum_probs=146.1
Q ss_pred CCCCcccCCCCCee------eeeccccCCCCceeeEecC--------CCCCeeEEEeCCCcEEEEeCCCCCCCCcccccc
Q psy4579 106 DKGGNVQLPNEDAQ------FDASNYDTDKGGYGLSWNP--------SLNGYLLSASDDHTICLWDINATPKENRVIDAK 171 (368)
Q Consensus 106 ~~~g~i~i~~~~~~------~~~~~~~h~~~v~~l~~sp--------~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~ 171 (368)
+.|++|++|+.+.. ....+.+|.+.|++++|+| ++ ++||+|+.|++|+|||++++. +.
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~-------~~ 179 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG-------PI 179 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE-------EE
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc-------ee
Confidence 46999999997642 2345678999999999998 66 899999999999999998763 45
Q ss_pred eeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccc------------------cceeeeeccccc
Q psy4579 172 TIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI------------------DAKTIFTGHTAV 233 (368)
Q Consensus 172 ~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~~~~~ 233 (368)
..+.+|..++. +++|+|++..+|++|+.||+|++||++++....... .......+|...
T Consensus 180 ~~~~~~~~~v~---~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 180 LAGYPLSSPGI---SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEECSSCEE---EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred eeecCCCCCcE---EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 66778888885 999999855689999999999999998864322110 001123457777
Q ss_pred EeEEEEee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 234 VEDYSIHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 234 v~~v~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
+.++.|.+ ..+.+++.|+.+++|..... .....+..... .+.... -.........+...+. +.|+|
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~--~~~~~l~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~-~~~~~ 325 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFAN--NDYNEISDSTM-----KLGPKN---LLPNVQGISLFPSLLG-ACPHP 325 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------C---CSCSEEEECSSCCSSC-CEECS
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccC--CCCceEeeecC-----ccccEE---EccccccccccCccee-EEEcc
Confidence 88888762 45566666666666643221 11111110000 000000 0000111112333333 44444
Q ss_pred -CCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeeee
Q psy4579 311 -QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 311 -~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~~ 366 (368)
.+..++++|+.||+|++||+.. ..+...+.+|..+|.+++|||...
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~----------~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYE----------KDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTC----------TTCCEEEEECSSCEEEEEECTTSS
T ss_pred CCCCEEEEEECCCCEEEEEECCC----------CcEEEEecCCCCcEEEEEEcCCCC
Confidence 4446788899999999999975 344556788999999999999764
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=2.8e-25 Score=204.22 Aligned_cols=258 Identities=17% Similarity=0.266 Sum_probs=187.4
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 95 (368)
+...++|+..+..+...+.. +..++.+++| +++.|++|+.||.+.+|+.. .+..... ......|.++.+.+.
T Consensus 152 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~- 224 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILTG--HTGSVLCLQY--DERVIITGSSDSTVRVWDVN--TGEMLNTLIHHCEAVLHLRFNNG- 224 (435)
T ss_dssp SSCEEEEESSSCCEEEEECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEESS--SCCEEEEECCCCSCEEEEECCTT-
T ss_pred CCeEEEEeCCCCeEEEEEcC--CCCcEEEEEE--CCCEEEEEcCCCeEEEEECC--CCcEEEEEcCCCCcEEEEEEcCC-
Confidence 44677888877666555543 3568899999 88999999999999766544 3333222 112234667777432
Q ss_pred cccccCCcccCCCCcccCCCCCeee----eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccc
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDAQF----DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK 171 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~ 171 (368)
.+. ++ +.||.|++|+..... .....+|...|.+++| ++ ++|++|+.||.|++||++++. ..
T Consensus 225 -~l~-s~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~-------~~ 289 (435)
T 1p22_A 225 -MMV-TC---SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCE-------FV 289 (435)
T ss_dssp -EEE-EE---ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCC-------EE
T ss_pred -EEE-Ee---eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCc-------EE
Confidence 222 22 468999999986432 2456789999999999 45 899999999999999998874 56
Q ss_pred eeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCC
Q psy4579 172 TIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDE 251 (368)
Q Consensus 172 ~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~ 251 (368)
..+.+|...+. +++|+ +.++++|+.||.|++||++++ .++..+.+|...|.+++|++..+.+++.|+
T Consensus 290 ~~~~~~~~~v~---~~~~~---~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg 356 (435)
T 1p22_A 290 RTLNGHKRGIA---CLQYR---DRLVVSGSSDNTIRLWDIECG-------ACLRVLEGHEELVRCIRFDNKRIVSGAYDG 356 (435)
T ss_dssp EEEECCSSCEE---EEEEE---TTEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEECCSSEEEEEETTS
T ss_pred EEEcCCCCcEE---EEEeC---CCEEEEEeCCCeEEEEECCCC-------CEEEEEeCCcCcEEEEEecCCEEEEEeCCC
Confidence 78889999995 88884 679999999999999999987 457788899999999999888888888888
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.+++|......... .. ........+ .+|.+.|.+++| ++ ..|++|+.||+|++||+.
T Consensus 357 ~i~vwd~~~~~~~~----------~~---------~~~~~~~~~-~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 357 KIKVWDLVAALDPR----------AP---------AGTLCLRTL-VEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp CEEEEEHHHHTSTT----------SC---------TTTTEEEEE-CCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC--
T ss_pred cEEEEECCCCCCcc----------cc---------ccchheeec-cCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECC
Confidence 77777543111000 00 001123333 389999999999 55 567899999999999997
Q ss_pred C
Q psy4579 332 K 332 (368)
Q Consensus 332 ~ 332 (368)
.
T Consensus 414 ~ 414 (435)
T 1p22_A 414 N 414 (435)
T ss_dssp -
T ss_pred C
Confidence 5
No 108
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=4.3e-24 Score=192.81 Aligned_cols=241 Identities=13% Similarity=0.087 Sum_probs=172.1
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCCeee---eeccccCCCCceeeEecC-CCCCeeEEEeCCCcEEEEeCC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF---DASNYDTDKGGYGLSWNP-SLNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~---~~~~~~h~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~~ 159 (368)
..|.++.+.+.+..+.+++ +.||.|++|+..... .....+|...|.+++|+| ++ .+|++++.||.|++||++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVG---SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp SCEEEEEECSSCTTEEEEE---EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEETTTEEEEEETT
T ss_pred CCEEEEEECCCCCCEEEEE---cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEeCCCEEEEEECC
Confidence 3477788866552333333 358999999987432 223347999999999999 55 899999999999999998
Q ss_pred CCCCCCcccccceeeecc---ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeE
Q psy4579 160 ATPKENRVIDAKTIFTGH---TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVED 236 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~h---~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (368)
+. ....+..| ...+. +++|+|+ +.+|++|+.||.|++||++. .++..+.+|...|.+
T Consensus 150 ~~--------~~~~~~~~~~~~~~v~---~~~~~~~-~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 150 GS--------VIQVFAKTDSWDYWYC---CVDVSVS-RQMLATGDSTGRLLLLGLDG--------HEIFKEKLHKAKVTH 209 (383)
T ss_dssp SC--------EEEEEECCCCSSCCEE---EEEEETT-TTEEEEEETTSEEEEEETTS--------CEEEEEECSSSCEEE
T ss_pred CC--------ceEEEeccCCCCCCeE---EEEECCC-CCEEEEECCCCCEEEEECCC--------CEEEEeccCCCcEEE
Confidence 53 33444444 46775 9999998 89999999999999999953 356778899999999
Q ss_pred EEEeee---cccccCCCCccceEEEE--------------------eecCC-cccccccccccCCCCCcccccCCCCcee
Q psy4579 237 YSIHRL---ILGTHTSDEQNHLLIAS--------------------VQLPN-EDAQFDASNYDTDKGDFGGFGSVSGKIE 292 (368)
Q Consensus 237 v~~~~~---~~~~~~~d~~~~~~~~~--------------------~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 292 (368)
++|++. ++.+++.|+.+++|... +.+.+ ++..+.... ..+.+.+|+..+++..
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~---~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD---QRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE---SSSEEEEEETTBTTSC
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc---CCCcEEEEECCCCccc
Confidence 999873 78888888888777432 22333 222222222 2356778888777665
Q ss_pred eeeecCc-------c----------cceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec--cc
Q psy4579 293 IEIKINH-------E----------GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQ 353 (368)
Q Consensus 293 ~~~~~~h-------~----------~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g--h~ 353 (368)
..+. +| . +.+..++|+|++. + +|+.||.|++||++. ...+..+.+ |.
T Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~----------~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 287 DQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANS----------GGLVHQLRDPNAA 352 (383)
T ss_dssp SEEE-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTT----------CCEEEEECBTTBC
T ss_pred cccc-cccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCC----------CceeeeecCCCCC
Confidence 4443 23 2 3444566777773 3 788999999999975 344556666 56
Q ss_pred Cceeeecceeee
Q psy4579 354 KEGLIEGTYNCY 365 (368)
Q Consensus 354 ~~V~~l~w~p~~ 365 (368)
..+..++|+|+.
T Consensus 353 ~~~~~~~~s~~g 364 (383)
T 3ei3_B 353 GIISLNKFSPTG 364 (383)
T ss_dssp SCCCEEEECTTS
T ss_pred ceEEEEEEecCc
Confidence 777788999875
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=5.1e-24 Score=190.48 Aligned_cols=269 Identities=13% Similarity=0.131 Sum_probs=165.5
Q ss_pred cccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC--CCCcEEEEEEecCCCccccccCCcccCCCCcccCC
Q psy4579 37 HALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD--EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLP 114 (368)
Q Consensus 37 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 114 (368)
..+.-++.+++|+||+++|++|++++ +++|+ ...+..... ... +..+.+......+...+ +.+++|++|
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~d~~v~iW 86 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYN--VHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVT---GVKEVVHIW 86 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEE--ETTEEEEEEEECSC---CCEEEECTTSSEEEEEC---SSTTEEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEe--cCCcceeeeeecCC---eEEEEEcCCCCEEEEEE---CCccEEEEE
Confidence 34567899999999999999998886 44454 333322221 111 22233322222221111 347899999
Q ss_pred CCCeeeeeccccCCCCceeeEecCCC----------------C------------------CeeEE--EeCCCcEEEEeC
Q psy4579 115 NEDAQFDASNYDTDKGGYGLSWNPSL----------------N------------------GYLLS--ASDDHTICLWDI 158 (368)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~l~~sp~~----------------~------------------~~las--g~~dg~v~iwd~ 158 (368)
|...........|...|.+++|+++. . ..+|. |+.||.|++||+
T Consensus 87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEEC
T ss_pred ECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEEC
Confidence 98654444445577789999988752 0 12333 467777888887
Q ss_pred CCCCCC--------Cccccc-ceeeeccccceecceeeEEeCCCCCeEEEeeCCCc-EEEEECCCCCCCCccccceeeee
Q psy4579 159 NATPKE--------NRVIDA-KTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT-ICLWDINATPKENRVIDAKTIFT 228 (368)
Q Consensus 159 ~~~~~~--------~~~~~~-~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 228 (368)
.++... .....+ ...+.+|.+.|. +++|+|+ +.+|++|+.||+ |++||++++ .++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~---~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~-------~~~~~~~ 235 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK---MVRLNRK-SDMVATCSQDGTIIRVFKTEDG-------VLVREFR 235 (355)
T ss_dssp CC------------------CCEEECCCSSCEE---EEEECTT-SSEEEEEETTCSEEEEEETTTC-------CEEEEEE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceE---EEEECCC-CCEEEEEeCCCCEEEEEECCCC-------cEEEEEE
Confidence 754310 000112 678899999996 9999998 999999999998 999999987 4567777
Q ss_pred -c-ccccEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCccccee
Q psy4579 229 -G-HTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVN 304 (368)
Q Consensus 229 -~-~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 304 (368)
+ |...|++++|+| ..+++++.|+.+++|............+... +... .+...-.-....+...+.....
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW-INMK-----YFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT-EECC-----CCCCSSCSEEEECCCCTTCCCC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce-eecc-----ccccccceeEEEeccCCCCCce
Confidence 5 999999999986 5677888888888775432111000000000 0000 0000000011112222334457
Q ss_pred EEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 305 RARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 305 ~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.++|+|++ ..|++++.||.+++|++..
T Consensus 310 ~~a~~~d~-~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 310 KIAWISES-SLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEEEEE
T ss_pred EEEEeCCC-CEEEEEeCCCeEEEEEEEc
Confidence 79999999 6788999999999999874
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.4e-25 Score=194.34 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=150.7
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee-
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF- 120 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~- 120 (368)
..+...+.+++..+++|+.||.+++|+. ..+....... ...+..+.+.+. + ...+.|++|++|+.++..
T Consensus 38 ~~~~~~~~~d~~~l~sg~~Dg~v~iwd~--~~~~~~~~~~-~~~v~~~~~~~~---~----~s~s~D~~i~~w~~~~~~~ 107 (343)
T 3lrv_A 38 KELNKSMYYDKWVCMCRCEDGALHFTQL--KDSKTITTIT-TPNPRTGGEHPA---I----ISRGPCNRLLLLYPGNQIT 107 (343)
T ss_dssp EEECSSSSEEEEEEEEEEETTEEEEEEE--SSSSCEEEEE-EECCCTTCCCCS---E----EEECSTTEEEEEETTTEEE
T ss_pred hhhhhhhcCCCCEEEEECCCCcEEEEEC--CCCcEEEEEe-cCCceeeeeCCc---e----EEecCCCeEEEEEccCceE
Confidence 3455567789999999999999966654 3332211110 011111222111 1 122468999999766432
Q ss_pred ---------ee-ccccCCCCceeeEecC--CCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceee
Q psy4579 121 ---------DA-SNYDTDKGGYGLSWNP--SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGL 187 (368)
Q Consensus 121 ---------~~-~~~~h~~~v~~l~~sp--~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i 187 (368)
.. ...+|.+.|.+++|+| ++ ++|++|+.||+|++||++++. ...... .|...+. ++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~---~~ 176 (343)
T 3lrv_A 108 ILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYS---SG 176 (343)
T ss_dssp EEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCC---EE
T ss_pred EeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceE---EE
Confidence 11 2235778999999999 88 899999999999999998764 233333 3455675 99
Q ss_pred EEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeec-ccccEeEEEEee--ecccccCCCCccceEEEEeecCC
Q psy4579 188 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVEDYSIHR--LILGTHTSDEQNHLLIASVQLPN 264 (368)
Q Consensus 188 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~ 264 (368)
+|+|+ +.+|++|+.||.|++||++++.. ....+.+ |...|.+++|+| ..+++++. +.+++|
T Consensus 177 ~~~pd-g~~lasg~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iw-------- 240 (343)
T 3lrv_A 177 VLHKD-SLLLALYSPDGILDVYNLSSPDQ------ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCF-------- 240 (343)
T ss_dssp EECTT-SCEEEEECTTSCEEEEESSCTTS------CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEE--------
T ss_pred EECCC-CCEEEEEcCCCEEEEEECCCCCC------CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEE--------
Confidence 99998 99999999999999999998742 1156676 999999999986 23333332 233333
Q ss_pred cccccccccccCCCCCcccccCCCCceeeeee--cCcccce--eEEEEeCCCCcEEEEecC-CCeEEEEECCC
Q psy4579 265 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK--INHEGEV--NRARYMPQNPCVIATKTP-SSDVLVFDYTK 332 (368)
Q Consensus 265 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~h~~~i--~~~~~~p~~~~~lasgs~-Dg~i~iwd~~~ 332 (368)
|+++++....+. ..|...+ .+++|+|++ .+|++++. |+.|++|++..
T Consensus 241 --------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 241 --------------------DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp --------------------ETTSSTTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECT
T ss_pred --------------------EcCCCCcceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcc
Confidence 222222221111 0233344 469999999 57778777 99999999964
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.6e-24 Score=206.81 Aligned_cols=229 Identities=14% Similarity=0.155 Sum_probs=170.7
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCC---eeeeeccccCCCCceeeEecCC--CCCeeEEEeCCCcEEEEeC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED---AQFDASNYDTDKGGYGLSWNPS--LNGYLLSASDDHTICLWDI 158 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~---~~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~ 158 (368)
..|.++.+.+.+..+.++ +.||.|++|+.. ......+.+|.+.|++++|+|+ + ++|++|+.||.|++||+
T Consensus 10 ~~V~~l~~s~dg~~latg----~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATC----SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKE 84 (753)
T ss_dssp CCEEEECCCSSSCCEEEE----ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEE
T ss_pred ceeEEEEECCCCCeEEEE----ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEEC
Confidence 347778886655444333 358999999975 3456677889999999999988 7 89999999999999999
Q ss_pred CCCCCCCcccccceeeeccccceecceeeEEeCCC-CCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEE
Q psy4579 159 NATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL-NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
.++.. .....+.+|...|. +++|+|+. +.++++|+.||.|++||+++... .....+.+|...|.++
T Consensus 85 ~~~~~-----~~~~~~~~h~~~V~---~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 85 ENGRW-----SQIAVHAVHSASVN---SVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSA 151 (753)
T ss_dssp ETTEE-----EEEEEECCCSSCEE---EEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEEE
T ss_pred CCCcc-----cccccccCCCCCeE---EEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEEE
Confidence 87631 14567788999996 99999974 67999999999999999988643 2234567899999999
Q ss_pred EEeee---------------cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCC----ceeeeeecC
Q psy4579 238 SIHRL---------------ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG----KIEIEIKIN 298 (368)
Q Consensus 238 ~~~~~---------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~ 298 (368)
+|+|. .+.+++.|+.+++ |+..++ .....+ .+
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~i----------------------------wd~~~~~~~~~~~~~~-~~ 202 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKI----------------------------WKYNSDAQTYVLESTL-EG 202 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEE----------------------------EEEETTTTEEEEEEEE-CC
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEE----------------------------EeccCCcccceeeeee-cC
Confidence 99873 3334444444443 333333 222333 38
Q ss_pred cccceeEEEEeCC---CCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 299 HEGEVNRARYMPQ---NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 299 h~~~i~~~~~~p~---~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|...|.+++|+|+ + .+|++|+.||.|++||++..... .........+|.+.|++++|+|+.
T Consensus 203 h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~l~~spdg 266 (753)
T 3jro_A 203 HSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGP-----WKKTLLKEEKFPDVLWRASWSLSG 266 (753)
T ss_dssp CSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSC-----CBCCBSSSSCCSSCCCCEEECTTT
T ss_pred CCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCc-----ceeEEeccCCCCCceEEEEEcCCC
Confidence 9999999999999 6 78999999999999999863210 011233445799999999999874
No 112
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=8.5e-24 Score=194.87 Aligned_cols=280 Identities=16% Similarity=0.208 Sum_probs=206.6
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 95 (368)
+...++|+..+..+...+.. +..++.+++|+ ++.+++|+.||.+.+|+.. .+..... ......|.++.+..
T Consensus 138 dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~-- 209 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVG--HTGGVWSSQMR--DNIIISGSTDRTLKVWNAE--TGECIHTLYGHTSTVRCMHLHE-- 209 (445)
T ss_dssp TSCEEEEETTTCCEEEECCC--CSSCEEEEEEE--TTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEET--
T ss_pred CCcEEEEECCCCcEEEEEcC--CCCCEEEEEec--CCEEEEEeCCCeEEEEECC--cCcEEEEECCCCCcEEEEEecC--
Confidence 45677888877766555543 45688999997 5689999999999776543 3332222 11122355666632
Q ss_pred cccccCCcccCCCCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
..+. ++ +.||.|++|+... +....+.+|...|.+++| ++ ..+++|+.||.|++||++++. +...+
T Consensus 210 ~~l~-s~---s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~-------~~~~~ 275 (445)
T 2ovr_B 210 KRVV-SG---SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETET-------CLHTL 275 (445)
T ss_dssp TEEE-EE---ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTE-------EEEEE
T ss_pred CEEE-EE---eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCc-------EeEEe
Confidence 1222 22 4689999999864 556667789999999999 55 899999999999999998763 56788
Q ss_pred eccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccc
Q psy4579 175 TGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNH 254 (368)
Q Consensus 175 ~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~ 254 (368)
.+|...+. +++| + +.++++|+.||.|++||++++ .++..+.+|...+.++.+++..+.+++.|+.++
T Consensus 276 ~~~~~~v~---~~~~--~-~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 276 QGHTNRVY---SLQF--D-GIHVVSGSLDTSIRVWDVETG-------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp CCCSSCEE---EEEE--C-SSEEEEEETTSCEEEEETTTC-------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred cCCCCceE---EEEE--C-CCEEEEEeCCCeEEEEECCCC-------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 89999985 9998 4 889999999999999999887 456788889999999999988888888888888
Q ss_pred eEEEEe-----ecCC---ccccccccccc-------CCCCCcccccCCCCceeeeee----cCcccceeEEEEeCCCCcE
Q psy4579 255 LLIASV-----QLPN---EDAQFDASNYD-------TDKGDFGGFGSVSGKIEIEIK----INHEGEVNRARYMPQNPCV 315 (368)
Q Consensus 255 ~~~~~~-----~~~~---~~~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~~p~~~~~ 315 (368)
+|.... .+.. .........++ ...|.+.+|+..+++....+. .+|.+.|.+++|+|++ .+
T Consensus 343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 421 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LV 421 (445)
T ss_dssp EEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-EE
T ss_pred EEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-EE
Confidence 874311 1111 11111111111 234678889999988776662 2688899999999999 79
Q ss_pred EEEecCCCe----EEEEECCC
Q psy4579 316 IATKTPSSD----VLVFDYTK 332 (368)
Q Consensus 316 lasgs~Dg~----i~iwd~~~ 332 (368)
+|+|+.||+ |.+||++.
T Consensus 422 la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEcccCCCCccEEEEEECCC
Confidence 999999998 99999974
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=188.65 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=169.2
Q ss_pred EEEEEEecCC-CccccccCCcccCCCCcccCCCCCeeeeecc--------------ccCCCCceeeEecCCCCCeeEEEe
Q psy4579 84 LLIASVQLPN-EDAQFDASNYDTDKGGNVQLPNEDAQFDASN--------------YDTDKGGYGLSWNPSLNGYLLSAS 148 (368)
Q Consensus 84 ~~i~~~~~~~-~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~--------------~~h~~~v~~l~~sp~~~~~lasg~ 148 (368)
..|.++.+.+ .+..+..+ +.||.|++|+.+....... .+|...|.+++|+|++..+|++++
T Consensus 44 ~~v~~~~~s~~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSG----GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp SCEEEEEECTTTCCEEEEE----ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred CcEEEEEEecCCCCEEEEE----cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 4577888866 44333332 3589999999875332222 249999999999995448999999
Q ss_pred CCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCC--CCeEEEeeCCCcEEEEECCCCCCCCccccceee
Q psy4579 149 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL--NGYLLSASDDHTICLWDINATPKENRVIDAKTI 226 (368)
Q Consensus 149 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 226 (368)
.||.|++||+.++. ....+. +...+. ++.|+|.. +.++++++.||.|++||++++ ..+..
T Consensus 120 ~d~~i~iwd~~~~~-------~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-------~~~~~ 181 (408)
T 4a11_B 120 FDKTLKVWDTNTLQ-------TADVFN-FEETVY---SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-------SCSHI 181 (408)
T ss_dssp TTSEEEEEETTTTE-------EEEEEE-CSSCEE---EEEECSSCSSCCEEEEEESSSSEEEEESSSS-------CCCEE
T ss_pred CCCeEEEeeCCCCc-------cceecc-CCCcee---eeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-------ceeee
Confidence 99999999998763 334444 566664 89998852 349999999999999999886 34677
Q ss_pred eecccccEeEEEEeee---cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccce
Q psy4579 227 FTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEV 303 (368)
Q Consensus 227 ~~~~~~~v~~v~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i 303 (368)
+.+|...|.+++|+|. ++.+++.++.+++|..... .... ..++...+. ..........+|...|
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~----~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA----SGCL--ITLDQHNGK-------KSQAVESANTAHNGKV 248 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS----SCCS--EECCTTTTC-------SCCCTTTSSCSCSSCE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC----Cccc--ccccccccc-------cceeeccccccccCce
Confidence 8889999999999863 4667777776666543210 0000 000000000 0000111113799999
Q ss_pred eEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCC-------------------------------------CCCCCc
Q psy4579 304 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPN-------------------------------------GECHPD 346 (368)
Q Consensus 304 ~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~-------------------------------------~~~~~~ 346 (368)
.+++|+|++ .+|++++.||.|++||++......... ....++
T Consensus 249 ~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 249 NGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred eEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 999999999 678899999999999998644321110 122345
Q ss_pred eeeecccCceeeecceeee
Q psy4579 347 LRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 347 ~~~~gh~~~V~~l~w~p~~ 365 (368)
..+.+|.+.|++++|+|+.
T Consensus 328 ~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp EEECCCSSCEEEEEEETTT
T ss_pred eeeccCCCeEEEEEEcCCC
Confidence 5667899999999999975
No 114
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=1.4e-23 Score=207.48 Aligned_cols=220 Identities=17% Similarity=0.218 Sum_probs=174.2
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCC-eeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNED-AQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
.|.++.|.+....+.++. .+|.|++|+.. +.....+..|...|++++|+|++ ++|++|+.||.|++||+.++.
T Consensus 15 ~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~- 88 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE- 88 (814)
T ss_dssp CEEEEEECSSSSEEEEEE----TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC-
T ss_pred ceEEEEECCCCCEEEEEe----CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-
Confidence 377788866554444332 58999999975 45666777899999999999999 999999999999999998874
Q ss_pred CCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--
Q psy4579 164 ENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR-- 241 (368)
Q Consensus 164 ~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-- 241 (368)
....+.+|.+.|. +++|+|+ +.+|++++.||.|++||++++. .....+.+|...|.+++|+|
T Consensus 89 ------~~~~~~~~~~~v~---~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 89 ------KVVDFEAHPDYIR---SIAVHPT-KPYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp ------EEEEEECCSSCEE---EEEECSS-SSEEEEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTE
T ss_pred ------EEEEEecCCCCEE---EEEEeCC-CCEEEEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCC
Confidence 5678889999996 9999999 8999999999999999998752 34567788999999999986
Q ss_pred -ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC--CCCcEEEE
Q psy4579 242 -LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP--QNPCVIAT 318 (368)
Q Consensus 242 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p--~~~~~las 318 (368)
..+.+++.++.+.+| +..++.....+...|...|.+++|+| ++ .+|++
T Consensus 153 ~~~l~~~~~dg~v~vw----------------------------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~ 203 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVW----------------------------SLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT 203 (814)
T ss_dssp EEEEEEEETTSEEEEE----------------------------ETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEE
T ss_pred CCEEEEEeCCCeEEEE----------------------------ECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEE
Confidence 345555554444433 33334444455545668999999999 77 68889
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 319 KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 319 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|+.||.|++||++. ......+.+|...|.+++|+|+.
T Consensus 204 ~~~dg~i~~~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 204 ASDDLTIKIWDYQT----------KSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp ECTTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECSSS
T ss_pred EeCCCEEEEEECCC----------CcEEEEEcCCCCCEEEEEEcCCC
Confidence 99999999999975 34456778999999999999975
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=5.1e-24 Score=188.94 Aligned_cols=230 Identities=9% Similarity=-0.055 Sum_probs=164.4
Q ss_pred EEEEEEecCCCccccccCCcccCCCCcccCCCCCeee----eeccccCCCCceeeEecCCCCC-eeEEEeCCCcEEEEeC
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF----DASNYDTDKGGYGLSWNPSLNG-YLLSASDDHTICLWDI 158 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~h~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~ 158 (368)
..|.++.|.+....+.++ +.||.|++|+.+... ......|...|++++|+|++ . +|++|+.||.|++||+
T Consensus 12 ~~v~~~~~s~~~~~l~~~----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECS
T ss_pred CcEEEEEEcCCCCEEEEE----cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEe
Confidence 347777776544433332 358999999976533 55667899999999999998 8 9999999999999999
Q ss_pred -CCCCCCCcccccceeeec--cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCc--cccceeeeeccccc
Q psy4579 159 -NATPKENRVIDAKTIFTG--HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENR--VIDAKTIFTGHTAV 233 (368)
Q Consensus 159 -~~~~~~~~~~~~~~~~~~--h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~ 233 (368)
.++. ...+.+ |...|. +++|+| +.+|++++.|+.|++||+++...... ...++..+. |...
T Consensus 87 ~~~~~--------~~~~~~~~~~~~v~---~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 87 IGSPS--------FQALTNNEANLGIC---RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp SSSSS--------EEECBSCCCCSCEE---EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred ccCCc--------eEeccccCCCCceE---EEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 7653 367788 999996 999999 78999999999999999986100000 002233444 7888
Q ss_pred EeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCC-Cce-eeeeecCcccceeEEEEeC-
Q psy4579 234 VEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS-GKI-EIEIKINHEGEVNRARYMP- 310 (368)
Q Consensus 234 v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~-~~~~~~~h~~~i~~~~~~p- 310 (368)
|.+++|++..+.+++.++.+++| +... +.. .......|...|.+++|+|
T Consensus 153 v~~~~~~~~~l~~~~~d~~i~i~----------------------------d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 153 IFTMDTNSSRLIVGMNNSQVQWF----------------------------RLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp EEEEEECSSEEEEEESTTEEEEE----------------------------ESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred eEEEEecCCcEEEEeCCCeEEEE----------------------------ECCccccccceeeecCCCCceeEEEECCC
Confidence 99999987545555544444433 2222 221 1223336888999999999
Q ss_pred CCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC---------ceeeecceeee
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---------EGLIEGTYNCY 365 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~---------~V~~l~w~p~~ 365 (368)
++ .+|++|+.||.|++|+++.... .....+...+.+|.. .|.+++|+|+.
T Consensus 205 ~~-~~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 205 EQ-EGYACSSIDGRVAVEFFDDQGD----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp GG-CEEEEEETTSEEEEEECCTTCC----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred CC-CEEEEEecCCcEEEEEEcCCCc----ccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 88 6888999999999999975310 001244556777755 99999999864
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=191.43 Aligned_cols=238 Identities=19% Similarity=0.266 Sum_probs=161.1
Q ss_pred CCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCee------------eeeccccCC------------CCceee
Q psy4579 79 DEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ------------FDASNYDTD------------KGGYGL 134 (368)
Q Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~------------~~~~~~~h~------------~~v~~l 134 (368)
..+....|.++.|.+.+..+.++ +.||.|++|+.... ....+.+|. +.|+++
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATG----DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEE----ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred cccccCcEEEEEECCCCCEEEEE----cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 34555678899997655444333 35899999997643 355677898 889999
Q ss_pred EecCCCC-CeeEEEeCCCcEEEEeCCCCCCCCc------------------cc--------------cccee-eeccccc
Q psy4579 135 SWNPSLN-GYLLSASDDHTICLWDINATPKENR------------------VI--------------DAKTI-FTGHTAV 180 (368)
Q Consensus 135 ~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~------------------~~--------------~~~~~-~~~h~~~ 180 (368)
+|+|+++ ..|++++.||+|++||+.+...... .+ .+... ..+|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 9999863 5899999999999999976321000 00 00112 3679999
Q ss_pred eecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCcccc-ceeeeecccccEeEEEEee---ecccccCCCCccceE
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID-AKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLL 256 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~ 256 (368)
|. +++|+|+ +.+|++| .||.|++||++........+. ....+.+|...|.+++|+| .++++++.|+.+++|
T Consensus 180 v~---~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 180 IN---SISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CC---EEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred eE---EEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 96 9999998 8999998 799999999985321100000 0013567999999999986 356666666655554
Q ss_pred EEEeecCCcccccccccccCCCCCcccccCCCCce----eeeeecCcc------------cceeEEEEeCCCCcEEEEec
Q psy4579 257 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI----EIEIKINHE------------GEVNRARYMPQNPCVIATKT 320 (368)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~h~------------~~i~~~~~~p~~~~~lasgs 320 (368)
.. .+++. ...+. +|. ..|.+++|+|++ .+|++++
T Consensus 255 d~----------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~ 304 (447)
T 3dw8_B 255 DM----------------------------RASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRD 304 (447)
T ss_dssp ET----------------------------TTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTS-SEEEEEE
T ss_pred EC----------------------------cCCccccceeeEec-cCCCccccccccccCceEEEEEECCCC-CEEEEee
Confidence 32 22221 11222 343 499999999999 6777888
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCCCceeeecccCc---------------eeeecceeee
Q psy4579 321 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE---------------GLIEGTYNCY 365 (368)
Q Consensus 321 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~---------------V~~l~w~p~~ 365 (368)
. +.|++||++.. ..++..+.+|... ++.++|+|+.
T Consensus 305 ~-~~v~iwd~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 305 Y-LSVKVWDLNME---------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp S-SEEEEEETTCC---------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred C-CeEEEEeCCCC---------ccccceeeccccccccccccccccccccceEEEECCCC
Confidence 8 99999999741 2445567777642 2348999874
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=1.7e-22 Score=182.74 Aligned_cols=262 Identities=13% Similarity=0.113 Sum_probs=177.4
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccc-cCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCc
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSV-QLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNED 95 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 95 (368)
+...++|+..+..+...+..+ -.+.+++|+|+++++ ++++.++.+.+| +...+...........+..+.+.+.+
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~--d~~~~~~~~~~~~~~~v~~~~~spdg 85 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSII--DTATNNVIATVPAGSSPQGVAVSPDG 85 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEE--ETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CCEEEEEECCCCeEEEEeecC---CCcceEEECCCCCEEEEECCCCCeEEEE--ECCCCeEEEEEECCCCccceEECCCC
Confidence 345778888776655544433 347899999999987 567788888555 44444333221111256777776655
Q ss_pred cccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCee-EEEeCCCcEEEEeCCCCCCCCcccccceee
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
..+..++ ..++.|.+|+...........+...+.+++|+|++ +.| ++++.|+.|++||+.+++ ....+
T Consensus 86 ~~l~~~~---~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~-------~~~~~ 154 (391)
T 1l0q_A 86 KQVYVTN---MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG-KKLYVTNNGDKTVSVINTVTKA-------VINTV 154 (391)
T ss_dssp SEEEEEE---TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTE-------EEEEE
T ss_pred CEEEEEE---CCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCc-------EEEEE
Confidence 5444333 34789999998865555555566789999999998 655 788899999999998763 34556
Q ss_pred eccccceecceeeEEeCCCCCeE-EEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCcc
Q psy4579 175 TGHTAVVEVRYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQN 253 (368)
Q Consensus 175 ~~h~~~v~~~~~i~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~ 253 (368)
..|... . +++|+|+ +..+ ++++.|+.|++||++++. ....+. +...+.+++|++. ..
T Consensus 155 ~~~~~~-~---~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~~---------g~ 212 (391)
T 1l0q_A 155 SVGRSP-K---GIAVTPD-GTKVYVANFDSMSISVIDTVTNS-------VIDTVK-VEAAPSGIAVNPE---------GT 212 (391)
T ss_dssp ECCSSE-E---EEEECTT-SSEEEEEETTTTEEEEEETTTTE-------EEEEEE-CSSEEEEEEECTT---------SS
T ss_pred ecCCCc-c---eEEECCC-CCEEEEEeCCCCEEEEEECCCCe-------EEEEEe-cCCCccceEECCC---------CC
Confidence 655544 3 9999998 6655 788899999999998862 233333 4556778888751 11
Q ss_pred ceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 254 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+++.. .+...+.+.+|+..+++....+. .| ..+.+++|+|++..++++++.|+.|++||+..
T Consensus 213 ~l~~~~--------------~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 213 KAYVTN--------------VDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEE--------------ECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEe--------------cCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 222221 11123345556666666655554 34 35789999999977778989999999999975
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=1.2e-23 Score=190.67 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=154.9
Q ss_pred EecCCcccccCCCCccccccCcceeeecc--c-cCCCC-CcEEEEEEecCC-------CccccccCCcccCCCCcccCCC
Q psy4579 47 QWLPDVTSVQLPNEDAQFDASNYDTDKGT--H-TSDEQ-NHLLIASVQLPN-------EDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 47 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
.+.|++..|++++.|+++++|+.+...-. . ..... ....|.++.|.+ .+..+.+++ +.|++|++||
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~---s~D~tv~~Wd 172 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV---GDDCTLIIWR 172 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE---ETTSEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE---ECCCeEEEEE
Confidence 34456778999999999977765432111 1 11222 234577777743 133444444 4699999999
Q ss_pred CC-eeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcc------------------cccceeeec
Q psy4579 116 ED-AQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV------------------IDAKTIFTG 176 (368)
Q Consensus 116 ~~-~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~------------------~~~~~~~~~ 176 (368)
.. +........|...|.+++|+|++..+|++|+.||+|++||++++...... ........+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 75 45667788899999999999987568999999999999999876432110 001122356
Q ss_pred cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceE
Q psy4579 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLL 256 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~ 256 (368)
|...+. ++.|++.++..|++++.|+++++||+..... ...+..|...+..+.+.+........+.....
T Consensus 253 ~~~~v~---~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 321 (393)
T 4gq1_A 253 IASSLA---NVRWIGSDGSGILAMCKSGAWLRWNLFANND-------YNEISDSTMKLGPKNLLPNVQGISLFPSLLGA- 321 (393)
T ss_dssp CSSSCS---EEEEETTTTCEEEEECTTSEEEEEEC--------------------------CCSCSEEEECSSCCSSCC-
T ss_pred ccccce---eeeeecCCCCEEEEEeCCCCEEEEECccCCC-------CceEeeecCccccEEEccccccccccCcceeE-
Confidence 777775 8999743399999999999999999988632 34455566666666554421111111000000
Q ss_pred EEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 257 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
...+..+..+.+.. ...+.+.+|+..++....... +|..+|.+++|+|+| .+||+++.|| +.+|.+
T Consensus 322 ---~~~~~~~~~~~~sg--s~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG-~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 ---CPHPRYMDYFATAH--SQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ---EECSSCTTEEEEEE--TTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTS-SEEEEEESSE-EEEEEE
T ss_pred ---EEccCCCCEEEEEE--CCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEE
Confidence 00111122222211 234567778887787766665 788999999999999 6888987665 555555
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-21 Score=180.61 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=125.9
Q ss_pred cCCCCceeeEecCCCCCee-EEEeCCCcEEEEeCC--CCCCCCcccccceeee--ccccceecceeeEEeCCCCCeEEEe
Q psy4579 126 DTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDIN--ATPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLNGYLLSA 200 (368)
Q Consensus 126 ~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~~~l~s~ 200 (368)
+|.+.|++++|+|++ .+| ++|+.||.|++||+. ++. ....+. .|...+. +++|+|+ +.+|++|
T Consensus 100 ~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~---~~~~sp~-~~~l~~~ 167 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPN---AISIAED-DTTVIIA 167 (450)
T ss_dssp CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEE---EEEECTT-SSEEEEE
T ss_pred ccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCce---EEEEcCC-CCEEEEE
Confidence 567789999999999 775 999999999999998 543 345554 5567775 9999998 8999999
Q ss_pred eCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee-----cccccCCCCccceEEEEeecCCccccccccccc
Q psy4579 201 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL-----ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 275 (368)
Q Consensus 201 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d 275 (368)
+.||.|++||+.+..... .+...+.+|...|.+++|+|. .+.+++.|+.+++
T Consensus 168 ~~~g~v~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v-------------------- 224 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI-------------------- 224 (450)
T ss_dssp ETTSEEEEEETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE--------------------
T ss_pred eCCCcEEEEecCCccccc---ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE--------------------
Confidence 999999999998764321 023467789999999999974 4555554444444
Q ss_pred CCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 276 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|+..++.....+..+|...|.+++|+ ++ .+|++|+.|++|++||++.
T Consensus 225 --------wd~~~~~~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 225 --------SHYPQCFIVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp --------EEESCTTCEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTT
T ss_pred --------EECCCCceeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCC
Confidence 33344555555445899999999999 87 6888999999999999975
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.87 E-value=3.1e-21 Score=172.40 Aligned_cols=205 Identities=11% Similarity=0.101 Sum_probs=138.4
Q ss_pred ccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeE-EEee
Q psy4579 123 SNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL-LSAS 201 (368)
Q Consensus 123 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l-~s~s 201 (368)
....|...|++++|+|+| .+||+|+.|| +++||+.... .....+...+. .+++.+. ++.+ ++|+
T Consensus 14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 78 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLS---KVRMLHR-TNYVAFVTG 78 (355)
T ss_dssp -----CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEE---------EEEEEECSCCC---EEEECTT-SSEEEEECS
T ss_pred ccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeE---EEEEcCC-CCEEEEEEC
Confidence 456799999999999999 8999998775 7899987642 12222222353 7888887 5555 6788
Q ss_pred CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecC-Ccccc------------
Q psy4579 202 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLP-NEDAQ------------ 268 (368)
Q Consensus 202 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~------------ 268 (368)
.|++|++||++++ .++..+. +...|.++.+++..+.... ++.+++|. .... .....
T Consensus 79 ~d~~v~iWd~~~~-------~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d--~~~~~~~~~~~~~~~~~~~~s~ 147 (355)
T 3vu4_A 79 VKEVVHIWDDVKK-------QDVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFK--FGNPWKRITDDIRFGGVCEFSN 147 (355)
T ss_dssp STTEEEEEETTTT-------EEEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEE--SSTTCCBSSCCEEEEEEEEEET
T ss_pred CccEEEEEECCCC-------cEEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEE--CCCCceeeEEeccCCceEEEEc
Confidence 8999999999887 3455555 6678999999864333322 33444443 2111 00000
Q ss_pred -cccccccCCCCCcccccCCCCc----------------eeeeeecCcccceeEEEEeCCCCcEEEEecCCCe-EEEEEC
Q psy4579 269 -FDASNYDTDKGDFGGFGSVSGK----------------IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSD-VLVFDY 330 (368)
Q Consensus 269 -~~~~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~-i~iwd~ 330 (368)
..+..-....|.+.+|+..++. ....+ .+|.+.|++++|+|++ .+||||+.||+ |++||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCC-CEEEEEeCCCCEEEEEEC
Confidence 0000002455778888887765 13334 4899999999999999 78999999998 999999
Q ss_pred CCCCCCCCCCCCCCCceeee-c-ccCceeeecceeee
Q psy4579 331 TKHPSKPDPNGECHPDLRLR-G-HQKEGLIEGTYNCY 365 (368)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-g-h~~~V~~l~w~p~~ 365 (368)
+. ...+..+. | |.+.|++++|+|+.
T Consensus 226 ~~----------~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 226 ED----------GVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp TT----------CCEEEEEECTTCCSCEEEEEECTTS
T ss_pred CC----------CcEEEEEEcCCCCCcEEEEEECCCC
Confidence 75 44556676 6 99999999999964
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.4e-22 Score=177.76 Aligned_cols=254 Identities=9% Similarity=0.007 Sum_probs=162.3
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeee-------ccccCC--CCCcEEEE
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDK-------GTHTSD--EQNHLLIA 87 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~i~ 87 (368)
+...++|+.........+. .-++.++.|+|+ +++++.|+.+++|..+... +..... ......|.
T Consensus 57 Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 129 (343)
T 3lrv_A 57 DGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII 129 (343)
T ss_dssp TTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE
T ss_pred CCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE
Confidence 4567788877766555444 346788999998 8999999999887544221 110000 11112467
Q ss_pred EEecCC--CccccccCCcccCCCCcccCCCCCeeeeec-c-ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC
Q psy4579 88 SVQLPN--EDAQFDASNYDTDKGGNVQLPNEDAQFDAS-N-YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK 163 (368)
Q Consensus 88 ~~~~~~--~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 163 (368)
++.+.+ .+..+... +.||.|++|+........ . ..|...|++++|+|++ .+||+|+.||.|++||++++..
T Consensus 130 ~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWA----DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp EEECCC---CCEEEEE----ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS
T ss_pred EEEcCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC
Confidence 777755 43333322 368999999987543332 2 3566789999999999 9999999999999999998752
Q ss_pred CCcccccceeeec-cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEe--EEEEe
Q psy4579 164 ENRVIDAKTIFTG-HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE--DYSIH 240 (368)
Q Consensus 164 ~~~~~~~~~~~~~-h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~--~v~~~ 240 (368)
....+.+ |.++|. +++|+|+ +.+|++++ |+.|++||+++..... .+..+..|...+. +++|+
T Consensus 205 ------~~~~~~~~h~~~v~---~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 205 ------ASSRFPVDEEAKIK---EVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTL----AYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp ------CCEECCCCTTSCEE---EEEECTT-SSEEEEEE-SSBEEEEETTSSTTCB----SSCCCBC-----CCEEEEEC
T ss_pred ------CccEEeccCCCCEE---EEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcce----eecccccccccccceEEEEC
Confidence 2256777 999996 9999998 89999999 5599999999874321 1122222434444 58887
Q ss_pred e--ecccccCC-CCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC---CCCc
Q psy4579 241 R--LILGTHTS-DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP---QNPC 314 (368)
Q Consensus 241 ~--~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p---~~~~ 314 (368)
+ ..+++++. ++.+++|... .+...... .++..++|.| +. .
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~----------------------------~~~~~~~~-----~~~~~~~~~~~~~~~-~ 315 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFD----------------------------KKTKNWTK-----DEESALCLQSDTADF-T 315 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEEC----------------------------TTTCSEEE-----EEEEECCC----CCC-C
T ss_pred CCCCEEEEecCCCCcEEEEEEc----------------------------ccccceEe-----cCceeEecCcccccc-c
Confidence 5 33444333 4444444321 11111111 4567778887 66 4
Q ss_pred EEEEecCCCeEEEEECC
Q psy4579 315 VIATKTPSSDVLVFDYT 331 (368)
Q Consensus 315 ~lasgs~Dg~i~iwd~~ 331 (368)
.+++++.||.+.++-..
T Consensus 316 ~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEEEEETTEEEEEEEC
T ss_pred eeEEEecCCceEEEEec
Confidence 66688889998887654
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=172.40 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=153.3
Q ss_pred EEEEEEecCCCc--cccccCCcccCCCCcccCCCCCe--eee-eccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeC
Q psy4579 84 LLIASVQLPNED--AQFDASNYDTDKGGNVQLPNEDA--QFD-ASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDI 158 (368)
Q Consensus 84 ~~i~~~~~~~~~--~~~~~~~~~~~~~g~i~i~~~~~--~~~-~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 158 (368)
..|.++.+.+.. ....+.+ +.||.|++|+.+. ... ..+.+|...|++++|+|++ ++|++|+.||.|++||+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~---~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAG---SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEE---ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEET
T ss_pred CceEEEEEcCCCCCceEEEEE---CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEc
Confidence 458888887653 2333333 3589999999863 333 5677899999999999998 99999999999999999
Q ss_pred CCCCCCCcccccceeeeccccceecceeeEE--eCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeE
Q psy4579 159 NATPKENRVIDAKTIFTGHTAVVEVRYGLSW--NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVED 236 (368)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~--~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (368)
+++. ...+.+|...|. +++| +|+ +.+|++++.||.|++||++++. ++..+..+. .+.+
T Consensus 116 ~~~~--------~~~~~~~~~~v~---~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~-~~~~ 175 (368)
T 3mmy_A 116 SSNQ--------AIQIAQHDAPVK---TIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSN-------PMMVLQLPE-RCYC 175 (368)
T ss_dssp TTTE--------EEEEEECSSCEE---EEEEEECSS-CEEEEEEETTSEEEEECSSCSS-------CSEEEECSS-CEEE
T ss_pred CCCC--------ceeeccccCceE---EEEEEeCCC-CCEEEEccCCCcEEEEECCCCc-------EEEEEecCC-CceE
Confidence 8763 344677999996 9999 787 8899999999999999998873 345565543 5666
Q ss_pred EEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceee-eeecCcccceeEEEEeCCCC--
Q psy4579 237 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI-EIKINHEGEVNRARYMPQNP-- 313 (368)
Q Consensus 237 v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~~p~~~-- 313 (368)
+.+....+..+..++...+|. ........ .....+...+.++.+.++..
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQ----------------------------LENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEE----------------------------CSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred EEecCCeeEEEeCCCcEEEEE----------------------------eccccchhhhccccccCCCceEEEcccCCCC
Confidence 666543333333333333322 22221111 11223445566666665542
Q ss_pred -cEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC------------ceeeecceeee
Q psy4579 314 -CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK------------EGLIEGTYNCY 365 (368)
Q Consensus 314 -~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~------------~V~~l~w~p~~ 365 (368)
..+++|+.||.|++||++.... ..+...+.+|.. .|.+++|+|+.
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNP-------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCH-------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred CCeEEEecCCCcEEEEecCCCCc-------cccceeeeeeecccccccccccccceEEEEEecCC
Confidence 2378999999999999975210 033446667766 79999999974
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=1.3e-20 Score=172.67 Aligned_cols=263 Identities=10% Similarity=0.092 Sum_probs=178.8
Q ss_pred ccCceeeEecCCcccccCCCCccccccCcceeeeccccCC------CCCcEEEEEEecCCCccccccCCcccCCCCcccC
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD------EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQL 113 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i 113 (368)
.-.+.+++|+|++..+++++.++.+.+|+ ...+..... ......+..+.+++.+..+.+ + ..+|.|++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d--~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~---~~d~~v~~ 195 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLD--INSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS-Q---MQANAVHV 195 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEE--TTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE-E---GGGTEEEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEE--CCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE-E---CCCCEEEE
Confidence 34466899999888888888898886554 443332221 122335777777554443332 2 35799999
Q ss_pred CCCCe-eeeeccccCCCCceeeEecCCCCCee-EEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeC
Q psy4579 114 PNEDA-QFDASNYDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191 (368)
Q Consensus 114 ~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p 191 (368)
|+.+. +....+..|...+.+++|+|++ ..+ ++++.|+.|++||+.++. ....+..+.. +. +++|+|
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~-~~---~~~~~~ 263 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKL-------EIRKTDKIGL-PR---GLLLSK 263 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTE-------EEEECCCCSE-EE---EEEECT
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCc-------EEEEecCCCC-ce---EEEEcC
Confidence 99875 4555566789999999999998 555 666689999999998763 3444554443 53 999999
Q ss_pred CCCCeEEEee--------CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEE---
Q psy4579 192 SLNGYLLSAS--------DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLI--- 257 (368)
Q Consensus 192 ~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~--- 257 (368)
+ +.++++++ .||.|++||++++. ....+ .|...+..++|++ .++.++..++.+.+|.
T Consensus 264 ~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 264 D-GKELYIAQFSASNQESGGGRLGIYSMDKEK-------LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp T-SSEEEEEEEESCTTCSCCEEEEEEETTTTE-------EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred C-CCEEEEEECCCCccccCCCeEEEEECCCCc-------EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 8 88888887 58999999998762 22322 4556788899975 3556656666666652
Q ss_pred -------------EEeecCCcccccccccccCC------------CCCcccccCCCCceeeeeecCcccceeEEEEeCCC
Q psy4579 258 -------------ASVQLPNEDAQFDASNYDTD------------KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQN 312 (368)
Q Consensus 258 -------------~~~~~~~~~~~~~~~~~d~~------------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 312 (368)
..+.+.+++..+.+...+.. .|.+.+|+..+++....+. +...+.+++|+|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg 412 (433)
T 3bws_A 335 KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDN 412 (433)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTS
T ss_pred CcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCC
Confidence 12233344333333322211 3578889988888776665 35679999999999
Q ss_pred CcEEEEecCCCeEEEEECC
Q psy4579 313 PCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 313 ~~~lasgs~Dg~i~iwd~~ 331 (368)
..++++++.|+.|++|++.
T Consensus 413 ~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEETTTTEEEEEEET
T ss_pred CEEEEEECCCCeEEEEEec
Confidence 6555555569999999986
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.84 E-value=3.7e-20 Score=167.36 Aligned_cols=249 Identities=9% Similarity=0.054 Sum_probs=160.4
Q ss_pred ccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeeccccCCCCce
Q psy4579 53 TSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGY 132 (368)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~ 132 (368)
..+++++.++.+.+|+. ..+........+..+.++.+.+.+..+.+++ ..++.|++|+...........+...+.
T Consensus 3 ~l~vs~~~d~~v~v~d~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDV--TSNKVTATIPVGSNPMGAVISPDGTKVYVAN---AHSNDVSIIDTATNNVIATVPAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEET--TTTEEEEEEECSSSEEEEEECTTSSEEEEEE---GGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred EEEEEcCCCCEEEEEEC--CCCeEEEEeecCCCcceEEECCCCCEEEEEC---CCCCeEEEEECCCCeEEEEEECCCCcc
Confidence 34667888888865544 4333322211112256777866655443332 247899999986544444444455999
Q ss_pred eeEecCCCCCee-EEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeE-EEeeCCCcEEEEE
Q psy4579 133 GLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL-LSASDDHTICLWD 210 (368)
Q Consensus 133 ~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l-~s~s~dg~i~iwd 210 (368)
+++|+|++ +.| ++++.|+.|++||+.+++ ....+..|. .+. +++|+|+ +..+ ++++.|+.|++||
T Consensus 78 ~~~~spdg-~~l~~~~~~~~~v~v~d~~~~~-------~~~~~~~~~-~~~---~~~~s~d-g~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 78 GVAVSPDG-KQVYVTNMASSTLSVIDTTSNT-------VAGTVKTGK-SPL---GLALSPD-GKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEECTTS-SEEEEEETTTTEEEEEETTTTE-------EEEEEECSS-SEE---EEEECTT-SSEEEEEETTTTEEEEEE
T ss_pred ceEECCCC-CEEEEEECCCCEEEEEECCCCe-------EEEEEeCCC-Ccc---eEEECCC-CCEEEEEeCCCCEEEEEE
Confidence 99999999 655 566678999999998764 345555554 443 9999999 6655 7889999999999
Q ss_pred CCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCc
Q psy4579 211 INATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 290 (368)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 290 (368)
++++ .....+..+ ..+.+++|++. ...+++.. ...+.+.+|+..+++
T Consensus 145 ~~~~-------~~~~~~~~~-~~~~~~~~~~d---------g~~l~~~~----------------~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 145 TVTK-------AVINTVSVG-RSPKGIAVTPD---------GTKVYVAN----------------FDSMSISVIDTVTNS 191 (391)
T ss_dssp TTTT-------EEEEEEECC-SSEEEEEECTT---------SSEEEEEE----------------TTTTEEEEEETTTTE
T ss_pred CCCC-------cEEEEEecC-CCcceEEECCC---------CCEEEEEe----------------CCCCEEEEEECCCCe
Confidence 9876 334455544 44577888751 01111111 112334455555565
Q ss_pred eeeeeecCcccceeEEEEeCCCCcEEEEec--CCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 291 IEIEIKINHEGEVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 291 ~~~~~~~~h~~~i~~~~~~p~~~~~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
....+ .+...+.+++|+|++..+++++. .|+.|++||++. ..++..+..|. .+.+++|+|..
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~s~dg 255 (391)
T 1l0q_A 192 VIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT----------NKITARIPVGP-DPAGIAVTPDG 255 (391)
T ss_dssp EEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT----------TEEEEEEECCS-SEEEEEECTTS
T ss_pred EEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC----------CeEEEEEecCC-CccEEEEccCC
Confidence 55444 36678999999999955554433 799999999975 23344555554 47889999864
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=2e-20 Score=171.36 Aligned_cols=209 Identities=11% Similarity=0.008 Sum_probs=147.8
Q ss_pred CCCCcccCCCCCe-eeee-----ccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccc
Q psy4579 106 DKGGNVQLPNEDA-QFDA-----SNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA 179 (368)
Q Consensus 106 ~~~g~i~i~~~~~-~~~~-----~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 179 (368)
..++.|.+|+... +... ...+|...|.+++|+|++ .++++++.|+.|++||++++. ....+..|..
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~-------~~~~~~~~~~ 212 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLA-------YKATVDLTGK 212 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCC-------EEEEEECSSS
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCce-------EEEEEcCCCC
Confidence 3578899999874 3333 345789999999999998 899999999999999998764 4567778888
Q ss_pred ceecceeeEEeCCCCCeE-EEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEE
Q psy4579 180 VVEVRYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIA 258 (368)
Q Consensus 180 ~v~~~~~i~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~ 258 (368)
.+. +++|+|+ +..+ ++++.|+.|++||++++ .....+..+ ..+.+++|++. ...++..
T Consensus 213 ~~~---~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~~-~~~~~~~~~~~---------g~~l~~~ 271 (433)
T 3bws_A 213 WSK---ILLYDPI-RDLVYCSNWISEDISVIDRKTK-------LEIRKTDKI-GLPRGLLLSKD---------GKELYIA 271 (433)
T ss_dssp SEE---EEEEETT-TTEEEEEETTTTEEEEEETTTT-------EEEEECCCC-SEEEEEEECTT---------SSEEEEE
T ss_pred Cee---EEEEcCC-CCEEEEEecCCCcEEEEECCCC-------cEEEEecCC-CCceEEEEcCC---------CCEEEEE
Confidence 885 9999998 6655 56668999999999876 234444433 45788888751 1122222
Q ss_pred EeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCC
Q psy4579 259 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD 338 (368)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~ 338 (368)
...... . ....+.+.+|+..+++..... .|...+.+++|+|+++.++++++.|+.|++||++.
T Consensus 272 ~~~~~~----~-----~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~------ 334 (433)
T 3bws_A 272 QFSASN----Q-----ESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE------ 334 (433)
T ss_dssp EEESCT----T-----CSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT------
T ss_pred ECCCCc----c-----ccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC------
Confidence 211000 0 012334556666666654443 56778999999999977888999999999999974
Q ss_pred CCCCCCCceeeecccCceeeecceeee
Q psy4579 339 PNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 339 ~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
...+..+ .|...+.+++|+|..
T Consensus 335 ----~~~~~~~-~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 335 ----KKVQKSI-PVFDKPNTIALSPDG 356 (433)
T ss_dssp ----TEEEEEE-ECSSSEEEEEECTTS
T ss_pred ----CcEEEEe-cCCCCCCeEEEcCCC
Confidence 2222233 477889999999864
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.84 E-value=1.7e-19 Score=164.47 Aligned_cols=221 Identities=6% Similarity=0.044 Sum_probs=157.9
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCC---cEEEEeCCCCCCCCcccccceeeeccccceecce
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 185 (368)
+.|++|+.++.....+.+|...|.+++|+|+| +.||+++.|+ .|++||+.+++ ...+..|...+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~--- 226 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNG--- 226 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEE---
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCccc---
Confidence 78999999887777788899999999999999 8999999875 99999998764 245667777775
Q ss_pred eeEEeCCCCCeEE-EeeCCCc--EEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEEE
Q psy4579 186 GLSWNPSLNGYLL-SASDDHT--ICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIAS 259 (368)
Q Consensus 186 ~i~~~p~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~~ 259 (368)
+++|+|+ +..|+ +++.|+. |.+||++++. ...+..|...+.+++|+| .++.+...++...++++.
T Consensus 227 ~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 227 APAFSPD-GSKLAFALSKTGSLNLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp EEEECTT-SSEEEEEECTTSSCEEEEEETTTCC--------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CEEEcCC-CCEEEEEEecCCCceEEEEECCCCC--------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 9999999 77666 7777765 9999998763 345666888899999985 233333334444555443
Q ss_pred e------------------ecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecC
Q psy4579 260 V------------------QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP 321 (368)
Q Consensus 260 ~------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~ 321 (368)
. .+.+++..+.....+.....+..|+..+++.. .+. .|. .+.+++|+|++ ..|++++.
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg-~~l~~~s~ 373 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNG-TMVIYSSS 373 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTS-SEEEEEEE
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCC-CEEEEEEc
Confidence 2 22222222222222222235667777776653 232 343 89999999999 45556666
Q ss_pred CC---eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 322 SS---DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 322 Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
|+ .|++||+.. .....+.+|.+.|.+++|+|-.
T Consensus 374 ~~~~~~l~~~d~~g-----------~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 374 QGMGSVLNLVSTDG-----------RFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ETTEEEEEEEETTS-----------CCEEECCCSSSEEEEEEECCCC
T ss_pred CCCccEEEEEECCC-----------CcEEEeeCCCCCCcCCcccccc
Confidence 66 799999863 3455788999999999999964
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=2.6e-19 Score=154.78 Aligned_cols=172 Identities=9% Similarity=-0.015 Sum_probs=110.7
Q ss_pred CCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeC--CCCCeEEEeeCCCcEEEEECCCCCCCCccccceee
Q psy4579 149 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP--SLNGYLLSASDDHTICLWDINATPKENRVIDAKTI 226 (368)
Q Consensus 149 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 226 (368)
.|+.|++|++..... ....+.+|...++ .++|+| +++.+|+||+.|++|+|||++++ +++++
T Consensus 155 ~d~~V~~~~~s~dG~------~~~s~~~~~~~v~---~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-------k~l~t 218 (356)
T 2w18_A 155 SDQQVEVMTFAEDGG------GKENQFLMPPEET---ILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-------QLLKK 218 (356)
T ss_dssp TTCEEEEEEECTTSC------EEEEEEECCCSSC---EEEEEEEETSTTEEEEEETTSEEEEEETTTC-------CEEEE
T ss_pred CCCcEEEEEECCCCc------eeeeeccCCCcee---eEEeeccCCCCceEEEecCCCcEEEEECCCC-------cEEEE
Confidence 499999999954321 4566778998886 888888 23799999999999999999998 45677
Q ss_pred eeccc---ccEeEEEEeee--cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeee----ec
Q psy4579 227 FTGHT---AVVEDYSIHRL--ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI----KI 297 (368)
Q Consensus 227 ~~~~~---~~v~~v~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~ 297 (368)
+.+|. ..+.+++|+|. .+.+.+.+.. +|... --...+.+.+|+..+++....+ ..
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~la--------------SGs~D~tIklWd~~tgk~l~v~~~~~p~ 282 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KESES--------------LRSPVFQLIVINPKTTLSVGVMLYCLPP 282 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC----------------------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCC--cceee--------------ccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence 77643 35667788871 1111111000 01000 0011223445555556554332 23
Q ss_pred CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCcee-eecceeee
Q psy4579 298 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGL-IEGTYNCY 365 (368)
Q Consensus 298 ~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~l~w~p~~ 365 (368)
+|...+.+..++ + .++|+|+.|++|+|||+.. ...+..+.+|.+.+. +++|+|+.
T Consensus 283 Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~t----------Gk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 283 GQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLL----------GQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp TCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTT----------CSEEEEECCC--CCCCEEEECSSS
T ss_pred CCcceeEccccC--C-CEEEEEcCCCcEEEEECCC----------CcEEEEecCCCCCeEEEEEECCCC
Confidence 676665555554 5 6899999999999999975 455667889998777 48999974
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=5.5e-18 Score=155.20 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=112.2
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeecc-ccCCCC-------------CcEEEEEEecCCCccccccCCcccCC
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGT-HTSDEQ-------------NHLLIASVQLPNEDAQFDASNYDTDK 107 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~ 107 (368)
.+..++++|++..+++++.++ +.++........ ...... ....+.++.|.+.+..+.+.....+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 367799999999999988887 544321110000 000000 01137788886665544421001246
Q ss_pred CCcccCCCCCee------------eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee
Q psy4579 108 GGNVQLPNEDAQ------------FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 108 ~g~i~i~~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
||.|++|+.... ....+.+|...|++++|+|++..+||+++.||+|++||++++. ......
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-------~~~~~~ 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-------KVCATL 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-------EEEEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-------ceeecc
Confidence 899999987532 1344566999999999999844899999999999999998763 234556
Q ss_pred ccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECC
Q psy4579 176 GHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
+|...+. +++|+|+ +.+|++|+.||+|++||++
T Consensus 190 ~~~~~v~---~v~wspd-g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 190 PSTVAVT---SVCWSPK-GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp CGGGCEE---EEEECTT-SSCEEEEETTSCEEEECTT
T ss_pred CCCCcee---EEEEcCC-CCEEEEEcCCCcEEEEccC
Confidence 7888886 9999999 9999999999999999987
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=5e-18 Score=155.45 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=135.5
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCC-------Cc--ccccceeeecccc
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE-------NR--VIDAKTIFTGHTA 179 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-------~~--~~~~~~~~~~h~~ 179 (368)
+.+++|+.... .....++.+++++++ .++++++.|+ +++|+....... .. ....... ..+..
T Consensus 23 ~~vri~~~~~~------~~~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE------LPKERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKF 93 (434)
T ss_dssp CEEECSCCCSS------CCCSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSS
T ss_pred eeEEecCCccc------cCCCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCC
Confidence 45777765321 123468999999998 8999999888 899876422110 00 0001111 23456
Q ss_pred ceecceeeEEeCCCCCeEE----EeeCCCcEEEEECCCCC----CCCccccceeeeecccccEeEEEEeee---cccccC
Q psy4579 180 VVEVRYGLSWNPSLNGYLL----SASDDHTICLWDINATP----KENRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHT 248 (368)
Q Consensus 180 ~v~~~~~i~~~p~~~~~l~----s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~ 248 (368)
.|. +++|+|+ +++|+ +|+.|+.|+|||+++.. ...+.+.....+.+|...|.+++|+|. ++++++
T Consensus 94 ~v~---~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 94 PIH---HLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CEE---EEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred ccc---EEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 675 9999999 88888 89999999999986541 110111224566779999999999863 455666
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF 328 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iw 328 (368)
.|+.+++|. ..++....... +|...|.+++|+|++ .+|++|+.||+|++|
T Consensus 170 ~Dg~v~iwD----------------------------~~~~~~~~~~~-~~~~~v~~v~wspdg-~~lasgs~dg~v~iw 219 (434)
T 2oit_A 170 ADGSIAVLQ----------------------------VTETVKVCATL-PSTVAVTSVCWSPKG-KQLAVGKQNGTVVQY 219 (434)
T ss_dssp TTSCEEEEE----------------------------ESSSEEEEEEE-CGGGCEEEEEECTTS-SCEEEEETTSCEEEE
T ss_pred CCCeEEEEE----------------------------cCCCcceeecc-CCCCceeEEEEcCCC-CEEEEEcCCCcEEEE
Confidence 555555543 33343333333 789999999999999 678899999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeee-------cccCceeeecceeee
Q psy4579 329 DYTKHPSKPDPNGECHPDLRLR-------GHQKEGLIEGTYNCY 365 (368)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~l~w~p~~ 365 (368)
|++. .....+. .|...|.+++|+|++
T Consensus 220 d~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 220 LPTL-----------QEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp CTTC-----------CEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred ccCC-----------cccccccCCcccCCCCceeEEEEEEecCc
Confidence 9972 1111121 345589999999865
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=4.7e-18 Score=166.38 Aligned_cols=265 Identities=12% Similarity=0.095 Sum_probs=168.3
Q ss_pred ccCceeeEecCCcccccCCCC-cc-----ccccCcceeeeccccC--CCC-Cc----------------------EEEEE
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNE-DA-----QFDASNYDTDKGTHTS--DEQ-NH----------------------LLIAS 88 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~--~~~-~~----------------------~~i~~ 88 (368)
.-++.+++|+|||++|++++. ++ .+ +.|++..|.... ... .. ..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i--~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDL--WSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEE--EEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEE--EEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 346788999999999999887 76 55 555554443211 100 00 22455
Q ss_pred EecCCCccccccCCcccCCCCcccCCCCCee---eeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCC
Q psy4579 89 VQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ---FDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN 165 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~---~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 165 (368)
+.|.+++..+.... ++.|.+|+.++. ....+..|...+.+++|+|+| +.||.++ ++.|++||+.++..
T Consensus 114 ~~~SpDg~~l~~~~-----~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~-- 184 (741)
T 2ecf_A 114 YQWSPDAQRLLFPL-----GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQ-- 184 (741)
T ss_dssp CEECTTSSEEEEEE-----TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEE--
T ss_pred eEECCCCCEEEEEe-----CCcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCE--
Confidence 56655554443332 288999999876 667777888999999999999 8888887 56999999987531
Q ss_pred cccccceeeeccccc----------------eecceeeEEeCCCCCeEEEeeCCC-------------------------
Q psy4579 166 RVIDAKTIFTGHTAV----------------VEVRYGLSWNPSLNGYLLSASDDH------------------------- 204 (368)
Q Consensus 166 ~~~~~~~~~~~h~~~----------------v~~~~~i~~~p~~~~~l~s~s~dg------------------------- 204 (368)
......+... +. +++|+|+ +.+|++++.|+
T Consensus 185 -----~~~~~~~~~~~~~g~~~~v~~~~~~~~~---~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 185 -----MQLTADGSTTIGNGIAEFVADEEMDRHT---GYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp -----EECCCCCCSSEEESCCCHHHHHHSCCCC---SEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred -----EEeccCCccceeccccceeeeecccccc---ceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 1222222221 23 8999999 88888887766
Q ss_pred --------cEEEEECCC-CCCCCccccceeee--ecccccEeEEEEeeecccccCCCCccceEEEEeecCCccccccccc
Q psy4579 205 --------TICLWDINA-TPKENRVIDAKTIF--TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN 273 (368)
Q Consensus 205 --------~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
.|.+||+.+ +.. .... ..|...+..++| +. ...+.+.... ...
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-pD---------g~~l~~~~~~--~~~------- 309 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQT-------QWIDLGKEQDIYLARVNW-RD---------PQHLSFQRQS--RDQ------- 309 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCC-------EEECCCSCSSEEEEEEEE-EE---------TTEEEEEEEE--TTS-------
T ss_pred CCCCCCeeEEEEEECCCCCce-------EEecCCCCcceEEEEEEe-CC---------CCEEEEEEec--ccC-------
Confidence 788999877 531 1211 146677888888 72 0111111110 000
Q ss_pred ccCCCCCcccccCCCCceeeeeecCccc----ceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee
Q psy4579 274 YDTDKGDFGGFGSVSGKIEIEIKINHEG----EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL 349 (368)
Q Consensus 274 ~d~~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 349 (368)
....+..++..+++...... .|.. .+..++|+|+|. ++++++.||.++||.+... .. ...+
T Consensus 310 ---~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~---------~~-~~~l 374 (741)
T 2ecf_A 310 ---KKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK---------GK-AAAL 374 (741)
T ss_dssp ---SEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS---------SC-EEES
T ss_pred ---CeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC---------CC-eeee
Confidence 11123344444555444333 2332 456899999995 8888899999899887631 12 4566
Q ss_pred ecccCceeee-cceeee
Q psy4579 350 RGHQKEGLIE-GTYNCY 365 (368)
Q Consensus 350 ~gh~~~V~~l-~w~p~~ 365 (368)
.+|...|.++ .|+|+.
T Consensus 375 ~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 375 THGNWSVDELLAVDEKA 391 (741)
T ss_dssp CCSSSCEEEEEEEETTT
T ss_pred eecceEEEeEeEEeCCC
Confidence 7788888887 588864
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.74 E-value=2.1e-17 Score=146.11 Aligned_cols=299 Identities=12% Similarity=0.095 Sum_probs=162.0
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCc-cccccCcceeeecccc--CCCCCcEEEEEEecCC
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNED-AQFDASNYDTDKGTHT--SDEQNHLLIASVQLPN 93 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 93 (368)
+...++|+.+..-....+......-++.+++|+|++++|++++.+ +.+.+|..+...+... ........+..+.+.+
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH 93 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC
Confidence 445667766422111222223344567789999999988887665 7776555442222211 1100000234455554
Q ss_pred CccccccCCcccCCCCcccCCCC---CeeeeeccccCCCCceeeEecCCCCCeeEEEe-CCCcEEEEeCCC-CCCCCccc
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNE---DAQFDASNYDTDKGGYGLSWNPSLNGYLLSAS-DDHTICLWDINA-TPKENRVI 168 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~---~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~-~~~~~~~~ 168 (368)
.+..+.... ..++.|.+|+. ..............+.+++|+|++ +.+++++ .++.|++||+.+ +...
T Consensus 94 dg~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~---- 165 (343)
T 1ri6_A 94 QGQFVFVGS---YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLV---- 165 (343)
T ss_dssp TSSEEEEEE---TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEE----
T ss_pred CCCEEEEEe---cCCCeEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCcee----
Confidence 444343333 24788999998 333333344455679999999999 7666666 899999999986 3210
Q ss_pred ccce--eeecc-ccceecceeeEEeCCCCCeE-EEeeCCCcEEEEECCCCCCCCccccceeeeec-c--cccEeEEEEee
Q psy4579 169 DAKT--IFTGH-TAVVEVRYGLSWNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTG-H--TAVVEDYSIHR 241 (368)
Q Consensus 169 ~~~~--~~~~h-~~~v~~~~~i~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~--~~~v~~v~~~~ 241 (368)
... .+..+ ...+. +++|+|+ +.++ +++..++.|.+||+...............+.. + ...+..++|++
T Consensus 166 -~~~~~~~~~~~~~~~~---~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 166 -AQDPAEVTTVEGAGPR---HMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp -EEEEEEEECSTTCCEE---EEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred -eecccccccCCCCCcc---eEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 111 22222 23443 8999999 7655 55558999999999643211110111111111 1 22455677764
Q ss_pred ---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCC--CC--ceeeeeecCcccceeEEEEeCCCCc
Q psy4579 242 ---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV--SG--KIEIEIKINHEGEVNRARYMPQNPC 314 (368)
Q Consensus 242 ---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~--~~~~~~~~~h~~~i~~~~~~p~~~~ 314 (368)
.++.+...++. +.+|+.. .+ +....+. .+. .+.+++|+|++..
T Consensus 241 dg~~l~v~~~~~~~----------------------------i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~ 290 (343)
T 1ri6_A 241 DGRHLYACDRTASL----------------------------ITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKY 290 (343)
T ss_dssp TSSEEEEEETTTTE----------------------------EEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSE
T ss_pred CCCEEEEEecCCCE----------------------------EEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCE
Confidence 12222222222 2222222 11 1222222 233 3889999999966
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 315 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 315 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+++++..|+.|.+|++... .+....+..+.. .....+++|.|.-
T Consensus 291 l~~~~~~~~~v~v~~~d~~------~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIVGE------QGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEECTTTCEEEEEEEETT------TTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred EEEecCCCCeEEEEEEcCC------CceeeEcccccc-CCCCeeEEEEccc
Confidence 6666557899999977531 121222223322 2456788888765
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=2e-17 Score=161.40 Aligned_cols=252 Identities=10% Similarity=0.060 Sum_probs=145.6
Q ss_pred ccccccCceeeEecCCcccccCCCCccccccCcceeeeccccC--CCCCc--EEEEEEecCCCccccccCCcc-----cC
Q psy4579 36 THALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTS--DEQNH--LLIASVQLPNEDAQFDASNYD-----TD 106 (368)
Q Consensus 36 ~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~i~~~~~~~~~~~~~~~~~~-----~~ 106 (368)
...+.....+++|+|||+++++ +.||.+.+| +...|.... ..... ..+..+.|++++..+.....+ .+
T Consensus 12 ~~~~~~~~~~~~~spdg~~~~~-~~dg~i~~~--d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 12 SEDFKIHDPEAKWISDTEFIYR-EQKGTVRLW--NVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CTTTCCCCCCCCBSSSSCBCCC-CSSSCEEEB--CGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred CCCCcccccccEEcCCCcEEEE-eCCCCEEEE--ECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 3334445778999999997766 678877544 444443221 11110 125667776665544332211 12
Q ss_pred CCCcccCCCCCeeeeecc---ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccce-e
Q psy4579 107 KGGNVQLPNEDAQFDASN---YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV-E 182 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v-~ 182 (368)
.++.+.+|+.++.....+ ..|...+.+++|||+| +.||.++. +.|++||+.++.. ......+...+ .
T Consensus 89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~-------~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQA-------IRVVSTGKEGVIY 159 (723)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCC-------EEEECCCBTTTEE
T ss_pred ceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCce-------EEEecCCCCCceE
Confidence 247888999876443222 3455569999999999 89998886 8999999987642 23333322221 0
Q ss_pred --------------cceeeEEeCCCCCeEEEeeCCC----------------------------------cEEEEECCCC
Q psy4579 183 --------------VRYGLSWNPSLNGYLLSASDDH----------------------------------TICLWDINAT 214 (368)
Q Consensus 183 --------------~~~~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwd~~~~ 214 (368)
...+++|+|+ ++.|++++.|+ .|++||+.++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 0027999999 88888887653 7888888775
Q ss_pred CCCCccccceeeeec------ccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCC
Q psy4579 215 PKENRVIDAKTIFTG------HTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 288 (368)
Q Consensus 215 ~~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 288 (368)
.. ...+.. +...+..++|+|. +. +++....- . .....+.+|+..+
T Consensus 239 ~~-------~~~l~~~~~~~~~~~~~~~~~~SpD--------g~--~l~~~~~~--~----------~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 239 TH-------DLEMMPPDDPRMREYYITMVKWATS--------TK--VAVTWLNR--A----------QNVSILTLCDATT 289 (723)
T ss_dssp CC-------CEECCCCCCGGGSSEEEEEEEESSS--------SE--EEEEEEET--T----------SCEEEEEEEETTT
T ss_pred ce-------eEEeeCCccCCCccceeEEEEEeCC--------Ce--EEEEEEcC--C----------CCeEEEEEEeCCC
Confidence 32 122222 3556777888751 11 11111000 0 0111234455555
Q ss_pred CceeeeeecCccccee----EEEEeCCCCcEEEE-ecCCC------eEEEEE
Q psy4579 289 GKIEIEIKINHEGEVN----RARYMPQNPCVIAT-KTPSS------DVLVFD 329 (368)
Q Consensus 289 ~~~~~~~~~~h~~~i~----~~~~~p~~~~~las-gs~Dg------~i~iwd 329 (368)
++........|...+. .++|+|+|..++.. +..|+ .|.+||
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 5544433323444443 78999999666544 56777 466666
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.73 E-value=4e-17 Score=159.80 Aligned_cols=257 Identities=12% Similarity=0.093 Sum_probs=158.6
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeec---cccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKG---THTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA 118 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~ 118 (368)
.+.+++|+|||++|++++. +.+ +.|++..+ ....-......+..+.|.+++..+.... ++.|.+|+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i--~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GEL--YLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEE--EEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcE--EEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCC
Confidence 3778999999999998876 555 55566555 2221112223367777876665444332 45899999875
Q ss_pred eeeeccc-cCCCC----------------ceeeEecCCCCCeeEEEeCCC------------------------------
Q psy4579 119 QFDASNY-DTDKG----------------GYGLSWNPSLNGYLLSASDDH------------------------------ 151 (368)
Q Consensus 119 ~~~~~~~-~h~~~----------------v~~l~~sp~~~~~lasg~~dg------------------------------ 151 (368)
.....+. .+... +.+++|+|+| +.|+.++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 4333322 23222 5889999999 8899988766
Q ss_pred ---cEEEEeCCC-CCCCCcccccceeee--ccccceecceeeEEeCCCCCeEEEeeC-----CCcEEEEECCCCCCCCcc
Q psy4579 152 ---TICLWDINA-TPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLNGYLLSASD-----DHTICLWDINATPKENRV 220 (368)
Q Consensus 152 ---~v~iwd~~~-~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~ 220 (368)
.|.+||+.+ +.. ..... .|...+. .++| |+ +..|+.++. +..|.+||+.++.
T Consensus 261 ~~~~l~~~d~~~~~~~-------~~~~~~~~~~~~~~---~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~----- 323 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQT-------QWIDLGKEQDIYLA---RVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQ----- 323 (741)
T ss_dssp CEEEEEEECSSTTCCC-------EEECCCSCSSEEEE---EEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCC-----
T ss_pred CeeEEEEEECCCCCce-------EEecCCCCcceEEE---EEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCc-----
Confidence 788899887 642 12221 4667775 9999 99 888876653 6789999998863
Q ss_pred ccceeeeecccc----cEeEEEEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeee
Q psy4579 221 IDAKTIFTGHTA----VVEDYSIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 294 (368)
Q Consensus 221 ~~~~~~~~~~~~----~v~~v~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 294 (368)
....+..+.. .+..++|++ .++.++..++...+|.. +. .+. ...
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--------------------------~~-~~~-~~~ 373 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI--------------------------DS-KGK-AAA 373 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE--------------------------CS-SSC-EEE
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE--------------------------cC-CCC-eee
Confidence 2333333332 344666754 12222222222222222 11 122 233
Q ss_pred eecCcccceeEE-EEeCCCCcEEEEecCCC--eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 295 IKINHEGEVNRA-RYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 295 ~~~~h~~~i~~~-~~~p~~~~~lasgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+. .|...|..+ .|+|++..++++++.|+ .++||++.... .....+.+ ...+.+++|+|+.
T Consensus 374 l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g---------~~~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 374 LT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG---------GQPQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC---------CCCEECCC-SCSEEEEEECTTS
T ss_pred ee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC---------CCeeeccc-CCCceEEEECCCC
Confidence 33 677788887 59999976777777777 89999986321 22234444 5667888998864
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=5.7e-17 Score=139.90 Aligned_cols=222 Identities=10% Similarity=0.027 Sum_probs=140.6
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCe-eeeecc-ccC-CCCceeeEecCCCCCeeEEEe--CCCcEEEEeCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-QFDASN-YDT-DKGGYGLSWNPSLNGYLLSAS--DDHTICLWDIN 159 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~-~~h-~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~ 159 (368)
.+.++.+.+.+..+... .++.|.+|+.++ ...... ..| ...+.+++|+|++ +.|++++ .++..+||.++
T Consensus 43 ~v~~~~~spdg~~l~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLN-----SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp CCEEEEECTTSSEEEEE-----ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEE
T ss_pred ceEeeEECCCCCEEEEE-----cCCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEE
Confidence 35667776655544432 368999999876 443333 334 4789999999999 8899988 44566666654
Q ss_pred CCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE-EeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 160 ATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
.... ....+..+.. + ..++|+|+ +..|+ +++.|+.++||++..... ....+..+...+.+++
T Consensus 117 ~~~~------~~~~~~~~~~-~---~~~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~ 179 (297)
T 2ojh_A 117 STGG------TPRLMTKNLP-S---YWHGWSPD-GKSFTYCGIRDQVFDIYSMDIDSG------VETRLTHGEGRNDGPD 179 (297)
T ss_dssp TTCC------CCEECCSSSS-E---EEEEECTT-SSEEEEEEEETTEEEEEEEETTTC------CEEECCCSSSCEEEEE
T ss_pred CCCC------ceEEeecCCC-c---cceEECCC-CCEEEEEECCCCceEEEEEECCCC------cceEcccCCCccccce
Confidence 3221 1233443433 5 38999999 67665 888999999999643321 1344556777889999
Q ss_pred Eee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcE
Q psy4579 239 IHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCV 315 (368)
Q Consensus 239 ~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 315 (368)
|++ .++.+...++...+|.... .+.....+. .|...+.+++|+|++. .
T Consensus 180 ~s~dg~~l~~~~~~~~~~~i~~~~~---------------------------~~~~~~~~~-~~~~~~~~~~~s~dg~-~ 230 (297)
T 2ojh_A 180 YSPDGRWIYFNSSRTGQMQIWRVRV---------------------------DGSSVERIT-DSAYGDWFPHPSPSGD-K 230 (297)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEET---------------------------TSSCEEECC-CCSEEEEEEEECTTSS-E
T ss_pred ECCCCCEEEEEecCCCCccEEEECC---------------------------CCCCcEEEe-cCCcccCCeEECCCCC-E
Confidence 975 1222222233334433221 112222232 5777899999999995 5
Q ss_pred EEEecCC-----------CeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeeee
Q psy4579 316 IATKTPS-----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCYL 366 (368)
Q Consensus 316 lasgs~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~~ 366 (368)
|++++.+ +.|++||+.. ++...+..+.+|...+.+++|+|+..
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDG--------GNVETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTS--------CSCEEEEEEEESTTTSCSCCBCTTSS
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCC--------CCceeeeccCCCCcccccceECCCCC
Confidence 5555554 5699999974 22333444558899999999999753
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=3.3e-16 Score=135.12 Aligned_cols=203 Identities=11% Similarity=0.089 Sum_probs=135.3
Q ss_pred CCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCC-CCCCCcccccceeeeccc-cceec
Q psy4579 106 DKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINA-TPKENRVIDAKTIFTGHT-AVVEV 183 (368)
Q Consensus 106 ~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~h~-~~v~~ 183 (368)
..++.|.+|+........+..|...|.+++|+|++ ++|++++ ++.|++||+.+ +. ......+|. ..+.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~- 88 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICNN- 88 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBCS-
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCC-------ceEecccccccccc-
Confidence 35789999998876666777899999999999999 8888876 88999999987 53 234444553 5564
Q ss_pred ceeeEEeCCCCCeEEEee--CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCCccceEEE
Q psy4579 184 RYGLSWNPSLNGYLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDEQNHLLIA 258 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~~~~~~~~ 258 (368)
+++|+|+ +.+|++++ .++...||.+..... ....+..+ ..+..++|+| .++.+...++...+|..
T Consensus 89 --~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 89 --DHGISPD-GALYAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp --CCEECTT-SSEEEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred --ceEECCC-CCEEEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 8999999 88999988 445666665533211 12233323 3477788875 12222222232333322
Q ss_pred EeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCC
Q psy4579 259 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD 338 (368)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~ 338 (368)
. ..++. ...+ ..|...+.+++|+|++..+++++..|+.+++|+++..
T Consensus 159 ~--------------------------~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~----- 205 (297)
T 2ojh_A 159 D--------------------------IDSGV-ETRL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD----- 205 (297)
T ss_dssp E--------------------------TTTCC-EEEC-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-----
T ss_pred E--------------------------CCCCc-ceEc-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCC-----
Confidence 1 11122 1222 2577889999999999656656667999999998631
Q ss_pred CCCCCCCceeeecccCceeeecceeee
Q psy4579 339 PNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 339 ~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
......+..|...+.+++|+|+.
T Consensus 206 ----~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 206 ----GSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp ----SSCEEECCCCSEEEEEEEECTTS
T ss_pred ----CCCcEEEecCCcccCCeEECCCC
Confidence 23345667788889999999864
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.70 E-value=2.9e-16 Score=147.74 Aligned_cols=290 Identities=13% Similarity=0.137 Sum_probs=172.5
Q ss_pred hhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCC----
Q psy4579 18 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPN---- 93 (368)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 93 (368)
....+|+..+..+...+.. ...+..++|+||+++|.+++.++.+.+|+.....+..............+.+.+
T Consensus 159 ~~V~v~D~~t~~~~~~i~~---g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~ 235 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDT---GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 235 (543)
T ss_dssp TEEEEEETTTCCEEEEEEC---STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred CeEEEEECCCceEEEEEec---CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCC
Confidence 3455566655555444432 233678999999999999999988866554113333222211122356666765
Q ss_pred CccccccCCcccCCCCcccCCCCCeeee-ecccc----------CC-CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCC
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNEDAQFD-ASNYD----------TD-KGGYGLSWNPSLNGYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~----------h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 161 (368)
++..+..+.+. +++|.+||...... ..+.. |. ..+.++.++|+++.++++...++.|.+||+.+.
T Consensus 236 dg~~l~v~~~~---~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~ 312 (543)
T 1nir_A 236 EDRYTIAGAYW---PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312 (543)
T ss_dssp TTTEEEEEEEE---SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred CCCEEEEEEcc---CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence 55555444432 78899998754322 22111 33 378999999988678888889999999999875
Q ss_pred CCCCcccccceeeeccccceecceeeEEeCCCCCeEE-EeeCCCcEEEEECCCCCCCCccccceeeeec----ccccEeE
Q psy4579 162 PKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTG----HTAVVED 236 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~v~~ 236 (368)
... ....+ .+...+. ++.|+|+ +.+|+ ++..+++|.+||+.++. +...+.. |......
T Consensus 313 ~~l-----~~~~i-~~~~~~~---~~~~spd-g~~l~va~~~~~~v~v~D~~tg~-------l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 313 DNL-----TVTSI-GAAPFLH---DGGWDSS-HRYFMTAANNSNKVAVIDSKDRR-------LSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp SSC-----EEEEE-ECCSSCC---CEEECTT-SCEEEEEEGGGTEEEEEETTTTE-------EEEEEECSSSBCCTTCEE
T ss_pred Ccc-----eeEEe-ccCcCcc---CceECCC-CCEEEEEecCCCeEEEEECCCCe-------EEEeeccCCCCCCCCCcc
Confidence 421 11123 2444453 8999999 77655 55668999999999872 3344432 4322222
Q ss_pred EEEee---ecccccC-CCCccceEEEEeecCCcccccccccccCCCCCcccccCCC-------CceeeeeecCcccceeE
Q psy4579 237 YSIHR---LILGTHT-SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS-------GKIEIEIKINHEGEVNR 305 (368)
Q Consensus 237 v~~~~---~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~h~~~i~~ 305 (368)
+ ++| .++.+.. +++.+.+ |+..+ .++...+. +|.+.+..
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v----------------------------~d~~~~~~~~~~~~~v~~l~-~~g~~~~~ 425 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISL----------------------------IGTDPKNHPQYAWKKVAELQ-GQGGGSLF 425 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEE----------------------------EECCTTTCTTTBTSEEEEEE-CSCSCCCC
T ss_pred c-CCCCCccEEEeccCCCceEEE----------------------------EEeCCCCCchhcCeEEEEEE-cCCCCceE
Confidence 2 121 1222221 2222222 22222 44555555 78888899
Q ss_pred EEEeCCCCcEEEEec-------CCCeEEEEECCCCCCCCCCCCCCCCce---eeecccCceeeecceeee
Q psy4579 306 ARYMPQNPCVIATKT-------PSSDVLVFDYTKHPSKPDPNGECHPDL---RLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 306 ~~~~p~~~~~lasgs-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~gh~~~V~~l~w~p~~ 365 (368)
++|+|+++ .|++++ .+++|.+||+.+..... +..++. .+..|...+..++|+|..
T Consensus 426 v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 426 IKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKY----QVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCC----EEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCe----EEeechhhcccCCCCCceEeccCCCCC
Confidence 99999995 555655 27899999998632110 000000 023567788888888764
No 137
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.68 E-value=5.2e-16 Score=141.42 Aligned_cols=200 Identities=8% Similarity=0.029 Sum_probs=136.7
Q ss_pred CCCC----cccCCCC--C-eeee--eccccCCCCceeeEecCC--------------CCCeeEEEeCC------CcEEEE
Q psy4579 106 DKGG----NVQLPNE--D-AQFD--ASNYDTDKGGYGLSWNPS--------------LNGYLLSASDD------HTICLW 156 (368)
Q Consensus 106 ~~~g----~i~i~~~--~-~~~~--~~~~~h~~~v~~l~~sp~--------------~~~~lasg~~d------g~v~iw 156 (368)
..+| .+++||. . ++.+ ..+.+|...+..+++++. + ..++.++.+ +.|++|
T Consensus 86 ~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i~ 164 (415)
T 2hqs_A 86 NPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRVS 164 (415)
T ss_dssp CTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEEE
T ss_pred CCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEEE
Confidence 3567 8999998 4 3443 446788888988888751 4 566666654 799999
Q ss_pred eCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC---cEEEEECCCCCCCCccccceeeeeccccc
Q psy4579 157 DINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFTGHTAV 233 (368)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
|+... ....+.+|...+. +++|+|+ +..|++++.|+ .|++||++++. ...+..|...
T Consensus 165 d~~g~--------~~~~l~~~~~~v~---~~~~Spd-g~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~ 224 (415)
T 2hqs_A 165 DYDGY--------NQFVVHRSPQPLM---SPAWSPD-GSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRH 224 (415)
T ss_dssp ETTSC--------SCEEEEEESSCEE---EEEECTT-SSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSC
T ss_pred cCCCC--------CCEEEeCCCCcce---eeEEcCC-CCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCc
Confidence 99754 3477788988885 9999999 89999999885 99999998863 2345667788
Q ss_pred EeEEEEeee---cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeC
Q psy4579 234 VEDYSIHRL---ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 310 (368)
Q Consensus 234 v~~v~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 310 (368)
+.+++|+|. ++.+.+.++... +..|+..+++. ..+. .|...+.+++|+|
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~--------------------------i~~~d~~~~~~-~~l~-~~~~~~~~~~~sp 276 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLN--------------------------LYVMDLASGQI-RQVT-DGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCE--------------------------EEEEETTTCCE-EECC-CCSSCEEEEEECT
T ss_pred ccCEEEcCCCCEEEEEEecCCCce--------------------------EEEEECCCCCE-EeCc-CCCCcccceEECC
Confidence 999999861 221222222222 23333334443 2232 6888999999999
Q ss_pred CCCcEEEEecCCC--eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 311 QNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 311 ~~~~~lasgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++..+++++..++ .|.+||+.. .....+..|...+.+++|+|+.
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~-----------~~~~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNING-----------GAPQRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTS-----------SCCEECCCSSSEEEEEEECTTS
T ss_pred CCCEEEEEECCCCCcEEEEEECCC-----------CCEEEEecCCCcccCeEECCCC
Confidence 9954444433355 677778764 1123455677788999999874
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.67 E-value=1.2e-15 Score=135.46 Aligned_cols=263 Identities=11% Similarity=0.042 Sum_probs=156.5
Q ss_pred ccCceeeEecCCcccccCCCC-------ccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCccc
Q psy4579 40 EWPSLTAQWLPDVTSVQLPNE-------DAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQ 112 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~ 112 (368)
.-.+..++|+|+++++.+++. ++.+ +.|+...+..............+.+.+++..+.... ..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v--~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVV--YRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGN---TVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEE--EEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEE---TTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccE--EEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEe---cCCCEEE
Confidence 344667999999998877653 3445 444443332211100000012233333333222222 2467899
Q ss_pred CCCCCeee-eeccccCCC---------CceeeEecCCCCCeeEEEe--CCCcEEEEeCCCCCCCCcccccceeeeccccc
Q psy4579 113 LPNEDAQF-DASNYDTDK---------GGYGLSWNPSLNGYLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAV 180 (368)
Q Consensus 113 i~~~~~~~-~~~~~~h~~---------~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 180 (368)
+|+..... ......+.. .+.+++|+|++ +.+++++ .++.|.+||..+++ ....+..+...
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~ 186 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIK-------LKTAIQNTGKM 186 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTE-------EEEEECCCCTT
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCc-------eEEEecCCCCc
Confidence 99976433 233322221 26889999998 6555554 58899999998763 33445534444
Q ss_pred eecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeee----cccccEeEEEEeeecccccCCCCccceE
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT----GHTAVVEDYSIHRLILGTHTSDEQNHLL 256 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~~~~~~~~~~d~~~~~~ 256 (368)
+. +++|+|+ +.++++++.++.|.+||+.++. ....+. ++...+..++|++. ...++
T Consensus 187 ~~---~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~d---------g~~l~ 246 (353)
T 3vgz_A 187 ST---GLALDSE-GKRLYTTNADGELITIDTADNK-------ILSRKKLLDDGKEHFFINISLDTA---------RQRAF 246 (353)
T ss_dssp CC---CCEEETT-TTEEEEECTTSEEEEEETTTTE-------EEEEEECCCSSSCCCEEEEEEETT---------TTEEE
T ss_pred cc---eEEECCC-CCEEEEEcCCCeEEEEECCCCe-------EEEEEEcCCCCCCcccceEEECCC---------CCEEE
Confidence 53 9999999 8889999999999999998763 233332 24445667777651 11222
Q ss_pred EEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCC
Q psy4579 257 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK 336 (368)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~ 336 (368)
+.. ...+.+..++..+++....+..++ ...++|+|++..++++...++.|.+||...
T Consensus 247 ~~~----------------~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---- 303 (353)
T 3vgz_A 247 ITD----------------SKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKS---- 303 (353)
T ss_dssp EEE----------------SSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTT----
T ss_pred EEe----------------CCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCC----
Confidence 221 112334455555566655554322 256999999977888877899999999964
Q ss_pred CCCCCCCCCceeeecccCceeeecceeee
Q psy4579 337 PDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 337 ~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
...+..+. ....+.+++|+|..
T Consensus 304 ------~~~~~~~~-~~~~~~~~~~s~dg 325 (353)
T 3vgz_A 304 ------YKVVKTFD-TPTHPNSLALSADG 325 (353)
T ss_dssp ------TEEEEEEE-CCSEEEEEEECTTS
T ss_pred ------CeEEEEEe-cCCCCCeEEEcCCC
Confidence 22222333 33467889998864
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.67 E-value=4.4e-16 Score=137.18 Aligned_cols=273 Identities=10% Similarity=0.076 Sum_probs=149.3
Q ss_pred hhhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCC-ccccccCcceeeeccc-cCCC-CCcEEEEEEecCC
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNE-DAQFDASNYDTDKGTH-TSDE-QNHLLIASVQLPN 93 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~~~ 93 (368)
+....+|...+..+...+... .. +. .++|+||++++.+++. ++.+ +.|+...+.. .... ........+.+.+
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~-~~-~~-~~~~s~dg~~l~~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLG-YD-FV-DTAITSDCSNVVVTSDFCQTL--VQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECC-CC-EE-EEEECSSSCEEEEEESTTCEE--EEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred CCeEEEEeCcccceeeeEEcc-CC-cc-eEEEcCCCCEEEEEeCCCCeE--EEEECCCCceeEEecccCCCCccceEECC
Confidence 345667777766655444422 22 34 8999999997666544 6666 5555554432 1110 0000111144544
Q ss_pred CccccccCCcccCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCc-EEEEeCCCCCCCCcccccce
Q psy4579 94 EDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHT-ICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~~~~~~~~ 172 (368)
++..+. ........+.|.+|+.+.........+.....+++|+|+|..++++...++. |.+|++........ .. ..
T Consensus 94 dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~-~~-~~ 170 (331)
T 3u4y_A 94 DDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD-TG-QE 170 (331)
T ss_dssp TSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE-EE-EE
T ss_pred CCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee-cC-Cc
Confidence 444333 2222111228999998764444445555667999999999335555566688 99999985432100 00 12
Q ss_pred eeeccccceecceeeEEeCCCCC-eEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCC
Q psy4579 173 IFTGHTAVVEVRYGLSWNPSLNG-YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDE 251 (368)
Q Consensus 173 ~~~~h~~~v~~~~~i~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~ 251 (368)
.+. ...... .++|+|+ ++ +++++..++.|.+||+.++... ..+..+.. ...+..++|+|. +
T Consensus 171 ~~~-~~~~~~---~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~----~~~~~~~~-~~~~~~~~~spd--------g 232 (331)
T 3u4y_A 171 FIS-GGTRPF---NITFTPD-GNFAFVANLIGNSIGILETQNPENI----TLLNAVGT-NNLPGTIVVSRD--------G 232 (331)
T ss_dssp EEC-SSSSEE---EEEECTT-SSEEEEEETTTTEEEEEECSSTTSC----EEEEEEEC-SSCCCCEEECTT--------S
T ss_pred ccc-CCCCcc---ceEECCC-CCEEEEEeCCCCeEEEEECCCCccc----ceeeeccC-CCCCceEEECCC--------C
Confidence 222 222343 9999999 66 5566667999999999876320 11333432 345567777651 0
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCce--eeeeec------CcccceeEEEEeCCCCcEEEEecCCC
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI--EIEIKI------NHEGEVNRARYMPQNPCVIATKTPSS 323 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~------~h~~~i~~~~~~p~~~~~lasgs~Dg 323 (368)
..+++... ..+.+..++..+++. ...+.. ........++|+|++..+++++..++
T Consensus 233 -~~l~v~~~----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 233 -STVYVLTE----------------STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp -SEEEEECS----------------SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred -CEEEEEEc----------------CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 11111110 001122233333333 111110 11122366899999977777777888
Q ss_pred eEEEEECCC
Q psy4579 324 DVLVFDYTK 332 (368)
Q Consensus 324 ~i~iwd~~~ 332 (368)
.|.+||+..
T Consensus 296 ~v~v~d~~~ 304 (331)
T 3u4y_A 296 ELKVFTISG 304 (331)
T ss_dssp EEEEEETTS
T ss_pred cEEEEEecC
Confidence 999999974
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=3.1e-16 Score=153.01 Aligned_cols=296 Identities=8% Similarity=0.038 Sum_probs=162.8
Q ss_pred hhhhhhhhcCcchheeeccccc-ccCceeeEecCCcccccCCCCcccc-------ccCcceeeeccc--cCCCCC-cEEE
Q psy4579 18 EEYKIWKKNTPFLYDLVMTHAL-EWPSLTAQWLPDVTSVQLPNEDAQF-------DASNYDTDKGTH--TSDEQN-HLLI 86 (368)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~l~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~-~~~i 86 (368)
..+++|+..+......+..+.. ...+.+++|+|||++|++++.++.+ .++.|++..+.. ...... ...+
T Consensus 37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 116 (723)
T 1xfd_A 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKL 116 (723)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCC
T ss_pred CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccc
Confidence 3677888877765544443322 1247899999999999998765432 124555554432 111111 1124
Q ss_pred EEEecCCCccccccCCcccCCCCcccCCCCCeeeeecc-ccCCCC------------------ceeeEecCCCCCeeEEE
Q psy4579 87 ASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASN-YDTDKG------------------GYGLSWNPSLNGYLLSA 147 (368)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~h~~~------------------v~~l~~sp~~~~~lasg 147 (368)
..+.|++++..+.... ++.|.+|+..+.....+ ..+... +.+++|+|+| +.||.+
T Consensus 117 ~~~~~SPdG~~la~~~-----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~ 190 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYA 190 (723)
T ss_dssp SBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEE
T ss_pred cccEECCCCCEEEEEE-----CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEE
Confidence 4555655554433222 36899999875333222 223333 3789999999 889888
Q ss_pred eCCC----------------------------------cEEEEeCCCCCCCCcccccceeeec------cccceecceee
Q psy4579 148 SDDH----------------------------------TICLWDINATPKENRVIDAKTIFTG------HTAVVEVRYGL 187 (368)
Q Consensus 148 ~~dg----------------------------------~v~iwd~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~i 187 (368)
+.|+ .|++||+.++.. ...+.. +...+. .+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-------~~~l~~~~~~~~~~~~~~---~~ 260 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-------DLEMMPPDDPRMREYYIT---MV 260 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-------CEECCCCCCGGGSSEEEE---EE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-------eEEeeCCccCCCccceeE---EE
Confidence 7553 789999987642 233333 355664 89
Q ss_pred EEeCCCCCeEEEeeC----CCcEEEEECCCCCCCCccccceeeeec-ccccEe----EEEEeeecccccCCCCccceEEE
Q psy4579 188 SWNPSLNGYLLSASD----DHTICLWDINATPKENRVIDAKTIFTG-HTAVVE----DYSIHRLILGTHTSDEQNHLLIA 258 (368)
Q Consensus 188 ~~~p~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~----~v~~~~~~~~~~~~d~~~~~~~~ 258 (368)
+|+|+ +.++++.+. +..|.+||+.++. ....+.. +...+. .++|+| |+ ..+...
T Consensus 261 ~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~sp--------dg-~~l~~~ 323 (723)
T 1xfd_A 261 KWATS-TKVAVTWLNRAQNVSILTLCDATTGV-------CTKKHEDESEAWLHRQNEEPVFSK--------DG-RKFFFI 323 (723)
T ss_dssp EESSS-SEEEEEEEETTSCEEEEEEEETTTCC-------EEEEEEEECSSCCCCCCCCCEECT--------TS-CSEEEE
T ss_pred EEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCc-------ceEEEEeccCCEEeccCCCceEcC--------CC-CeEEEE
Confidence 99999 778876643 3579999998763 2223322 223332 566664 11 111111
Q ss_pred EeecCCc-ccccccccccCCCCCccccc-CCCCc--eeeeeecCcccceeE-EEEeCCCCcEEEEecCC--CeEEEEECC
Q psy4579 259 SVQLPNE-DAQFDASNYDTDKGDFGGFG-SVSGK--IEIEIKINHEGEVNR-ARYMPQNPCVIATKTPS--SDVLVFDYT 331 (368)
Q Consensus 259 ~~~~~~~-~~~~~~~~~d~~~~~~~~~~-~~~~~--~~~~~~~~h~~~i~~-~~~~p~~~~~lasgs~D--g~i~iwd~~ 331 (368)
....... .... .+..++ ...+. ....+. .+...+.. ++|+|++..++.++..+ +.++||++.
T Consensus 324 ~~~~~~~~~~~~----------~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 324 RAIPQGGRGKFY----------HITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEECCSSSSCEE----------EEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EecccCCCccee----------EEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 0000000 0000 112222 11111 012222 23344444 69999996665566665 889999987
Q ss_pred CCCCCCCCCCCCCCceeeec---ccCceeeecceeee
Q psy4579 332 KHPSKPDPNGECHPDLRLRG---HQKEGLIEGTYNCY 365 (368)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g---h~~~V~~l~w~p~~ 365 (368)
... ......+.+ |...+..++|+|..
T Consensus 393 ~~~--------~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 393 TVG--------NFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp SST--------TCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CCC--------CCCcceecccccCCCCeEEEEECCCC
Confidence 421 111122332 67778889998863
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.66 E-value=2.3e-15 Score=141.58 Aligned_cols=267 Identities=9% Similarity=0.057 Sum_probs=168.3
Q ss_pred eEecCCcccccCCCCccccccCcceeeeccccCCCC-CcEEEEEEecCCCccccccCCcccCCCCcccCCCC--Ceeeee
Q psy4579 46 AQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQ-NHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE--DAQFDA 122 (368)
Q Consensus 46 ~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~--~~~~~~ 122 (368)
..++|++..+++++.++.+.+| +...+....... .+. +..+.+.++...+.... .++.|.+||. ......
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~--D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~----~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALV--DGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEE--ETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEE
T ss_pred cccCCCCEEEEEEcCCCeEEEE--ECCCceEEEEEecCcc-cceEEECCCCCEEEEEC----CCCeEEEEECcCCCCcEE
Confidence 3488999999999999988555 444443322211 111 45666655554444333 4699999998 443333
Q ss_pred ccccCCCCceeeEecC----CCCCeeEEEe-CCCcEEEEeCCCCCCCCcccccceeeec----------ccc-ceeccee
Q psy4579 123 SNYDTDKGGYGLSWNP----SLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTG----------HTA-VVEVRYG 186 (368)
Q Consensus 123 ~~~~h~~~v~~l~~sp----~~~~~lasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~----------h~~-~v~~~~~ 186 (368)
....+...+..++|+| +| +++++++ .+++|.+||..+.+ ++..+.. |.. .+. +
T Consensus 216 ~~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~---~ 284 (543)
T 1nir_A 216 AEIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVA---A 284 (543)
T ss_dssp EEEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEE---E
T ss_pred EEEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccc-------cceeecccCcccCccccccCCceE---E
Confidence 3344666789999999 99 8888887 58999999998764 3444443 222 453 8
Q ss_pred eEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcc
Q psy4579 187 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNED 266 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (368)
+.++|++..++++...+++|.+||+.+.... ....+ .+...+..+.|+|. ..++++..
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-----~~~~i-~~~~~~~~~~~spd---------g~~l~va~------- 342 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNL-----TVTSI-GAAPFLHDGGWDSS---------HRYFMTAA------- 342 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSC-----EEEEE-ECCSSCCCEEECTT---------SCEEEEEE-------
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcc-----eeEEe-ccCcCccCceECCC---------CCEEEEEe-------
Confidence 9999986777888899999999999875321 01122 24455666777641 01111111
Q ss_pred cccccccccCCCCCcccccCCCCceeeeeec---CcccceeEEEEeCCCCcEEEEec-CCCeEEEEECCCCCCCCCCCCC
Q psy4579 267 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKI---NHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGE 342 (368)
Q Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~lasgs-~Dg~i~iwd~~~~~~~~~~~~~ 342 (368)
. ..+.+.+||..++++...+.. .|.+....+ ++|++..+++|++ .|++|.+||....... ...
T Consensus 343 -------~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~ 409 (543)
T 1nir_A 343 -------N--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYA 409 (543)
T ss_dssp -------G--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTB
T ss_pred -------c--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhc
Confidence 0 112244455556666555543 266544443 5788547888876 6899999999752111 111
Q ss_pred CCCceeeecccCceeeecceeee
Q psy4579 343 CHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 343 ~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
...+..+.+|.+.+..+++||+-
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg 432 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKS 432 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTC
T ss_pred CeEEEEEEcCCCCceEEEcCCCC
Confidence 34556788898888999999875
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.65 E-value=1.3e-15 Score=148.22 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=148.9
Q ss_pred cCceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCe--
Q psy4579 41 WPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDA-- 118 (368)
Q Consensus 41 ~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-- 118 (368)
.++.+++|+|| ..++++ .++.+ +.|++..+...........+..+.|.+++..+... .++.|.+|+..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i--~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-----~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGL--VGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-----RNHNLYIARGGKLG 152 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEE--EEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-----ETTEEEEEECBCTT
T ss_pred cCceeEEECCC-CeEEEE-ECCEE--EEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-----ECCeEEEEecCccc
Confidence 47889999999 666555 34666 44454433221110000113344555544443332 368899999875
Q ss_pred ---eeeec-cccCCCC--------------ceeeEecCCCCCeeEEEe--------------------------------
Q psy4579 119 ---QFDAS-NYDTDKG--------------GYGLSWNPSLNGYLLSAS-------------------------------- 148 (368)
Q Consensus 119 ---~~~~~-~~~h~~~--------------v~~l~~sp~~~~~lasg~-------------------------------- 148 (368)
..... ...+... +.++.|+|+| +.|++++
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 33332 2222222 5899999999 8999887
Q ss_pred -CCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC-----cEEEEECCCCCCCCcccc
Q psy4579 149 -DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH-----TICLWDINATPKENRVID 222 (368)
Q Consensus 149 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~ 222 (368)
.+..|++||+.++... .......|...+. +++|+|+ ++.|++++.++ .|.+||+.++..
T Consensus 232 ~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~~---~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~------ 296 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTV-----YLQTGEPKEKFLT---NLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRF------ 296 (706)
T ss_dssp CCEEEEEEEETTTTEEE-----ECCCCSCTTCEEE---EEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCE------
T ss_pred CCeeEEEEEECCCCceE-----eeccCCCCceeEe---eEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCce------
Confidence 4467999999876311 0111124566674 9999999 88888887776 899999987621
Q ss_pred ceeeee--cccc---cEeEEEEee----ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceee
Q psy4579 223 AKTIFT--GHTA---VVEDYSIHR----LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI 293 (368)
Q Consensus 223 ~~~~~~--~~~~---~v~~v~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 293 (368)
...+. .+.. .+..++|++ .++.++..++...+|... . .+....
T Consensus 297 -~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~--------------------------~-~~~~~~ 348 (706)
T 2z3z_A 297 -VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD--------------------------T-TGRLIR 348 (706)
T ss_dssp -EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE--------------------------T-TSCEEE
T ss_pred -eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE--------------------------C-CCCEEE
Confidence 11111 1111 124455643 112222222222222221 0 233333
Q ss_pred eeecCcccceeE-EEEeCCCCcEEEEecCCC----eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 294 EIKINHEGEVNR-ARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 294 ~~~~~h~~~i~~-~~~~p~~~~~lasgs~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
.+. .|...+.. ++|+|++..++++++.++ .|..||+.. .. ...+ .|...+.+++|+|+.
T Consensus 349 ~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~----------~~-~~~l-~~~~~~~~~~~spdg 412 (706)
T 2z3z_A 349 QVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG----------GK-TKDL-TPESGMHRTQLSPDG 412 (706)
T ss_dssp ECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC----------CC-CEES-CCSSSEEEEEECTTS
T ss_pred ecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC----------CC-ceec-cCCCceEEEEECCCC
Confidence 333 56777876 799999977777777766 566666643 11 1222 367778899999864
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=5.5e-16 Score=147.58 Aligned_cols=235 Identities=10% Similarity=0.050 Sum_probs=145.1
Q ss_pred cccCceeeEecCCcccccCCCC-ccccccCcceeeeccccCCCCCc-EEEEEEecCCCccccccCCcccCCCCcccCC--
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNE-DAQFDASNYDTDKGTHTSDEQNH-LLIASVQLPNEDAQFDASNYDTDKGGNVQLP-- 114 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~-- 114 (368)
...|+.+++|+|||++||+++. +|.+.+|.. ..|....-.... ..+..+.|.++ ++........++....+|
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~--~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLY--DGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEE--ETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEE--cCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3568999999999999999877 888877763 333322211222 35667777654 333222111123334443
Q ss_pred CC--CeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCC
Q psy4579 115 NE--DAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192 (368)
Q Consensus 115 ~~--~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~ 192 (368)
+. ++... .+. ....+...+|+|++...+++.+.++.+.+||+.++. ...+..+.. . +++|+|+
T Consensus 96 ~~~~~g~~~-~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~~~--~---~~~~spD 160 (582)
T 3o4h_A 96 NTSRPGEEQ-RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--------LRELARLPG--F---GFVSDIR 160 (582)
T ss_dssp ETTSTTCCE-ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--------EEEEEEESS--C---EEEEEEE
T ss_pred eccCCCccc-ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--------EEEeecCCC--c---eEEECCC
Confidence 33 33222 222 222345678888874444444444555599998763 223333333 2 8999999
Q ss_pred CCCeEEEeeCC----CcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee--cccccCCCCccceEEEEeecCCcc
Q psy4579 193 LNGYLLSASDD----HTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL--ILGTHTSDEQNHLLIASVQLPNED 266 (368)
Q Consensus 193 ~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~ 266 (368)
+.+|++++.| +.|.+||+.++. ...+..|...+..++|+|. .+.+...++..
T Consensus 161 -G~~la~~~~~~~~~~~i~~~d~~~g~--------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~------------- 218 (582)
T 3o4h_A 161 -GDLIAGLGFFGGGRVSLFTSNLSSGG--------LRVFDSGEGSFSSASISPGMKVTAGLETAREA------------- 218 (582)
T ss_dssp -TTEEEEEEEEETTEEEEEEEETTTCC--------CEEECCSSCEEEEEEECTTSCEEEEEECSSCE-------------
T ss_pred -CCEEEEEEEcCCCCeEEEEEcCCCCC--------ceEeecCCCccccceECCCCCEEEEccCCCee-------------
Confidence 9999988877 789999998763 2456678888899999861 11111111111
Q ss_pred cccccccccCCCCCcccccCCCCceeeeeecCcccceeEEE--------EeCCCCcEEEEecCCCeEEEEEC
Q psy4579 267 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRAR--------YMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--------~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
.+..|+..+++.. .+ .+|...+..++ |+|+| .++++++.|+++++|++
T Consensus 219 -------------~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 219 -------------RLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp -------------EEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred -------------EEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 2334444455554 33 36777777777 99999 89999999999999998
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.62 E-value=1.1e-15 Score=148.83 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=156.9
Q ss_pred eeeEecCCcccccCCCCccccccCcceeeecccc--CC-CCC----------------cEEEEEEecCCCccccccCCcc
Q psy4579 44 LTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHT--SD-EQN----------------HLLIASVQLPNEDAQFDASNYD 104 (368)
Q Consensus 44 ~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----------------~~~i~~~~~~~~~~~~~~~~~~ 104 (368)
..++|+ ++.+++++.++ + .|+...|... .- ... ...+..+.+.++ ..+..+.
T Consensus 29 ~~~~w~--g~~~~~~~~~~-i---~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-- 99 (706)
T 2z3z_A 29 VGLQWM--GDNYVFIEGDD-L---VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-- 99 (706)
T ss_dssp TTCEEE--TTEEEEEETTE-E---EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE--
T ss_pred CCCcCc--CCeEEEEeCCc-E---EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE--
Confidence 347888 55666666666 3 5566655441 10 000 024677778665 4444332
Q ss_pred cCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCC-----CCCCCcccccceeeecccc
Q psy4579 105 TDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINA-----TPKENRVIDAKTIFTGHTA 179 (368)
Q Consensus 105 ~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~h~~ 179 (368)
++.+.+|+..+.....+..+...+.+++|+|+| +.||.+ .|+.|++||+.+ +.. ......+..
T Consensus 100 ---~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~-------~~~~~~~~~ 167 (706)
T 2z3z_A 100 ---QGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRA-------IAVTIDGTE 167 (706)
T ss_dssp ---TTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCC-------EESCSCCBT
T ss_pred ---CCEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCc-------EEeccCCCC
Confidence 589999999876666666778889999999999 888885 689999999987 532 122222222
Q ss_pred c--------------eecceeeEEeCCCCCeEEEee---------------------------------CCCcEEEEECC
Q psy4579 180 V--------------VEVRYGLSWNPSLNGYLLSAS---------------------------------DDHTICLWDIN 212 (368)
Q Consensus 180 ~--------------v~~~~~i~~~p~~~~~l~s~s---------------------------------~dg~i~iwd~~ 212 (368)
. +. ++.|+|+ +.+|++++ .+..|.+||+.
T Consensus 168 ~~~~g~~~~~ee~~~~~---~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEK---GTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp TEEESSCCGGGCTTCCC---SEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred CeEcccchhhhhcCCCc---eEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 1 33 8999999 89999887 45689999998
Q ss_pred CCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCcee
Q psy4579 213 ATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE 292 (368)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 292 (368)
++... .+.....|...+..++|+|. + ..+..... ....... .+..|+..+++..
T Consensus 244 ~~~~~-----~~~~~~~~~~~~~~~~~spd--------g-~~l~~~~~--~~~~~~~----------~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 244 TGKTV-----YLQTGEPKEKFLTNLSWSPD--------E-NILYVAEV--NRAQNEC----------KVNAYDAETGRFV 297 (706)
T ss_dssp TTEEE-----ECCCCSCTTCEEEEEEECTT--------S-SEEEEEEE--CTTSCEE----------EEEEEETTTCCEE
T ss_pred CCceE-----eeccCCCCceeEeeEEEECC--------C-CEEEEEEe--CCCCCee----------EEEEEECCCCcee
Confidence 76310 11111246677889999761 1 11211111 0111111 2333444444222
Q ss_pred eeee-cCccc---ceeEEEEeC--CCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceee-ecceeee
Q psy4579 293 IEIK-INHEG---EVNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLI-EGTYNCY 365 (368)
Q Consensus 293 ~~~~-~~h~~---~i~~~~~~p--~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-l~w~p~~ 365 (368)
..+. ..+.. .+.+++|+| ++ .++++++.||.++||++... ......+.+|...+.+ ++|+|..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~---------~~~~~~l~~~~~~v~~~~~~spdg 367 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTT---------GRLIRQVTKGEWEVTNFAGFDPKG 367 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETT---------SCEEEECCCSSSCEEEEEEECTTS
T ss_pred eEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECC---------CCEEEecCCCCeEEEeeeEEcCCC
Confidence 2221 12222 347789999 99 58888899999999998621 2333456677777876 7898864
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.62 E-value=1.8e-14 Score=146.23 Aligned_cols=172 Identities=9% Similarity=0.040 Sum_probs=123.1
Q ss_pred CceeeEec-CCcccccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCccc-CCCCCe
Q psy4579 42 PSLTAQWL-PDVTSVQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQ-LPNEDA 118 (368)
Q Consensus 42 ~~~~~~~~-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~-i~~~~~ 118 (368)
.+.+++|+ |||++|++++ ++.+ +.++...+..... ......+..+.|. ++..+.... .++.+. +|+..+
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s----~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQA--FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGT----REGDFLGIYDYRT 368 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEE--EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEE----TTEEEEEEEETTT
T ss_pred ccceeeecCCCCCEEEEEE-cCEE--EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEE----CCCceEEEEECCC
Confidence 57889999 9999999877 4555 4444433322111 2222256677777 444333222 255677 778776
Q ss_pred eeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE
Q psy4579 119 QFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 119 ~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
.....+.+|...+.+++|+|+| +.||+++.++.|++||+.++. ....+.+|.+.+. +++|+|+ +.+|+
T Consensus 369 ~~~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~-------~~~~~~~~~~~v~---~~~~SpD-G~~la 436 (1045)
T 1k32_A 369 GKAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGK-------PTVIERSREAMIT---DFTISDN-SRFIA 436 (1045)
T ss_dssp CCEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCC---CEEECTT-SCEEE
T ss_pred CCceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCc-------eEEeccCCCCCcc---ceEECCC-CCeEE
Confidence 5544555788899999999999 999999999999999998764 3345557888885 9999999 88888
Q ss_pred EeeCCC----------cEEEEECCCCCCCCccccceeeeecccccEeEEEEee
Q psy4579 199 SASDDH----------TICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241 (368)
Q Consensus 199 s~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 241 (368)
+++.++ .|++||+.++. ...+..|...+..++|++
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~--------~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRK--------IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTE--------EEECSCSSSBEEEEEECT
T ss_pred EEecCccccccCCCCCeEEEEECCCCc--------EEEeeCCCcccCCceEcC
Confidence 887654 89999998752 345666777788888875
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.61 E-value=3.7e-15 Score=151.24 Aligned_cols=255 Identities=10% Similarity=0.018 Sum_probs=168.3
Q ss_pred cccCceeeEecCCcccccCCCCccccccCcceeeeccc-cCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 39 LEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTH-TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 39 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+...+.++.|+|+ ..+.+++.++.+.+|.++...+.. ....... +....|.+++..+... .++.|.+|+.+
T Consensus 202 ~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~--~~~~~~SpDG~~la~~-----~~~~i~~~d~~ 273 (1045)
T 1k32_A 202 MSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFS-----KGGSIYIFNPD 273 (1045)
T ss_dssp CSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEE-----ETTEEEEECTT
T ss_pred CCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC--cceeeEcCCCCEEEEE-----eCCEEEEecCC
Confidence 4567888999998 666667777887777665433211 1111111 1122443333333222 37889999875
Q ss_pred eeeeecccc-----------CCCCceeeEec-CCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccc-ceecc
Q psy4579 118 AQFDASNYD-----------TDKGGYGLSWN-PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA-VVEVR 184 (368)
Q Consensus 118 ~~~~~~~~~-----------h~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~~ 184 (368)
+..+..+.. |...+.+++|+ |+| +.||.++ ++.|.+|++..+. ...+..|.. .+.
T Consensus 274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~--------~~~~~~~~~~~~~-- 341 (1045)
T 1k32_A 274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTY--------VLKVPEPLRIRYV-- 341 (1045)
T ss_dssp TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSB--------EEECSCCSCEEEE--
T ss_pred ceEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCc--------eEEccCCCcceEE--
Confidence 443333332 44579999999 999 8888887 8899999987652 344566666 664
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEE-EEECCCCCCCCccccceeeeecccccEeEEEEeee--cccccCCCCccceEEEEee
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTIC-LWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL--ILGTHTSDEQNHLLIASVQ 261 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~d~~~~~~~~~~~ 261 (368)
.++|+ + +..|++++.++.+. +||+.++. ...+.+|...+..++|+|. .++.++.
T Consensus 342 -~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~--------~~~l~~~~~~~~~~~~SpDG~~la~~~~------------ 398 (1045)
T 1k32_A 342 -RRGGD-T-KVAFIHGTREGDFLGIYDYRTGK--------AEKFEENLGNVFAMGVDRNGKFAVVAND------------ 398 (1045)
T ss_dssp -EECSS-S-EEEEEEEETTEEEEEEEETTTCC--------EEECCCCCCSEEEEEECTTSSEEEEEET------------
T ss_pred -eeeEc-C-CCeEEEEECCCceEEEEECCCCC--------ceEecCCccceeeeEECCCCCEEEEECC------------
Confidence 99999 7 88899998888888 99987652 2333467778888999761 1111111
Q ss_pred cCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCC----------CeEEEEECC
Q psy4579 262 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS----------SDVLVFDYT 331 (368)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~D----------g~i~iwd~~ 331 (368)
.+.+.+|+..+++...... +|.+.+.+++|+|+|. .|++++.+ +.|++||+.
T Consensus 399 ----------------~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 399 ----------------RFEIMTVDLETGKPTVIER-SREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp ----------------TSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred ----------------CCeEEEEECCCCceEEecc-CCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECC
Confidence 1234455555566554443 7889999999999995 55565554 499999997
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 332 KHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
. .. ...+.+|...+.+++|+|+.
T Consensus 461 ~----------g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 461 G----------RK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp T----------TE-EEECSCSSSBEEEEEECTTS
T ss_pred C----------Cc-EEEeeCCCcccCCceEcCCC
Confidence 4 12 45677888889999999864
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.57 E-value=1.1e-14 Score=128.53 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=126.3
Q ss_pred EEecCCCccccccCCcccCCCCcccCCCCC--e-e-eeeccccCCCCceeeEecCCCCCeeEEEe-CCCcEEEEeCCCCC
Q psy4579 88 SVQLPNEDAQFDASNYDTDKGGNVQLPNED--A-Q-FDASNYDTDKGGYGLSWNPSLNGYLLSAS-DDHTICLWDINATP 162 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~--~-~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~ 162 (368)
.+.+.+.+..+.... ..++.|.+|+.+ + . ...........+.+++|+|++ +.|++++ .++.|.+||+..+.
T Consensus 42 ~~~~spdg~~l~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGV---RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp CEEECTTSSEEEEEE---TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTE
T ss_pred eEEECCCCCEEEEee---cCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCc
Confidence 344544444333332 124899999875 2 2 122222233488999999999 7665554 58999999995221
Q ss_pred CCCcccccceeeeccccceecceeeEEeCCCCCeEEEee-CCCcEEEEECCCCCCCCcccccee--eeec-ccccEeEEE
Q psy4579 163 KENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKT--IFTG-HTAVVEDYS 238 (368)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~-~~~~v~~v~ 238 (368)
. ......+..+.. +. +++|+|+ +.++++++ .++.|.+||+.+.... .... .+.. ....+..++
T Consensus 118 ~----~~~~~~~~~~~~-~~---~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 118 P----VGVVDVVEGLDG-CH---SANISPD-NRTLWVPALKQDRICLFTVSDDGHL----VAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp E----EEEEEEECCCTT-BC---CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCE----EEEEEEEEECSTTCCEEEEE
T ss_pred c----ccccccccCCCC-ce---EEEECCC-CCEEEEecCCCCEEEEEEecCCCce----eeecccccccCCCCCcceEE
Confidence 1 113344444443 43 8999999 77777666 8999999999762211 1111 1222 234567788
Q ss_pred Eee---ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCcee--ee---eecCc--ccceeEEEE
Q psy4579 239 IHR---LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE--IE---IKINH--EGEVNRARY 308 (368)
Q Consensus 239 ~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~---~~~~h--~~~i~~~~~ 308 (368)
|+| .++.+...++.+.+| +... .+++.. .. ...++ ...+..++|
T Consensus 185 ~~pdg~~l~~~~~~~~~i~~~------------------~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 185 FHPNEQYAYCVNELNSSVDVW------------------ELKD--------PHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEE------------------ESSC--------TTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEE------------------EecC--------CCCcEEEEeeccccCccccccCCccceEE
Confidence 875 122222222222221 1100 111111 01 11111 345678999
Q ss_pred eCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 309 MPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 309 ~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
+|++..++++++.|+.|.+||+.... +....+..+..+.. +.+++|+|..
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~-~~~~~~s~dg 288 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDG------SVLSKEGFQPTETQ-PRGFNVDHSG 288 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTS------CCEEEEEEEECSSS-CCCEEECTTS
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCC------CceEEeeeecCCCc-cceEEECCCC
Confidence 99997777788889999999997311 11222223333333 7888888753
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=147.20 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=112.1
Q ss_pred ceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcE----EEEEEecCCCccccccCCc-----ccCCCCcccC
Q psy4579 43 SLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHL----LIASVQLPNEDAQFDASNY-----DTDKGGNVQL 113 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~-----~~~~~g~i~i 113 (368)
..+++|+||++.++.+ .++.+ +.|+...|........+. .+..+.|++++..+..... ..+.++.|.+
T Consensus 18 ~~~~~~s~dg~~~~~~-~d~~i--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 18 TFFPNWISGQEYLHQS-ADNNI--VLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCCCEESSSSEEEEEC-TTSCE--EEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCccEECCCCeEEEEc-CCCCE--EEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 4579999999766655 57777 555555443322111111 1456667665554432221 1123688999
Q ss_pred CCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcc--cccceeeeccccce------ecce
Q psy4579 114 PNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV--IDAKTIFTGHTAVV------EVRY 185 (368)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~h~~~v------~~~~ 185 (368)
|+.++............+.+++|||+| +.||.+. |+.|++||+.++....-. ......+.||...+ ....
T Consensus 95 ~d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 95 YDLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp EETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred EECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 998765441111223578999999999 8888886 789999999876421000 00001122332111 0002
Q ss_pred eeEEeCCCCCeEEEeeCCC----------------------------------cEEEEECCCCCCCC-ccccceeeeecc
Q psy4579 186 GLSWNPSLNGYLLSASDDH----------------------------------TICLWDINATPKEN-RVIDAKTIFTGH 230 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~-~~~~~~~~~~~~ 230 (368)
+++|+|+ +..|++++.|. .|++||+.++.... ..+.....+.+|
T Consensus 173 ~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 173 ALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred cEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 8999999 89999887653 78899988753100 000000223457
Q ss_pred cccEeEEEEee
Q psy4579 231 TAVVEDYSIHR 241 (368)
Q Consensus 231 ~~~v~~v~~~~ 241 (368)
...+..++|+|
T Consensus 252 ~~~~~~~~~Sp 262 (719)
T 1z68_A 252 DYYFSWLTWVT 262 (719)
T ss_dssp CEEEEEEEESS
T ss_pred cceEEEeEEeC
Confidence 77888899976
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.56 E-value=6.6e-14 Score=123.17 Aligned_cols=237 Identities=7% Similarity=0.021 Sum_probs=136.6
Q ss_pred EecCCccc-ccCCCCccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee--ee
Q psy4579 47 QWLPDVTS-VQLPNEDAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF--DA 122 (368)
Q Consensus 47 ~~~p~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~--~~ 122 (368)
.|.+++.+ +++++.++.+.++ +...+..... ....... .+.+.+++..+.+.. ..++.|.+|+..... ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~--d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~---~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFF--STDTLEILNQITLGYDFV-DTAITSDCSNVVVTS---DFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEE--ETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEE---STTCEEEEEECSSSSCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEE--eCcccceeeeEEccCCcc-eEEEcCCCCEEEEEe---CCCCeEEEEECCCCceeEE
Confidence 34455444 5666777777544 4443433222 1111223 666755554343333 246789999986543 34
Q ss_pred ccccCCCCceeeEecCCCCCeeEEEeCCC---cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCC-eEE
Q psy4579 123 SNYDTDKGGYGLSWNPSLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG-YLL 198 (368)
Q Consensus 123 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~-~l~ 198 (368)
....+..+..+++|+|++ ++++++..++ .|.+||+.++. ....+..+..+ . +++|+|+ ++ +++
T Consensus 78 ~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~~~~~-~---~~~~spd-g~~l~~ 144 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNK-------FISTIPIPYDA-V---GIAISPN-GNGLIL 144 (331)
T ss_dssp EEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTE-------EEEEEECCTTE-E---EEEECTT-SSCEEE
T ss_pred ecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCC-------eEEEEECCCCc-c---ceEECCC-CCEEEE
Confidence 444555566669999999 8888555553 89999998763 33445544443 3 9999999 65 555
Q ss_pred EeeCCCc-EEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCC
Q psy4579 199 SASDDHT-ICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD 277 (368)
Q Consensus 199 s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~ 277 (368)
++..++. |.+|++......... . ...+ ........++|+|. + .++++.. ..
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~-~-~~~~-~~~~~~~~~~~spd--------g-~~l~v~~----------------~~ 196 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDT-G-QEFI-SGGTRPFNITFTPD--------G-NFAFVAN----------------LI 196 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEE-E-EEEE-CSSSSEEEEEECTT--------S-SEEEEEE----------------TT
T ss_pred EecCCCceEEEEEECCCCcEeec-C-Cccc-cCCCCccceEECCC--------C-CEEEEEe----------------CC
Confidence 6666688 999999754321000 0 1111 22334566666641 0 1122111 11
Q ss_pred CCCcccccCCCCce---eeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKI---EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+.+|+..+++. ...+. +...+..++|+|++..++++...++.|.+||+..
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 22344455545554 33333 3467789999999966777777789999999975
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.54 E-value=1.1e-13 Score=123.40 Aligned_cols=268 Identities=12% Similarity=0.041 Sum_probs=140.5
Q ss_pred ceeeEecCCcccccCCCCc----cccccCcceeeecccc--CC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCC
Q psy4579 43 SLTAQWLPDVTSVQLPNED----AQFDASNYDTDKGTHT--SD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPN 115 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~~----~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~ 115 (368)
+..++|+||+++|++++.+ +.+.+|.++...|... .. .........+.+ .+..+..+.+ .++.+.+|+
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~---~~~~v~~~~ 126 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY---SGGSITVFP 126 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET---TTTEEEEEE
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC---CCCEEEEEE
Confidence 4458999999998887775 5665555544323211 11 000011122223 2333333332 468888888
Q ss_pred CCee-eee---cc-----------ccCCCCceeeEecCCCCCee-EEEeCCCcEEEEeCCCCCC----C-Cccc-cccee
Q psy4579 116 EDAQ-FDA---SN-----------YDTDKGGYGLSWNPSLNGYL-LSASDDHTICLWDINATPK----E-NRVI-DAKTI 173 (368)
Q Consensus 116 ~~~~-~~~---~~-----------~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~----~-~~~~-~~~~~ 173 (368)
.+.. ... .. ..+...+.+++|+|+| ++| +++..++.|++|++..... . .... .....
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 6521 111 11 1123345789999999 644 5555689999999875431 0 0000 00011
Q ss_pred eeccccceecceeeEEeCCCCCeEEEee-CCCcEEEEECCCCCCCCccccceeee---ecccccEeEEEEee---ecccc
Q psy4579 174 FTGHTAVVEVRYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIF---TGHTAVVEDYSIHR---LILGT 246 (368)
Q Consensus 174 ~~~h~~~v~~~~~i~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~~---~~~~~ 246 (368)
...+..... .++|+|+ +.++++++ .++.|.+||+.++.. ..+..+ ..+......++|+| .++.+
T Consensus 206 ~~~~~~~~~---~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~-----~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 206 KVAPGSGPR---HLIFNSD-GKFAYLINEIGGTVIAFRYADGML-----DEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp ECCTTCCEE---EEEECTT-SSEEEEEETTTCEEEEEEEETTEE-----EEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred ecCCCCCCe---EEEEcCC-CCEEEEEcCCCCeEEEEEecCCce-----EEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 112223343 8999999 77766666 699999999985421 111222 22333456777765 11111
Q ss_pred cCC-CCccceEEEEeecCCcccccccccccCCCCCcccccC--CCCce--eeeeecCcccceeEEEEeCCCCcEEEEecC
Q psy4579 247 HTS-DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS--VSGKI--EIEIKINHEGEVNRARYMPQNPCVIATKTP 321 (368)
Q Consensus 247 ~~~-d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~--~~~~~~~h~~~i~~~~~~p~~~~~lasgs~ 321 (368)
... ++. +.+|+. .+++. ..... . ...+..++|+|++..+++++..
T Consensus 277 ~~~~~~~----------------------------i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 277 NRLKADG----------------------------VAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp ECSSSCE----------------------------EEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETT
T ss_pred CCCCCCE----------------------------EEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECC
Confidence 111 111 222222 12332 12222 2 4567899999999666666568
Q ss_pred CCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecce
Q psy4579 322 SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTY 362 (368)
Q Consensus 322 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~ 362 (368)
++.|.+|++.... +....+ .-..+...+.|++|.
T Consensus 327 ~~~v~v~~~d~~~------g~~~~~-~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 327 TNVIQIFERDQAT------GLLTDI-KKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTEEEEEEECTTT------CCEEEC-SCCEECSSEEEEEEE
T ss_pred CCCEEEEEEECCC------CcEeec-ceeeeCCCCeEEEEc
Confidence 8999998775311 111110 012345678898886
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.52 E-value=9.2e-13 Score=116.72 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=119.2
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccc-------
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV------- 180 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~------- 180 (368)
++.|.+||...............+.+++|+|++..++++...++.|.+||..+++ ....+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~ 140 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE-------VKGRLVLDDRKRTEEVRP 140 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC-------EEEEEESCCCCCCSSCCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe-------eEEEEecCCCccccccCC
Confidence 6789999987654444444556688999999993356666778999999998764 23444433221
Q ss_pred --eecceeeEEeCCCCCeEEEee--CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceE
Q psy4579 181 --VEVRYGLSWNPSLNGYLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLL 256 (368)
Q Consensus 181 --v~~~~~i~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~ 256 (368)
+. +++|+|+ ++++++++ .++.|.+||+.++ .....+..+...+..++|++. ...++
T Consensus 141 ~~~~---~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~s~d---------g~~l~ 200 (353)
T 3vgz_A 141 LQPR---ELVADDA-TNTVYISGIGKESVIWVVDGGNI-------KLKTAIQNTGKMSTGLALDSE---------GKRLY 200 (353)
T ss_dssp CEEE---EEEEETT-TTEEEEEEESSSCEEEEEETTTT-------EEEEEECCCCTTCCCCEEETT---------TTEEE
T ss_pred CCCc---eEEECCC-CCEEEEEecCCCceEEEEcCCCC-------ceEEEecCCCCccceEEECCC---------CCEEE
Confidence 33 8999998 67666554 5889999999876 234444434444666777641 01122
Q ss_pred EEEeecCCcccccccccccCCCCCcccccCCCCceeeeeec---CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 257 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI---NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+.. ..+.+..++..+++....+.. ++...+..++|+|++..++++...++.|.+||+..
T Consensus 201 ~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 201 TTN-----------------ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp EEC-----------------TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred EEc-----------------CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 111 112344455555665554443 35567888999999977777777779999999965
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.51 E-value=1.1e-13 Score=121.83 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=114.6
Q ss_pred CCCcccCCCCCeeeeecccc--C----CCCceeeEecCCCCCeeEEEe------------CCCcEEEEeCCCCCCCCccc
Q psy4579 107 KGGNVQLPNEDAQFDASNYD--T----DKGGYGLSWNPSLNGYLLSAS------------DDHTICLWDINATPKENRVI 168 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~--h----~~~v~~l~~sp~~~~~lasg~------------~dg~v~iwd~~~~~~~~~~~ 168 (368)
.++.|.+|+........... + ...+.+++|+|+| +.|++++ .++.|.+||+.++.
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------ 126 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLS------ 126 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE------
T ss_pred CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCc------
Confidence 46889999976433222222 2 2378899999999 7888876 57999999998753
Q ss_pred ccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeeccc--ccEeEEEEee---ec
Q psy4579 169 DAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT--AVVEDYSIHR---LI 243 (368)
Q Consensus 169 ~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~~---~~ 243 (368)
....+.. ...+. +++|+|+ +.+|+++ ++.|.+||+.++. ....+..+. .++ .|++ .+
T Consensus 127 -~~~~~~~-~~~~~---~~~~s~d-g~~l~~~--~~~i~~~d~~~~~-------~~~~~~~~~~~~~~---~~s~dg~~l 188 (337)
T 1pby_B 127 -RRKAFEA-PRQIT---MLAWARD-GSKLYGL--GRDLHVMDPEAGT-------LVEDKPIQSWEAET---YAQPDVLAV 188 (337)
T ss_dssp -EEEEEEC-CSSCC---CEEECTT-SSCEEEE--SSSEEEEETTTTE-------EEEEECSTTTTTTT---BCCCBCCCC
T ss_pred -EEEEEeC-CCCcc---eeEECCC-CCEEEEe--CCeEEEEECCCCc-------EeeeeeccccCCCc---eeCCCccEE
Confidence 2334443 23343 8999999 7777777 6899999998763 122222111 111 2221 01
Q ss_pred ccccCCCCcc---------------------ceEEE--------------------EeecCCcccccccccccCCCCCcc
Q psy4579 244 LGTHTSDEQN---------------------HLLIA--------------------SVQLPNEDAQFDASNYDTDKGDFG 282 (368)
Q Consensus 244 ~~~~~~d~~~---------------------~~~~~--------------------~~~~~~~~~~~~~~~~d~~~~~~~ 282 (368)
+.+...+... .++++ .+.+.+++..+.+. .+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~ 263 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLE 263 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-----CCeEE
Confidence 1111111000 01111 12333333333222 24577
Q ss_pred cccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 283 GFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.|+..+++....+. ....+.+++|+|++. .|++++.|+.|++||+..
T Consensus 264 ~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 264 SFDLEKNASIKRVP--LPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEETTTTEEEEEEE--CSSCCCEEEECTTSC-EEEEESBSSEEEEEETTT
T ss_pred EEECCCCcCcceec--CCCceeeEEECCCCC-EEEEEcCCCcEEEEECcC
Confidence 78877777665554 335678999999995 444668899999999975
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.50 E-value=1.4e-13 Score=121.73 Aligned_cols=254 Identities=8% Similarity=0.030 Sum_probs=141.4
Q ss_pred eEecCCcccccCCCCccccccCcceeeeccccCC--CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee-ee
Q psy4579 46 AQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD--EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF-DA 122 (368)
Q Consensus 46 ~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-~~ 122 (368)
+++.++++.+++++.++.+.++ +...+..... .........+.+.+++..+..+. ..++.|.+|+..... ..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~--d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVV--DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEE--ETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEE--ECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCCCcEEEEeCCCCcEEE
Confidence 5678889999999899988554 4443322211 11100122344544443333222 347889999986433 32
Q ss_pred ccc-cC-----CCCceeeEecCCCCCeeEEEeCC------------CcEEEEeCCCCCCCCcccccceeeeccccceecc
Q psy4579 123 SNY-DT-----DKGGYGLSWNPSLNGYLLSASDD------------HTICLWDINATPKENRVIDAKTIFTGHTAVVEVR 184 (368)
Q Consensus 123 ~~~-~h-----~~~v~~l~~sp~~~~~lasg~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~ 184 (368)
... .+ ...+.+++|+|+| ++|++++.+ +.|.+||+.++... .....+..+. .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~-~~~-- 151 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFPMPR-QVY-- 151 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEECCS-SCC--
T ss_pred EEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeeccCCC-ccc--
Confidence 222 22 2348899999999 888888865 89999999874321 1233444333 353
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeeccc---------------------c---cEeEEEEe
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT---------------------A---VVEDYSIH 240 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------~---~v~~v~~~ 240 (368)
+++|+|+ +. ++.++. .|.+||+.++.. ...+..+. . ....+++.
T Consensus 152 -~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 152 -LMRAADD-GS-LYVAGP--DIYKMDVKTGKY-------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp -CEEECTT-SC-EEEESS--SEEEECTTTCCE-------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred -ceeECCC-Cc-EEEccC--cEEEEeCCCCce-------eccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 8999998 66 455544 499999987632 22222110 0 11222222
Q ss_pred e-------------ecccccCCCCccceE--------EEEeecCC-cccccccccccCCCCCcccccCCCCceeeeeecC
Q psy4579 241 R-------------LILGTHTSDEQNHLL--------IASVQLPN-EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN 298 (368)
Q Consensus 241 ~-------------~~~~~~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 298 (368)
+ .++......+....+ ...+.+.+ ++..+.+. .+.+..|+..+++....+.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~-- 292 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAAN-- 292 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEE--
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEc--
Confidence 1 000000011111111 11222233 33333222 3457778888877665554
Q ss_pred cccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 299 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 299 h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
....+.+++|+|++..++ +++.++.|++||+..
T Consensus 293 ~~~~~~~~~~s~dg~~l~-~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 293 LDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDT 325 (349)
T ss_dssp CSSCCCEEEECSSSSCEE-EESBSSEEEEEETTT
T ss_pred CCCCccceEECCCCCEEE-EecCCCeEEEEeccc
Confidence 234578999999996555 567889999999975
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=139.98 Aligned_cols=291 Identities=11% Similarity=0.083 Sum_probs=162.8
Q ss_pred hhhhhhhhhcCcchheeeccccc-ccCceeeEecCCcccccCCCC---------ccccccCcceeeecccc--CCCCCcE
Q psy4579 17 NEEYKIWKKNTPFLYDLVMTHAL-EWPSLTAQWLPDVTSVQLPNE---------DAQFDASNYDTDKGTHT--SDEQNHL 84 (368)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~l~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~ 84 (368)
+...++|+..+......+..+.. ...+.+++|+|||++|++++. ++.+ +.|++..|... .....
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i--~~~d~~~g~~~~~~~l~~-- 110 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY--YIYDLSNGEFVRGNELPR-- 110 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE--EEEETTTTEECCSSCCCS--
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE--EEEECCCCccccceecCc--
Confidence 34567777766654433332222 134789999999999999876 5666 55565555431 11111
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeecc--ccCCCCc-----------------eeeEecCCCCCeeE
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASN--YDTDKGG-----------------YGLSWNPSLNGYLL 145 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~--~~h~~~v-----------------~~l~~sp~~~~~la 145 (368)
.+..+.|++++..+... .++.|++|+..+.....+ .++...| .+++|+|+| +.||
T Consensus 111 ~~~~~~~SPDG~~la~~-----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la 184 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYV-----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLA 184 (719)
T ss_dssp SBCCEEECSSTTCEEEE-----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEE
T ss_pred ccccceECCCCCEEEEE-----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEE
Confidence 24556676665544432 267899999865332222 2232222 589999999 8999
Q ss_pred EEeCCC----------------------------------cEEEEeCCCCCCC-CcccccceeeeccccceecceeeEEe
Q psy4579 146 SASDDH----------------------------------TICLWDINATPKE-NRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 146 sg~~dg----------------------------------~v~iwd~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
.++.|. .|++||+.++... ...+.....+.+|...+. .++|+
T Consensus 185 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~S 261 (719)
T 1z68_A 185 YAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS---WLTWV 261 (719)
T ss_dssp EEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE---EEEES
T ss_pred EEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE---EeEEe
Confidence 988652 7889998875310 000000022346777775 99999
Q ss_pred CCCCCeEEEeeCC----CcEEEEE----CCCCCCCCccccceeee----ecccccEe-----EEEEeee----cccccCC
Q psy4579 191 PSLNGYLLSASDD----HTICLWD----INATPKENRVIDAKTIF----TGHTAVVE-----DYSIHRL----ILGTHTS 249 (368)
Q Consensus 191 p~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~~~~~~~~----~~~~~~v~-----~v~~~~~----~~~~~~~ 249 (368)
|+ +.++++.... ..|.+|| +.++.. ...+ .+|...+. .+.|++. ++.+...
T Consensus 262 pD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 262 TD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDC-------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp SS-SEEEEEEEESSTTEEEEEEEEECSSSSSEEC-------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred CC-CeEEEEEeccccCeEEEEEEcccCCCCCCce-------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 99 7777775433 2488899 665521 1222 34555555 5666541 1111111
Q ss_pred CCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecC----CCeE
Q psy4579 250 DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP----SSDV 325 (368)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~----Dg~i 325 (368)
++... +..++...++ ...+. .+...+..+.+. ++..+++++.. ++.+
T Consensus 334 ~g~~~--------------------------l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 334 DGYKH--------------------------IHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp TSCEE--------------------------EEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred CCceE--------------------------EEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 11111 2223333333 22222 455667777777 77677767665 6889
Q ss_pred EEEECCCCCCCCCCCCCCCCcee----eecccCceeeecceee
Q psy4579 326 LVFDYTKHPSKPDPNGECHPDLR----LRGHQKEGLIEGTYNC 364 (368)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~----~~gh~~~V~~l~w~p~ 364 (368)
++|.+.... +... ... +.+|...+..+.|+|+
T Consensus 385 ~l~~~~~~~------g~~~-~~~l~~~~~~~~~~~~~~~~s~d 420 (719)
T 1z68_A 385 NIYRISIGS------YPPS-KKCVTCHLRKERCQYYTASFSDY 420 (719)
T ss_dssp EEEEEECSS------SSCC-EEESSTTTTTTTBCBEEEEECGG
T ss_pred EEEEEeCCC------CCCC-ceeccCccCCCCCceEEEEECCC
Confidence 999986411 1000 011 2236666777777775
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.47 E-value=2.6e-13 Score=120.37 Aligned_cols=242 Identities=9% Similarity=0.114 Sum_probs=130.2
Q ss_pred ceeeEecCCcccccCCCC---ccccccCcceeeeccc--cCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC
Q psy4579 43 SLTAQWLPDVTSVQLPNE---DAQFDASNYDTDKGTH--TSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE 116 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~---~~~~~~~~~~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~ 116 (368)
+..++|+||++ |.+++. ++.+ +.|++..+.. ... ......+..+.+.++...+..+.+ .++.+.+|+.
T Consensus 42 p~~~a~spdg~-l~~~~~~~~~~~v--~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~---~~~~v~v~~~ 115 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKEDDEGGI--AAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY---HKGTAEVMKI 115 (347)
T ss_dssp CCCEEECTTCE-EEEEEEETTEEEE--EEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET---TTTEEEEEEE
T ss_pred cceEEEccCCe-EEEEEecCCCceE--EEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC---CCCEEEEEEe
Confidence 45599999999 555443 4666 4445443321 110 000011223444444433333332 4788999987
Q ss_pred Ce----eeeecccc---------CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccc-cee
Q psy4579 117 DA----QFDASNYD---------TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA-VVE 182 (368)
Q Consensus 117 ~~----~~~~~~~~---------h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~ 182 (368)
+. ........ +...+.+++|+|+| +++++...++.|++|++..... +.....+..+.+ .+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQ----LSEQSVLTMEAGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSC----EEEEEEEECCTTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCc----EEEeeeEEcCCCCCCc
Confidence 41 11111111 12348889999999 6777777899999999983221 011122222222 333
Q ss_pred cceeeEEeCCCCCe-EEEeeCCCcEEEEECCCCCCCCccccceeeeeccc------ccEeEEEEee---ecccccCCCCc
Q psy4579 183 VRYGLSWNPSLNGY-LLSASDDHTICLWDINATPKENRVIDAKTIFTGHT------AVVEDYSIHR---LILGTHTSDEQ 252 (368)
Q Consensus 183 ~~~~i~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~v~~v~~~~---~~~~~~~~d~~ 252 (368)
.++|+|+ +++ ++++..++.|.+|++...... +.....+.... ..+..++|+| .++.+...++.
T Consensus 191 ---~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 191 ---HLVFSPD-GQYAFLAGELSSQIASLKYDTQTGA---FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp ---EEEECTT-SSEEEEEETTTTEEEEEEEETTTTE---EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred ---eEEECCC-CCEEEEEeCCCCEEEEEEecCCCCc---eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 8999999 774 555677899999998752211 11122222211 3466777765 12122221222
Q ss_pred cceEEEEeecCCcccccccccccCCCCCcccccCC-CC--ceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEE
Q psy4579 253 NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV-SG--KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFD 329 (368)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~--~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd 329 (368)
+.+|+.. .+ +....+. .+...+..++|+|++..++++...++.|.+|+
T Consensus 264 ----------------------------v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 264 ----------------------------LAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp ----------------------------EEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----------------------------EEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 2222221 11 1222222 45566889999999965665555679999997
Q ss_pred CC
Q psy4579 330 YT 331 (368)
Q Consensus 330 ~~ 331 (368)
+.
T Consensus 315 ~d 316 (347)
T 3hfq_A 315 RD 316 (347)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.47 E-value=4.2e-13 Score=118.99 Aligned_cols=236 Identities=7% Similarity=-0.015 Sum_probs=132.8
Q ss_pred CCCcccCCCCCe---ee-eeccccCCCCceeeEecCCCCCeeEEEeC--CCcEEEEeCCCCCCCCcccccceeeeccccc
Q psy4579 107 KGGNVQLPNEDA---QF-DASNYDTDKGGYGLSWNPSLNGYLLSASD--DHTICLWDINATPKENRVIDAKTIFTGHTAV 180 (368)
Q Consensus 107 ~~g~i~i~~~~~---~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 180 (368)
.++.|.+|..+. +. ......+...+..++|+|+| ++++++.. ++.|++|++.++.. ..+..+..+...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~-----~~~~~~~~~~~~ 87 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTA-----HKLNTVVAPGTP 87 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEE-----EEEEEEEEESCC
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcE-----EEeeeeecCCCC
Confidence 345566665432 22 22344566788899999998 64444432 68999999976531 122333445555
Q ss_pred eecceeeEEeCCCCCeEEEee-CCCcEEEEECCCCCCCCccccceeeeec---------ccccEeEEEEee--ecccccC
Q psy4579 181 VEVRYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTG---------HTAVVEDYSIHR--LILGTHT 248 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~v~~v~~~~--~~~~~~~ 248 (368)
+. .++|+|+ +.+|++++ .++.|.+||+...... ..+..+.. +...+.+++|+| .++.+..
T Consensus 88 p~---~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 88 PA---YVAVDEA-RQLVYSANYHKGTAEVMKIAADGAL----TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp CS---EEEEETT-TTEEEEEETTTTEEEEEEECTTSCE----EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CE---EEEECCC-CCEEEEEeCCCCEEEEEEeCCCCCe----eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 54 9999999 88777777 7899999999643211 11222211 122477788875 2444444
Q ss_pred CCCccceEEEE---------------------eecCCcccccccccccCCCCCcccccCC--CCceeeeee-cCcc----
Q psy4579 249 SDEQNHLLIAS---------------------VQLPNEDAQFDASNYDTDKGDFGGFGSV--SGKIEIEIK-INHE---- 300 (368)
Q Consensus 249 ~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~-~~h~---- 300 (368)
.++.+.+|... +.+.++++.+.+. +...+.+.+|+.. +++...... ....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~--~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA--GELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE--ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE--eCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 44444444332 0111111111111 1122233444443 233211111 0111
Q ss_pred --cceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 301 --GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 301 --~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
..+..++|+|+|..++++...++.|.+|++... +....+..+..|...+.+++|+|..
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-------g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-------GHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-------GCEEEEEEEECSSSCCCEEEECTTS
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-------CcEEEeEEEecCCCCcCeEEECCCC
Confidence 357889999999767778888999999999631 1123333445566678899999864
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.43 E-value=5.2e-13 Score=130.65 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=90.6
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeecccc--CC-CC-CcEE--EEEEecCCCccccccCCc-----ccCCCCc
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHT--SD-EQ-NHLL--IASVQLPNEDAQFDASNY-----DTDKGGN 110 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~--i~~~~~~~~~~~~~~~~~-----~~~~~g~ 110 (368)
...+++|+||++.++++ ++.+.+| +...|... .. .. .... ...+.++++...+....- .-+..+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVF--NAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEE--ETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEE--ECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 35579999999998875 7777555 44433321 11 11 1111 122455554443322211 1112366
Q ss_pred ccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCccc--ccceeeecccccee------
Q psy4579 111 VQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI--DAKTIFTGHTAVVE------ 182 (368)
Q Consensus 111 i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~h~~~v~------ 182 (368)
+.+|+..+.....+..|...+...+|||+| +.||.++ |+.|++|++.++....-.. .....+.++...|-
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 779999877667777888899999999999 8888874 7899999998764211000 00012222221110
Q ss_pred cceeeEEeCCCCCeEEEeeCC
Q psy4579 183 VRYGLSWNPSLNGYLLSASDD 203 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~d 203 (368)
...++.|||| +..||.++.|
T Consensus 172 ~~~~~~wSpD-g~~la~~~~d 191 (740)
T 4a5s_A 172 AYSALWWSPN-GTFLAYAQFN 191 (740)
T ss_dssp SSBCEEECTT-SSEEEEEEEE
T ss_pred CCcceEECCC-CCEEEEEEEc
Confidence 0015899999 8888887644
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.42 E-value=6.1e-12 Score=110.50 Aligned_cols=221 Identities=9% Similarity=-0.012 Sum_probs=127.5
Q ss_pred CCCcccCCCCCeeeeeccccCCC---CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec-c----c
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDK---GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-H----T 178 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-h----~ 178 (368)
.++.|.+||.............. .+.+++|+|++..++++++.++.|.+||+.++. ....+.. + .
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDLSTPEERV 81 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEECCBTTEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEcCCccccc
Confidence 57889999986543333333333 588999999983345667778999999998764 2233332 1 2
Q ss_pred cceecceeeEEeCCCCCeEEEee------------CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee--ecc
Q psy4579 179 AVVEVRYGLSWNPSLNGYLLSAS------------DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR--LIL 244 (368)
Q Consensus 179 ~~v~~~~~i~~~p~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~ 244 (368)
..+. +++|+|+ +.++++++ .++.|.+||+.++. ....+.. ...+..++|++ ..+
T Consensus 82 ~~~~---~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 82 KSLF---GAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFEA-PRQITMLAWARDGSKL 149 (337)
T ss_dssp ECTT---CEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEEC-CSSCCCEEECTTSSCE
T ss_pred cccc---ceEECCC-CCEEEEEecccccccccccccCceEEEEECCCCc-------EEEEEeC-CCCcceeEECCCCCEE
Confidence 2343 8999998 87888775 57999999998752 2333332 34466777874 112
Q ss_pred cccCCCCccceEEEE-----eecCCcc--cccccccccCCCC---------------------------------Ccccc
Q psy4579 245 GTHTSDEQNHLLIAS-----VQLPNED--AQFDASNYDTDKG---------------------------------DFGGF 284 (368)
Q Consensus 245 ~~~~~d~~~~~~~~~-----~~~~~~~--~~~~~~~~d~~~~---------------------------------~~~~~ 284 (368)
... ++.+.+|... ..++... ... .+..... .+..+
T Consensus 150 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 211 2233333210 0000000 000 1110000 13455
Q ss_pred cCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceee
Q psy4579 285 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 285 ~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~ 364 (368)
+..+++........+...+.+++|+|++. .++++ ++.|.+||+.. ...+..+. ....+.+++|+|+
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~----------~~~~~~~~-~~~~~~~~~~s~d 290 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEK----------NASIKRVP-LPHSYYSVNVSTD 290 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTT----------TEEEEEEE-CSSCCCEEEECTT
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCC----------CcCcceec-CCCceeeEEECCC
Confidence 66666554211224566788999999995 45455 79999999964 22222332 2345778888876
Q ss_pred e
Q psy4579 365 Y 365 (368)
Q Consensus 365 ~ 365 (368)
.
T Consensus 291 g 291 (337)
T 1pby_B 291 G 291 (337)
T ss_dssp S
T ss_pred C
Confidence 3
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.40 E-value=2.4e-11 Score=106.92 Aligned_cols=247 Identities=11% Similarity=0.001 Sum_probs=148.2
Q ss_pred CceeeEecCCcccccCCCCccccc----------------------cCcceeeeccccCC--CCCcEEEEEEecCCCccc
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFD----------------------ASNYDTDKGTHTSD--EQNHLLIASVQLPNEDAQ 97 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 97 (368)
.+..++++|+|+.+++.+.++.+. +..++...|..... .........+.+.+.+.
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~- 103 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN- 103 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-
Confidence 366799999999988877764322 12222222221111 01111233444443333
Q ss_pred cccCCcccCCCCcccCCCCCee--eeecc---------ccCCCCceeeEecC-CCCCeeEEEe-CCCcEEEEeCCCCCCC
Q psy4579 98 FDASNYDTDKGGNVQLPNEDAQ--FDASN---------YDTDKGGYGLSWNP-SLNGYLLSAS-DDHTICLWDINATPKE 164 (368)
Q Consensus 98 ~~~~~~~~~~~g~i~i~~~~~~--~~~~~---------~~h~~~v~~l~~sp-~~~~~lasg~-~dg~v~iwd~~~~~~~ 164 (368)
+..+. ..++.|.+|+.++. ....+ ..+-.....|+++| ++ .++++.+ .++.|++|+....
T Consensus 104 l~v~d---~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g~--- 176 (329)
T 3fvz_A 104 YWVTD---VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSGK--- 176 (329)
T ss_dssp EEEEE---TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTSC---
T ss_pred EEEEE---CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCCC---
Confidence 22222 24678888988765 33332 23445688999999 66 8888886 6999999995432
Q ss_pred Ccccccceeeec----------cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee--ecccc
Q psy4579 165 NRVIDAKTIFTG----------HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTA 232 (368)
Q Consensus 165 ~~~~~~~~~~~~----------h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~ 232 (368)
....+.. +-... .+|+++|+.+.++++...++.|++||..++. .+..+ ..+..
T Consensus 177 -----~~~~~~~~g~~~~~~~~~~~~p---~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-------~~~~~~~~~~~~ 241 (329)
T 3fvz_A 177 -----FVTQWGEESSGSSPRPGQFSVP---HSLALVPHLDQLCVADRENGRIQCFKTDTKE-------FVREIKHASFGR 241 (329)
T ss_dssp -----EEEEECEECCSSSCCTTEESCE---EEEEEETTTTEEEEEETTTTEEEEEETTTCC-------EEEEECCTTTTT
T ss_pred -----EEEEeccCCCCCCCCCcccCCC---cEEEEECCCCEEEEEECCCCEEEEEECCCCc-------EEEEEeccccCC
Confidence 2233321 11223 3999999756777888889999999998552 23343 23555
Q ss_pred cEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeee--cCcccceeEEEEeC
Q psy4579 233 VVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK--INHEGEVNRARYMP 310 (368)
Q Consensus 233 ~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~p 310 (368)
.+..++++|-. ++... +. .. .-+.....+..++..+++....+. .++......++++|
T Consensus 242 ~~~~~~~~pg~-----------~~~~~------g~-~~--v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 242 NVFAISYIPGF-----------LFAVN------GK-PY--FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp CEEEEEEETTE-----------EEEEE------CC-CC--TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred CcceeeecCCE-----------EEEeC------CC-EE--eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 67778877611 11111 00 10 111222334555555666655542 25667789999999
Q ss_pred CCCcEEEEecCCCeEEEEECCC
Q psy4579 311 QNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 311 ~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+| .++++...+++|++|++..
T Consensus 302 dG-~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DG-TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TS-EEEEEESSSCCEEEEEEEE
T ss_pred CC-CEEEEECCCCEEEEEeCCc
Confidence 99 8999999999999999863
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.37 E-value=2.1e-12 Score=122.84 Aligned_cols=219 Identities=10% Similarity=-0.010 Sum_probs=130.1
Q ss_pred EEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeeccccCC-CCceeeEecCCCCCeeEEEeC---CCcEEEEeCCC
Q psy4579 85 LIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTD-KGGYGLSWNPSLNGYLLSASD---DHTICLWDINA 160 (368)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~ 160 (368)
.+..+.+.+++..+.... ..+|++++|++++.....+..|. ..+.+++|+|+ +++++++. +...++|.+..
T Consensus 23 ~~~~~~~~~DG~~la~~s---~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVG---FSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp CEEEEEEEETTTEEEEEE---EETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred chheeecCCCCCeEEEEE---ccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 356666655544443322 23789999998766666666666 68999999998 67777765 56667776654
Q ss_pred --CCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEE
Q psy4579 161 --TPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYS 238 (368)
Q Consensus 161 --~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 238 (368)
... ...+....+ .. ..+|+|++...+++.+.++.+.+||+.++. . ..+..+.. .+++
T Consensus 98 ~~~g~-------~~~l~~~~~-~~---~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-------~-~~l~~~~~--~~~~ 156 (582)
T 3o4h_A 98 SRPGE-------EQRLEAVKP-MR---ILSGVDTGEAVVFTGATEDRVALYALDGGG-------L-RELARLPG--FGFV 156 (582)
T ss_dssp TSTTC-------CEECTTSCS-BE---EEEEEECSSCEEEEEECSSCEEEEEEETTE-------E-EEEEEESS--CEEE
T ss_pred cCCCc-------cccccCCCC-ce---eeeeCCCCCeEEEEecCCCCceEEEccCCc-------E-EEeecCCC--ceEE
Confidence 221 122222222 22 568888844444444445555599998762 1 22222222 6777
Q ss_pred EeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE
Q psy4579 239 IHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 239 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las 318 (368)
|+|. + ..+...+..- . ....+..++..+++.. .+ ..|.+.+..++|+|+| ..|++
T Consensus 157 ~spD--------G-~~la~~~~~~---~----------~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG-~~l~~ 211 (582)
T 3o4h_A 157 SDIR--------G-DLIAGLGFFG---G----------GRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGM-KVTAG 211 (582)
T ss_dssp EEEE--------T-TEEEEEEEEE---T----------TEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTS-CEEEE
T ss_pred ECCC--------C-CEEEEEEEcC---C----------CCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCC-CEEEE
Confidence 7761 0 0111011000 0 0011333444444433 33 3788889999999999 56668
Q ss_pred ecCCC--eEEEEECCCCCCCCCCCCCCCCceeeecccCceeeec--------ceeee
Q psy4579 319 KTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEG--------TYNCY 365 (368)
Q Consensus 319 gs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~--------w~p~~ 365 (368)
++.|+ .|++||+.. .... .+.+|...+.+++ |+|+.
T Consensus 212 ~~~~~~~~i~~~d~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 212 LETAREARLVTVDPRD----------GSVE-DLELPSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp EECSSCEEEEEECTTT----------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred ccCCCeeEEEEEcCCC----------CcEE-EccCCCcChhhhhhccccceeEcCCC
Confidence 88888 899999974 2222 5678888888888 99874
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.37 E-value=2.4e-12 Score=115.73 Aligned_cols=263 Identities=9% Similarity=-0.036 Sum_probs=140.4
Q ss_pred eEecCCcccccCCCC-ccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeeec
Q psy4579 46 AQWLPDVTSVQLPNE-DAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDAS 123 (368)
Q Consensus 46 ~~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~ 123 (368)
.+|+|||++|++.+. ++...+|.++...+..... ......+....|.+++..+.... .++.+.+|+..+.....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~----~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK----DGRNLMRVDLATLEENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE----TTTEEEEEETTTCCEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe----CCCeEEEEECCCCccee
Confidence 789999999999877 7765567777665543221 11111111223544443333222 35678888887543332
Q ss_pred c-ccCCCCceeeE--ecCCCCCeeEEE----------------------eCCCcEEEEeCCCCCCCCcccccceeeeccc
Q psy4579 124 N-YDTDKGGYGLS--WNPSLNGYLLSA----------------------SDDHTICLWDINATPKENRVIDAKTIFTGHT 178 (368)
Q Consensus 124 ~-~~h~~~v~~l~--~sp~~~~~lasg----------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~ 178 (368)
+ ..+...+.... ++|++ ..++.. ..+..|.+||+.++. ...+..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~l~~~~ 187 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------STVILQEN 187 (388)
T ss_dssp EEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--------EEEEEEES
T ss_pred eeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--------eEEeecCC
Confidence 2 23344443333 48888 777642 245779999998763 34444555
Q ss_pred cceecceeeEEeC-CCCCeEEEeeCC------CcEEEEECCCCCCCCccccceeeeeccc--ccEeEEEEeeecccccCC
Q psy4579 179 AVVEVRYGLSWNP-SLNGYLLSASDD------HTICLWDINATPKENRVIDAKTIFTGHT--AVVEDYSIHRLILGTHTS 249 (368)
Q Consensus 179 ~~v~~~~~i~~~p-~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~ 249 (368)
..+. .++|+| + +..|+.++.+ ..|.++|+..+. ...+..+. ..+....|+|
T Consensus 188 ~~~~---~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~--------~~~l~~~~~~~~~~~~~~sp-------- 247 (388)
T 3pe7_A 188 QWLG---HPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTN--------MRKVKTHAEGESCTHEFWVP-------- 247 (388)
T ss_dssp SCEE---EEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCC--------CEESCCCCTTEEEEEEEECT--------
T ss_pred cccc---ccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCc--------eEEeeeCCCCcccccceECC--------
Confidence 6664 899999 8 7877776653 377888876542 12232232 2466667764
Q ss_pred CCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeee-cCccc---ceeEEEEeCCCCcEEEEe------
Q psy4579 250 DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK-INHEG---EVNRARYMPQNPCVIATK------ 319 (368)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~h~~---~i~~~~~~p~~~~~lasg------ 319 (368)
|+. .+...+.. ..... ..+..++..+++...... .++.. ....+.|+|+|..++++.
T Consensus 248 dg~-~l~~~~~~--~~~~~----------~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 248 DGS-ALVYVSYL--KGSPD----------RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp TSS-CEEEEEEE--TTCCC----------EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCC-EEEEEecC--CCCCc----------ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 111 11111110 00000 013444444454322111 11100 012237999996555443
Q ss_pred --cCCCeEEEEECCCCCCCCCCCCCCCCceeeecccC-----------ceeeecceeee
Q psy4579 320 --TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-----------EGLIEGTYNCY 365 (368)
Q Consensus 320 --s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~-----------~V~~l~w~p~~ 365 (368)
..+..|++||+.. .....+..|.. .+.+++|+|+.
T Consensus 315 ~~~~~~~i~~~d~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 315 KIENDPFLYVFNMKN-----------GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp --CCCCEEEEEETTT-----------TEEEEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred ccCCCCEEEEEeccC-----------CceEEeccccCcccccccccccCCCCccCCCCC
Confidence 5567999999974 12234555655 57888998864
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.33 E-value=1e-11 Score=119.82 Aligned_cols=269 Identities=7% Similarity=-0.017 Sum_probs=147.5
Q ss_pred cCceeeEecCCcccccCC--CCccccccCcceeeeccc-cCCCCCcEEEE---------EEecC--CCccc-cccCCccc
Q psy4579 41 WPSLTAQWLPDVTSVQLP--NEDAQFDASNYDTDKGTH-TSDEQNHLLIA---------SVQLP--NEDAQ-FDASNYDT 105 (368)
Q Consensus 41 ~~~~~~~~~p~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~---------~~~~~--~~~~~-~~~~~~~~ 105 (368)
-.+.+++|+++...++.. +.++...+|... ..+.. ...... ..+. ...+. +++.. +..+.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~--- 98 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH--- 98 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEB---
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEE---
Confidence 356778899887777665 556666666542 11111 111111 1111 12122 33333 33222
Q ss_pred CCCCcccCCCCC--e-eeeecccc-----CCCCceeeEecCCCCCeeEEEeCC----------CcEEEEeCCCCCCCCcc
Q psy4579 106 DKGGNVQLPNED--A-QFDASNYD-----TDKGGYGLSWNPSLNGYLLSASDD----------HTICLWDINATPKENRV 167 (368)
Q Consensus 106 ~~~g~i~i~~~~--~-~~~~~~~~-----h~~~v~~l~~sp~~~~~lasg~~d----------g~v~iwd~~~~~~~~~~ 167 (368)
..++.|.+++.+ + .....+.. |...+.+++|+|+| +.|+.++.| ..|++||+.+.....
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 175 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD-- 175 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC--
T ss_pred CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCcccc--
Confidence 235667777776 3 33344444 66788999999999 889888877 589999998721000
Q ss_pred cccceeee-ccccceecceeeEEeCCCCCeEEEeeCC--------CcEEEEECC-CCCCCCccccceeeeecccccEeEE
Q psy4579 168 IDAKTIFT-GHTAVVEVRYGLSWNPSLNGYLLSASDD--------HTICLWDIN-ATPKENRVIDAKTIFTGHTAVVEDY 237 (368)
Q Consensus 168 ~~~~~~~~-~h~~~v~~~~~i~~~p~~~~~l~s~s~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~v 237 (368)
......+. .+...+. .++|+|+ +..|+.++.+ ..|.+||+. ++... .......++...+..+
T Consensus 176 ~~~~~~l~~~~~~~~~---~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~----~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 176 RSAVRELSDDAHRFVT---GPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA----DTRTLLGGPEEAIAQA 247 (662)
T ss_dssp GGGSEESSCSCSSEEC---CCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE----EEEEEEEETTBCEEEE
T ss_pred CCceeEEEecCCCccc---CceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCccc----ccEEeCCCCCceEcce
Confidence 00123344 4445553 8999999 8888877755 379999998 34100 1122333456778888
Q ss_pred EEee--ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCccc--------ceeEEE
Q psy4579 238 SIHR--LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG--------EVNRAR 307 (368)
Q Consensus 238 ~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~--------~i~~~~ 307 (368)
.|+| .++.+...++...+|.+ +..+++.. .+...+.. .+..++
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~--------------------------~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRV--------------------------DPATGAAT-QLCRREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEE--------------------------CTTTCCEE-ESSCCSSBSSCCCCSTTCCSEE
T ss_pred EECCCCeEEEEECCCCCeEEEEE--------------------------ECCCCcee-ecccccccccCccccccCceEe
Confidence 8875 12222222222223222 11122211 11111111 156789
Q ss_pred EeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeee-ccee
Q psy4579 308 YMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIE-GTYN 363 (368)
Q Consensus 308 ~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l-~w~p 363 (368)
|+|++ .++++++. +.++||.+... ......+..|...+.++ ++++
T Consensus 301 ~~~~~-~~~~~~~~-~~~~l~~~d~~---------~~~~~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 301 PLANG-LIAVVHGK-GAAVLGILDPE---------SGELVDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp ECTTS-CEEEEEBS-SSCEEEEEETT---------TTEEEECCSSCCEEEEEEEEET
T ss_pred EeCCC-EEEEEEEc-CccEEEEEECC---------CCcEEEecCCCCeEEEEEecCC
Confidence 99998 68888888 99999955421 11234556676666666 4443
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.32 E-value=7.5e-12 Score=112.49 Aligned_cols=159 Identities=9% Similarity=0.009 Sum_probs=93.4
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeecccc--CCCCCcEE-EEEEecCCCccccccC-----------------
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHT--SDEQNHLL-IASVQLPNEDAQFDAS----------------- 101 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-i~~~~~~~~~~~~~~~----------------- 101 (368)
++..+.|+||+++|++++.++.+ +.+++..+... ........ .....+.++...+...
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l--~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNL--MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEE--EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CccceEEcCCCCEEEEEeCCCeE--EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 34467899999999998887766 44444433321 11111111 1111112222221100
Q ss_pred -CcccCCCCcccCCCCCeeeeeccccCCCCceeeEecC-CCCCeeEEEeCC------CcEEEEeCCCCCCCCccccccee
Q psy4579 102 -NYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNP-SLNGYLLSASDD------HTICLWDINATPKENRVIDAKTI 173 (368)
Q Consensus 102 -~~~~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~lasg~~d------g~v~iwd~~~~~~~~~~~~~~~~ 173 (368)
.+....++.|.+|++.+.....+..+...+..++|+| +| +.|+.++.+ ..|.++|..... ...
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--------~~~ 230 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN--------MRK 230 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC--------CEE
T ss_pred hhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc--------eEE
Confidence 0112345678888887655556667778899999999 98 777776653 367777776542 233
Q ss_pred eeccc--cceecceeeEEeCCCCCeEEEeeC-CC----cEEEEECCCCC
Q psy4579 174 FTGHT--AVVEVRYGLSWNPSLNGYLLSASD-DH----TICLWDINATP 215 (368)
Q Consensus 174 ~~~h~--~~v~~~~~i~~~p~~~~~l~s~s~-dg----~i~iwd~~~~~ 215 (368)
+..+. ..+. .+.|+|+ +..|+..+. ++ .|.+||+.++.
T Consensus 231 l~~~~~~~~~~---~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 231 VKTHAEGESCT---HEFWVPD-GSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp SCCCCTTEEEE---EEEECTT-SSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred eeeCCCCcccc---cceECCC-CCEEEEEecCCCCCcceEEEEecCCCc
Confidence 43343 2343 7899999 666654433 22 39999998864
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.31 E-value=1.7e-11 Score=118.24 Aligned_cols=160 Identities=12% Similarity=0.066 Sum_probs=101.0
Q ss_pred eeEec--CCccc-ccCCCCccccccCcceee--e-ccc-cCCC-C---CcEEEEEEecCCCccccccCCccc------CC
Q psy4579 45 TAQWL--PDVTS-VQLPNEDAQFDASNYDTD--K-GTH-TSDE-Q---NHLLIASVQLPNEDAQFDASNYDT------DK 107 (368)
Q Consensus 45 ~~~~~--p~~~~-l~~~~~~~~~~~~~~~~~--~-~~~-~~~~-~---~~~~i~~~~~~~~~~~~~~~~~~~------~~ 107 (368)
.+.|+ ||++. |++++.. ...+|.++.. . +.. .... . ....+..+.|.+++..+.....+. ..
T Consensus 81 ~~~~~~SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFG-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTT-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECC-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 56676 99999 8876543 3445666554 1 211 1111 1 234577788866665554443221 11
Q ss_pred CCcccCCCCCe------eeeeccc-cCCCCceeeEecCCCCCeeEEEeCCC--------cEEEEeCC-CCCCCCcccccc
Q psy4579 108 GGNVQLPNEDA------QFDASNY-DTDKGGYGLSWNPSLNGYLLSASDDH--------TICLWDIN-ATPKENRVIDAK 171 (368)
Q Consensus 108 ~g~i~i~~~~~------~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg--------~v~iwd~~-~~~~~~~~~~~~ 171 (368)
...|.+|+.++ .....+. .+...+..++|+|+| +.|+.++.++ .|++||+. ++... ...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~----~~~ 234 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA----DTR 234 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE----EEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc----ccE
Confidence 25788898876 5555555 667788999999999 8888777553 79999998 34100 122
Q ss_pred eeeeccccceecceeeEEeCCCCCeEEEeeCCC--cEEEEECCCC
Q psy4579 172 TIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH--TICLWDINAT 214 (368)
Q Consensus 172 ~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg--~i~iwd~~~~ 214 (368)
....+|...+. .+.|+|+ +.++++++.++ .|.+||+.++
T Consensus 235 ~l~~~~~~~~~---~~~~spd-g~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 235 TLLGGPEEAIA---QAEWAPD-GSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp EEEEETTBCEE---EEEECTT-SCEEEEECTTSSCEEEEECTTTC
T ss_pred EeCCCCCceEc---ceEECCC-CeEEEEECCCCCeEEEEEECCCC
Confidence 33444566664 9999999 67888888888 5555565443
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.31 E-value=3e-11 Score=106.67 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=77.6
Q ss_pred CCCcccCCCCCeeeeeccccCCC--CceeeEecCCCCC-eeEEEeCCCcEEEEeCCCCCCCCcccccceeeec-c-----
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDK--GGYGLSWNPSLNG-YLLSASDDHTICLWDINATPKENRVIDAKTIFTG-H----- 177 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-h----- 177 (368)
.++.|.+||.............. .+..++|+|++ + +++++..++.|.+||+.+++ ....+.. +
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~i~~~d~~t~~-------~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-RTAYVLNNHYGDIYGIDLDTCK-------NTFHANLSSVPGEV 90 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-SEEEEEETTTTEEEEEETTTTE-------EEEEEESCCSTTEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC-CEEEEEeCCCCcEEEEeCCCCc-------EEEEEEcccccccc
Confidence 47899999986533333222223 68899999998 6 45666678999999998763 2233332 2
Q ss_pred ccceecceeeEEeCCCCCeEEEeeCC------------CcEEEEECCCCCCCCccccceeeeecccccEeEEEEee
Q psy4579 178 TAVVEVRYGLSWNPSLNGYLLSASDD------------HTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241 (368)
Q Consensus 178 ~~~v~~~~~i~~~p~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 241 (368)
...+ .+++|+|+ +.++++++.+ +.|.+||+.++... .....+. +...+.+++|++
T Consensus 91 ~~~~---~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 91 GRSM---YSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp EECS---SCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-CCSSCCCEEECT
T ss_pred cccc---cceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeecc-CCCcccceeECC
Confidence 1224 38999999 8888888865 89999999874211 1223333 233577777864
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.30 E-value=4.4e-10 Score=96.53 Aligned_cols=237 Identities=11% Similarity=0.144 Sum_probs=140.0
Q ss_pred ceeeEecCCcccccCCCCccccccCcceeeeccccCC----CCCcEEEEEEec-CCCccccccCCcccCCCCcccCCCCC
Q psy4579 43 SLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD----EQNHLLIASVQL-PNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
+.+++++|+++.+++.+.++.+.+++.+...-..... .........+.+ +..+..+.+ .+ ..++.|.+|+.+
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~-~~--~~~~~i~~~d~~ 108 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT-ER--SPTHQIQIYNQY 108 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE-EC--GGGCEEEEECTT
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEE-cC--CCCCEEEEECCC
Confidence 5678999999988877777777555432111111000 111122455555 333333322 21 125788999977
Q ss_pred eeeeeccc-cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--ccccceecceeeEEeCCCC
Q psy4579 118 AQFDASNY-DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 118 ~~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~ 194 (368)
++....+. .+...+.+++++|+| +++++...++.|.+||.... ....+. ++...+. +++++|+ +
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~p~---~i~~~~~-g 175 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN--------VLHKFGCSKHLEFPN---GVVVNDK-Q 175 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC--------EEEEEECTTTCSSEE---EEEECSS-S
T ss_pred CcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC--------EEEEeCCCCccCCcE---EEEECCC-C
Confidence 76554432 344678999999998 88888888899999996532 223332 2333343 9999998 7
Q ss_pred CeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc--cccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccc
Q psy4579 195 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH--TAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS 272 (368)
Q Consensus 195 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
.++++.+.++.|++||.... .+..+..+ ......+++++ + ..+|+...
T Consensus 176 ~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~g~~~~p~~i~~d~--------~--G~l~v~~~------------ 225 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYEGQ--------YLRQIGGEGITNYPIGVGINS--------N--GEILIADN------------ 225 (286)
T ss_dssp EEEEEEGGGTEEEEEETTCC--------EEEEESCTTTSCSEEEEEECT--------T--CCEEEEEC------------
T ss_pred CEEEEECCCCEEEEEcCCCC--------EEEEEccCCccCCCcEEEECC--------C--CCEEEEeC------------
Confidence 78888888999999997542 23333322 24556666653 1 13333321
Q ss_pred cccCCCC-CcccccCCCCceeeeeec-CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 273 NYDTDKG-DFGGFGSVSGKIEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 273 ~~d~~~~-~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
..+ .+..++. .++....+.. .....+.+++++|++ .++++ +.|++|++|++..
T Consensus 226 ----~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 226 ----HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ----SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSC
T ss_pred ----CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccc
Confidence 000 2223332 2333333331 122347799999999 67777 5799999999864
No 167
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.29 E-value=7e-11 Score=105.19 Aligned_cols=216 Identities=10% Similarity=0.019 Sum_probs=113.6
Q ss_pred CCCcccCCCCCe---e--eeeccccCCCCceeeEecCCCCCeeEEEe-CCCcEEEEeCCCCCCCCcccccceeeec----
Q psy4579 107 KGGNVQLPNEDA---Q--FDASNYDTDKGGYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTG---- 176 (368)
Q Consensus 107 ~~g~i~i~~~~~---~--~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~---- 176 (368)
.+|.|.+|+.+. . .......+......+++ ++ +.|++++ .++.|.+|++.......... ......+
T Consensus 73 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~g~~~~ 148 (361)
T 3scy_A 73 DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPAS-DVIEFKGSGPD 148 (361)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCS-EEEECCCCCSC
T ss_pred CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccc-eeEEccCCCCC
Confidence 458898887653 2 22223335556777887 66 6555555 68999999997543211100 0001111
Q ss_pred ----cccceecceeeEEeCCCCCeE-EEeeCCCcEEEEECCCCCCCC--ccccc----eeeeecccccEeEEEEeee---
Q psy4579 177 ----HTAVVEVRYGLSWNPSLNGYL-LSASDDHTICLWDINATPKEN--RVIDA----KTIFTGHTAVVEDYSIHRL--- 242 (368)
Q Consensus 177 ----h~~~v~~~~~i~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~--~~~~~----~~~~~~~~~~v~~v~~~~~--- 242 (368)
+...+ .+++|+|+ ++++ +++..++.|.+|++....... +.+.. ......+......++|+|.
T Consensus 149 ~~~~~~~~~---~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 149 KERQTMPHL---HCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp TTTCSSCCE---EEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ccccCCCcc---eEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 11123 27999999 7755 455568999999987643100 00000 0111223344667788751
Q ss_pred cccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCcee--eee--ecCcccceeEEEEeCCCCcEEEE
Q psy4579 243 ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE--IEI--KINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 243 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~--~~~h~~~i~~~~~~p~~~~~las 318 (368)
++.+...++. +.+|+..++... ... ...+......++|+|++..++++
T Consensus 225 l~v~~~~~~~----------------------------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 225 AYLINEIGGT----------------------------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEEETTTCE----------------------------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCCe----------------------------EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 2222212222 222222223221 111 11334456899999999666666
Q ss_pred ecC-CCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 319 KTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 319 gs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
... ++.|.+|++.... +....+..+.. ...+.+++|+|+.
T Consensus 277 ~~~~~~~i~v~~~~~~~------g~~~~~~~~~~-g~~~~~~~~spdg 317 (361)
T 3scy_A 277 NRLKADGVAIFKVDETN------GTLTKVGYQLT-GIHPRNFIITPNG 317 (361)
T ss_dssp ECSSSCEEEEEEECTTT------CCEEEEEEEEC-SSCCCEEEECTTS
T ss_pred CCCCCCEEEEEEEcCCC------CcEEEeeEecC-CCCCceEEECCCC
Confidence 666 6999999996311 11222222333 4467788888864
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.28 E-value=1e-11 Score=110.93 Aligned_cols=156 Identities=13% Similarity=0.189 Sum_probs=91.3
Q ss_pred CceeeEecCCcccccCCCCccccccCcceee-eccccC--C--CCCcEEEEEEecCCCccc-cc-cCC------cccC--
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTD-KGTHTS--D--EQNHLLIASVQLPNEDAQ-FD-ASN------YDTD-- 106 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~~~~i~~~~~~~~~~~-~~-~~~------~~~~-- 106 (368)
++..++|+||+++|++++.+ .+ ..|++. .|.... . .... ...+.+.+++.. +. ... |. .
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v--~~~~~~~~g~~~~~~~~~~~g~--~~~~~~spdg~~l~~~~~~~~~~~~~~-~~~ 114 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KW--SSFAVKSPTEIVHEASHPIGGH--PRANDADTNTRAIFLLAAKQPPYAVYA-NPF 114 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EE--EEEEEEETTEEEEEEEEECCSS--GGGGCTTSCCEEEEEEECSSTTCCEEE-EEE
T ss_pred CCcEEEECCCCCEEEEEccc-eE--EEEEECCCCCEEEeeEeecCCC--CccEEECCCCCEEEEEEecCCcceecc-cee
Confidence 35569999999998887776 55 444443 332210 0 0000 111233333331 11 111 11 0
Q ss_pred --CCCcccCCCCC--eeeeeccc----cCCCCceeeEecCCCCCeeEEEe-CCCcEEEEeCC-CCCCCCcccccceeee-
Q psy4579 107 --KGGNVQLPNED--AQFDASNY----DTDKGGYGLSWNPSLNGYLLSAS-DDHTICLWDIN-ATPKENRVIDAKTIFT- 175 (368)
Q Consensus 107 --~~g~i~i~~~~--~~~~~~~~----~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~-~~~~~~~~~~~~~~~~- 175 (368)
.+|.+.+|+.+ ++...... .+...+.+++|+|+| ++|+++. .++.|++||+. +++. .....+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~-----~~~~~~~~ 188 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEV-----ELVGSVDA 188 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCE-----EEEEEEEC
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCE-----EEeeeEec
Confidence 47888898864 33322221 355679999999999 7777665 46899999997 4431 1122232
Q ss_pred -ccccceecceeeEEeCCCCCeEEEeeC-CCcEEEEECCC
Q psy4579 176 -GHTAVVEVRYGLSWNPSLNGYLLSASD-DHTICLWDINA 213 (368)
Q Consensus 176 -~h~~~v~~~~~i~~~p~~~~~l~s~s~-dg~i~iwd~~~ 213 (368)
.|...++ .++|+|+ ++++++++. ++.|.+|++..
T Consensus 189 ~~~g~~p~---~~~~spd-g~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 189 PDPGDHPR---WVAMHPT-GNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp SSTTCCEE---EEEECTT-SSEEEEEETTTTEEEEEEECT
T ss_pred CCCCCCCC---EeEECCC-CCEEEEEECCCCeEEEEEEeC
Confidence 2334454 8999999 877777664 78999998753
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=4.4e-11 Score=107.61 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=84.3
Q ss_pred ceeeEecCCcccccCCCC-ccccccCcceeeeccccCC-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee
Q psy4579 43 SLTAQWLPDVTSVQLPNE-DAQFDASNYDTDKGTHTSD-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF 120 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~ 120 (368)
+.+++|+|||++|++... ++...++.++...+..... ...........|.+++..+... ..++.+.+|+.++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~----~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV----KNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE----ETTTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE----EcCCcEEEEECCCCC
Confidence 567899999999887643 3433446555554432111 1110001112333333333221 124568888876533
Q ss_pred eecccc-CCCCcee-------------------eEecCCCCCeeEEE-----eCCCcEEEEeCCCCCCCCcccccceeee
Q psy4579 121 DASNYD-TDKGGYG-------------------LSWNPSLNGYLLSA-----SDDHTICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 121 ~~~~~~-h~~~v~~-------------------l~~sp~~~~~lasg-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
...+.. +...... +.|+|++ +.++.+ ..+..|.+||+.++. ...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~~~ 184 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGE--------LEVIH 184 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCC--------EEEEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCc--------EEeec
Confidence 222222 2222222 4678887 666544 456789999998763 23333
Q ss_pred ccccceecceeeEEeC-CCCCeEEEeeCC------CcEEEEECCCC
Q psy4579 176 GHTAVVEVRYGLSWNP-SLNGYLLSASDD------HTICLWDINAT 214 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p-~~~~~l~s~s~d------g~i~iwd~~~~ 214 (368)
.+...+. .+.|+| + +..|+..+.+ ..|.+||+..+
T Consensus 185 ~~~~~~~---~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 185 QDTAWLG---HPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp EESSCEE---EEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred cCCcccc---cceECCCC-CCEEEEEecCCCCCCCceEEEEECCCC
Confidence 4555564 899999 5 6666665543 36888888654
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.13 E-value=3.7e-10 Score=110.41 Aligned_cols=235 Identities=13% Similarity=0.022 Sum_probs=127.8
Q ss_pred CCcccCCCCCeeee-eccccCCCC-----ceeeEecCCCCCeeEEEeCC---------CcEEEEeCCCCCCCCcccccce
Q psy4579 108 GGNVQLPNEDAQFD-ASNYDTDKG-----GYGLSWNPSLNGYLLSASDD---------HTICLWDINATPKENRVIDAKT 172 (368)
Q Consensus 108 ~g~i~i~~~~~~~~-~~~~~h~~~-----v~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~~~~~~~~ 172 (368)
+|.|++|+..+... ..+.+|... ...++|||+| +.|+.++.+ +.+.+||+.++. ..
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~--------~~ 105 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ--------LI 105 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE--------EC
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc--------EE
Confidence 78999999865332 233344432 2347889999 889888876 566799999874 23
Q ss_pred eeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccc--cceeeeecccccE---------eEEEEee
Q psy4579 173 IFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI--DAKTIFTGHTAVV---------EDYSIHR 241 (368)
Q Consensus 173 ~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~v---------~~v~~~~ 241 (368)
.+..|...+. ..+|||+ ++.||.+ .|+.|.+||+.++....-.. .....+.++...| ..+.|+|
T Consensus 106 ~l~~~~~~~~---~~~~SPd-G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp 180 (740)
T 4a5s_A 106 TEERIPNNTQ---WVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP 180 (740)
T ss_dssp CSSCCCTTEE---EEEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred EcccCCCcce---eeEECCC-CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence 4556666674 9999999 8888887 47899999998764210000 0000112222111 2367775
Q ss_pred --ecccccC-CCCccceEEEEeecCCc-c-cccccccc-----cCCCCCcccccCCC---Cc--eeeeeec-----Cccc
Q psy4579 242 --LILGTHT-SDEQNHLLIASVQLPNE-D-AQFDASNY-----DTDKGDFGGFGSVS---GK--IEIEIKI-----NHEG 301 (368)
Q Consensus 242 --~~~~~~~-~d~~~~~~~~~~~~~~~-~-~~~~~~~~-----d~~~~~~~~~~~~~---~~--~~~~~~~-----~h~~ 301 (368)
..++... .+..+.+|......... . .......| ......+.++++.+ ++ ....+.. +|..
T Consensus 181 Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (740)
T 4a5s_A 181 NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH 260 (740)
T ss_dssp TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE
T ss_pred CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe
Confidence 1122211 12223333322111100 0 00000000 01112355666666 52 1222221 3778
Q ss_pred ceeEEEEeCCCCcEEEEe----cCCCeEEEEECCCCCCCCCCCCC----CCCceee--ecccCcee-----eecceeee
Q psy4579 302 EVNRARYMPQNPCVIATK----TPSSDVLVFDYTKHPSKPDPNGE----CHPDLRL--RGHQKEGL-----IEGTYNCY 365 (368)
Q Consensus 302 ~i~~~~~~p~~~~~lasg----s~Dg~i~iwd~~~~~~~~~~~~~----~~~~~~~--~gh~~~V~-----~l~w~p~~ 365 (368)
.+..++|+|++. +++.. +.+..|.+||+.. ++ +..+..+ .+|...|. ..+|+|+.
T Consensus 261 ~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~t--------g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 261 YLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDE--------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp EEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEET--------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred EEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCC--------CccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 899999999994 44443 3345799999975 22 2222233 45665554 67888864
No 171
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=4.7e-10 Score=108.88 Aligned_cols=246 Identities=11% Similarity=-0.008 Sum_probs=136.8
Q ss_pred ccCceeeEecCCccccc-----CCCCccccccCcceeeecccc-CCCCCcEEEEEEecCCCccccccCCcccC-------
Q psy4579 40 EWPSLTAQWLPDVTSVQ-----LPNEDAQFDASNYDTDKGTHT-SDEQNHLLIASVQLPNEDAQFDASNYDTD------- 106 (368)
Q Consensus 40 ~~~~~~~~~~p~~~~l~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------- 106 (368)
.+.+.++.|+|||++|| .|+++..+ +.+++..|... .+.........+.|.+++..+....++..
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i--~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVL--HVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEE--EEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEE--EEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 45678899999999999 56555566 55566655543 22111000134556555554443333211
Q ss_pred --CCCcccCCCCCee-----eeeccccCCCCceeeEecCCCCCeeEEEeCCC----cEEEEeCCCCCCCCcccccceeee
Q psy4579 107 --KGGNVQLPNEDAQ-----FDASNYDTDKGGYGLSWNPSLNGYLLSASDDH----TICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 107 --~~g~i~i~~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
....|.+|++.+. .+.....|...+.++.|+|+| ++|+.++.++ .|.+++..++ ....+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~--------~~~~l~ 268 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEK--------DFRLLV 268 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCS--------SCEEEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCC--------ceEEee
Confidence 1223778887642 233334466788999999999 7777777665 5666654433 234455
Q ss_pred ccccceecceeeEEeCCCCCeEEEee---CCCcEEEEECCCCCCCCccccceeeeecc-cccEeEEEEee-ecccccCCC
Q psy4579 176 GHTAVVEVRYGLSWNPSLNGYLLSAS---DDHTICLWDINATPKENRVIDAKTIFTGH-TAVVEDYSIHR-LILGTHTSD 250 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~~-~~~~~~~~d 250 (368)
.+...+. ...| ++ +.++++.. .++.|.+||+.++... .....+..+ ...+..+++.. .++.+...+
T Consensus 269 ~~~~~~~---~~~~-~~-g~l~~~s~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d 339 (695)
T 2bkl_A 269 KGVGAKY---EVHA-WK-DRFYVLTDEGAPRQRVFEVDPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339 (695)
T ss_dssp ECSSCCE---EEEE-ET-TEEEEEECTTCTTCEEEEEBTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEET
T ss_pred cCCCceE---EEEe-cC-CcEEEEECCCCCCCEEEEEeCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEEC
Confidence 5555443 5556 45 33555554 2578999998775310 011222222 34566666652 233333444
Q ss_pred CccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEe---cCCCeEEE
Q psy4579 251 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATK---TPSSDVLV 327 (368)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasg---s~Dg~i~i 327 (368)
+..++++... .++....+...+.+.|..+.++|+++.++++. ...++|++
T Consensus 340 g~~~l~~~~~---------------------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 340 ATSEVRVATL---------------------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp TEEEEEEEET---------------------------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEeC---------------------------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 4444443321 12222222222356778888999885555443 34578999
Q ss_pred EECCC
Q psy4579 328 FDYTK 332 (368)
Q Consensus 328 wd~~~ 332 (368)
||+..
T Consensus 393 ~d~~~ 397 (695)
T 2bkl_A 393 TSVST 397 (695)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99864
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.11 E-value=9.1e-10 Score=98.26 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=70.7
Q ss_pred cccCCCCC--eeeeeccccC--CCCceeeEecCCCCC--eeEEEe-------------CCCcEEEEeCCCCCCCCccccc
Q psy4579 110 NVQLPNED--AQFDASNYDT--DKGGYGLSWNPSLNG--YLLSAS-------------DDHTICLWDINATPKENRVIDA 170 (368)
Q Consensus 110 ~i~i~~~~--~~~~~~~~~h--~~~v~~l~~sp~~~~--~lasg~-------------~dg~v~iwd~~~~~~~~~~~~~ 170 (368)
.|.+|+.+ ++... ...+ .+.+.+++|+|+| + +++++. .+|++.+|++..... .
T Consensus 61 ~v~~~~~~~~g~~~~-~~~~~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~------~ 132 (365)
T 1jof_A 61 KWSSFAVKSPTEIVH-EASHPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK------L 132 (365)
T ss_dssp EEEEEEEEETTEEEE-EEEEECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC------E
T ss_pred eEEEEEECCCCCEEE-eeEeecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCc------C
Confidence 78889874 33322 1112 1347789999999 7 355653 689999999974221 1
Q ss_pred ceeee----ccccceecceeeEEeCCCCCeEEEee-CCCcEEEEECC-CCCCCCccccceeeee--cccccEeEEEEee
Q psy4579 171 KTIFT----GHTAVVEVRYGLSWNPSLNGYLLSAS-DDHTICLWDIN-ATPKENRVIDAKTIFT--GHTAVVEDYSIHR 241 (368)
Q Consensus 171 ~~~~~----~h~~~v~~~~~i~~~p~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~--~~~~~v~~v~~~~ 241 (368)
...+. .+...+. +++|+|+ ++++++++ .++.|.+||+. ++.. .....+. .|...+..++|+|
T Consensus 133 ~~~~~~~~~~~~~~~~---~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~-----~~~~~~~~~~~g~~p~~~~~sp 202 (365)
T 1jof_A 133 EKNVQNYEYQENTGIH---GMVFDPT-ETYLYSADLTANKLWTHRKLASGEV-----ELVGSVDAPDPGDHPRWVAMHP 202 (365)
T ss_dssp EEEEEEEECCTTCCEE---EEEECTT-SSEEEEEETTTTEEEEEEECTTSCE-----EEEEEEECSSTTCCEEEEEECT
T ss_pred cceEeeEEeCCCCcce---EEEECCC-CCEEEEEcCCCCEEEEEEECCCCCE-----EEeeeEecCCCCCCCCEeEECC
Confidence 11222 2334453 9999999 77777665 46899999997 4421 1122232 2345677888875
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.11 E-value=8.7e-09 Score=90.42 Aligned_cols=241 Identities=10% Similarity=0.073 Sum_probs=128.6
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeee
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFD 121 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~ 121 (368)
++.++.|+|++..++..+.++.+..|. ...-..... ....+..+.+.+++. +.... ..++.|.+|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~g~-l~~~~---~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--AEPWLEISK--KGLQLEGLNFDRQGQ-LFLLD---VFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--CEEEEEEES--SCCCEEEEEECTTSC-EEEEE---TTTCEEEEECTTTCCE
T ss_pred ccceeeecCCccceeEEeecccCcccc--cceeEEEec--cCccccCcEECCCCC-EEEEE---CCCCEEEEEeCCCCcE
Confidence 456788999998888777777775541 111000011 111234555644433 22221 2467899999875433
Q ss_pred ecc-ccCCCCceeeEecCCCCCeeEEEeCC----CcEEEEeCCCCCCCCcccccceeee--ccccceecceeeEEeCCCC
Q psy4579 122 ASN-YDTDKGGYGLSWNPSLNGYLLSASDD----HTICLWDINATPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 122 ~~~-~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~ 194 (368)
... ..+...+.+++++|+| +++++...+ +.|.+||..++.. ...+. .+...+. ++++.|+ +
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~---~i~~d~~-g 146 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL-------QDIIEDLSTAYCID---DMVFDSK-G 146 (333)
T ss_dssp EEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC-------EEEECSSSSCCCEE---EEEECTT-S
T ss_pred EEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEE-------EEEEccCccCCccc---ceEECCC-C
Confidence 332 2566789999999998 777777666 6899999876532 11221 2233453 8999998 7
Q ss_pred CeEEEeeC------CCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccc
Q psy4579 195 GYLLSASD------DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ 268 (368)
Q Consensus 195 ~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 268 (368)
.++++... .+.|..+|..++. ...+.......+.++|++. ...+++.... ..
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~i~~~~d---------g~~l~v~~~~----~~- 204 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRT--------VTPIIQNISVANGIALSTD---------EKVLWVTETT----AN- 204 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCC--------EEEEEEEESSEEEEEECTT---------SSEEEEEEGG----GT-
T ss_pred CEEEEeccccccCCCceEEEEeCCCCE--------EEEeecCCCcccceEECCC---------CCEEEEEeCC----CC-
Confidence 77776654 3456666654431 1222222234566777541 0112221100 00
Q ss_pred cccccccCCC-CC-cccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 269 FDASNYDTDK-GD-FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 269 ~~~~~~d~~~-~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.+..+|... +. +..+ ......... ++ ..+..+++++++ +++++...++.|.+||..
T Consensus 205 -~i~~~d~~~~g~~~~~~---~~~~~~~~~-~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 205 -RLHRIALEDDGVTIQPF---GATIPYYFT-GH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -EEEEEEECTTSSSEEEE---EEEEEEECC-SS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT
T ss_pred -eEEEEEecCCCcCcccc---cceEEEecC-CC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC
Confidence 001111110 00 0000 000000111 22 467889999999 577676778999999974
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.10 E-value=5.1e-10 Score=98.90 Aligned_cols=215 Identities=8% Similarity=0.061 Sum_probs=115.5
Q ss_pred EEEEecCCCccccccCCccc-CCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCC--------------
Q psy4579 86 IASVQLPNEDAQFDASNYDT-DKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDD-------------- 150 (368)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~-~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-------------- 150 (368)
+....|.+++..+....... .+...|.+|+.++.....+..+.. +.+++|+|+| +.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccc
Confidence 44556665554444332211 012246667766544444444444 9999999999 777777632
Q ss_pred -------------CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC-------cEEEEE
Q psy4579 151 -------------HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH-------TICLWD 210 (368)
Q Consensus 151 -------------g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg-------~i~iwd 210 (368)
..|.+||+.++. ....+.. . .+. .+.|+|+ + ++++++.++ ...||.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~-------~~~~l~~-~-~~~---~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEE-------VIEEFEK-P-RFS---SGIWHRD-K-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp CC---------CEEEEEEEETTTTE-------EEEEEEE-E-TTC---EEEEETT-E-EEEEEECCCSSCCSSCCEEEEE
T ss_pred eeecCcccccCccceEEEEECCCCe-------EEeeecC-C-Ccc---cccCCCC-e-EEEEEecccccccccccccEEE
Confidence 568889987753 2133333 2 453 8999998 6 777776542 345554
Q ss_pred CCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCc
Q psy4579 211 INATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK 290 (368)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 290 (368)
+.++. ...+..+ ..+..+ +| |+. .+...... .... ......+..++ +++
T Consensus 205 ~d~~~--------~~~l~~~-~~~~~~--sp--------dg~-~l~~~~~~--~~~~-------~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 205 WEDGK--------EEKMFEK-VSFYAV--DS--------DGE-RILLYGKP--EKKY-------MSEHNKLYIYD--GKE 253 (347)
T ss_dssp EETTE--------EEEEEEE-ESEEEE--EE--------CSS-CEEEEECC--SSSC-------CCSSCEEEEEC--SSC
T ss_pred eCCCc--------eEEeccC-cceeeE--CC--------CCC-EEEEEEcc--ccCC-------ccccceEEEEC--CCc
Confidence 44321 1222222 222222 22 111 12111110 0000 00112233334 233
Q ss_pred eeeeeecCcccceeE-EEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeeccee
Q psy4579 291 IEIEIKINHEGEVNR-ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYN 363 (368)
Q Consensus 291 ~~~~~~~~h~~~i~~-~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p 363 (368)
. ..+...|...+.. +.|+ ++ ++++++.|+.++|| +.. + . ...+..+...|.+++|+|
T Consensus 254 ~-~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~--------g--~-~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 254 V-MGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD--------G--E-IKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp E-EESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES--------S--S-EEEEECSSSEEEEEEESS
T ss_pred e-EeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC--------C--c-eEEEecCCCeEEeeeeeC
Confidence 2 2233356777886 8998 76 77788999999999 862 1 1 123445677888999987
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=1.7e-09 Score=105.25 Aligned_cols=248 Identities=10% Similarity=-0.016 Sum_probs=138.5
Q ss_pred cCceeeEecCCcccccCCCCccc---cccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccC-----------
Q psy4579 41 WPSLTAQWLPDVTSVQLPNEDAQ---FDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD----------- 106 (368)
Q Consensus 41 ~~~~~~~~~p~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------- 106 (368)
+.+..++|+|||++|++++.++. ..++.+++..|...........+..+.|.+++..+.....+..
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 45678999999999997654331 1335556555543221000111234556555444433322211
Q ss_pred -CCCcccCCCCCeee-----eeccccCCCCceeeEecCCCCCeeEEEeC-----CCcEEEEeCCC------CCCCCcccc
Q psy4579 107 -KGGNVQLPNEDAQF-----DASNYDTDKGGYGLSWNPSLNGYLLSASD-----DHTICLWDINA------TPKENRVID 169 (368)
Q Consensus 107 -~~g~i~i~~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~~lasg~~-----dg~v~iwd~~~------~~~~~~~~~ 169 (368)
....|.+|++.+.. +.....|...+..+.|+|+| ++|+.++. +..|.+||+.+ +..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------ 277 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------ 277 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC------
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc------
Confidence 12237777775422 22233355667899999999 77777664 56899999976 321
Q ss_pred cceeeeccccceecceeeEEeCCCCCeEEEeeCC----CcEEEEECCCCCCCCccccceeeeecccc--cEeEEEEee--
Q psy4579 170 AKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD----HTICLWDINATPKENRVIDAKTIFTGHTA--VVEDYSIHR-- 241 (368)
Q Consensus 170 ~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~~-- 241 (368)
....+..+...+ .-.|+|+ +..|+..+.+ +.|.+||+.++... ....+..|.. .+..++|.+
T Consensus 278 ~~~~l~~~~~~~----~~~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 278 KWVKLIDNFEGE----YDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES-----KWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp CCEEEECSSSSC----EEEEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG-----GCEEEECCCSSCEEEEEEEETTT
T ss_pred ceEEeeCCCCcE----EEEEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc-----cceeccCCCCCCeEEEEEEEcCC
Confidence 235566666655 2358888 6655554442 36999998775310 1133333433 566777752
Q ss_pred ecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEec-
Q psy4579 242 LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKT- 320 (368)
Q Consensus 242 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs- 320 (368)
.++.+...++..++++ ++..+++....+. .+.+.|..+.++|++..++++.+
T Consensus 348 ~lv~~~~~~g~~~l~~--------------------------~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQL--------------------------HDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp EEEEEEEETTEEEEEE--------------------------EETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEEC
T ss_pred EEEEEEEECCEEEEEE--------------------------EECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeC
Confidence 2222222222223322 2222344333333 45778889999999865654433
Q ss_pred --CCCeEEEEECCC
Q psy4579 321 --PSSDVLVFDYTK 332 (368)
Q Consensus 321 --~Dg~i~iwd~~~ 332 (368)
..++|++||+..
T Consensus 401 ~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 401 FLSPGIIYHCDLTK 414 (710)
T ss_dssp SSCCCEEEEEETTS
T ss_pred CCCCCEEEEEECCC
Confidence 458899999865
No 176
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.07 E-value=8.3e-09 Score=87.57 Aligned_cols=236 Identities=5% Similarity=-0.043 Sum_probs=131.2
Q ss_pred ceeeEecCCccccc-CCCCccccccCcceeeeccccC-CCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeee
Q psy4579 43 SLTAQWLPDVTSVQ-LPNEDAQFDASNYDTDKGTHTS-DEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQF 120 (368)
Q Consensus 43 ~~~~~~~p~~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~ 120 (368)
...+.+.|+++.++ ..+.++.+.. ++...+.... .......+..+.+.+++. +..+. .++.|..|+.++..
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~----~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVK--LATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTD----FNNRVVTLAAGSNN 98 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEE--ECC-----EECCCCSCCSCCCEEECTTCC-EEEEE----TTTEEEEECTTCSC
T ss_pred ccceEECCCCCEEEEccCCCCcEEE--ecCCCcccceEeeCCcCCcceeEECCCCC-EEEEc----CCCEEEEEeCCCce
Confidence 44689999999776 5466666633 3332221111 011111122333433322 22221 25678888877654
Q ss_pred eeccc-cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEE
Q psy4579 121 DASNY-DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLS 199 (368)
Q Consensus 121 ~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s 199 (368)
..... .....+.+++++|+| +++++...++.|.+|+..+... ..........+ .++++.|+ +.++++
T Consensus 99 ~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p---~~i~~~~~-g~l~v~ 166 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ-------TVLPFTGLNDP---DGVAVDNS-GNVYVT 166 (270)
T ss_dssp CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSC-------EECCCCSCCSC---CCEEECTT-CCEEEE
T ss_pred EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCcee-------EeeccccCCCc---eeEEEeCC-CCEEEE
Confidence 33322 233578999999998 7888877889999997554321 11111222233 38999998 777777
Q ss_pred eeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCC
Q psy4579 200 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKG 279 (368)
Q Consensus 200 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 279 (368)
...++.|.+||...... ......+......+++++ + ..+|+... ..+
T Consensus 167 ~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~d~--------~--g~l~v~~~----------------~~~ 213 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQ-------VVLPFTDITAPWGIAVDE--------A--GTVYVTEH----------------NTN 213 (270)
T ss_dssp EGGGTEEEEECTTTCCE-------EECCCSSCCSEEEEEECT--------T--CCEEEEET----------------TTS
T ss_pred ECCCCEEEEEecCCCce-------EeecccCCCCceEEEECC--------C--CCEEEEEC----------------CCC
Confidence 77788999999876521 111111223455666653 1 13444331 011
Q ss_pred CcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 280 DFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+..++....... .....+...+.+++++|+| .++++.+.++.|+++++..
T Consensus 214 ~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 214 QVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CEEEECTTCSCCE-ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCG
T ss_pred cEEEEcCCCCcce-eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCC
Confidence 1222222222111 1221344578999999999 6888889999999999864
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.04 E-value=3.5e-08 Score=84.55 Aligned_cols=198 Identities=9% Similarity=0.059 Sum_probs=116.9
Q ss_pred CCCcccCCCCCeeeeeccc------cCCCCceeeEe-cCCCCCeeEEEeC-CCcEEEEeCCCCCCCCcccccceeee-cc
Q psy4579 107 KGGNVQLPNEDAQFDASNY------DTDKGGYGLSW-NPSLNGYLLSASD-DHTICLWDINATPKENRVIDAKTIFT-GH 177 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~------~h~~~v~~l~~-sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~-~h 177 (368)
.++.|.+|+.+++....+. +|...+.++++ .+++ .++++... ++.|++||.. +. ....+. .+
T Consensus 49 ~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~-g~-------~~~~~~~~~ 119 (286)
T 1q7f_A 49 NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQY-GQ-------FVRKFGATI 119 (286)
T ss_dssp GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTT-SC-------EEEEECTTT
T ss_pred CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCC-Cc-------EEEEecCcc
Confidence 3678999998765544332 24457889999 4666 66666643 8999999943 32 223332 22
Q ss_pred ccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeee--cccccEeEEEEeeecccccCCCCccce
Q psy4579 178 TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEDYSIHRLILGTHTSDEQNHL 255 (368)
Q Consensus 178 ~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~d~~~~~ 255 (368)
...+. ++++.|+ +.++++...++.|.+||.... ....+. ++...+..+++++. ..+
T Consensus 120 ~~~~~---~i~~~~~-g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~p~~i~~~~~----------g~l 177 (286)
T 1q7f_A 120 LQHPR---GVTVDNK-GRIIVVECKVMRVIIFDQNGN--------VLHKFGCSKHLEFPNGVVVNDK----------QEI 177 (286)
T ss_dssp CSCEE---EEEECTT-SCEEEEETTTTEEEEECTTSC--------EEEEEECTTTCSSEEEEEECSS----------SEE
T ss_pred CCCce---EEEEeCC-CCEEEEECCCCEEEEEcCCCC--------EEEEeCCCCccCCcEEEEECCC----------CCE
Confidence 23343 9999998 788888888899999996532 123332 23345677777641 123
Q ss_pred EEEEeecCCcccccccccccCCCCCcccccCCCCceeeeee-cCcccceeEEEEeCCCCcEEEEecCCC-eEEEEECCCC
Q psy4579 256 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKTPSS-DVLVFDYTKH 333 (368)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~lasgs~Dg-~i~iwd~~~~ 333 (368)
|+... ..+.+..++. .++....+. .++...+..++++|++ +++++...++ .|.+||...
T Consensus 178 ~v~~~----------------~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g- 238 (286)
T 1q7f_A 178 FISDN----------------RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDG- 238 (286)
T ss_dssp EEEEG----------------GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTS-
T ss_pred EEEEC----------------CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCC-
Confidence 33221 0111222222 122222222 1234578899999999 6877877775 999999642
Q ss_pred CCCCCCCCCCCCceeeeccc--Cceeeecceee
Q psy4579 334 PSKPDPNGECHPDLRLRGHQ--KEGLIEGTYNC 364 (368)
Q Consensus 334 ~~~~~~~~~~~~~~~~~gh~--~~V~~l~w~p~ 364 (368)
..+..+..+. ..+.+++++|+
T Consensus 239 ----------~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 239 ----------QLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp ----------CEEEEEEESSCCSCEEEEEEETT
T ss_pred ----------CEEEEEcccCCCCcceeEEECCC
Confidence 2233343332 24668888775
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.03 E-value=8.3e-09 Score=91.85 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=64.6
Q ss_pred CCcccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEe----------CCCcEEEEeCCCCCCCCcccccceeeec
Q psy4579 108 GGNVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSAS----------DDHTICLWDINATPKENRVIDAKTIFTG 176 (368)
Q Consensus 108 ~g~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 176 (368)
|+.|.+||... +....+..+..+ .++|+|++ +++.+++ .+++|.+||..+.+ ....+..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------~~~~i~~ 99 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLT-------FEKEISL 99 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCC-------EEEEEEE
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCc-------EEEEEEc
Confidence 67788888643 333333334444 89999999 8777775 36789999998754 2333332
Q ss_pred c------ccceecceeeEEeCCCCCeEEEeeC--CCcEEEEECCCCC
Q psy4579 177 H------TAVVEVRYGLSWNPSLNGYLLSASD--DHTICLWDINATP 215 (368)
Q Consensus 177 h------~~~v~~~~~i~~~p~~~~~l~s~s~--dg~i~iwd~~~~~ 215 (368)
. .... ..++++|+ +++|++++. +++|.+||+.++.
T Consensus 100 ~~~~~~~g~~p---~~i~~spd-g~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 100 PPKRVQGLNYD---GLFRQTTD-GKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CTTBCCBCCCG---GGEEECTT-SSEEEEEEESSSEEEEEEETTTTE
T ss_pred CccccccCCCc---ceEEECCC-CCEEEEECCCCCCeEEEEECCCCc
Confidence 1 1223 28999999 888888764 6899999998763
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.02 E-value=7.8e-09 Score=100.60 Aligned_cols=230 Identities=5% Similarity=-0.073 Sum_probs=127.5
Q ss_pred EEEEEEecCCCccccccCCcc-cCCCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCc----------
Q psy4579 84 LLIASVQLPNEDAQFDASNYD-TDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHT---------- 152 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~-~~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~---------- 152 (368)
..+..+.|++++..+...... .+....|++|++.+............+..++|+|+| +.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCccccccccccc
Confidence 467777887665544332211 111137999998764333222222237889999999 88888887766
Q ss_pred ------EEEEeCCCCCCCCcccccceeeec--cccceecceeeEEeCCCCCeEEEeeC-----CCcEEEEECCC------
Q psy4579 153 ------ICLWDINATPKENRVIDAKTIFTG--HTAVVEVRYGLSWNPSLNGYLLSASD-----DHTICLWDINA------ 213 (368)
Q Consensus 153 ------v~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~i~~~p~~~~~l~s~s~-----dg~i~iwd~~~------ 213 (368)
|++|++.++... ....+.. |...+ ..+.|+|+ +.+|+.++. +..|.+||+.+
T Consensus 204 ~~~~~~v~~~~l~t~~~~-----~~~v~~~~~~~~~~---~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWM---GGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp CCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCE---EEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred cCCCCEEEEEECCCCccc-----ceEEeccCCCCeEE---EEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999776421 1122232 34434 38999999 787777654 56899999876
Q ss_pred CCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce--
Q psy4579 214 TPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI-- 291 (368)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-- 291 (368)
+.. ....+..+...+.. .|.+. + ..+++.+. .+...+.+..++..++..
T Consensus 275 ~~~------~~~~l~~~~~~~~~-~~s~d--------g-~~l~~~s~-------------~~~~~~~l~~~d~~~~~~~~ 325 (710)
T 2xdw_A 275 GIL------KWVKLIDNFEGEYD-YVTNE--------G-TVFTFKTN-------------RHSPNYRLINIDFTDPEESK 325 (710)
T ss_dssp SSC------CCEEEECSSSSCEE-EEEEE--------T-TEEEEEEC-------------TTCTTCEEEEEETTSCCGGG
T ss_pred Ccc------ceEEeeCCCCcEEE-EEecc--------C-CEEEEEEC-------------CCCCCCEEEEEeCCCCCccc
Confidence 311 12334444444433 23320 0 11111110 011112233333333321
Q ss_pred eeeeecCccc--ceeEEEEeCCCCcEEEEecCCCeEE--EEECCCCCCCCCCCCCCCCceeeecccCceeeecceee
Q psy4579 292 EIEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVL--VFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 292 ~~~~~~~h~~--~i~~~~~~p~~~~~lasgs~Dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~ 364 (368)
...+. .|.. .+..++|++++ .++++...|+..+ +||+.. ...+..+..+.+.|.+++++|.
T Consensus 326 ~~~l~-~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~----------g~~~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 326 WKVLV-PEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT----------GALLKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp CEEEE-CCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT----------CCEEEEECCCSSEEEEEECCTT
T ss_pred ceecc-CCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC----------CCEEEecCCCCceEEEEecCCC
Confidence 12222 3433 67889999776 7888989998654 556532 2223345566777788888764
No 180
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.02 E-value=2.8e-09 Score=94.82 Aligned_cols=175 Identities=10% Similarity=0.023 Sum_probs=111.1
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC----CCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCc
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPK----ENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~ 205 (368)
.++.|++++.. .++++|+.++. .+|++..... .....++.... .+.. |. .++| + +..|+++ .++.
T Consensus 39 ~~nlLais~~~-gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~---~l~f--d-~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEK-EIPD-VI---FVCF--H-GDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EE---EEEE--E-TTEEEEE-ESSE
T ss_pred cccEEEEcCCC-CEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEe-eCCC-ee---EEEE--C-CCEEEEE-cCCc
Confidence 68999999998 89999998855 4598764320 00001122222 3555 74 9999 5 8889888 8899
Q ss_pred EEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCccccc
Q psy4579 206 ICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG 285 (368)
Q Consensus 206 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 285 (368)
|++||+++... ......|...+.++.+.+.-++.... .|.+.+|+
T Consensus 108 l~v~dv~sl~~-------~~~~~~~~~~v~~i~~~~p~~av~~~----------------------------dG~L~v~d 152 (388)
T 1xip_A 108 LYSLDLEELSE-------FRTVTSFEKPVFQLKNVNNTLVILNS----------------------------VNDLSALD 152 (388)
T ss_dssp EEEEESSSTTC-------EEEEEECSSCEEEEEECSSEEEEEET----------------------------TSEEEEEE
T ss_pred EEEEEchhhhc-------cCccceeecceeeEEecCCCEEEEEC----------------------------CCCEEEEE
Confidence 99999987632 23344456667666554211222222 23344444
Q ss_pred CCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceee------e---cccCce
Q psy4579 286 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL------R---GHQKEG 356 (368)
Q Consensus 286 ~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~---gh~~~V 356 (368)
+..+... .+...|+|++|+|+| ++.|..||++++|+..... ..+...+ . +|...|
T Consensus 153 l~~~~~~-----~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~--------~~~k~~I~~Pp~~~~~~~~~~~V 216 (388)
T 1xip_A 153 LRTKSTK-----QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGE--------MEKQFEFSLPSELEELPVEEYSP 216 (388)
T ss_dssp TTTCCEE-----EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTE--------EEEEEEECCCHHHHTSCTTTSEE
T ss_pred ccCCccc-----cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcc--------ccccceecCCcccccccCCCeeE
Confidence 4444432 145689999999999 4567899999999886421 1001122 2 478899
Q ss_pred eeecceeeee
Q psy4579 357 LIEGTYNCYL 366 (368)
Q Consensus 357 ~~l~w~p~~~ 366 (368)
.++.|.+++.
T Consensus 217 ~sI~wl~~~~ 226 (388)
T 1xip_A 217 LSVTILSPQD 226 (388)
T ss_dssp EEEEESSSSE
T ss_pred EEEEEecCCe
Confidence 9999998763
No 181
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.01 E-value=3.4e-09 Score=103.61 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=135.6
Q ss_pred cCceeeEecCCcccccCCCCc-cc--cccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccC----------C
Q psy4579 41 WPSLTAQWLPDVTSVQLPNED-AQ--FDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD----------K 107 (368)
Q Consensus 41 ~~~~~~~~~p~~~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~ 107 (368)
+.+..+.|+|||++|++++.+ |. ..++.+++..|...........+..+.|.++ ..+....++.. .
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 567789999999999987554 22 3346666665543221000011134455444 43333322211 1
Q ss_pred CCcccCCCCCee-----eeeccccCCCCceeeEecCCCCCeeEEEeCCC-----cEEEEeCCCCCCCCcccccceeeecc
Q psy4579 108 GGNVQLPNEDAQ-----FDASNYDTDKGGYGLSWNPSLNGYLLSASDDH-----TICLWDINATPKENRVIDAKTIFTGH 177 (368)
Q Consensus 108 ~g~i~i~~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~h 177 (368)
...|.+|++.+. .+.....+...+..+.|+|+| ++|+..+.++ .|++||+.++... ....+..+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~ 315 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG-----PVTALIPD 315 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC-----CCEEEECS
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc-----ccEEecCC
Confidence 234667776432 222223344468899999999 8777776544 7999999765210 12445555
Q ss_pred ccceecceeeEEeCCCCCeEEEeeC----CCcEEEEECCCCCCCCccccceeeeecccccEeEEEEee-ecccccCCCCc
Q psy4579 178 TAVVEVRYGLSWNPSLNGYLLSASD----DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR-LILGTHTSDEQ 252 (368)
Q Consensus 178 ~~~v~~~~~i~~~p~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~d~~ 252 (368)
..... .. +.|+ ++.|+..+. ++.|.+||+.++. . .....+..+...+..+++.. .++.+...++.
T Consensus 316 ~~~~~---~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~--~---~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 316 LKAQW---DF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGST--P---RFDTVVPESKDNLESVGIAGNRLFASYIHDAK 385 (741)
T ss_dssp SSSCE---EE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSS--C---EEEEEECCCSSEEEEEEEEBTEEEEEEEETTE
T ss_pred CCceE---EE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCc--c---ccEEEecCCCCeEEEEEEECCEEEEEEEECCE
Confidence 54442 33 3477 676666665 3459999987642 0 11223334444555666642 23333333333
Q ss_pred cceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEe---cCCCeEEEEE
Q psy4579 253 NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATK---TPSSDVLVFD 329 (368)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasg---s~Dg~i~iwd 329 (368)
.++++... .+.....+...+.+.|..+.++|+++.++.+. ...++|++||
T Consensus 386 ~~l~~~~~---------------------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 386 SQVLAFDL---------------------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEEEEEET---------------------------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeC---------------------------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 44433321 12222223223466788999999986555443 3458899999
Q ss_pred CCC
Q psy4579 330 YTK 332 (368)
Q Consensus 330 ~~~ 332 (368)
+..
T Consensus 439 ~~t 441 (741)
T 1yr2_A 439 PAT 441 (741)
T ss_dssp TTT
T ss_pred CCC
Confidence 864
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.99 E-value=6.2e-08 Score=85.01 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=110.7
Q ss_pred CCceeeEecCCCCCeeEEEeCC------------------------CcEEEEeCCCCCCCCcccccceeee-ccccceec
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDD------------------------HTICLWDINATPKENRVIDAKTIFT-GHTAVVEV 183 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~ 183 (368)
+.+.+++++|+| +++++...+ +.|.+||..++. ....+. ++-...
T Consensus 24 ~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p-- 93 (329)
T 3fvz_A 24 GQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLP-- 93 (329)
T ss_dssp SCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSE--
T ss_pred CCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCc--
Confidence 578999999998 888888777 479999987664 222232 222334
Q ss_pred ceeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeee---------ecccccEeEEEEeeecccccCCCCccc
Q psy4579 184 RYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF---------TGHTAVVEDYSIHRLILGTHTSDEQNH 254 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~v~~v~~~~~~~~~~~~d~~~~ 254 (368)
..++++|+ ++++++.+.++.|++||...... .+..+ .++......+++++. ...
T Consensus 94 -~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~---------~g~ 156 (329)
T 3fvz_A 94 -HGLSIDTD-GNYWVTDVALHQVFKLDPHSKEG------PLLILGRSMQPGSDQNHFCQPTDVAVEPS---------TGA 156 (329)
T ss_dssp -EEEEECTT-SCEEEEETTTTEEEEECTTCSSC------CSEEESBTTBCCCSTTCCSSEEEEEECTT---------TCC
T ss_pred -eEEEECCC-CCEEEEECCCCEEEEEeCCCCeE------EEEEecccCCCCCCccccCCCcEEEEeCC---------CCe
Confidence 38999998 88889988999999999865311 12222 123334566777640 012
Q ss_pred eEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeee---------cCcccceeEEEEeCCCCcEEEEecCCCeE
Q psy4579 255 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK---------INHEGEVNRARYMPQNPCVIATKTPSSDV 325 (368)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---------~~h~~~i~~~~~~p~~~~~lasgs~Dg~i 325 (368)
+++... + ..+.+..++ ..+.....+. .++......++++|++..++++...++.|
T Consensus 157 lyv~d~-------------~--~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I 220 (329)
T 3fvz_A 157 VFVSDG-------------Y--CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI 220 (329)
T ss_dssp EEEEEC-------------S--SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEeC-------------C--CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE
Confidence 222210 0 011122222 1222222221 12334578999999944888899999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeeeccee
Q psy4579 326 LVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYN 363 (368)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p 363 (368)
++||... ++........++...+++++|+|
T Consensus 221 ~~~~~~~--------G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 221 QCFKTDT--------KEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEEETTT--------CCEEEEECCTTTTTCEEEEEEET
T ss_pred EEEECCC--------CcEEEEEeccccCCCcceeeecC
Confidence 9999863 11211111235666788888887
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.95 E-value=2.6e-08 Score=96.65 Aligned_cols=229 Identities=7% Similarity=-0.009 Sum_probs=126.2
Q ss_pred EEEEEEecCCCccccccCCc-ccCCCCcccCCCCCeeeeeccccCCCC--ceeeEecCCCCCeeEEEeCCCc--------
Q psy4579 84 LLIASVQLPNEDAQFDASNY-DTDKGGNVQLPNEDAQFDASNYDTDKG--GYGLSWNPSLNGYLLSASDDHT-------- 152 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~-~~~~~g~i~i~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~lasg~~dg~-------- 152 (368)
..+..+.|++++..+..+.. ..+.+..|++|++++..... ..+-.. ...++|+|+| +.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCC-CEEEEEEecCCCCCccccC
Confidence 46778888766554442221 12235789999987654331 112222 2789999999 88999888776
Q ss_pred -----EEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC----cEEEEECCCCCCCCccccc
Q psy4579 153 -----ICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH----TICLWDINATPKENRVIDA 223 (368)
Q Consensus 153 -----v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~ 223 (368)
|++|++.++..... .+.....|...+ .++.|+|+ +.+|+.++.++ .|.+||..++.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~---lv~~~~~~~~~~---~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~-------- 263 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDT---VVHERTGDPTTF---LQSDLSRD-GKYLFVYILRGWSENDVYWKRPGEKD-------- 263 (695)
T ss_dssp GGGCEEEEEETTSCGGGCE---EEECCCCCTTCE---EEEEECTT-SCCEEEEEEETTTEEEEEEECTTCSS--------
T ss_pred CCCCEEEEEECCCCchhce---EEEecCCCCEEE---EEEEECCC-CCEEEEEEeCCCCceEEEEEcCCCCc--------
Confidence 99999987642110 111222344455 38999999 77777776665 56666543321
Q ss_pred eeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCce--eeeeecCc-c
Q psy4579 224 KTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI--EIEIKINH-E 300 (368)
Q Consensus 224 ~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~h-~ 300 (368)
...+..+...+....++ ++. +++.+ ..+...+.+..++..++.. ...+...+ .
T Consensus 264 ~~~l~~~~~~~~~~~~~---------~g~--l~~~s-------------~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHAW---------KDR--FYVLT-------------DEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp CEEEEECSSCCEEEEEE---------TTE--EEEEE-------------CTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred eEEeecCCCceEEEEec---------CCc--EEEEE-------------CCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 23333343333333332 111 22221 1112223344444444432 12222123 4
Q ss_pred cceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeeecceee
Q psy4579 301 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGLIEGTYNC 364 (368)
Q Consensus 301 ~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~w~p~ 364 (368)
..+..++|+ ++ .++++...|+..+||.+... + .....+..+ .+.|.+++++|.
T Consensus 320 ~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~-------g--~~~~~l~~~~~~~v~~~~~s~d 373 (695)
T 2bkl_A 320 ASLLSVSIV-GG-HLSLEYLKDATSEVRVATLK-------G--KPVRTVQLPGVGAASNLMGLED 373 (695)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETTEEEEEEEETT-------C--CEEEECCCSSSSEECCCBSCTT
T ss_pred CeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCC-------C--CeeEEecCCCCeEEEEeecCCC
Confidence 467888888 44 78889999999999877531 1 111223333 555666766653
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.95 E-value=4.2e-09 Score=92.96 Aligned_cols=227 Identities=8% Similarity=0.028 Sum_probs=121.2
Q ss_pred CceeeEecCCcccccCCCCc---cccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcc--------------
Q psy4579 42 PSLTAQWLPDVTSVQLPNED---AQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYD-------------- 104 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------- 104 (368)
.+.+++|+|||++|++.+.+ +...++.+++..|....-..... +..+.|.+++..+......
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 46679999999999987654 34345666554443221111112 6677776555444332211
Q ss_pred ---------cCCCCcccCCCCCeeee-eccccCCCCceeeEecCCCCCeeEEEeCCC-------cEEEEeCCCCCCCCcc
Q psy4579 105 ---------TDKGGNVQLPNEDAQFD-ASNYDTDKGGYGLSWNPSLNGYLLSASDDH-------TICLWDINATPKENRV 167 (368)
Q Consensus 105 ---------~~~~g~i~i~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~lasg~~dg-------~v~iwd~~~~~~~~~~ 167 (368)
......|.+|+..+... ..+.. . .+..+.|+|+| +++++..++ ...||.+.++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~------ 208 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG------ 208 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT------
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC------
Confidence 01134677788764333 33333 3 78899999997 666665542 4556655532
Q ss_pred cccceeeeccccceecceeeEEeCCCCCeEEEeeCC--------CcEEEEECCCCCCCCccccceeeeecccccEeE-EE
Q psy4579 168 IDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD--------HTICLWDINATPKENRVIDAKTIFTGHTAVVED-YS 238 (368)
Q Consensus 168 ~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-v~ 238 (368)
....+..+ ..+. . ++|+ +..|+.++.+ ..|.+|| ++. ......++...+.. +.
T Consensus 209 --~~~~l~~~-~~~~---~--~spd-g~~l~~~~~~~~~~~~~~~~l~~~d--~~~-------~~~l~~~~~~~~~~~~~ 270 (347)
T 2gop_A 209 --KEEKMFEK-VSFY---A--VDSD-GERILLYGKPEKKYMSEHNKLYIYD--GKE-------VMGILDEVDRGVGQAKI 270 (347)
T ss_dssp --EEEEEEEE-ESEE---E--EEEC-SSCEEEEECCSSSCCCSSCEEEEEC--SSC-------EEESSTTCCSEEEEEEE
T ss_pred --ceEEeccC-ccee---e--ECCC-CCEEEEEEccccCCccccceEEEEC--CCc-------eEeccccCCcccCCccE
Confidence 12333334 3332 3 3898 7777776644 3677777 321 12223344555654 55
Q ss_pred EeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEE
Q psy4579 239 IHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318 (368)
Q Consensus 239 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~las 318 (368)
|+..++.++..++..++| . .+++. ..+. .+...|.+++|+| . ++++
T Consensus 271 ~sdg~~~~~~~~~~~~l~-~----------------------------~~g~~-~~~~-~~~~~v~~~~~s~-~--~~~~ 316 (347)
T 2gop_A 271 KDGKVYFTLFEEGSVNLY-I----------------------------WDGEI-KPIA-KGRHWIMGFDVDE-I--VVYL 316 (347)
T ss_dssp ETTEEEEEEEETTEEEEE-E----------------------------ESSSE-EEEE-CSSSEEEEEEESS-S--EEEE
T ss_pred EcCcEEEEEecCCcEEEE-E----------------------------cCCce-EEEe-cCCCeEEeeeeeC-c--EEEE
Confidence 531122222222222222 1 12222 2222 4577899999999 3 5556
Q ss_pred ecCCCeE-EEEECC
Q psy4579 319 KTPSSDV-LVFDYT 331 (368)
Q Consensus 319 gs~Dg~i-~iwd~~ 331 (368)
++.++.. .||.+.
T Consensus 317 ~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 317 KETATRLRELFTWD 330 (347)
T ss_dssp EECSSSCCEEEEES
T ss_pred EcCCCChHHheEeC
Confidence 6666665 788774
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.91 E-value=4.3e-07 Score=77.87 Aligned_cols=236 Identities=8% Similarity=0.013 Sum_probs=131.7
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccC-C-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCee
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTS-D-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ 119 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~ 119 (368)
.+.++.+.|+++.++....++.+..++ .. +.... . ......+..+.+.+.+..+.+ . ..++.|..|+.+++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d--~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~---~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCIN--LD-GKITEYPLPTPDAKVMCLTISSDGEVWFT-E---NAANKIGRITKKGI 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEC--TT-CCEEEEECSSTTCCEEEEEECTTSCEEEE-E---TTTTEEEEECTTSC
T ss_pred CccceEECCCCCEEEEecCCCcEEEEc--CC-CCeEEecCCcccCceeeEEECCCCCEEEe-C---CCCCeEEEECCCCc
Confidence 467899999999877655556553333 22 21111 1 111123445555433332222 1 23567888887654
Q ss_pred eeec-cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE
Q psy4579 120 FDAS-NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 120 ~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
.... .......+.++++.|++ .++++...++.|.+||. ++.. .......+...+. ++++.++ +.+.+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~------~~~~~~~~~~~~~---~i~~~~~-g~l~v 156 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI------REYELPNKGSYPS---FITLGSD-NALWF 156 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE------EEEECSSTTCCEE---EEEECTT-SCEEE
T ss_pred EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE------EEecCCCCCCCCc---eEEEcCC-CCEEE
Confidence 3221 12245578999999998 78887777889999998 4321 0111122233343 8999988 77777
Q ss_pred EeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCC
Q psy4579 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 278 (368)
Q Consensus 199 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 278 (368)
+...++.|..||. ++.. . ..........+..+++.+ + ..+|+... ..
T Consensus 157 ~~~~~~~i~~~~~-~g~~-----~-~~~~~~~~~~~~~i~~~~--------~--g~l~v~~~----------------~~ 203 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDI-----T-EFKIPTPASGPVGITKGN--------D--DALWFVEI----------------IG 203 (299)
T ss_dssp EETTTTEEEEECT-TCCE-----E-EEECSSTTCCEEEEEECT--------T--SSEEEEET----------------TT
T ss_pred EeCCCCEEEEEcC-CCcE-----E-EeeCCCCCCcceeEEECC--------C--CCEEEEcc----------------CC
Confidence 7777889999998 4321 0 011122233455555542 1 22444321 11
Q ss_pred CCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 279 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
+.+..++. +++........+...+.++++++++ .++++...++.|..||..
T Consensus 204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT
T ss_pred ceEEEECC-CCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC
Confidence 12233333 3332221111355678999999999 577676678999999973
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.88 E-value=1.4e-07 Score=82.63 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=110.8
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL 187 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i 187 (368)
++.++.| .+.....+..+...+.+++|+|++ ++++++..++.|.+||..++. .......+...+. ++
T Consensus 26 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~---~i 92 (333)
T 2dg1_A 26 ESELQTI--TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPA---AI 92 (333)
T ss_dssp GGGSCEE--ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEE---EE
T ss_pred cccCccc--ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc-------EEEEeeCCCCCcc---eE
Confidence 5666777 333444455666778999999998 788888889999999988763 1222223445564 99
Q ss_pred EEeCCCCCeEEEeeCC----CcEEEEECCCCCCCCccccceeeee--cccccEeEEEEeeecccccCCCCccceEEEEee
Q psy4579 188 SWNPSLNGYLLSASDD----HTICLWDINATPKENRVIDAKTIFT--GHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQ 261 (368)
Q Consensus 188 ~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~ 261 (368)
+|+|+ +.++++...+ +.|.+||..++.. ...+. .+...++.+++++. ..+|+....
T Consensus 93 ~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~i~~d~~----------g~l~v~~~~ 154 (333)
T 2dg1_A 93 KIHKD-GRLFVCYLGDFKSTGGIFAATENGDNL-------QDIIEDLSTAYCIDDMVFDSK----------GGFYFTDFR 154 (333)
T ss_dssp EECTT-SCEEEEECTTSSSCCEEEEECTTSCSC-------EEEECSSSSCCCEEEEEECTT----------SCEEEEECC
T ss_pred EECCC-CcEEEEeCCCCCCCceEEEEeCCCCEE-------EEEEccCccCCcccceEECCC----------CCEEEEecc
Confidence 99998 7877777666 6899999877531 11111 23345677777541 234443321
Q ss_pred cCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 262 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
-... ...+.+..++...++... +. .+...+..++|+|++..++++.+.++.|.+||+..
T Consensus 155 ~~~~----------~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 155 GYST----------NPLGGVYYVSPDFRTVTP-II-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CBTT----------BCCEEEEEECTTSCCEEE-EE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccc----------CCCceEEEEeCCCCEEEE-ee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 0000 001112222222222221 11 23345788999999965766777789999999853
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.85 E-value=4.4e-08 Score=84.45 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=86.8
Q ss_pred eeeEecCCcc-cccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCC-Ceeee
Q psy4579 44 LTAQWLPDVT-SVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNE-DAQFD 121 (368)
Q Consensus 44 ~~~~~~p~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~-~~~~~ 121 (368)
-++.|+|+++ .++++..++.+ +.|+...+....... ...+..+.+.+.+..+ ++. ..++.|.+|+. +++..
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i--~~~~~~~~~~~~~~~-~~~~~~l~~~~dg~l~-v~~---~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRT--WAWSDDGQLSPEMHP-SHHQNGHCLNKQGHLI-ACS---HGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEE--EEEETTSCEEEEESS-CSSEEEEEECTTCCEE-EEE---TTTTEEEEECSTTCCEE
T ss_pred cCCeEeCCCCEEEEEeCCCCEE--EEEECCCCeEEEECC-CCCcceeeECCCCcEE-EEe---cCCCeEEEEcCCCCcEE
Confidence 4699999998 66667777766 444443331111111 1124455564444332 222 23567888987 44332
Q ss_pred ecccc----CCCCceeeEecCCCCCeeEE----EeC-------------CCcEEEEeCCCCCCCCcccccceeeeccccc
Q psy4579 122 ASNYD----TDKGGYGLSWNPSLNGYLLS----ASD-------------DHTICLWDINATPKENRVIDAKTIFTGHTAV 180 (368)
Q Consensus 122 ~~~~~----h~~~v~~l~~sp~~~~~las----g~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 180 (368)
..... ....+.+++++|+| +++++ |.. .+.|..++.. + ....+..+...
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~~~~~~~~~ 173 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--------TLSAPIRDRVK 173 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--------CEEEEECCCSS
T ss_pred EEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C--------CEEEeecCCCC
Confidence 21111 22457789999999 88887 331 2344444443 2 12333444444
Q ss_pred eecceeeEEeCCCCCeEEEeeCCCcEEEEECC
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
.. .++|+|+ +..+++.+.++.|.+||+.
T Consensus 174 ~~---gi~~s~d-g~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 174 PN---GLAFLPS-GNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp EE---EEEECTT-SCEEEEETTTTEEEEEEEC
T ss_pred Cc---cEEECCC-CCEEEEeCCCCeEEEEEEC
Confidence 43 8999999 7777888889999999987
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=1.6e-07 Score=84.09 Aligned_cols=201 Identities=9% Similarity=0.041 Sum_probs=104.8
Q ss_pred CCCceeeEecCCCCCeeEEEeC-C--CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASD-D--HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH 204 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg 204 (368)
...+.+++|+|+| +.|+.... + ..|.+||+.++. ...+..+..... ..+.|+|+ ++.|+.++.++
T Consensus 35 ~~~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~--------~~~l~~~~~~~~--~~~~~spd-g~~l~~~~~~~ 102 (396)
T 3c5m_A 35 RNYFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQ--------AVQLTEGKGDNT--FGGFISTD-ERAFFYVKNEL 102 (396)
T ss_dssp CCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTE--------EEECCCSSCBCT--TTCEECTT-SSEEEEEETTT
T ss_pred ceeeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCc--------EEEeecCCCCcc--ccceECCC-CCEEEEEEcCC
Confidence 3447889999999 77666543 3 368888887653 223333333321 24889999 89999999999
Q ss_pred cEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCccccccccc--ccCCCCCcc
Q psy4579 205 TICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN--YDTDKGDFG 282 (368)
Q Consensus 205 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~ 282 (368)
.|.+||+.++. .......+...... ...+.....+....++.....+.++...+.... .......+.
T Consensus 103 ~l~~~d~~~~~-------~~~~~~~~~~~~~~----g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 103 NLMKVDLETLE-------EQVIYTVDEEWKGY----GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp EEEEEETTTCC-------EEEEEECCTTEEEE----EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred cEEEEECCCCC-------cEEEEecccccCCC----CCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 99999998763 12222222221110 001111111111111111111222222211111 011223455
Q ss_pred cccCCCCceeeeeecCcccceeEEEEeC-CCCcEEEEecCC------CeEEEEECCCCCCCCCCCCCCCCceeeecc--c
Q psy4579 283 GFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPS------SDVLVFDYTKHPSKPDPNGECHPDLRLRGH--Q 353 (368)
Q Consensus 283 ~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~lasgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~gh--~ 353 (368)
.++..+++..... .+...+..+.|+| ++ ..|+..+.+ ..|.+||+... . ...+..+ .
T Consensus 172 ~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~----------~-~~~l~~~~~~ 237 (396)
T 3c5m_A 172 KVDIETGELEVIH--QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGS----------N-VRKIKEHAEG 237 (396)
T ss_dssp EEETTTCCEEEEE--EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSC----------C-CEESSCCCTT
T ss_pred EEECCCCcEEeec--cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCC----------c-eeEeeccCCC
Confidence 6666666544332 4667889999999 67 434343333 46888887531 1 1122222 2
Q ss_pred Cceeeecceeee
Q psy4579 354 KEGLIEGTYNCY 365 (368)
Q Consensus 354 ~~V~~l~w~p~~ 365 (368)
..+..++|+|+.
T Consensus 238 ~~~~~~~~spdg 249 (396)
T 3c5m_A 238 ESCTHEFWIPDG 249 (396)
T ss_dssp EEEEEEEECTTS
T ss_pred ccccceEECCCC
Confidence 357778888864
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.80 E-value=1.3e-07 Score=81.52 Aligned_cols=192 Identities=10% Similarity=-0.023 Sum_probs=113.2
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec---c-cccee
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG---H-TAVVE 182 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---h-~~~v~ 182 (368)
.++.|..|+.++. ...+..+...+.+++++|+| +++++...++.|.+||..++.. ...... . ...+
T Consensus 48 ~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~-------~~~~~~~~~~~~~~~- 117 (296)
T 3e5z_A 48 RQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEW-------ESIADSFEGKKLNSP- 117 (296)
T ss_dssp GGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCE-------EEEECEETTEECCCC-
T ss_pred CCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcE-------EEEeeccCCCCCCCC-
Confidence 3678888988776 44455577789999999998 7888777789999999876642 111111 1 1123
Q ss_pred cceeeEEeCCCCCeEEE----eeC-------------CCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee--c
Q psy4579 183 VRYGLSWNPSLNGYLLS----ASD-------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL--I 243 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~ 243 (368)
.++++.|+ +.++++ |+. .+.|..+|.. +. ...+..+....+.++|++. .
T Consensus 118 --~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------~~~~~~~~~~~~gi~~s~dg~~ 185 (296)
T 3e5z_A 118 --NDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--------LSAPIRDRVKPNGLAFLPSGNL 185 (296)
T ss_dssp --CCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--------EEEEECCCSSEEEEEECTTSCE
T ss_pred --CCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CC--------EEEeecCCCCCccEEECCCCCE
Confidence 38999998 888887 331 2345555544 21 2233344455677787641 1
Q ss_pred ccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCC-CCce---eeeeecCcccceeEEEEeCCCCcEEEEe
Q psy4579 244 LGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV-SGKI---EIEIKINHEGEVNRARYMPQNPCVIATK 319 (368)
Q Consensus 244 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~---~~~~~~~h~~~i~~~~~~p~~~~~lasg 319 (368)
+.+...+. .++.+ +.. .+.+ ...+ ..+...+..++++++| +++++.
T Consensus 186 lv~~~~~~--~i~~~--------------------------~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G-~l~v~~ 235 (296)
T 3e5z_A 186 LVSDTGDN--ATHRY--------------------------CLNARGETEYQGVHF-TVEPGKTDGLRVDAGG-LIWASA 235 (296)
T ss_dssp EEEETTTT--EEEEE--------------------------EECSSSCEEEEEEEE-CCSSSCCCSEEEBTTS-CEEEEE
T ss_pred EEEeCCCC--eEEEE--------------------------EECCCCcCcCCCeEe-eCCCCCCCeEEECCCC-CEEEEc
Confidence 12222111 22221 111 1222 1111 2345567789999999 566554
Q ss_pred cCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecce-ee
Q psy4579 320 TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTY-NC 364 (368)
Q Consensus 320 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~-p~ 364 (368)
++.|.+||... ..+..+..+.. +.+++|+ |.
T Consensus 236 --~~~v~~~~~~g-----------~~~~~~~~~~~-~~~~~f~~~d 267 (296)
T 3e5z_A 236 --GDGVHVLTPDG-----------DELGRVLTPQT-TSNLCFGGPE 267 (296)
T ss_dssp --TTEEEEECTTS-----------CEEEEEECSSC-CCEEEEESTT
T ss_pred --CCeEEEECCCC-----------CEEEEEECCCC-ceeEEEECCC
Confidence 88999999752 33334555555 7788884 54
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.78 E-value=2.4e-07 Score=80.24 Aligned_cols=239 Identities=13% Similarity=0.154 Sum_probs=125.8
Q ss_pred eeeEecCCcccccC-------CCCccccccCcceeeeccccC-CC---C-CcEEEEEEecCCC-ccccccCCcccCCCCc
Q psy4579 44 LTAQWLPDVTSVQL-------PNEDAQFDASNYDTDKGTHTS-DE---Q-NHLLIASVQLPNE-DAQFDASNYDTDKGGN 110 (368)
Q Consensus 44 ~~~~~~p~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~g~ 110 (368)
.++.|.|+++.+++ +..++.+. .|+...+.... .. . ....+..+.+.++ +..+.+.. .+.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~--~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-----~~~ 93 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEIL--RIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-----RLG 93 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEE--EECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----TTE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEE--EEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-----CCC
Confidence 46899999988777 56666663 33332222110 01 0 0112445555444 32222221 234
Q ss_pred ccCCCCCeeeeec-cc----cCCCCceeeEecCCCCCeeEEEeCC---------------CcEEEEeCCCCCCCCccccc
Q psy4579 111 VQLPNEDAQFDAS-NY----DTDKGGYGLSWNPSLNGYLLSASDD---------------HTICLWDINATPKENRVIDA 170 (368)
Q Consensus 111 i~i~~~~~~~~~~-~~----~h~~~v~~l~~sp~~~~~lasg~~d---------------g~v~iwd~~~~~~~~~~~~~ 170 (368)
|..|+.+++.... .. .....+.+++++|+| +++++...+ +.|..+|.. +.
T Consensus 94 l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-------- 163 (314)
T 1pjx_A 94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-------- 163 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------
T ss_pred EEEEeCCCCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--------
Confidence 6667766433211 11 122458899999998 777776655 456666654 21
Q ss_pred ceeeeccccceecceeeEEe----CCCCCe-EEEeeCCCcEEEEECC-CCCCCCccccceeeeeccc-ccEeEEEEeeec
Q psy4579 171 KTIFTGHTAVVEVRYGLSWN----PSLNGY-LLSASDDHTICLWDIN-ATPKENRVIDAKTIFTGHT-AVVEDYSIHRLI 243 (368)
Q Consensus 171 ~~~~~~h~~~v~~~~~i~~~----p~~~~~-l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~ 243 (368)
...+..+..... .++|+ |+ ++. +++...++.|.+||+. .+... .......+.++. .....+++++
T Consensus 164 ~~~~~~~~~~~~---~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~~~~~p~~i~~d~-- 235 (314)
T 1pjx_A 164 MIQVDTAFQFPN---GIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKIE--NKKVWGHIPGTHEGGADGMDFDE-- 235 (314)
T ss_dssp EEEEEEEESSEE---EEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEEE--EEEEEEECCCCSSCEEEEEEEBT--
T ss_pred EEEeccCCCCcc---eEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCccc--cceEEEECCCCCCCCCCceEECC--
Confidence 122222222333 88999 98 644 5555678999999976 22100 000111222222 3344454432
Q ss_pred ccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCC
Q psy4579 244 LGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS 323 (368)
Q Consensus 244 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg 323 (368)
...+|+... ..+.+..++..+++....+. .+...+.+++|+|++..++++...++
T Consensus 236 --------~G~l~v~~~----------------~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 236 --------DNNLLVANW----------------GSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp --------TCCEEEEEE----------------TTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred --------CCCEEEEEc----------------CCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCC
Confidence 123444431 01123333333344333333 45577899999999955777777889
Q ss_pred eEEEEECCC
Q psy4579 324 DVLVFDYTK 332 (368)
Q Consensus 324 ~i~iwd~~~ 332 (368)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999999864
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.77 E-value=1.3e-06 Score=73.89 Aligned_cols=177 Identities=6% Similarity=0.022 Sum_probs=101.0
Q ss_pred CCCcccCCCCCeeeeec-cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecc
Q psy4579 107 KGGNVQLPNEDAQFDAS-NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVR 184 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 184 (368)
.++.|..|+..+..... ...+...+.++++++++ +++++.. ++.|.+||...... ..+. .....+
T Consensus 44 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~--------~~~~~~~~~~p--- 110 (270)
T 1rwi_B 44 MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ--------TVLPFDGLNYP--- 110 (270)
T ss_dssp SSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC--------EECCCCSCSSE---
T ss_pred CCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE--------eeeecCCcCCC---
Confidence 35678778765533222 12344578899999998 7666666 88999999876421 2222 121334
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCC
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPN 264 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~ 264 (368)
.++++.|+ +.++++...++.|.+||..+... .............+++++ + ..+|+....
T Consensus 111 ~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~--------~--g~l~v~~~~--- 169 (270)
T 1rwi_B 111 EGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQ-------TVLPFTGLNDPDGVAVDN--------S--GNVYVTDTD--- 169 (270)
T ss_dssp EEEEECTT-CCEEEEEGGGTEEEEECTTCCSC-------EECCCCSCCSCCCEEECT--------T--CCEEEEEGG---
T ss_pred cceEECCC-CCEEEEECCCCEEEEEECCCcee-------EeeccccCCCceeEEEeC--------C--CCEEEEECC---
Confidence 38999997 77888877889999997654311 111111122344555542 1 124443310
Q ss_pred cccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 265 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 265 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+..++......... ...+...+.+++++++| +++++...++.|.+||...
T Consensus 170 -------------~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 170 -------------NNRVVKLEAESNNQVVL-PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp -------------GTEEEEECTTTCCEEEC-CCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC
T ss_pred -------------CCEEEEEecCCCceEee-cccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC
Confidence 01122222222222211 11334668899999999 7887877889999999864
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.76 E-value=2e-07 Score=87.70 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=109.0
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCC--CCCCCCcccccceeeeccccceecc
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVEVR 184 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~~ 184 (368)
.++.|.++|..+..+.........+..+.|+|+| +++.+++.|+.|.+||+. +.+ ....+.....+.
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~-------~v~~i~~G~~P~--- 243 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPT-------TVAEIKIGSEAR--- 243 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCC-------EEEEEECCSEEE---
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCc-------EeEEEecCCCCc---
Confidence 5788999998765444444455567799999999 888899999999999995 432 344555444443
Q ss_pred eeeEEe----CCCCCeEEEee-CCCcEEEEECCCCCCCCccccceeeeecc----------cc-cEeEEEEeeecccccC
Q psy4579 185 YGLSWN----PSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGH----------TA-VVEDYSIHRLILGTHT 248 (368)
Q Consensus 185 ~~i~~~----p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~-~v~~v~~~~~~~~~~~ 248 (368)
.++|+ |+ +.++++++ .+++|.++|..+.+ ++..+... .. .+..+..++
T Consensus 244 -~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~------- 307 (567)
T 1qks_A 244 -SIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASH------- 307 (567)
T ss_dssp -EEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECS-------
T ss_pred -eeEEccccCCC-CCEEEEEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcC-------
Confidence 89999 68 76666554 56999999987753 33333211 11 222332221
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEE
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVF 328 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iw 328 (368)
++ ..++... ...|.+..++....................+.|+|++.+++++...++.|.++
T Consensus 308 -~~--~~~vv~~---------------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 308 -YR--PEFIVNV---------------KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp -SS--SEEEEEE---------------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred -CC--CEEEEEe---------------cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 00 1111111 11222333332222111111112233456788999998788777788999999
Q ss_pred ECCC
Q psy4579 329 DYTK 332 (368)
Q Consensus 329 d~~~ 332 (368)
|...
T Consensus 370 D~~t 373 (567)
T 1qks_A 370 DTKE 373 (567)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9975
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.70 E-value=1.8e-07 Score=91.42 Aligned_cols=230 Identities=10% Similarity=0.018 Sum_probs=120.4
Q ss_pred EEEEEEecCCCccccccCCcccCCC--CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCc---------
Q psy4579 84 LLIASVQLPNEDAQFDASNYDTDKG--GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHT--------- 152 (368)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~~~--g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~--------- 152 (368)
..+....|++++..+...... .++ ..|++|++++........+...+..++|+|+ +.|+.++.|+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~-~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQD-GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEE-TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT--SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcC-CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC--CEEEEEEecCcccccccccC
Confidence 457777787665544433211 122 4699999876443332222233468999999 45555555543
Q ss_pred -----EEEEeCCCCCCCCcccccceeeec--cccceecceeeEEeCCCCCeEEEeeCCC-----cEEEEECCCCCCCCcc
Q psy4579 153 -----ICLWDINATPKENRVIDAKTIFTG--HTAVVEVRYGLSWNPSLNGYLLSASDDH-----TICLWDINATPKENRV 220 (368)
Q Consensus 153 -----v~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~i~~~p~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~ 220 (368)
|++|++.++... ....+.. +...+ ..+.|+|+ +.+|+..+.++ .|.+||+.++...
T Consensus 240 ~~~~~v~~~~lgt~~~~-----~~lv~~~~~~~~~~---~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~--- 307 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSA-----DQPVFATPELPKRG---HGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIG--- 307 (741)
T ss_dssp CCCCEEEEEETTSCGGG-----CEEEECCTTCTTCE---EEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEEC---
T ss_pred CCCCEEEEEECCCCchh-----CEEEeccCCCCeEE---EEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCc---
Confidence 889998765321 1122332 22234 38999999 88777776544 8999998765110
Q ss_pred ccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCC-ceeeeeecCc
Q psy4579 221 IDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG-KIEIEIKINH 299 (368)
Q Consensus 221 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~h 299 (368)
+...+..+...+....+.. + ..+++.+- .+...+.+..++..++ .....+...+
T Consensus 308 --~~~~l~~~~~~~~~~~~~d---------g-~~l~~~s~-------------~~~~~~~l~~~d~~~~~~~~~~l~~~~ 362 (741)
T 1yr2_A 308 --PVTALIPDLKAQWDFVDGV---------G-DQLWFVSG-------------DGAPLKKIVRVDLSGSTPRFDTVVPES 362 (741)
T ss_dssp --CCEEEECSSSSCEEEEEEE---------T-TEEEEEEC-------------TTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred --ccEEecCCCCceEEEEecc---------C-CEEEEEEC-------------CCCCCCEEEEEeCCCCccccEEEecCC
Confidence 0223333333332222210 0 11111110 0111222333333332 1222233245
Q ss_pred ccceeEEEEeCCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeeecceee
Q psy4579 300 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGLIEGTYNC 364 (368)
Q Consensus 300 ~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~w~p~ 364 (368)
...+..++|. .+ .++++...|+..+||.+... + .....+.. +.+.|..++|+|.
T Consensus 363 ~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~-------g--~~~~~l~~~~~~~v~~~~~s~d 417 (741)
T 1yr2_A 363 KDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLD-------G--KPAGAVSLPGIGSASGLSGRPG 417 (741)
T ss_dssp SSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETT-------S--CEEEECBCSSSCEEEEEECCBT
T ss_pred CCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCC-------C--CceeeccCCCCeEEEEeecCCC
Confidence 5556677777 33 78889999999888876521 1 11222332 3566777777764
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.68 E-value=4.8e-06 Score=71.31 Aligned_cols=236 Identities=7% Similarity=0.021 Sum_probs=128.7
Q ss_pred CceeeEecCCcccccCCCCccccccCcceeeeccccC-C-CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCee
Q psy4579 42 PSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTS-D-EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQ 119 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~ 119 (368)
.+.++.+.++++..++...++.+..++ .. +.... . ......+..+.+.+.+..+.+ . ..++.|..++.+++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~--~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~---~~~~~v~~~d~~g~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLD--QS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFT-E---NGANKIGKLSKKGG 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEC--TT-SCEEEEECSSTTCCEEEEEECTTSCEEEE-E---TTTTEEEEECTTSC
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEEC--CC-CceEEEECCCCCCcceeEEECCCCCEEEE-e---cCCCeEEEECCCCC
Confidence 456789999999877665566653332 22 21111 1 111122444444333322222 1 23567777877654
Q ss_pred eeec-cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE
Q psy4579 120 FDAS-NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 120 ~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
.... .......+.++++.+++ .++++...++.|..+|.. +.. ....+......+ .++++.++ +.+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~------~~~~~~~~~~~~---~~i~~d~~-g~l~v 161 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTI------YEYDLPNKGSYP---AFITLGSD-NALWF 161 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE------EEEECSSTTCCE---EEEEECTT-SSEEE
T ss_pred eEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCE------EEccCCCCCCCc---eeEEECCC-CCEEE
Confidence 3321 22234678999999998 788777778899999876 321 001122222334 38999998 77777
Q ss_pred EeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCC
Q psy4579 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 278 (368)
Q Consensus 199 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 278 (368)
+...++.|..+|. ++.. . ......+...+..+++.+ ...+|+... ..
T Consensus 162 ~~~~~~~i~~~~~-~g~~-----~-~~~~~~~~~~~~~i~~d~----------~g~l~v~~~----------------~~ 208 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKL-----E-EYPLPTNAAAPVGITSGN----------DGALWFVEI----------------MG 208 (300)
T ss_dssp EETTTTEEEEECT-TCCE-----E-EEECSSTTCCEEEEEECT----------TSSEEEEET----------------TT
T ss_pred EecCCCeEEEECC-CCcE-----E-EeeCCCCCCCcceEEECC----------CCCEEEEcc----------------CC
Confidence 7666889999998 3311 0 011112223345555542 123444331 01
Q ss_pred CCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 279 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
+.+..++. ++.........+...+.++++.+++ .+.++...++.|..+|..
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND 259 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT
T ss_pred CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC
Confidence 11222222 2222222111345678899999999 577676677999999974
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.63 E-value=1.2e-06 Score=76.82 Aligned_cols=185 Identities=6% Similarity=-0.061 Sum_probs=105.7
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc-----ccee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-----AVVE 182 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~-----~~v~ 182 (368)
++.|.++|..................+++++++ .++++...++.|.+||..++. ....+.... ....
T Consensus 63 ~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~-------~~~~i~~g~~~~~~~~p~ 134 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE-------ITGYIECPDMDMESGSTE 134 (328)
T ss_dssp GTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE-------EEEEEECTTCCTTTCBCC
T ss_pred CCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe-------EEEEEEcCCccccCCCcc
Confidence 678999988753333333445678899999987 776666689999999998763 223333222 1222
Q ss_pred cceeeEEeCCCCCeEEEee-CCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEee
Q psy4579 183 VRYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQ 261 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~ 261 (368)
.+++ .+ +.++++.. .++.|.++|+.++. ....+... .....+.+.+ + .++|+....
T Consensus 135 ---~i~~-~~-~~lyv~~~~~~~~v~viD~~t~~-------~~~~i~~g-~~p~~i~~~~--------d--G~l~v~~~~ 191 (328)
T 3dsm_A 135 ---QMVQ-YG-KYVYVNCWSYQNRILKIDTETDK-------VVDELTIG-IQPTSLVMDK--------Y--NKMWTITDG 191 (328)
T ss_dssp ---CEEE-ET-TEEEEEECTTCCEEEEEETTTTE-------EEEEEECS-SCBCCCEECT--------T--SEEEEEBCC
T ss_pred ---eEEE-EC-CEEEEEcCCCCCEEEEEECCCCe-------EEEEEEcC-CCccceEEcC--------C--CCEEEEECC
Confidence 6777 32 44444443 48999999998862 22222211 1112233321 1 234443321
Q ss_pred cCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 262 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.... ..+....+.+..+|..++++...+..........++|+|++..++++. . .|.+||...
T Consensus 192 ~~~~------~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t 253 (328)
T 3dsm_A 192 GYEG------SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMPVEA 253 (328)
T ss_dssp BCTT------CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEETTC
T ss_pred CccC------CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEECCC
Confidence 1000 001111244566666666665554432234688999999986666543 3 899999875
No 196
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.56 E-value=1.7e-06 Score=76.97 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=73.7
Q ss_pred cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCc
Q psy4579 126 DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205 (368)
Q Consensus 126 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~ 205 (368)
.+.. |+.|+| ++ +.|+++ .++.|++||+.+... ......|+..+. ++.+.+. + +++++.||.
T Consensus 86 ~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~~-------~~~~~~~~~~v~---~i~~~~p--~-~av~~~dG~ 147 (388)
T 1xip_A 86 EIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELSE-------FRTVTSFEKPVF---QLKNVNN--T-LVILNSVND 147 (388)
T ss_dssp ECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTTC-------EEEEEECSSCEE---EEEECSS--E-EEEEETTSE
T ss_pred eCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhhc-------cCccceeeccee---eEEecCC--C-EEEEECCCC
Confidence 4566 999999 76 888888 889999999987642 234556666674 7777653 2 888999999
Q ss_pred EEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceE
Q psy4579 206 ICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLL 256 (368)
Q Consensus 206 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~ 256 (368)
|.+||+.++.. . .+...|.+++|+|.-+..+..|+..+++
T Consensus 148 L~v~dl~~~~~-------~----~~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 148 LSALDLRTKST-------K----QLAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp EEEEETTTCCE-------E----EEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEEEEccCCcc-------c----cccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 99999987631 1 1456899999997444445555555444
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.56 E-value=4.4e-07 Score=79.52 Aligned_cols=176 Identities=8% Similarity=-0.023 Sum_probs=101.3
Q ss_pred CCCcccCCCCCeeeeeccccCCC------CceeeEecCCCCCeeEEEe-CCCcEEEEeCCCCCCCCcccccceeeecccc
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDK------GGYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTA 179 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~------~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 179 (368)
.++.|.++|..+..+.....-.. ....+++ .++ .++++.. .++.|.++|..+++ ....+.....
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~-------~~~~i~~g~~ 173 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDK-------VVDELTIGIQ 173 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTE-------EEEEEECSSC
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCe-------EEEEEEcCCC
Confidence 36889999876533332222122 5667777 333 5555544 48999999998764 2334433333
Q ss_pred ceecceeeEEeCCCCCeEEEeeCC----------CcEEEEECCCCCCCCccccceeeeecc-cccEeEEEEeeecccccC
Q psy4579 180 VVEVRYGLSWNPSLNGYLLSASDD----------HTICLWDINATPKENRVIDAKTIFTGH-TAVVEDYSIHRLILGTHT 248 (368)
Q Consensus 180 ~v~~~~~i~~~p~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~ 248 (368)
+. .+.++|+ +.+++++..+ +.|.++|..++. ....+... ......+++++.
T Consensus 174 p~----~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-------v~~~~~~~~g~~p~~la~~~d------ 235 (328)
T 3dsm_A 174 PT----SLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-------VEKQFKFKLGDWPSEVQLNGT------ 235 (328)
T ss_dssp BC----CCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-------EEEEEECCTTCCCEEEEECTT------
T ss_pred cc----ceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCe-------EEEEEecCCCCCceeEEEecC------
Confidence 33 8899998 7777776654 789999998762 22233211 224566777640
Q ss_pred CCCccceEEEEeecCCcccccccccccCCCCCcccccCCCCceee-eeecCcccceeEEEEeCCCCcEEEEe----cCCC
Q psy4579 249 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI-EIKINHEGEVNRARYMPQNPCVIATK----TPSS 323 (368)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~~p~~~~~lasg----s~Dg 323 (368)
...+++... .+..+|..+ ++... .+...+......++++|++.+++++. ..++
T Consensus 236 ---~~~lyv~~~---------~v~~~d~~t----------~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 236 ---RDTLYWINN---------DIWRMPVEA----------DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp ---SCEEEEESS---------SEEEEETTC----------SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred ---CCEEEEEcc---------EEEEEECCC----------CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 112222210 112233332 22211 01101235678899999655888887 7789
Q ss_pred eEEEEECC
Q psy4579 324 DVLVFDYT 331 (368)
Q Consensus 324 ~i~iwd~~ 331 (368)
.|.+||..
T Consensus 294 ~V~v~d~~ 301 (328)
T 3dsm_A 294 IVYRYSPQ 301 (328)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 99999986
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.52 E-value=2.8e-05 Score=66.37 Aligned_cols=174 Identities=9% Similarity=0.019 Sum_probs=103.0
Q ss_pred CCcccCCCCCeeeeec-cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--ccccceecc
Q psy4579 108 GGNVQLPNEDAQFDAS-NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEVR 184 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~ 184 (368)
++.|..|+.++..... ...+...+.+++++++| .++++...++.|..||.... ...+. .....+
T Consensus 35 ~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~---------~~~~~~~~~~~~~--- 101 (299)
T 2z2n_A 35 ANMISCINLDGKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKKGI---------IKEYTLPNPDSAP--- 101 (299)
T ss_dssp TTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSC---------EEEEECSSTTCCE---
T ss_pred CCcEEEEcCCCCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCc---------EEEEeCCCcCCCc---
Confidence 5678888776433221 12345678999999998 78877777889999987621 12222 223334
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCC
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPN 264 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~ 264 (368)
.++++.|+ +.+.++...++.|..||. ++.. ...........+..+++.+ ...+|+...
T Consensus 102 ~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~------~~~~~~~~~~~~~~i~~~~----------~g~l~v~~~---- 159 (299)
T 2z2n_A 102 YGITEGPN-GDIWFTEMNGNRIGRITD-DGKI------REYELPNKGSYPSFITLGS----------DNALWFTEN---- 159 (299)
T ss_dssp EEEEECTT-SCEEEEETTTTEEEEECT-TCCE------EEEECSSTTCCEEEEEECT----------TSCEEEEET----
T ss_pred eeeEECCC-CCEEEEecCCceEEEECC-CCCE------EEecCCCCCCCCceEEEcC----------CCCEEEEeC----
Confidence 38999987 788887777889999998 4321 0111112233455555542 123444321
Q ss_pred cccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 265 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 265 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
..+.+..++. +++........+...+..+++++++ .++++...++.|.+||.
T Consensus 160 ------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 160 ------------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT 211 (299)
T ss_dssp ------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT
T ss_pred ------------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC
Confidence 1112223333 2333221111344568899999998 57767667889999998
No 199
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.50 E-value=1.7e-06 Score=83.90 Aligned_cols=243 Identities=12% Similarity=0.094 Sum_probs=122.7
Q ss_pred CceeeEecCCcccccC-----CCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCccc---------CC
Q psy4579 42 PSLTAQWLPDVTSVQL-----PNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDT---------DK 107 (368)
Q Consensus 42 ~~~~~~~~p~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~ 107 (368)
.+..+.|+|||++||+ |++...+ +.+++..|..............+.|. ++..+....++. ..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i--~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREI--HLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEE--EEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEE--EEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4556799999999995 3333334 55566555432210000001233444 333333222221 11
Q ss_pred CCcccCCCCCee-----eeecccc-CCCCceeeEecCCCCCeeE-EEeC---CCcEEEEeCCCCCCCCcccccceeeecc
Q psy4579 108 GGNVQLPNEDAQ-----FDASNYD-TDKGGYGLSWNPSLNGYLL-SASD---DHTICLWDINATPKENRVIDAKTIFTGH 177 (368)
Q Consensus 108 ~g~i~i~~~~~~-----~~~~~~~-h~~~v~~l~~sp~~~~~la-sg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~h 177 (368)
...|.+|++.+. .+..... |...+..+.|+|+| ++|+ +.+. +..|.++|+.++.. ....+..+
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~------~~~~l~~~ 279 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENA------PLLTVQGD 279 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTC------CCEEEECS
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCC------ceEEEeCC
Confidence 234666766432 2333333 45557889999999 6554 4332 35899999876532 23455555
Q ss_pred ccceecceeeEEeCCCCCeEEEeeCC---CcEEEEECCCCCCCCccccceeeeecccccEeEEEEee---ecccccCCCC
Q psy4579 178 TAVVEVRYGLSWNPSLNGYLLSASDD---HTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR---LILGTHTSDE 251 (368)
Q Consensus 178 ~~~v~~~~~i~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~d~ 251 (368)
..... .. |+++++.+++....+ +.|..+|+.++... ....+..|...+. .|++ .++.....++
T Consensus 280 ~~~~~---~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 280 LDADV---SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-----HWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp SSSCE---EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----GCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred CCceE---EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----ccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 55442 33 566635555555544 57999999875321 1123444444443 4433 1111111111
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecC---CCeEEEE
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP---SSDVLVF 328 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~---Dg~i~iw 328 (368)
...+ ..++.. +.....+.....+.+..+.++|++..++.+.+. -++|..|
T Consensus 349 ~~~l--------------------------~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 349 TARV--------------------------EQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp EEEE--------------------------EEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred eeEE--------------------------EEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 1111 122222 222222322445567777888888666655443 2788888
Q ss_pred ECCC
Q psy4579 329 DYTK 332 (368)
Q Consensus 329 d~~~ 332 (368)
|+..
T Consensus 402 d~~~ 405 (693)
T 3iuj_A 402 EPKS 405 (693)
T ss_dssp CTTT
T ss_pred ECCC
Confidence 8754
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.50 E-value=8.9e-06 Score=69.25 Aligned_cols=174 Identities=7% Similarity=0.000 Sum_probs=108.5
Q ss_pred CCCCcccCCCC-CeeeeeccccCC-CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc-ccee
Q psy4579 106 DKGGNVQLPNE-DAQFDASNYDTD-KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT-AVVE 182 (368)
Q Consensus 106 ~~~g~i~i~~~-~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~-~~v~ 182 (368)
+.++.|.+||. +++.+-.+..+. ..+.++.++|+| ++++ +.++.|..||. +++ .+..+..+. ..+.
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~-------~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGR-------ELWNIAAPAGCEMQ 80 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSC-------EEEEEECCTTCEEE
T ss_pred CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCC-------EEEEEcCCCCcccc
Confidence 35899999998 666665555555 478999999999 8888 34788999998 553 345565542 3453
Q ss_pred cceeeEEeCCCCCeEEEeeC-CCcEEEEECCCCCCCCccccceeeee------cccccEeEEEEeeecccccCCCCccce
Q psy4579 183 VRYGLSWNPSLNGYLLSASD-DHTICLWDINATPKENRVIDAKTIFT------GHTAVVEDYSIHRLILGTHTSDEQNHL 255 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~~~~d~~~~~ 255 (368)
++.+.|+ ++++++.+. ++.|..+|.. ++ .+..+. ++......+++. .++ .+
T Consensus 81 ---~~~~~~d-G~~lv~~~~~~~~v~~vd~~-Gk-------~l~~~~~~~~~~~~~~~~~~v~~~--------~~G--~~ 138 (276)
T 3no2_A 81 ---TARILPD-GNALVAWCGHPSTILEVNMK-GE-------VLSKTEFETGIERPHAQFRQINKN--------KKG--NY 138 (276)
T ss_dssp ---EEEECTT-SCEEEEEESTTEEEEEECTT-SC-------EEEEEEECCSCSSGGGSCSCCEEC--------TTS--CE
T ss_pred ---ccEECCC-CCEEEEecCCCCEEEEEeCC-CC-------EEEEEeccCCCCcccccccCceEC--------CCC--CE
Confidence 8889998 888888877 7788877753 31 122221 010111111111 011 11
Q ss_pred EEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 256 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++. +...+.+..++.. |+....+.. .....++...+++ +++++++.++.|..+|..+
T Consensus 139 lv~----------------~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 139 LVP----------------LFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNG-DCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp EEE----------------ETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTS-CEEEECBTTSEEEEECTTT
T ss_pred EEE----------------ecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCC-CEEEEeCCCCeEEEEeCcC
Confidence 111 1123445666665 777766652 2456678888998 6777878888899888764
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.50 E-value=1.1e-05 Score=69.73 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=105.8
Q ss_pred CCcccCCCCCeeeeeccc-----cCCCCceeeEecCC-CCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee-e----c
Q psy4579 108 GGNVQLPNEDAQFDASNY-----DTDKGGYGLSWNPS-LNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-T----G 176 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~-----~h~~~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~----~ 176 (368)
++.|..|+.......... ++...+.+++++++ + +++++.. .+.|.+||.. +.. ..+ . +
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~--------~~~~~~~~~~ 113 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTF--------EEIAKKDSEG 113 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCE--------EECCSBCTTS
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCE--------EEEEeccCCC
Confidence 577888885432222221 24567899999999 6 6555554 4478889987 431 111 1 1
Q ss_pred -cccceecceeeEEeCCCCCeEEEeeCC---------------CcEEEEECCCCCCCCccccceeeeecccccEeEEEEe
Q psy4579 177 -HTAVVEVRYGLSWNPSLNGYLLSASDD---------------HTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240 (368)
Q Consensus 177 -h~~~v~~~~~i~~~p~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 240 (368)
....+ .++++.|+ +.+.++...+ +.|..||.. +. ...+..+....+.++++
T Consensus 114 ~~~~~~---~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------~~~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 114 RRMQGC---NDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--------MIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp CBCBCC---CEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------EEEEEEEESSEEEEEEE
T ss_pred ccccCC---cCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCC-CC--------EEEeccCCCCcceEEEe
Confidence 11234 38999998 7777776655 567777654 21 11122222334556665
Q ss_pred ----eecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCC-CCc-----eeeeeecCcc-cceeEEEEe
Q psy4579 241 ----RLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV-SGK-----IEIEIKINHE-GEVNRARYM 309 (368)
Q Consensus 241 ----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~-----~~~~~~~~h~-~~i~~~~~~ 309 (368)
+. ...+|+... ..+.+..++.. .++ ....+. .+. ..+..++++
T Consensus 181 ~~~d~d---------g~~l~v~~~----------------~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d 234 (314)
T 1pjx_A 181 HMNDGR---------PYQLIVAET----------------PTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFD 234 (314)
T ss_dssp ECTTSC---------EEEEEEEET----------------TTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEB
T ss_pred cccCCC---------CCEEEEEEC----------------CCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEEC
Confidence 31 011222110 00111111111 111 111111 333 567889999
Q ss_pred CCCCcEEEEecCCCeEEEEECCCCCCCCCCCCCCCCceeeecccCceeeecceeee
Q psy4579 310 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGLIEGTYNCY 365 (368)
Q Consensus 310 p~~~~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~p~~ 365 (368)
++| +++++...++.|.+||... ......+..+...+.+++++|..
T Consensus 235 ~~G-~l~v~~~~~~~i~~~d~~~----------g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 235 EDN-NLLVANWGSSHIEVFGPDG----------GQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp TTC-CEEEEEETTTEEEEECTTC----------BSCSEEEECSSSCEEEEEECTTS
T ss_pred CCC-CEEEEEcCCCEEEEEcCCC----------CcEeEEEeCCCCCceeEEECCCC
Confidence 999 6777767789999999863 12223444555677888887653
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.44 E-value=7.8e-06 Score=70.36 Aligned_cols=227 Identities=12% Similarity=0.121 Sum_probs=114.4
Q ss_pred eeEecCCc-ccccCCCCccccccCcceeeeccccC-CCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeee
Q psy4579 45 TAQWLPDV-TSVQLPNEDAQFDASNYDTDKGTHTS-DEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDA 122 (368)
Q Consensus 45 ~~~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~ 122 (368)
...|+|+. ..+.+...++.+ +.|+...+.... ... ..+..+.+.+++..+.+ . +..|.+++.++....
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i--~~~d~~~~~~~~~~~~--~~~~~i~~~~dG~l~v~-~-----~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKV--CRWDSFTKQVQRVTMD--APVSSVALRQSGGYVAT-I-----GTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEE--EEEETTTCCEEEEECS--SCEEEEEEBTTSSEEEE-E-----TTEEEEEETTTTEEE
T ss_pred CCeEECCCCEEEEEECCCCEE--EEEECCCCcEEEEeCC--CceEEEEECCCCCEEEE-E-----CCeEEEEECCCCcEE
Confidence 57788854 445555555555 444433332211 111 12445555444332222 1 345667776532222
Q ss_pred cccc-----CCCCceeeEecCCCCCeeEEEeCC---------CcEEEEeCCCCCCCCcccccceeeeccccceecceeeE
Q psy4579 123 SNYD-----TDKGGYGLSWNPSLNGYLLSASDD---------HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLS 188 (368)
Q Consensus 123 ~~~~-----h~~~v~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~ 188 (368)
.+.. ....+++++++|+| +++++...+ ..-.+|.+..... ...+..+-... ..++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-------~~~~~~~~~~p---ngi~ 155 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHH-------VKKYFDQVDIS---NGLD 155 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSC-------EEEEEEEESBE---EEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCC-------EEEEeeccccc---cceE
Confidence 1111 12347889999998 766654322 3345666553221 12222222223 3899
Q ss_pred EeCCCCC-eEEEeeCCCcEEEEECC--CCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCc
Q psy4579 189 WNPSLNG-YLLSASDDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNE 265 (368)
Q Consensus 189 ~~p~~~~-~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 265 (368)
|+|+ ++ ++++.+.++.|.+||+. ++.... .+....+..+......+++.+ ...+|+...
T Consensus 156 ~spd-g~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~~~~~~~~p~g~~~d~----------~G~lwva~~----- 217 (297)
T 3g4e_A 156 WSLD-HKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYKLEKEEQIPDGMCIDA----------EGKLWVACY----- 217 (297)
T ss_dssp ECTT-SCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEECCGGGCEEEEEEEBT----------TSCEEEEEE-----
T ss_pred EcCC-CCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEECCCCCCCCCeeEECC----------CCCEEEEEc-----
Confidence 9998 65 45666778999999974 331000 001111222222333344321 124555432
Q ss_pred ccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEe-CCCCcEEEEecCC
Q psy4579 266 DAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYM-PQNPCVIATKTPS 322 (368)
Q Consensus 266 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~lasgs~D 322 (368)
..+.+..++..+++....+. .+...+++++|. |++..|++|...+
T Consensus 218 -----------~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 218 -----------NGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -----------TTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -----------CCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 11224445555566666555 455679999998 8887777776543
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.40 E-value=8.7e-06 Score=69.30 Aligned_cols=174 Identities=8% Similarity=-0.009 Sum_probs=102.4
Q ss_pred hhhhhhhhcCcchheeecccccccCceeeEecCCcccccCCCCccccccCcceeeeccccCC--CCCcEEEEEEecCCCc
Q psy4579 18 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSD--EQNHLLIASVQLPNED 95 (368)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 95 (368)
...++|++.+..+...+..... ..+.++.++|+|+.+++ .++.+. .++. .|...-. ......+.++.+.+++
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs--~~~~V~--~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG 88 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFS--YSKGAK--MITR-DGRELWNIAAPAGCEMQTARILPDG 88 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEE--CBSEEE--EECT-TSCEEEEEECCTTCEEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEe--CCCCEE--EECC-CCCEEEEEcCCCCccccccEECCCC
Confidence 4455666656555444433221 24678999999998883 333332 2222 2222111 1111223334433333
Q ss_pred cccccCCcccCCCCcccCCCCCeeeeeccc------cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccc
Q psy4579 96 AQFDASNYDTDKGGNVQLPNEDAQFDASNY------DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID 169 (368)
Q Consensus 96 ~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 169 (368)
..+.+.. ..++.+..++.+++.+.... .+......++..++| +++++...++.|..||.+ ++
T Consensus 89 ~~lv~~~---~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~------- 156 (276)
T 3no2_A 89 NALVAWC---GHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQ------- 156 (276)
T ss_dssp CEEEEEE---STTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-SC-------
T ss_pred CEEEEec---CCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-CC-------
Confidence 2222211 11456666676665443321 222345667889998 899999999999999987 54
Q ss_pred cceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 170 AKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 170 ~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
.+..+..+..+ +++...++ ++++++++.++.|..+|..++
T Consensus 157 ~~w~~~~~~~~----~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 157 LLNSVKLSGTP----FSSAFLDN-GDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEEEECSSCC----CEEEECTT-SCEEEECBTTSEEEEECTTTC
T ss_pred EEEEEECCCCc----cceeEcCC-CCEEEEeCCCCeEEEEeCcCC
Confidence 44556554333 37777887 889999988889999998876
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.40 E-value=2.9e-05 Score=66.77 Aligned_cols=202 Identities=8% Similarity=0.041 Sum_probs=108.4
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecc-----cccee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-----TAVVE 182 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h-----~~~v~ 182 (368)
++.|..|+.++.... .......+.+++++|+| +++++ . ++.|.+||..++.. ..+... ...+
T Consensus 34 ~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~--------~~~~~~~~~~~~~~~- 100 (297)
T 3g4e_A 34 AKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSA--------VVLATVDNDKKNNRF- 100 (297)
T ss_dssp TTEEEEEETTTCCEE-EEECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEE--------EEEEECCTTCSSEEE-
T ss_pred CCEEEEEECCCCcEE-EEeCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcE--------EEEEecCCCCCCCCC-
Confidence 567777777654332 23355789999999998 65544 3 56789999876531 122111 1223
Q ss_pred cceeeEEeCCCCCeEEEeeCC---------CcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee---cccccCCC
Q psy4579 183 VRYGLSWNPSLNGYLLSASDD---------HTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSD 250 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~~d 250 (368)
.++++.|+ +.+.++...+ ..-.||.+..... ...+.......+.++|++. ++.+....
T Consensus 101 --~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-------~~~~~~~~~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 101 --NDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHH-------VKKYFDQVDISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp --EEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-------EEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred --CCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCC-------EEEEeeccccccceEEcCCCCEEEEecCCC
Confidence 38999998 7766654322 2345555543211 1112222334456777541 11111110
Q ss_pred CccceEEEEeecCCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEEC
Q psy4579 251 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY 330 (368)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~ 330 (368)
..++... +|...|.+ ...+....+. .+.+....+++.++| ++.++....+.|..||.
T Consensus 171 --~~i~~~~--------------~d~~~G~~-----~~~~~~~~~~-~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 171 --YSVDAFD--------------YDLQTGQI-----SNRRSVYKLE-KEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDP 227 (297)
T ss_dssp --TEEEEEE--------------ECTTTCCE-----EEEEEEEECC-GGGCEEEEEEEBTTS-CEEEEEETTTEEEEECT
T ss_pred --CcEEEEe--------------ccCCCCcc-----cCcEEEEECC-CCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcC
Confidence 1111111 11111111 0001111111 234567889999999 67777777889999998
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeeecce-eee
Q psy4579 331 TKHPSKPDPNGECHPDLRLRGHQKEGLIEGTY-NCY 365 (368)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~-p~~ 365 (368)
.+ ...+..+..+...+++++|+ |+.
T Consensus 228 ~t----------G~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 228 VT----------GKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp TT----------CCEEEEEECSSSBEEEEEEESGGG
T ss_pred CC----------ceEEEEEECCCCCceEEEEeCCCC
Confidence 64 23334555566788999998 653
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.36 E-value=6.3e-05 Score=67.86 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=61.4
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCC--cEEEEeCCCCCCCCcccccceee---ec-cccc
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDH--TICLWDINATPKENRVIDAKTIF---TG-HTAV 180 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~---~~-h~~~ 180 (368)
.++.|+.|+.++..+........... ++|+|++ +.|+++..++ .|.+++...... ...+ .. ....
T Consensus 150 ~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~-------~~~~g~~~~~~~~~ 220 (409)
T 3hrp_A 150 DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA-------PTRIGQLGSTFSGK 220 (409)
T ss_dssp TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC-------EEEEEECCTTSCSC
T ss_pred CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce-------eEEeeeccchhcCC
Confidence 35778888877544433333333344 9999998 7888887766 788888765431 1122 11 2233
Q ss_pred eecceeeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
+. +++++|+ +..|+.+..++.|..||..++
T Consensus 221 p~---~iav~p~-~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 221 IG---AVALDET-EEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp CC---BCEECTT-SSEEEEECTTCEEEEEETTTC
T ss_pred cE---EEEEeCC-CCeEEEEECCCcEEEEECCCC
Confidence 43 8999996 444555777899999998765
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.34 E-value=1.1e-05 Score=78.25 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=98.2
Q ss_pred CCCCceeeEecCCCCCeeEE-----EeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee
Q psy4579 127 TDKGGYGLSWNPSLNGYLLS-----ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS 201 (368)
Q Consensus 127 h~~~v~~l~~sp~~~~~las-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s 201 (368)
|...+..++|||+| ++||- |+....|++||+.++.. .. ...+.... ..++|+ + ++.|+.++
T Consensus 127 ~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~-------~~-~~~~~~k~---~~~~Ws-D-g~~l~y~~ 192 (693)
T 3iuj_A 127 GTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQP-------LE-TPLKDVKF---SGISWL-G-NEGFFYSS 192 (693)
T ss_dssp SCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSE-------EE-EEEEEEES---CCCEEE-T-TTEEEEEE
T ss_pred CcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCC-------Cc-cccCCcee---ccEEEe-C-CCEEEEEE
Confidence 55578889999999 77773 33346799999998742 11 11111112 288999 8 78787777
Q ss_pred CCC-------------cEEEEECCCCCCCCccccceeeeec-ccccEeEEEEeeecccccCCCCccceEEEEeecCCccc
Q psy4579 202 DDH-------------TICLWDINATPKENRVIDAKTIFTG-HTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA 267 (368)
Q Consensus 202 ~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (368)
.+. .|++|++.+...... .+..... |...+..+.|++ |+ .++.+... ...
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~---~v~~~~~~~~~~~~~~~~Sp--------Dg-~~l~~~~~-~~~--- 256 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDR---LVFGAIPAQHHRYVGATVTE--------DD-RFLLISAA-NST--- 256 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCE---EEESCSGGGCCSEEEEEECT--------TS-CEEEEEEE-SSS---
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccce---EEEecCCCCCeEEEEEEEcC--------CC-CEEEEEEc-cCC---
Confidence 774 399999887643211 1122222 333455666654 11 11111111 000
Q ss_pred ccccccccCCCCCcccccCCCCce-eeeeecCcccceeEEEEeCCCCcEEEEecCC---CeEEEEECCCCCCCCCCCCCC
Q psy4579 268 QFDASNYDTDKGDFGGFGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGEC 343 (368)
Q Consensus 268 ~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~lasgs~D---g~i~iwd~~~~~~~~~~~~~~ 343 (368)
....+.++++.++.. ...+. .+....... |++++..+++....| +.|..+|+.... .
T Consensus 257 ---------~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--------~ 317 (693)
T 3iuj_A 257 ---------SGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--------P 317 (693)
T ss_dssp ---------SCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--------G
T ss_pred ---------CCcEEEEEECCCCCCceEEEe-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--------c
Confidence 011222333323321 12222 455555444 667766776666554 679999987521 1
Q ss_pred CCceeeecccCceeeecceee
Q psy4579 344 HPDLRLRGHQKEGLIEGTYNC 364 (368)
Q Consensus 344 ~~~~~~~gh~~~V~~l~w~p~ 364 (368)
.....+..|...+. .|+|.
T Consensus 318 ~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 318 AHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp GGCEEEECCCSSCE--EEEEE
T ss_pred cccEEEecCCCCEE--EEEEE
Confidence 11234556666554 66654
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.34 E-value=1.9e-05 Score=71.22 Aligned_cols=152 Identities=7% Similarity=0.037 Sum_probs=82.1
Q ss_pred eeeEecCCcccccCCCCccccccCcceeeeccccC--CCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeee
Q psy4579 44 LTAQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTS--DEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFD 121 (368)
Q Consensus 44 ~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~ 121 (368)
..++|+|+++.+++...++.+ +.++...+.... ..... .. +.+.+....+....+. ....|..++..+...
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I--~~id~~~g~~~~~~~~~~~--~~-ia~~~~g~~l~~~d~~--~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRV--RLISVDDNKVTTVHPGFKG--GK-PAVTKDKQRVYSIGWE--GTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEE--EEEETTTTEEEEEEETCCB--CB-CEECTTSSEEEEEBSS--TTCEEEEEEGGGTTC
T ss_pred eEEEEeCCCCEEEEecCCCcE--EEEECCCCEEEEeeccCCC--Cc-eeEecCCCcEEEEecC--CCceEEEEEcCCCce
Confidence 358899999977776665655 333333222111 01000 01 2232222222222211 112566666543222
Q ss_pred e-cc---cc-CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee-----eccccceecce-eeEEe
Q psy4579 122 A-SN---YD-TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-----TGHTAVVEVRY-GLSWN 190 (368)
Q Consensus 122 ~-~~---~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~-~i~~~ 190 (368)
. .+ .. ....+.+++++|++ ..|..+..++.|+.||..++.. ..+ .++.... ++ .++|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~--------~~~~~~~~~g~~~~~--P~~~ia~~ 275 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV--------TLIKQLELSGSLGTN--PGPYLIYY 275 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS-SEEEEECTTCEEEEEETTTCCE--------EEEEECCCCSCCCCS--SCCEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE--------EEEecccccCCCCCC--ccccEEEe
Confidence 1 11 12 45678899999954 3444466788999999886531 122 1111111 12 89999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCC
Q psy4579 191 PSLNGYLLSASDDHTICLWDINA 213 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~ 213 (368)
|+++.++++-..++.|+.||...
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTC
T ss_pred CCCCEEEEEeCCCCEEEEEecCC
Confidence 96467777777889999998764
No 208
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.30 E-value=6.6e-06 Score=73.03 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=113.9
Q ss_pred ceeeEecCCcccccCCCC--ccccccCcceeeeccccCC---CCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC
Q psy4579 43 SLTAQWLPDVTSVQLPNE--DAQFDASNYDTDKGTHTSD---EQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED 117 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~ 117 (368)
...++++|||++|.+++. ++.+ ..+++..+..... ...... ....|.....+.+ .+.||.+.+++.+
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v--~v~d~~~~~~~~~~i~~~~~~~--v~~~p~~~~~~~~----~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSI--GIVDVAKGDYVEDVTAAAGCWS--VIPQPNRPRSFMT----ICGDGGLLTINLG 181 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEE--EEEETTTTEEEEEEGGGTTEEE--EEECTTSSSEEEE----EETTSSEEEEEEC
T ss_pred cceEEECCCCCEEEEECCCCCCeE--EEEECCCCcEEEEEecCCCcce--eEEcCCCCeeEEE----ECCCCcEEEEEEC
Confidence 345899999999988754 4556 3344443322111 001000 1123332222211 1346777666542
Q ss_pred --eeee------eccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec------ccc-cee
Q psy4579 118 --AQFD------ASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG------HTA-VVE 182 (368)
Q Consensus 118 --~~~~------~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------h~~-~v~ 182 (368)
++.. ..+.....++ .+.++|++ ..++..+.++.|.++|+...... ....+.- +.. ...
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVK-----VDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCE-----EEEEEESCCHHHHHTTCEEC
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCce-----ecccccccCccccccccccC
Confidence 2222 0111122222 34456777 66777778999999998754211 1111110 000 000
Q ss_pred cceeeEEeCCCCCeEEEeeC-----------CCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCC
Q psy4579 183 VRYGLSWNPSLNGYLLSASD-----------DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDE 251 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~ 251 (368)
-...++|+|+ ++.++.+.. .+.|.+||+.+. +.+..+..+. ...++|+| |+
T Consensus 255 g~~~~a~~~d-g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------~~v~~i~~~~--p~~ia~sp--------dg 316 (361)
T 2oiz_A 255 GYNLVGLHRA-SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------QRVARIPGRD--ALSMTIDQ--------QR 316 (361)
T ss_dssp CSSCEEEETT-TTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-------EEEEEEECTT--CCEEEEET--------TT
T ss_pred CeeEEEEecC-CCeEEEEEccCCCcccccCCCceEEEEECCCC-------cEEEEEecCC--eeEEEECC--------CC
Confidence 0013789998 566555432 358999999887 4456666665 78888875 11
Q ss_pred ccceEEEEeecCCcccccccccccCCCCCcccccCCCC--ceeeeeecCcccceeEEEEeCCCC
Q psy4579 252 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG--KIEIEIKINHEGEVNRARYMPQNP 313 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~ 313 (368)
.+++.. . . +.+.+||..++ ++...+. .+-.....++++|+|.
T Consensus 317 -~~l~v~--------------n---~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 -NLMLTL--------------D---G-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp -TEEEEE--------------C---S-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred -CEEEEe--------------C---C-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 122211 1 1 44566666677 6555543 4556678899999983
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.28 E-value=7.7e-05 Score=66.36 Aligned_cols=259 Identities=8% Similarity=-0.009 Sum_probs=127.5
Q ss_pred eeEecCCcccccCCCC----------ccccccCcceeeeccccCC--CC---Cc---EEEEEEecCCCccccccCCcccC
Q psy4579 45 TAQWLPDVTSVQLPNE----------DAQFDASNYDTDKGTHTSD--EQ---NH---LLIASVQLPNEDAQFDASNYDTD 106 (368)
Q Consensus 45 ~~~~~p~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~--~~---~~---~~i~~~~~~~~~~~~~~~~~~~~ 106 (368)
-++++||+++|.++.. ++.+ ..++...++.... .. .. ..-..+.+.+++..+......
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v--~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-- 145 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYV--EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-- 145 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeE--EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC--
Confidence 7999999999887752 3444 3344432221111 00 00 011234454444444433321
Q ss_pred CCCcccCCCCCeeeeecc-ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecce
Q psy4579 107 KGGNVQLPNEDAQFDASN-YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 185 (368)
.++.|.++| ........ ..... |+.+.|.++..+++.+.||.+.++|. +++.... ......+ ....++. .
T Consensus 146 ~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~--~ 216 (373)
T 2mad_H 146 AGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLL--T 216 (373)
T ss_pred CCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCccee--e
Confidence 246688888 65443333 33322 35566777677788889999999999 6532100 0000001 1112221 1
Q ss_pred eeEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee---cccccCCCCccceEEEEeec
Q psy4579 186 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQNHLLIASVQL 262 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~~d~~~~~~~~~~~~ 262 (368)
...+.++++.++++ +..+.+.+.|+...... ....+.-.........|.|. .++. +. ...++++.....
T Consensus 217 ~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~-----v~~~~~~~~~~~~~~~~~p~g~~~~~~-s~-d~~~lyV~~~~~ 288 (373)
T 2mad_H 217 QPAQANKSGRIVWP-VYSGKILQADISAAGAT-----NKAPIDALSGGRKADTWRPGGWQQVAY-LK-SSDGIYLLTSEQ 288 (373)
T ss_pred cceeEecCCEEEEE-cCCceEEEEeccCCcce-----EeeeeeecCCcccccceecCceEeEEE-CC-CCCEEEEEeccC
Confidence 45667763443443 47889999998754210 01111111111111222221 0110 11 112333322100
Q ss_pred CCcccccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEec-CCCeEEEEECCCC
Q psy4579 263 PNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKH 333 (368)
Q Consensus 263 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs-~Dg~i~iwd~~~~ 333 (368)
... ......+.+..+|..+++....+..++ ....++|+|++..+++++. .++.|.++|....
T Consensus 289 ~~~-------~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 289 SAW-------KLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred Ccc-------cccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 000 000112346667777777777665433 5889999999963565666 5899999999763
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.26 E-value=0.0003 Score=59.93 Aligned_cols=177 Identities=8% Similarity=0.008 Sum_probs=101.1
Q ss_pred CCcccCCCCCeeeee-ccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 108 GGNVQLPNEDAQFDA-SNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
++.|..++.+++... ....+...+.++++.+++ .++++...++.|..+|.. +.. ....+......+ .+
T Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~------~~~~~~~~~~~~---~~ 108 (300)
T 2qc5_A 40 ANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF------TEYPLPQPDSGP---YG 108 (300)
T ss_dssp TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE------EEEECSSTTCCE---EE
T ss_pred CCeEEEECCCCceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe------EEecCCCCCCCC---cc
Confidence 566777776643322 122334678999999998 777777778889999977 321 011112122334 38
Q ss_pred eEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcc
Q psy4579 187 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNED 266 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (368)
+++.++ +.+.++...++.|..+|.. +.. . ...+......+..+++.+ + ..+|+...
T Consensus 109 i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~-----~-~~~~~~~~~~~~~i~~d~--------~--g~l~v~~~------ 164 (300)
T 2qc5_A 109 ITEGLN-GDIWFTQLNGDRIGKLTAD-GTI-----Y-EYDLPNKGSYPAFITLGS--------D--NALWFTEN------ 164 (300)
T ss_dssp EEECST-TCEEEEETTTTEEEEECTT-SCE-----E-EEECSSTTCCEEEEEECT--------T--SSEEEEET------
T ss_pred ceECCC-CCEEEEccCCCeEEEECCC-CCE-----E-EccCCCCCCCceeEEECC--------C--CCEEEEec------
Confidence 999987 7887777778899999976 321 0 111121233455555542 1 12444321
Q ss_pred cccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 267 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
..+.+..++. +++........+...+..+++.+++ .+.++....+.|.+||..
T Consensus 165 ----------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 165 ----------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp ----------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT
T ss_pred ----------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC
Confidence 0111222222 2222221111344568899999998 677676677889999973
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.22 E-value=5.4e-05 Score=66.01 Aligned_cols=226 Identities=9% Similarity=0.113 Sum_probs=108.0
Q ss_pred eeEecCCcc-cccCCCCccccccCcceeeeccccC-CCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeeee
Q psy4579 45 TAQWLPDVT-SVQLPNEDAQFDASNYDTDKGTHTS-DEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDA 122 (368)
Q Consensus 45 ~~~~~p~~~-~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~ 122 (368)
...|+|++. .+.+...++.+ +.++...+.... .... .+..+.+.+++..+.+. .+| |.+|+.++....
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i--~~~d~~~~~~~~~~~~~--~v~~i~~~~dg~l~v~~-----~~g-l~~~d~~~g~~~ 122 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILEREL--HELHLASGRKTVHALPF--MGSALAKISDSKQLIAS-----DDG-LFLRDTATGVLT 122 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEE--EEEETTTTEEEEEECSS--CEEEEEEEETTEEEEEE-----TTE-EEEEETTTCCEE
T ss_pred CCeEeCCCCEEEEEECCCCEE--EEEECCCCcEEEEECCC--cceEEEEeCCCeEEEEE-----CCC-EEEEECCCCcEE
Confidence 468999754 44445555555 444433332111 1111 24444443333332222 133 666775432222
Q ss_pred cccc-----CCCCceeeEecCCCCCeeEEEeCC----CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCC
Q psy4579 123 SNYD-----TDKGGYGLSWNPSLNGYLLSASDD----HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193 (368)
Q Consensus 123 ~~~~-----h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~ 193 (368)
.+.. ....+++++++|+| +++++...+ +...||.+.++. ...+..+.... ..++|+|+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~--------~~~~~~~~~~~---~~i~~s~d- 189 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK--------VTKLFADISIP---NSICFSPD- 189 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE--------EEEEEEEESSE---EEEEECTT-
T ss_pred EEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCc--------EEEeeCCCccc---CCeEEcCC-
Confidence 1111 12358899999998 666654321 234444444321 12222222233 38999998
Q ss_pred CCeE-EEeeCCCcEEEEECC--CC-CCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCccccc
Q psy4579 194 NGYL-LSASDDHTICLWDIN--AT-PKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQF 269 (368)
Q Consensus 194 ~~~l-~s~s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 269 (368)
++.+ ++.+.++.|.+||+. ++ ....+ .....+.........+++.+ ...+|+...
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~~~~~~~~p~gi~~d~----------~G~lwva~~--------- 248 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFIDSTGIKGGMDGSVCDA----------EGHIWNARW--------- 248 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEECTTSSSEEEEEEECT----------TSCEEEEEE---------
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCc--eEEEECCCCCCCCCeeEECC----------CCCEEEEEe---------
Confidence 6654 555667899999986 33 11100 01111111122233333321 124555432
Q ss_pred ccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEe-CCCCcEEEEecCCC
Q psy4579 270 DASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYM-PQNPCVIATKTPSS 323 (368)
Q Consensus 270 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~lasgs~Dg 323 (368)
..+.+..++. +++....+. .+...+.+++|. |++..++++...++
T Consensus 249 -------~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 249 -------GEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp -------TTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred -------CCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 0112333333 344444443 345679999998 88766766655553
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.21 E-value=4.5e-05 Score=67.54 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=62.7
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEe----------CCCcEEEEeCCCCCCCCcccccceeeecc
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSAS----------DDHTICLWDINATPKENRVIDAKTIFTGH 177 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~h 177 (368)
++.|.+.|.....+.....-...-. +.++|+| +.+.+++ .++.|.+||..+.+ ....+.-.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-------v~~~I~v~ 128 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLL-------PTADIELP 128 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCE-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEECCCCCc-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCe-------EEEEEECC
Confidence 5688888876544333333222224 9999999 6665554 36789999998874 23333211
Q ss_pred c-------cceecceeeEEeCCCCCeEEEeeC--CCcEEEEECCCCC
Q psy4579 178 T-------AVVEVRYGLSWNPSLNGYLLSASD--DHTICLWDINATP 215 (368)
Q Consensus 178 ~-------~~v~~~~~i~~~p~~~~~l~s~s~--dg~i~iwd~~~~~ 215 (368)
. ... ..+.++|+ +.+++.+.. ++.|.++|+.+.+
T Consensus 129 ~g~r~~~g~~P---~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 129 DAPRFLVGTYP---WMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp TCCCCCBSCCG---GGEEECTT-SSEEEEEECSSSCEEEEEETTTTE
T ss_pred CccccccCCCC---ceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCc
Confidence 1 112 38999999 787777653 6899999998874
No 213
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.17 E-value=6.8e-05 Score=70.45 Aligned_cols=233 Identities=12% Similarity=0.044 Sum_probs=123.0
Q ss_pred CCcccccCCCCccccccCcceeeeccccCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCC---eeeeecccc
Q psy4579 50 PDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNED---AQFDASNYD 126 (368)
Q Consensus 50 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~---~~~~~~~~~ 126 (368)
|....+++...++.+ ..++..++........-.....+.+.++...+... +.+|.|.+||.. .+.+....
T Consensus 165 ~~~~~~V~~~~~~~V--~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~----~~dg~V~viD~~~~t~~~v~~i~- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQI--ALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI----GRDGKVNMIDLWMKEPTTVAEIK- 237 (567)
T ss_dssp GGGEEEEEETTTTEE--EEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE----ETTSEEEEEETTSSSCCEEEEEE-
T ss_pred CCceEEEEeCCCCeE--EEEECCCCeEEEEEeCCCCccceEECCCCCEEEEE----cCCCeEEEEECCCCCCcEeEEEe-
Confidence 334455556667766 44444433222211000012245565544433332 247889999983 33333332
Q ss_pred CCCCceeeEec----CCCCCeeEEEe-CCCcEEEEeCCCCCCCCcccccceeeec----------ccc-ceecceeeEEe
Q psy4579 127 TDKGGYGLSWN----PSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTG----------HTA-VVEVRYGLSWN 190 (368)
Q Consensus 127 h~~~v~~l~~s----p~~~~~lasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~----------h~~-~v~~~~~i~~~ 190 (368)
.......++|+ |+| +++++++ .+++|.++|..+.+ ++..+.. |.. .+. .+..+
T Consensus 238 ~G~~P~~ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva---~i~~s 306 (567)
T 1qks_A 238 IGSEARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVA---AILAS 306 (567)
T ss_dssp CCSEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEE---EEEEC
T ss_pred cCCCCceeEEccccCCCC-CEEEEEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceE---EEEEc
Confidence 23346789999 698 6666655 56999999987754 3333321 112 343 77788
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccc
Q psy4579 191 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFD 270 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 270 (368)
++...++++...+|.|.++|....... ....+. .......+.|++ ...++++..
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~-----~v~~i~-~~~~~~d~~~~p---------dgr~~~va~----------- 360 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNL-----KTTEIS-AERFLHDGGLDG---------SHRYFITAA----------- 360 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEE-----EEEEEE-CCSSEEEEEECT---------TSCEEEEEE-----------
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccc-----eeeeee-ccccccCceECC---------CCCEEEEEe-----------
Confidence 875556777778899999998764210 011111 122233444543 011222221
Q ss_pred cccccCCCCCcccccCCCCceeeeeec----CcccceeEEEEeCCCCcEEEEec-CCCeEEEEECCC
Q psy4579 271 ASNYDTDKGDFGGFGSVSGKIEIEIKI----NHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTK 332 (368)
Q Consensus 271 ~~~~d~~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~~p~~~~~lasgs-~Dg~i~iwd~~~ 332 (368)
. ..+.+..+|..++++...+.. .|.+....+ ++|++..+.+++. .+++|.++|...
T Consensus 361 ---~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 361 ---N--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp ---G--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ---C--CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 1 112234445555555444433 354422222 6888546766654 568999999875
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.10 E-value=0.00022 Score=62.06 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=101.9
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec----c-cccee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG----H-TAVVE 182 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----h-~~~v~ 182 (368)
++.|..|+.++..... ......+.++.|+|+| +++++. .++ |.+||..++.. ..+.. . ...+
T Consensus 70 ~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~dg-~l~v~~-~~g-l~~~d~~~g~~--------~~~~~~~~~~~~~~~- 136 (326)
T 2ghs_A 70 ERELHELHLASGRKTV-HALPFMGSALAKISDS-KQLIAS-DDG-LFLRDTATGVL--------TLHAELESDLPGNRS- 136 (326)
T ss_dssp GTEEEEEETTTTEEEE-EECSSCEEEEEEEETT-EEEEEE-TTE-EEEEETTTCCE--------EEEECSSTTCTTEEE-
T ss_pred CCEEEEEECCCCcEEE-EECCCcceEEEEeCCC-eEEEEE-CCC-EEEEECCCCcE--------EEEeeCCCCCCCCCC-
Confidence 4667777765433222 2245679999999998 666654 444 88999876531 11211 1 1234
Q ss_pred cceeeEEeCCCCCeEEEeeC------CCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeee---cccccCCCCcc
Q psy4579 183 VRYGLSWNPSLNGYLLSASD------DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRL---ILGTHTSDEQN 253 (368)
Q Consensus 183 ~~~~i~~~p~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~~d~~~ 253 (368)
.+++++|+ +.+.++... .+.|..+| ++. ...+.......+.++|++. +..+...+ .
T Consensus 137 --~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~--------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~--~ 201 (326)
T 2ghs_A 137 --NDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGK--------VTKLFADISIPNSICFSPDGTTGYFVDTKV--N 201 (326)
T ss_dssp --EEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTE--------EEEEEEEESSEEEEEECTTSCEEEEEETTT--C
T ss_pred --CCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCc--------EEEeeCCCcccCCeEEcCCCCEEEEEECCC--C
Confidence 38999998 776665432 24455555 221 1122222233456666531 11111110 1
Q ss_pred ceEEEEeecCCcccccccccccCCCC-CcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 254 HLLIASVQLPNEDAQFDASNYDTDKG-DFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.++.... +...| .+. ..+....+. ........+++.++| ++.++...++.|.+||..
T Consensus 202 ~I~~~d~--------------~~~~Gl~~~-----~~~~~~~~~-~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~- 259 (326)
T 2ghs_A 202 RLMRVPL--------------DARTGLPTG-----KAEVFIDST-GIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD- 259 (326)
T ss_dssp EEEEEEB--------------CTTTCCBSS-----CCEEEEECT-TSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-
T ss_pred EEEEEEc--------------ccccCCccc-----CceEEEECC-CCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-
Confidence 1221111 00011 100 001111111 233456789999999 566565567889999874
Q ss_pred CCCCCCCCCCCCCceeeecccCceeeecce-ee
Q psy4579 333 HPSKPDPNGECHPDLRLRGHQKEGLIEGTY-NC 364 (368)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~w~-p~ 364 (368)
...+..+..+...+++++|+ |+
T Consensus 260 ----------g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 260 ----------GNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp ----------CCEEEEEECSCSBEEEEEEESTT
T ss_pred ----------CCEEEEEECCCCCcEEEEEecCC
Confidence 22233445556678899987 64
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.92 E-value=0.00086 Score=59.54 Aligned_cols=92 Identities=10% Similarity=-0.127 Sum_probs=57.9
Q ss_pred cccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEe----------CCCcEEEEeCCCCCCCCcccccceeeecc--
Q psy4579 110 NVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSAS----------DDHTICLWDINATPKENRVIDAKTIFTGH-- 177 (368)
Q Consensus 110 ~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~h-- 177 (368)
.|.++|.....+.....-...- .+.++|+| +.+..+. .++.|.++|..+.+. ...+.-.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-------~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-------IADIELPDA 118 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcE-------EEEEECCCc
Confidence 5667776543222222222222 89999999 7777765 367899999987542 2222111
Q ss_pred -----ccceecceeeEEeCCCCCeEEEeeC--CCcEEEEECCCCC
Q psy4579 178 -----TAVVEVRYGLSWNPSLNGYLLSASD--DHTICLWDINATP 215 (368)
Q Consensus 178 -----~~~v~~~~~i~~~p~~~~~l~s~s~--dg~i~iwd~~~~~ 215 (368)
.... ..+.|+|+ +++|+.++. ++.|.++| .++.
T Consensus 119 ~~~~~g~~p---~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~ 158 (373)
T 2mad_H 119 PRFDVGPYS---WMNANTPN-NADLLFFQFAAGPAVGLVV-QGGS 158 (373)
T ss_pred cccccCCCc---cceEECCC-CCEEEEEecCCCCeEEEEE-CCCC
Confidence 1112 28899999 888887764 57899999 7763
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.91 E-value=0.00017 Score=62.12 Aligned_cols=149 Identities=10% Similarity=0.074 Sum_probs=79.6
Q ss_pred eeeEecCCcc-cccCCCCccccccCcceeeeccc-cCCCCCcEEEEEEecCCCccccccCCcccCCCCcccCCCCCeeee
Q psy4579 44 LTAQWLPDVT-SVQLPNEDAQFDASNYDTDKGTH-TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFD 121 (368)
Q Consensus 44 ~~~~~~p~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~ 121 (368)
-...|+|+++ .+.++..++.+ +.|+.. |.. ..... ...+..+.+.+.+..+.+ . ..++.|..++.+++..
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i--~~~~~~-g~~~~~~~~-~~~~~gl~~d~dG~l~v~-~---~~~~~v~~~~~~g~~~ 119 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRV--LGWRED-GTVDVLLDA-TAFTNGNAVDAQQRLVHC-E---HGRRAITRSDADGQAH 119 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEE--EEEETT-SCEEEEEES-CSCEEEEEECTTSCEEEE-E---TTTTEEEEECTTSCEE
T ss_pred cCCeEeCCCCEEEEEECCCCEE--EEEeCC-CCEEEEeCC-CCccceeeECCCCCEEEE-E---CCCCEEEEECCCCCEE
Confidence 3588999998 44555555655 333331 211 11100 112334445443332222 1 1245677777665432
Q ss_pred ecc---cc-CCCCceeeEecCCCCCeeEE----EeC-------------CCcEEEEeCCCCCCCCcccccceeeeccccc
Q psy4579 122 ASN---YD-TDKGGYGLSWNPSLNGYLLS----ASD-------------DHTICLWDINATPKENRVIDAKTIFTGHTAV 180 (368)
Q Consensus 122 ~~~---~~-h~~~v~~l~~sp~~~~~las----g~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 180 (368)
... .+ ....++++.++|+| ++++| |.. .+.|..+|..++.. ..+. ....
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--------~~~~-~~~~ 189 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--------QRMA-DLDH 189 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--------EEEE-EESS
T ss_pred EEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--------EEEe-cCCC
Confidence 111 11 12357789999999 78876 432 24566676655431 2222 2223
Q ss_pred eecceeeEEeCCCCCeEEEeeCC------CcEEEEECCCC
Q psy4579 181 VEVRYGLSWNPSLNGYLLSASDD------HTICLWDINAT 214 (368)
Q Consensus 181 v~~~~~i~~~p~~~~~l~s~s~d------g~i~iwd~~~~ 214 (368)
. ..++|+|+ +..|+.+... +.|.+||+...
T Consensus 190 p---~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 190 P---NGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp E---EEEEECTT-SSEEEEEECCC---CCCEEEEEEEETT
T ss_pred C---cceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 3 28999998 7766666554 78999998654
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.86 E-value=2.9e-05 Score=68.69 Aligned_cols=89 Identities=10% Similarity=-0.173 Sum_probs=58.9
Q ss_pred cccCCCCCe-eeeeccccCCCCceeeEecCCCCCeeEEEe----------CCCcEEEEeCCCCCCCCcccccceeeecc-
Q psy4579 110 NVQLPNEDA-QFDASNYDTDKGGYGLSWNPSLNGYLLSAS----------DDHTICLWDINATPKENRVIDAKTIFTGH- 177 (368)
Q Consensus 110 ~i~i~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~h- 177 (368)
.|.+.|.+. +.+..+.--..+ .+.++|++ +.+.++. .++.|.+||..+.+ ....+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETT
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCC
Confidence 566777664 333333222234 79999999 7776665 47899999999875 34444322
Q ss_pred -------ccceecceeeEEeCCCCCeEEEeeC--CCcEEE--EECCC
Q psy4579 178 -------TAVVEVRYGLSWNPSLNGYLLSASD--DHTICL--WDINA 213 (368)
Q Consensus 178 -------~~~v~~~~~i~~~p~~~~~l~s~s~--dg~i~i--wd~~~ 213 (368)
..+ ..++++|+ +.+++.+.. +..|.+ +|+.+
T Consensus 117 ~~~~~~g~~P----~~ia~SpD-Gk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 117 APRFSVGPRV----HIIGNCAS-SACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp SCSCCBSCCT----TSEEECTT-SSCEEEEECSSSCEEEEEETTTEE
T ss_pred ccccccCCCc----ceEEEcCC-CCEEEEEccCCCCeEEEEEEchhh
Confidence 122 38999999 777777764 457888 88855
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.84 E-value=0.00035 Score=62.95 Aligned_cols=94 Identities=10% Similarity=-0.072 Sum_probs=63.1
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEe----------CCCcEEEEeCCCCCCCCcccccceeeecc-
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSAS----------DDHTICLWDINATPKENRVIDAKTIFTGH- 177 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~h- 177 (368)
+.|.+.|.....+...+.-...- .+.++|++ +.+..+. .++.|.++|..+.+ ....+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~-------vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFL-------PIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETT
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCc-------EEEEEECCC
Confidence 78888887754433333222222 79999999 6666665 46789999998874 23333211
Q ss_pred ------ccceecceeeEEeCCCCCeEEEeeC--CCcEEEEECCCCC
Q psy4579 178 ------TAVVEVRYGLSWNPSLNGYLLSASD--DHTICLWDINATP 215 (368)
Q Consensus 178 ------~~~v~~~~~i~~~p~~~~~l~s~s~--dg~i~iwd~~~~~ 215 (368)
.... ..+.++|+ +.+++.+.. ++.|.+.|+.+.+
T Consensus 170 ~~r~~~g~~P---~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 170 APRFLVGTYQ---WMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp CCCCCBSCCG---GGSEECTT-SSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccccCCCc---ceEEEcCC-CCEEEEEecCCCCeEEEEECCCCe
Confidence 1112 38999999 888887764 5789999998874
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.81 E-value=8.1e-06 Score=72.65 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=49.2
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccc-eecce
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VEVRY 185 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~ 185 (368)
.||.|..||............ +.+.+..+.+++ ..+++++.||.|+.||..+++. ...+..+... +. .
T Consensus 17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~-------~w~~~~~~~~~~~--~ 85 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEG-------LTKLPFTIPELVQ--A 85 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CC-------SEECSCCHHHHHT--T
T ss_pred CCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCce-------eeeeeccCccccc--c
Confidence 477888888654333322222 566666667776 7888889999999999987752 2333333211 11 0
Q ss_pred eeEEeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 186 GLSWNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
+.... . +..+++|+.|+.|..||.++++
T Consensus 86 sp~~~-~-~~~v~~g~~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 86 SPCRS-S-DGILYMGKKQDIWYVIDLLTGE 113 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC---
T ss_pred CceEe-c-CCEEEEEeCCCEEEEEECCCCc
Confidence 11111 2 5578888999999999999874
No 220
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.75 E-value=0.0014 Score=54.86 Aligned_cols=151 Identities=9% Similarity=0.025 Sum_probs=89.0
Q ss_pred eeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECC
Q psy4579 133 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 133 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
.+++. +..+.++.-.++.+.++|..+.+ .+..+..- .+. ....+++ +..++.+..++.|.+.|..
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~-------v~~~i~~g-~~~----g~glt~D-g~~l~vs~gs~~l~viD~~ 134 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLS-------NIKNFTHQ-MKD----GWGLATD-GKILYGSDGTSILYEIDPH 134 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTE-------EEEEEECC-SSS----CCEEEEC-SSSEEEECSSSEEEEECTT
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCc-------EEEEEECC-CCC----eEEEEEC-CCEEEEECCCCeEEEEECC
Confidence 34444 42566666678999999998764 33444322 122 3334556 5555555578899999998
Q ss_pred CCCCCCccccceeeeec--ccc---cEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCC
Q psy4579 213 ATPKENRVIDAKTIFTG--HTA---VVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV 287 (368)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--~~~---~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 287 (368)
+.. ....+.- ... ..+.+.|.. .++|... + ..+.+...|..
T Consensus 135 t~~-------v~~~I~Vg~~~~p~~~~nele~~d-----------g~lyvn~--------------~--~~~~V~vID~~ 180 (266)
T 2iwa_A 135 TFK-------LIKKHNVKYNGHRVIRLNELEYIN-----------GEVWANI--------------W--QTDCIARISAK 180 (266)
T ss_dssp TCC-------EEEEEECEETTEECCCEEEEEEET-----------TEEEEEE--------------T--TSSEEEEEETT
T ss_pred CCc-------EEEEEEECCCCcccccceeEEEEC-----------CEEEEec--------------C--CCCeEEEEECC
Confidence 763 2232221 111 133333321 1233221 1 12335556666
Q ss_pred CCceeeeeecCc------------ccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 288 SGKIEIEIKINH------------EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 288 ~~~~~~~~~~~h------------~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++++...+..+. ....+.++|+|++..+++|+...+++.+.++..
T Consensus 181 tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 181 DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 677666554320 135589999999989999999999999999875
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.66 E-value=0.0021 Score=55.17 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcE
Q psy4579 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206 (368)
Q Consensus 127 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i 206 (368)
.........|+|++..+++++..++.|..|+.. +. ...+..+...+. ++++.++ +.++++...++.|
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--------~~~~~~~~~~~~---gl~~d~d-G~l~v~~~~~~~v 109 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--------VDVLLDATAFTN---GNAVDAQ-QRLVHCEHGRRAI 109 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--------EEEEEESCSCEE---EEEECTT-SCEEEEETTTTEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--------EEEEeCCCCccc---eeeECCC-CCEEEEECCCCEE
Confidence 444567789999983377888889999999874 32 234444455554 9999998 7766665566889
Q ss_pred EEEECC
Q psy4579 207 CLWDIN 212 (368)
Q Consensus 207 ~iwd~~ 212 (368)
.+||..
T Consensus 110 ~~~~~~ 115 (305)
T 3dr2_A 110 TRSDAD 115 (305)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999975
No 222
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.58 E-value=0.0074 Score=50.11 Aligned_cols=164 Identities=9% Similarity=0.065 Sum_probs=92.0
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
.+|.|..+|.+...+.... -..........+.+..+.+....++.+.++|..+.+ .+..+...... +.
T Consensus 73 ~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~-------~~~ti~~~~eG----wG 140 (268)
T 3nok_A 73 HQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ-------RERTTRYSGEG----WG 140 (268)
T ss_dssp TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-------EEEEEECSSCC----CC
T ss_pred CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-------EEEEEeCCCce----eE
Confidence 4567888888754333322 334444433333443666666789999999998864 34445432211 36
Q ss_pred eEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeec--ccc---cEeEEEEeeecccccCCCCccceEEEEee
Q psy4579 187 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTA---VVEDYSIHRLILGTHTSDEQNHLLIASVQ 261 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~---~v~~v~~~~~~~~~~~~d~~~~~~~~~~~ 261 (368)
+++ + +..|+.+..++.|.++|..+.. ....+.- +.. .++.+.|.. .++|+.
T Consensus 141 Lt~--D-g~~L~vSdGs~~l~~iDp~T~~-------v~~~I~V~~~g~~v~~lNeLe~~d-----------G~lyan--- 196 (268)
T 3nok_A 141 LCY--W-NGKLVRSDGGTMLTFHEPDGFA-------LVGAVQVKLRGQPVELINELECAN-----------GVIYAN--- 196 (268)
T ss_dssp EEE--E-TTEEEEECSSSEEEEECTTTCC-------EEEEEECEETTEECCCEEEEEEET-----------TEEEEE---
T ss_pred Eec--C-CCEEEEECCCCEEEEEcCCCCe-------EEEEEEeCCCCcccccccccEEeC-----------CEEEEE---
Confidence 664 4 5566665668999999998863 2233221 111 223344421 123321
Q ss_pred cCCcccccccccccCCCCCcccccCCCCceeeeeecC------------cccceeEEEEeCCCCcEEEEe
Q psy4579 262 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN------------HEGEVNRARYMPQNPCVIATK 319 (368)
Q Consensus 262 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------------h~~~i~~~~~~p~~~~~lasg 319 (368)
.|. +..+...|..++++...+..+ -..-.+.|+++|++..+++||
T Consensus 197 -----------vw~--s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 -----------IWH--SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -----------ETT--CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -----------ECC--CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 121 123455555666665544321 113559999999988999887
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.53 E-value=0.0027 Score=55.51 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred CCCCceeeEecCCCCCeeEEEeC-----CCcEEEEeCCCCCCCCcccccceeeec------cccceecceeeEEeCCCCC
Q psy4579 127 TDKGGYGLSWNPSLNGYLLSASD-----DHTICLWDINATPKENRVIDAKTIFTG------HTAVVEVRYGLSWNPSLNG 195 (368)
Q Consensus 127 h~~~v~~l~~sp~~~~~lasg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~i~~~p~~~~ 195 (368)
|-..+.++++++++ +++++-.. ++.|.+||+.+++ ....+.. +...+. .+++.|+++.
T Consensus 65 ~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~-------~~~~~~~~~~~~~~~~~~~---~v~vd~~~g~ 133 (343)
T 2qe8_A 65 TFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ-------LSRVIYLPPPITLSNSFVN---DLAVDLIHNF 133 (343)
T ss_dssp CCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE-------EEEEEECCTTTSCTTCCCC---EEEEETTTTE
T ss_pred ceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe-------EEEEEECChhhcccccccc---eEEEecCCCE
Confidence 55678999999998 76666543 5789999998763 1222221 122333 8899986344
Q ss_pred eEEEee---CCCcEEEEECCCC
Q psy4579 196 YLLSAS---DDHTICLWDINAT 214 (368)
Q Consensus 196 ~l~s~s---~dg~i~iwd~~~~ 214 (368)
.+++.+ .++.|.+||+.++
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTC
T ss_pred EEEEcCccCCCCeEEEEECCCC
Confidence 556655 6889999999765
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.50 E-value=0.0023 Score=56.05 Aligned_cols=118 Identities=8% Similarity=-0.019 Sum_probs=62.5
Q ss_pred ceeeEecCCcccccCCC--CccccccCcceeeecccc------CC-CCCcEEEEEEecCCCccccccCCc-ccCCCCccc
Q psy4579 43 SLTAQWLPDVTSVQLPN--EDAQFDASNYDTDKGTHT------SD-EQNHLLIASVQLPNEDAQFDASNY-DTDKGGNVQ 112 (368)
Q Consensus 43 ~~~~~~~p~~~~l~~~~--~~~~~~~~~~~~~~~~~~------~~-~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~g~i~ 112 (368)
...++++|+|+.+++.. .++.+.++..+ .|... .. ......+..+.+.+.+..+.+..- ....++.|.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 44599999999887742 22323334333 22211 01 111234556666544332221110 000146788
Q ss_pred CCCCC-eeeeeccc------cCCCCceeeEecCCCCCeeEEEe---CCCcEEEEeCCCCC
Q psy4579 113 LPNED-AQFDASNY------DTDKGGYGLSWNPSLNGYLLSAS---DDHTICLWDINATP 162 (368)
Q Consensus 113 i~~~~-~~~~~~~~------~h~~~v~~l~~sp~~~~~lasg~---~dg~v~iwd~~~~~ 162 (368)
+|+.. ++...... .+...+..++++|++...+++.. .++.|.+||+.++.
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 88875 33232221 23345689999986525566665 68899999987653
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.46 E-value=0.0061 Score=50.04 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=53.3
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeE
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLS 188 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~ 188 (368)
..|...|.....+.....-..........+.+..+.+....++.+.++|..+.+ .+.++...... +.++
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~-------~~~ti~~~~~G----wglt 111 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT-------PRARFRYPGEG----WALT 111 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE-------EEEEEECSSCC----CEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc-------EEEEEeCCCCc----eEEe
Confidence 356666665433333223233333333333343566666789999999998864 34455432222 3565
Q ss_pred EeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 189 WNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 189 ~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
++ +..|+.+..++.|.++|..+..
T Consensus 112 --~d-g~~L~vSdgs~~l~~iDp~t~~ 135 (243)
T 3mbr_X 112 --SD-DSHLYMSDGTAVIRKLDPDTLQ 135 (243)
T ss_dssp --EC-SSCEEEECSSSEEEEECTTTCC
T ss_pred --eC-CCEEEEECCCCeEEEEeCCCCe
Confidence 45 4444444558899999998863
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.40 E-value=0.026 Score=47.11 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=49.5
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLW 209 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iw 209 (368)
....++|++++..++++-..++.|..++...... .......-.... .+++.|+++.+.++-...+.|.++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-------~~~~~~~~~~p~---~ia~d~~~~~lyv~d~~~~~I~~~ 106 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-------TTIIRQDLGSPE---GIALDHLGRTIFWTDSQLDRIEVA 106 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------EEEECTTCCCEE---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-------EEEEECCCCCcc---EEEEEecCCeEEEEECCCCEEEEE
Confidence 4678999997635666666788999999876431 122221112232 899998735555666667899999
Q ss_pred ECCCC
Q psy4579 210 DINAT 214 (368)
Q Consensus 210 d~~~~ 214 (368)
|+...
T Consensus 107 ~~~g~ 111 (267)
T 1npe_A 107 KMDGT 111 (267)
T ss_dssp ETTSC
T ss_pred EcCCC
Confidence 98653
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=65.40 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=39.3
Q ss_pred CeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 142 ~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
..+++++.||.|+.||..+++ ....+.. +.+. +..+..+ +..+++++.||.|..||..+++
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~---s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVL---QVPTHVE-EPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSC---CCC------CCEEECTTTCCEEEC-----C
T ss_pred CEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCce---ecceEcC-CCEEEEeCCCCEEEEEECCCCc
Confidence 789999999999999999885 3344544 3442 4445555 6688888999999999998774
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.39 E-value=0.0094 Score=49.43 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=54.8
Q ss_pred cccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEE
Q psy4579 110 NVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSW 189 (368)
Q Consensus 110 ~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~ 189 (368)
.|...|.....+.....-..........+.+..+.+....++.+.++|..+.+ .+..+.-.... +.++
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-------~~~ti~~~~eG----~glt- 133 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-------QVRSFNYDGEG----WGLT- 133 (262)
T ss_dssp EEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-------EEEEEECSSCC----CCEE-
T ss_pred eEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-------EEEEEECCCCc----eEEe-
Confidence 67777776533333333334444433344453555666678999999998875 34445432211 2555
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 190 NPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 190 ~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
++ +..|+.+..++.|.++|..+..
T Consensus 134 -~d-g~~L~~SdGs~~i~~iDp~T~~ 157 (262)
T 3nol_A 134 -HN-DQYLIMSDGTPVLRFLDPESLT 157 (262)
T ss_dssp -EC-SSCEEECCSSSEEEEECTTTCS
T ss_pred -cC-CCEEEEECCCCeEEEEcCCCCe
Confidence 45 4555555557889999998863
No 229
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.33 E-value=0.019 Score=47.54 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=88.8
Q ss_pred eccccCCCCc--eeeEecCCCCCeeEEEeCCC--cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeE
Q psy4579 122 ASNYDTDKGG--YGLSWNPSLNGYLLSASDDH--TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYL 197 (368)
Q Consensus 122 ~~~~~h~~~v--~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l 197 (368)
...+.|...- ..|.|+ ++ .++.+.+.+| .|+++|+.+++. ...+........ -.++. .++.+.
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv-------~~~~~l~~~~Fg--eGit~--~g~~ly 100 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT-------LQQIELGKRYFG--EGISD--WKDKIV 100 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE-------EEEEECCTTCCE--EEEEE--ETTEEE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE-------EEEEecCCccce--eEEEE--eCCEEE
Confidence 3445676554 789998 66 7888888876 899999998852 333332222210 03444 324444
Q ss_pred EEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCC
Q psy4579 198 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD 277 (368)
Q Consensus 198 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~ 277 (368)
+..-.++.+.+||..+.. .+..+.... .-..+++.. ..+++. |.
T Consensus 101 ~ltw~~~~v~v~D~~t~~-------~~~ti~~~~-eG~glt~dg-----------~~L~~S----------------dG- 144 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLR-------QVRSFNYDG-EGWGLTHND-----------QYLIMS----------------DG- 144 (262)
T ss_dssp EEESSSSEEEEEETTTCC-------EEEEEECSS-CCCCEEECS-----------SCEEEC----------------CS-
T ss_pred EEEeeCCEEEEEECccCc-------EEEEEECCC-CceEEecCC-----------CEEEEE----------------CC-
Confidence 444568899999998863 344443211 112233321 111111 00
Q ss_pred CCCcccccCCCCceeeeeecC---cc-cceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKIEIEIKIN---HE-GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~---h~-~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++.+..+|..+.+....+..+ +. ..++.+.|. +| .+.|..-.+..|.+.|.++
T Consensus 145 s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 145 TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTT
T ss_pred CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCC
Confidence 122333444445554444332 12 345667887 66 6887766788999999875
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.28 E-value=0.059 Score=44.96 Aligned_cols=160 Identities=10% Similarity=0.003 Sum_probs=91.2
Q ss_pred eccccCCCC--ceeeEecCCCCCeeEEEeC--CCcEEEEeCCCCCCCCcccccceeee--ccccceecceeeEEeCCCCC
Q psy4579 122 ASNYDTDKG--GYGLSWNPSLNGYLLSASD--DHTICLWDINATPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLNG 195 (368)
Q Consensus 122 ~~~~~h~~~--v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~~ 195 (368)
...+.|... ...+.|+|++ .++++.+. ++.|++.|+.+++ ....+. .+.... .+++.. +.
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~fge----Gi~~~g--~~ 77 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYFGE----GLTLLN--EK 77 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCCEE----EEEEET--TE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcceE----EEEEeC--CE
Confidence 344466654 5789999987 66666554 6899999999875 233332 222221 455542 45
Q ss_pred eEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCccccccccccc
Q psy4579 196 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD 275 (368)
Q Consensus 196 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d 275 (368)
+.++.-.++.+.++|..+. +.+..+..-...-..++... .++++..
T Consensus 78 lyv~t~~~~~v~viD~~t~-------~v~~~i~~g~~~g~glt~Dg-----------~~l~vs~---------------- 123 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTL-------SNIKNFTHQMKDGWGLATDG-----------KILYGSD---------------- 123 (266)
T ss_dssp EEEEETTCSEEEEEETTTT-------EEEEEEECCSSSCCEEEECS-----------SSEEEEC----------------
T ss_pred EEEEEecCCEEEEEECCCC-------cEEEEEECCCCCeEEEEECC-----------CEEEEEC----------------
Confidence 5555567889999999876 23343321101111233221 1122111
Q ss_pred CCCCCcccccCCCCceeeeeecCcc----cceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 276 TDKGDFGGFGSVSGKIEIEIKINHE----GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.++.+..+|..+.+....+..+.. ..++.+.|. ++ .+++....++.|.+.|..+
T Consensus 124 -gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 124 -GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKD 181 (266)
T ss_dssp -SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTT
T ss_pred -CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCC
Confidence 122344444555555555443211 236788888 66 6887877789999999975
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.15 E-value=0.073 Score=43.63 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=86.9
Q ss_pred ccccCCCC--ceeeEecCCCCCeeEEEeCCC--cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEE
Q psy4579 123 SNYDTDKG--GYGLSWNPSLNGYLLSASDDH--TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 123 ~~~~h~~~--v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
..+.|+.. ...|.|++ + .++.+.+.+| .|+.+|+.+++. .....-...... -.++... +.+.+
T Consensus 13 ~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv-------~~~~~l~~~~fg--eGi~~~~--~~ly~ 79 (243)
T 3mbr_X 13 KRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRI-------LQRAEVPPPYFG--AGIVAWR--DRLIQ 79 (243)
T ss_dssp EEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCE-------EEEEECCTTCCE--EEEEEET--TEEEE
T ss_pred EEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCE-------EEEEeCCCCcce--eEEEEeC--CEEEE
Confidence 34467654 56899987 4 6777777764 899999998852 333332222210 1444432 45555
Q ss_pred EeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCC
Q psy4579 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 278 (368)
Q Consensus 199 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 278 (368)
..-.++.+.+||..+. +.+.++..... -..++... .++++.. .+
T Consensus 80 ltw~~~~v~v~D~~tl-------~~~~ti~~~~~-Gwglt~dg-----------~~L~vSd-----------------gs 123 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATL-------TPRARFRYPGE-GWALTSDD-----------SHLYMSD-----------------GT 123 (243)
T ss_dssp EESSSSEEEEEETTTT-------EEEEEEECSSC-CCEEEECS-----------SCEEEEC-----------------SS
T ss_pred EEeeCCEEEEEECCcC-------cEEEEEeCCCC-ceEEeeCC-----------CEEEEEC-----------------CC
Confidence 5567899999999886 33444442211 12333321 1222111 01
Q ss_pred CCcccccCCCCceeeeeecC-cc---cceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 279 GDFGGFGSVSGKIEIEIKIN-HE---GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~-h~---~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+.+..+|..+.+....+..+ +. ..++.+.|. +| .++|..-.+..|.+.|.++
T Consensus 124 ~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 124 AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTT
T ss_pred CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCC
Confidence 22333444444444444322 11 245666766 55 5776665677888888865
No 232
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.10 E-value=0.067 Score=47.51 Aligned_cols=180 Identities=8% Similarity=-0.012 Sum_probs=93.6
Q ss_pred cccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeE
Q psy4579 110 NVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLS 188 (368)
Q Consensus 110 ~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~ 188 (368)
.|...++++.....+.........++|++.+..++.+-...+.|..+++..... ...+. +-..+. .++
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-------~~~~~~~~~~p~----gla 165 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-------EEVVSTGLESPG----GLA 165 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-------EEEECSSCSCCC----CEE
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-------EEEEeCCCCCcc----EEE
Confidence 344444444332233333445788999986535666666778899999876531 11122 112222 788
Q ss_pred EeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccc
Q psy4579 189 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ 268 (368)
Q Consensus 189 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 268 (368)
+.+..+.+.++-...+.|.+.++..... ...+...-..-+.++++|. ...++..... .
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~-------~~l~~~~l~~P~giavdp~---------~g~ly~td~~---~--- 223 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHR-------KVLLWQSLEKPRAIALHPM---------EGTIYWTDWG---N--- 223 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSC-------EEEECSSCSCEEEEEEETT---------TTEEEEEECS---S---
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCce-------EEeecCCCCCCcEEEEEcC---------CCeEEEeccC---C---
Confidence 8876455666666678888888765421 1112212233455666531 0112211100 0
Q ss_pred cccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 269 FDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 269 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+..+++. |.....+........+.++++|++..++.+-+..+.|..+|+..
T Consensus 224 ---------~~~I~r~~~d-G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 224 ---------TPRIEASSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp ---------SCEEEEEETT-SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred ---------CCEEEEEeCC-CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 0011111111 11111111122335688999987767887777788999999863
No 233
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.06 E-value=0.059 Score=44.69 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=90.8
Q ss_pred eeccccCCCC--ceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee-eccccceecceeeEEeCCCCCeE
Q psy4579 121 DASNYDTDKG--GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVEVRYGLSWNPSLNGYL 197 (368)
Q Consensus 121 ~~~~~~h~~~--v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~i~~~p~~~~~l 197 (368)
+...+.|... ...|.|+. + .++.+.+.+|.|+++|+++++. ...+ ...-... .++... +.+.
T Consensus 45 Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv-------~~~~l~~~~Fge----Git~~g--~~Ly 109 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQP-------VWMERLGNIFAE----GLASDG--ERLY 109 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSC-------SEEEECTTCCEE----EEEECS--SCEE
T ss_pred EEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcE-------EeEECCCCccee----EEEEeC--CEEE
Confidence 3344567654 46888884 4 7888889999999999998863 2333 2211111 355432 5555
Q ss_pred EEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCC
Q psy4579 198 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD 277 (368)
Q Consensus 198 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~ 277 (368)
+..-.++.+.+||..+. +.+..+... ..-..+++.. .++++.. .
T Consensus 110 ~ltw~~~~v~V~D~~Tl-------~~~~ti~~~-~eGwGLt~Dg-----------~~L~vSd-----------------G 153 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPP-------QRERTTRYS-GEGWGLCYWN-----------GKLVRSD-----------------G 153 (268)
T ss_dssp EEESSSCEEEEEETTTT-------EEEEEEECS-SCCCCEEEET-----------TEEEEEC-----------------S
T ss_pred EEEccCCEEEEEECCcC-------cEEEEEeCC-CceeEEecCC-----------CEEEEEC-----------------C
Confidence 56667899999999886 334444421 1112333331 1122111 1
Q ss_pred CCCcccccCCCCceeeeeecC-cc---cceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKIEIEIKIN-HE---GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-h~---~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
++.+..+|..+.+....+... +. ..++.+.|. +| .++|..-.+..|.+.|.++
T Consensus 154 s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 154 GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTT
T ss_pred CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCC
Confidence 122333444445544444321 21 245777877 66 6887776788999999875
No 234
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.04 E-value=0.14 Score=44.68 Aligned_cols=162 Identities=9% Similarity=0.004 Sum_probs=87.5
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeEEeCCCCCeEEEeeCCCcE
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i 206 (368)
......++|++....++.+-...+.|..+++..... ...+. +-..+. .+++.+..+.+.++-...+.|
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-------~~~~~~~~~~p~----glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-------EEVVSTGLESPG----GLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECSSCSCCC----EEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-------eEEEeCCCCCcc----EEEEecCCCeEEEEcCCCCeE
Confidence 345788999986635666666778899999876531 12122 122232 788887645666666677899
Q ss_pred EEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccC
Q psy4579 207 CLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 286 (368)
Q Consensus 207 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 286 (368)
.+.++..... ...+...-..-+.++++|. ...++..... . .+.+..+++
T Consensus 141 ~~~~~dG~~~-------~~l~~~~l~~P~~iavdp~---------~g~ly~td~~---~------------~~~I~r~~~ 189 (349)
T 3v64_C 141 EVANLDGAHR-------KVLLWQSLEKPRAIALHPM---------EGTIYWTDWG---N------------TPRIEASSM 189 (349)
T ss_dssp EEEETTSCSC-------EEEECTTCSCEEEEEEETT---------TTEEEEEECS---S------------SCEEEEEET
T ss_pred EEEcCCCCce-------EEEEeCCCCCcceEEEecC---------cCeEEEeccC---C------------CCEEEEEeC
Confidence 9999875421 1112222233456666541 0112211100 0 000111111
Q ss_pred CCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 287 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 287 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
. |.....+....-...+.++++|++..++.+-+..+.|..+|+..
T Consensus 190 d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 190 D-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp T-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 1 11111111112335688999997767887777788999999863
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.97 E-value=0.023 Score=48.87 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=48.5
Q ss_pred ccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 111 VQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 111 i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
+..++.+++.................. + ..+..++.++.+..+|.. +. .......+...+. ++...
T Consensus 80 l~~~d~~g~~~~~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~---~~~~~ 145 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYA---TPIVS 145 (330)
T ss_dssp EEEECCCGGGGGGSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCS---CCEEC
T ss_pred EEEECCCCcEEEEEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceee---eeEEc
Confidence 555665443322222222223333343 3 567778889999999987 43 2233333333343 66666
Q ss_pred CCCCCeEEEeeCCCcEEEEECC
Q psy4579 191 PSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
++ +. +..++.++.|..+|..
T Consensus 146 ~~-g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 146 ED-GT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp TT-SC-EEEECTTSEEEEECTT
T ss_pred CC-CE-EEEEcCCCEEEEECCC
Confidence 54 44 6667888999999987
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.95 E-value=0.036 Score=53.28 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=38.6
Q ss_pred CCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 279 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
+.+..+|..+++...... +..++....+...+ .++..++.||.+++||.++
T Consensus 457 g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecC--CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCC
Confidence 567788888998887765 34455556677777 4566789999999999976
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.86 E-value=0.043 Score=47.09 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=55.4
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
.+|.+..++.+++...........+.++...+++ . +..++.++.+..+|.. +. ....+......+. +
T Consensus 115 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~-------~~~~~~~~~~~~~---~ 181 (330)
T 3hxj_A 115 MDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GT-------EKWRFKTNDAITS---A 181 (330)
T ss_dssp TTSEEEEECTTSCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SC-------EEEEEECSSCCCS---C
T ss_pred cCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CC-------EeEEEecCCCcee---e
Confidence 3566777777644433333345556777777776 4 6667788999999987 43 2233333334443 6
Q ss_pred eEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 187 LSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
+...++ +.+ ..++ +.|..+| .++
T Consensus 182 ~~~d~~-g~l-~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 182 ASIGKD-GTI-YFGS--DKVYAIN-PDG 204 (330)
T ss_dssp CEECTT-CCE-EEES--SSEEEEC-TTS
T ss_pred eEEcCC-CEE-EEEe--CEEEEEC-CCC
Confidence 776655 554 4444 8899999 444
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.81 E-value=0.17 Score=41.99 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=56.2
Q ss_pred CCcccCCCCCeeeeecccc-CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--ccccceecc
Q psy4579 108 GGNVQLPNEDAQFDASNYD-TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEVR 184 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~ 184 (368)
++.|..++.++........ .......++++|++..++++-...+.|.+++...... ..+. +...+
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------~~~~~~~~~~P---- 124 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--------RVLFDTGLVNP---- 124 (267)
T ss_dssp TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEECSSCSSE----
T ss_pred CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--------EEEEECCCCCc----
Confidence 5667777766543332222 2246788999997535666666778999999875321 2221 11223
Q ss_pred eeeEEeCCCCCeEEEeeC--CCcEEEEECCC
Q psy4579 185 YGLSWNPSLNGYLLSASD--DHTICLWDINA 213 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~--dg~i~iwd~~~ 213 (368)
..+++.|+++.++++... .+.|..+++..
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 289999973444444333 46888888764
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.064 Score=48.19 Aligned_cols=170 Identities=12% Similarity=0.096 Sum_probs=89.5
Q ss_pred eeEec--CCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--------ccccceecceeeEEeCCCCCeEEEeeC
Q psy4579 133 GLSWN--PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--------GHTAVVEVRYGLSWNPSLNGYLLSASD 202 (368)
Q Consensus 133 ~l~~s--p~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~i~~~p~~~~~l~s~s~ 202 (368)
+..++ +++..++++|..++.|.++|+.+.....+ ..+++. +...+- .+...|+ + +++++..
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph----~~~~~pd-G-i~Vs~~g 156 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLH----TVHCGPD-A-IYISALG 156 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEE----EEEECSS-C-EEEEEEE
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCccc----ceeECCC-e-EEEEcCC
Confidence 34556 77745667777899999999976533222 222221 112222 6677898 6 7777766
Q ss_pred C------CcEEEEECCCCCCCCccccceeeeecc--c-ccEeEEEEeeecccccCCCCccceEEEEeecCCccccccccc
Q psy4579 203 D------HTICLWDINATPKENRVIDAKTIFTGH--T-AVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN 273 (368)
Q Consensus 203 d------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~-~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
+ |.|.+.|..+.+ .+..+..- . ..-+.+-|+|. ...++......+.. + ...
T Consensus 157 ~~~g~~~g~v~vlD~~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~---------~~~mvsS~wg~p~~---~-~~g 216 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFE-------PLGKWEIDRGDQYLAYDFWWNLP---------NEVLVSSEWAVPNT---I-EDG 216 (462)
T ss_dssp ETTSCSCCEEEEECTTTCC-------EEEECCSBCTTCCCCCCEEEETT---------TTEEEECBCCCHHH---H-TTC
T ss_pred CcCCCCCCeEEEEECCCCe-------EEEEEccCCCCccccceEEECCC---------CCEEEEccCcCccc---c-ccc
Confidence 5 789999998863 33443311 1 11223444431 01111100000000 0 000
Q ss_pred cc------CCCCCcccccCCCCceeeeeecCcc-cceeEEEE--eCCCCcEEEEec-----CCCeEEEEECC
Q psy4579 274 YD------TDKGDFGGFGSVSGKIEIEIKINHE-GEVNRARY--MPQNPCVIATKT-----PSSDVLVFDYT 331 (368)
Q Consensus 274 ~d------~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~--~p~~~~~lasgs-----~Dg~i~iwd~~ 331 (368)
++ .....+..|+..+++...++..+.. .....+.| +|++...++++- .+++|.+|...
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 11 1234466677777766666654322 23345555 999977777766 77888776553
No 240
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.74 E-value=0.14 Score=43.92 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=84.1
Q ss_pred CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcE
Q psy4579 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206 (368)
Q Consensus 127 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i 206 (368)
.-....+++|++.+..++.+-...+.|..+++....... .....+...-.... ++++.+..+.+.++-...+.|
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~---glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPD---GLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCC---EEEEETTTTEEEEEETTTTEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc---ccEEEEeCCCCCcC---EEEEeecCCeEEEEECCCCEE
Confidence 345678899998763566666677899999987521000 01122221112222 888886535566666778899
Q ss_pred EEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccC
Q psy4579 207 CLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 286 (368)
Q Consensus 207 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 286 (368)
.+.|+.... ....+.........++++|. ...++..... . .+.+...++
T Consensus 102 ~~~~~~g~~-------~~~~~~~~~~~P~~iavdp~---------~g~ly~~d~~---~------------~~~I~~~~~ 150 (316)
T 1ijq_A 102 SVADTKGVK-------RKTLFRENGSKPRAIVVDPV---------HGFMYWTDWG---T------------PAKIKKGGL 150 (316)
T ss_dssp EEEETTSSS-------EEEEEECTTCCEEEEEEETT---------TTEEEEEECS---S------------SCEEEEEET
T ss_pred EEEeCCCCc-------eEEEEECCCCCcceEEeCCC---------CCEEEEEccC---C------------CCeEEEEcC
Confidence 999986531 11112212223455665530 0112211110 0 000111111
Q ss_pred CCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 287 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 287 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.|+....+....-...+.++++|++..++.+-+..+.|..+|+.
T Consensus 151 -dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 151 -NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11111111112234567889998776777776777888888886
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.14 Score=46.01 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=49.7
Q ss_pred eeeEecCCCCCeeEEEeCC------CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee----
Q psy4579 132 YGLSWNPSLNGYLLSASDD------HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS---- 201 (368)
Q Consensus 132 ~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s---- 201 (368)
..+..+|+| +++++..+ |.|.+.|..+.+ .+..+.....+....|.+.|+|+ .+.+++..
T Consensus 141 h~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p 210 (462)
T 2ece_A 141 HTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE-------PLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVP 210 (462)
T ss_dssp EEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC-------EEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCH
T ss_pred cceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe-------EEEEEccCCCCccccceEEECCC-CCEEEEccCcCc
Confidence 346678887 66666555 789999998764 34444422222211257889999 77888875
Q ss_pred ---------------CCCcEEEEECCCC
Q psy4579 202 ---------------DDHTICLWDINAT 214 (368)
Q Consensus 202 ---------------~dg~i~iwd~~~~ 214 (368)
.+.+|.+||+.++
T Consensus 211 ~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 211 NTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp HHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred cccccccchhhhhhccCCEEEEEECCCC
Confidence 3789999999875
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.62 E-value=0.071 Score=51.35 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 279 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|.+..+|+.+++....... ..++....+...+ .++..|+.||.++.||.++
T Consensus 455 g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tag-glvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAG-NLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT-TEEEEECTTSEEEEEETTT
T ss_pred eeEEEEECCCCCeEeEccC--CCCccCccceECC-CEEEEECCCCcEEEEECCC
Confidence 5678899999998877652 3344444666666 5677889999999999976
No 243
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=96.58 E-value=0.032 Score=49.30 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=45.1
Q ss_pred eEecCCCCCeeEEEeC-----CCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee-------
Q psy4579 134 LSWNPSLNGYLLSASD-----DHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS------- 201 (368)
Q Consensus 134 l~~sp~~~~~lasg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s------- 201 (368)
....|++ +.+..... ++.|.+.|..+.+ .+..+..-..+ .++++|+ +.+++.++
T Consensus 38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~-------v~~~I~vG~~P-----~va~spD-G~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGR-------VIGMIDGGFLP-----NPVVADD-GSFIAHASTVFSRIA 103 (386)
T ss_dssp CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTE-------EEEEEEECSSC-----EEEECTT-SSCEEEEEEEEEETT
T ss_pred eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCe-------EEEEEECCCCC-----cEEECCC-CCEEEEEcccccccc
Confidence 4456887 54444433 6899999998864 33444322221 5899999 77666654
Q ss_pred ---CCCcEEEEECCCC
Q psy4579 202 ---DDHTICLWDINAT 214 (368)
Q Consensus 202 ---~dg~i~iwd~~~~ 214 (368)
.++.|.+||..+.
T Consensus 104 ~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTL 119 (386)
T ss_dssp EEEEEEEEEEECTTTC
T ss_pred cCCCCCEEEEEECCCC
Confidence 4678999999886
No 244
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.55 E-value=0.38 Score=42.61 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCcccCCCCCeeeeecccc-CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 108 GGNVQLPNEDAQFDASNYD-TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
.+.|..++.++.....+.. .......+++.+.+..++++-...+.|.+.++..... ...+...-.... .
T Consensus 137 ~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-------~~l~~~~l~~P~---g 206 (386)
T 3v65_B 137 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-------KVLLWQSLEKPR---A 206 (386)
T ss_dssp TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-------EEEECSSCSCEE---E
T ss_pred CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-------EEeecCCCCCCc---E
Confidence 4566666666543322222 2234567888876536666666778888888765321 111222212232 8
Q ss_pred eEEeCCCCCeEEEeeCC-CcEEEEECCCC
Q psy4579 187 LSWNPSLNGYLLSASDD-HTICLWDINAT 214 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~d-g~i~iwd~~~~ 214 (368)
|++.|.++.++++-... +.|...++...
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 99998744455554444 68888887654
No 245
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.45 E-value=0.45 Score=42.32 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=54.5
Q ss_pred ccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEe
Q psy4579 111 VQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190 (368)
Q Consensus 111 i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~ 190 (368)
|+..++++.....+......+..|+|++.+..++.+-...+.|+.+++....... .....+...-.... .+++.
T Consensus 94 I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~---glavD 167 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPD---GLAVD 167 (400)
T ss_dssp EEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C---CCEEEECSSCSCEE---EEEEE
T ss_pred eEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---cceEEEeCCCCCcc---cEEEE
Confidence 3334444332233334456788999998663556665667889889887532100 01122221222232 77887
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 191 PSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 191 p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
+..+++.++-...+.|.+.|+...
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTC
T ss_pred ecCCceEEEECCCCeEEEEeCCCC
Confidence 753666666677889999988754
No 246
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.39 E-value=0.06 Score=51.91 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=51.8
Q ss_pred ccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeEE
Q psy4579 111 VQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSW 189 (368)
Q Consensus 111 i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~ 189 (368)
|...++++.....+......+..|+|++.+..++++-...+.|+.+++.+...... ....+. +-..+. .|++
T Consensus 388 I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~----glav 460 (699)
T 1n7d_A 388 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPD----GLAV 460 (699)
T ss_dssp -CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CC----CEEC
T ss_pred eEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcc----eEEE
Confidence 33334443323333333456778999987634455555678899999875110000 111111 112222 6777
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 190 NPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 190 ~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
.+..+.++++-...+.|.+.++...
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred EeeCCcEEEEeccCCeEEEEecCCC
Confidence 7553556666667788999988654
No 247
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.38 E-value=0.089 Score=51.25 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=64.5
Q ss_pred EEEEEEecC-CCccccccCCccc-CCCCcccCCCCCee-eeeccccCCCCceeeEecCCCCCeeEEEeCC-----CcEEE
Q psy4579 84 LLIASVQLP-NEDAQFDASNYDT-DKGGNVQLPNEDAQ-FDASNYDTDKGGYGLSWNPSLNGYLLSASDD-----HTICL 155 (368)
Q Consensus 84 ~~i~~~~~~-~~~~~~~~~~~~~-~~~g~i~i~~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-----g~v~i 155 (368)
..+....++ +++..+....... +....|.++++++. ..... .-......++|+|+| +.|+-...| ..|.+
T Consensus 174 ~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 174 CDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDH-TSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp CEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSST-TEEEEEEECTTCCEEEEEE
T ss_pred EEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCC-CEEEEEEECCCCCCCEEEE
Confidence 356666776 6554433222111 11234777787654 31110 001224578999998 666666554 25777
Q ss_pred EeCCCCCCCCcccccceeeecc-ccceecceeeEEeCCCCCeEEEeeC---CCcEEEEECCCC
Q psy4579 156 WDINATPKENRVIDAKTIFTGH-TAVVEVRYGLSWNPSLNGYLLSASD---DHTICLWDINAT 214 (368)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~i~~~p~~~~~l~s~s~---dg~i~iwd~~~~ 214 (368)
+++.++... ....+... .... ..+.|+|+ +.+|+..+. ...|.++|+.++
T Consensus 252 ~~lgt~~~~-----~~lv~~~~~~~~~---~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSE-----DVCLYEEHNPLFS---AFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGG-----CEEEEECCCTTCE---EEEEECTT-SSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchh-----cEEEEecCCCceE---EEEEECCC-CCEEEEEecCCCCceEEEEECCCC
Confidence 787664321 11233221 2222 27899999 776665542 346888888765
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.29 E-value=0.049 Score=47.92 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=40.0
Q ss_pred CeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 142 ~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
..+..++.++.+..+|..+++. ..... ..... .+.. . +..++.++.++.+..+|..++.
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~-------~w~~~--~~~~~---~~~~--~-~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQI-------MWKRE--LGSVN---DFIV--D-GNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCE-------EEEEC--CCCEE---EEEE--E-TTEEEEEETTCCEEEEETTTCC
T ss_pred CEEEEEecCcEEEEEECCCCcE-------Eeecc--CCCCC---CceE--E-CCEEEEEcCCCeEEEEECCCCc
Confidence 5677788899999999987742 22222 11221 3333 2 5678888889999999998873
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.21 E-value=0.39 Score=41.10 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=45.3
Q ss_pred CceeeEecC-CCCCeeEEEeC-----------------CCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeC
Q psy4579 130 GGYGLSWNP-SLNGYLLSASD-----------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191 (368)
Q Consensus 130 ~v~~l~~sp-~~~~~lasg~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p 191 (368)
....+++.+ +| ++.++-.. +|.|..+|..++. ...+...-... ..|+|+|
T Consensus 127 ~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--------~~~~~~~~~~p---~gia~~~ 194 (322)
T 2fp8_A 127 WLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--------TTLLLKELHVP---GGAEVSA 194 (322)
T ss_dssp CEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--------EEEEEEEESCC---CEEEECT
T ss_pred ccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--------EEEeccCCccC---cceEECC
Confidence 467899999 88 66666432 3667788876542 11111111122 3899999
Q ss_pred CCCCeE-EEeeCCCcEEEEECCCC
Q psy4579 192 SLNGYL-LSASDDHTICLWDINAT 214 (368)
Q Consensus 192 ~~~~~l-~s~s~dg~i~iwd~~~~ 214 (368)
+ ++.| ++-+..+.|..+|+...
T Consensus 195 d-g~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 195 D-SSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp T-SSEEEEEEGGGTEEEEEESSST
T ss_pred C-CCEEEEEeCCCCeEEEEECCCC
Confidence 8 6644 45466789999998753
No 250
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.03 E-value=1.1 Score=43.65 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=86.1
Q ss_pred CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcE
Q psy4579 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206 (368)
Q Consensus 127 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i 206 (368)
....+.+|+|++....++++-...+.|+.+++....... .....+...-.... .|++.+..+++.++-...+.|
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~---~~~~vi~~~l~~P~---GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPD---GLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCC---EEEEETTTTEEEEEETTTTEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc---ceeEEEecCCCCcc---eeeeeecCCcEEEEecCCCeE
Confidence 345677899998653566666677888888887531100 01122221222222 788877635666666778899
Q ss_pred EEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccC
Q psy4579 207 CLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS 286 (368)
Q Consensus 207 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 286 (368)
.+.++..... ...+...-.....|++++. ...++..... .. +.+...++
T Consensus 496 ~v~~ldG~~~-------~~l~~~~l~~P~gIaVDp~---------~g~LYwtD~g---~~------------~~I~~~~~ 544 (791)
T 3m0c_C 496 SVADTKGVKR-------KTLFRENGSKPRAIVVDPV---------HGFMYWTDWG---TP------------AKIKKGGL 544 (791)
T ss_dssp EEEETTSSSE-------EEEEECTTCCEEEEEEETT---------TTEEEEEECS---SS------------CEEEEEET
T ss_pred EEEeCCCCeE-------EEEEeCCCCCcceEEEecC---------CCCEEEecCC---CC------------CeEEEEec
Confidence 9999875421 1112222233556676641 0112211100 00 00111111
Q ss_pred CCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 287 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 287 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.|.....+........+.|++.|.+..|+.+=.....|...++..
T Consensus 545 -dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 545 -NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp -TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 122222222123356788999987767776766677888888863
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.99 E-value=0.54 Score=38.86 Aligned_cols=174 Identities=11% Similarity=0.143 Sum_probs=95.1
Q ss_pred cccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee--eccccceecceeeEEeCCCCCeEEEee
Q psy4579 124 NYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVEVRYGLSWNPSLNGYLLSAS 201 (368)
Q Consensus 124 ~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~i~~~p~~~~~l~s~s 201 (368)
+-+-.+.+..++|+|++..++++...++.|...|.. ++ ..+.+ .+.. ... .|++.++ +.++++.-
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-------v~~~i~l~g~~-D~E---GIa~~~~-g~~~vs~E 88 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-------LIRTIPLDFVK-DLE---TIEYIGD-NQFVISDE 88 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-------EEEEEECSSCS-SEE---EEEECST-TEEEEEET
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-------EEEEEecCCCC-ChH---HeEEeCC-CEEEEEEC
Confidence 344556799999999873566667778888888887 32 23333 3322 333 8888876 66666665
Q ss_pred CCCcEEEEECCCCCCCCcccccee-ee--ecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCC
Q psy4579 202 DDHTICLWDINATPKENRVIDAKT-IF--TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK 278 (368)
Q Consensus 202 ~dg~i~iwd~~~~~~~~~~~~~~~-~~--~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 278 (368)
.++.+.++++....... ...... .+ .........++|++ ...++|+..-.-+ ..+..++
T Consensus 89 ~~~~l~~~~v~~~~~i~-~~~~~~~~~~~~~~N~g~EGLA~d~---------~~~~L~va~E~~p-----~~i~~~~--- 150 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVK-ILKKIKIPLQESPTNCGFEGLAYSR---------QDHTFWFFKEKNP-----IEVYKVN--- 150 (255)
T ss_dssp TTTEEEEEEECTTCCEE-EEEEEECCCSSCCCSSCCEEEEEET---------TTTEEEEEEESSS-----EEEEEEE---
T ss_pred CCCcEEEEEcCCCCeee-eeeeeccccccccccCCcceEEEeC---------CCCEEEEEECcCC-----ceEEEEc---
Confidence 67889999886653210 000000 00 11234457788875 1234444331110 0111111
Q ss_pred CCcccccCCCCceeee--e-ecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 279 GDFGGFGSVSGKIEIE--I-KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~--~-~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
|.... ..-..... + ...+...+.+++++|....+++.......+..+|..
T Consensus 151 g~~~~---~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 151 GLLSS---NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp STTCS---SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccccC---CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 00000 00000000 0 012344679999999877888888888899999976
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.68 E-value=0.39 Score=41.09 Aligned_cols=171 Identities=8% Similarity=0.072 Sum_probs=86.7
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec--------------------cccceecceeeEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--------------------HTAVVEVRYGLSW 189 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--------------------h~~~v~~~~~i~~ 189 (368)
...+++|++++ +++.++..++.|..||..++. ...+.. ....+ .++++
T Consensus 20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p---~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSG--------FVDFAYASPYWNKAFCENSTDAEKRPLCGRT---YDISY 87 (322)
T ss_dssp CCCCEECCTTC-SSEEEECTTSEEEEECCTTTC--------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCE---EEEEE
T ss_pred CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCc--------eEEEecccccccccccccccchhccccCCCC---ceEEE
Confidence 45678899988 778888889999999877542 111210 01123 38999
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecc-----cccEeEEEEeeecccccCCCCccceEEEEeecCC
Q psy4579 190 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-----TAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPN 264 (368)
Q Consensus 190 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~ 264 (368)
.++++. |+.+...+.|..+|..++. +..+... ....+.+++.+ . ...+|+.......
T Consensus 88 ~~~~g~-l~v~d~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~p~~i~~d~-------~--~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 88 NLQNNQ-LYIVDCYYHLSVVGSEGGH--------ATQLATSVDGVPFKWLYAVTVDQ-------R--TGIVYFTDVSTLY 149 (322)
T ss_dssp ETTTTE-EEEEETTTEEEEECTTCEE--------CEEEESEETTEECSCEEEEEECT-------T--TCCEEEEESCSSC
T ss_pred cCCCCc-EEEEECCCCEEEEeCCCCE--------EEEecccCCCCcccccceEEEec-------C--CCEEEEECCcccc
Confidence 874244 4555445558888876431 1111110 01223333321 0 1245655432100
Q ss_pred cccccccc-cccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 265 EDAQFDAS-NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 265 ~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
........ .-....+.+..++..+++..... ......+.++++|++..++++-+..+.|.++++..
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 00000000 00011223344444444332211 11234577999999865776767778999999874
No 253
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.55 E-value=0.5 Score=42.53 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.8
Q ss_pred cceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 301 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 301 ~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
..-+.++|+|++..++++-...+.|..++...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 34678999999965777877889999988763
No 254
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.43 E-value=1.2 Score=38.82 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=38.8
Q ss_pred CeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc--cc--------eecceeeEEeCCCCCeEEEeeCCCcEEEEEC
Q psy4579 142 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT--AV--------VEVRYGLSWNPSLNGYLLSASDDHTICLWDI 211 (368)
Q Consensus 142 ~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~--~~--------v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~ 211 (368)
..++.+..+|.+..+|..+++. ........ .. +. ..... . +..++.++.++.+..+|.
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~-------~w~~~~~~~~~~~~~~~~~~~~--~~p~~--~-~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQM-------IWQQRISQATGSTEIDRLSDVD--TTPVV--V-NGVVFALAYNGNLTALDL 256 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCE-------EEEEECCC-----------CCC--CCCEE--E-TTEEEEECTTSCEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCcE-------EEEEecccCCCCcccccccccC--CCcEE--E-CCEEEEEecCcEEEEEEC
Confidence 4677788899999999987742 22222110 00 10 01111 2 567788888999999999
Q ss_pred CCCC
Q psy4579 212 NATP 215 (368)
Q Consensus 212 ~~~~ 215 (368)
+++.
T Consensus 257 ~tG~ 260 (376)
T 3q7m_A 257 RSGQ 260 (376)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8873
No 255
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.42 E-value=0.14 Score=45.93 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee----------CCCcEEEEECCCCC
Q psy4579 151 HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS----------DDHTICLWDINATP 215 (368)
Q Consensus 151 g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~ 215 (368)
+.|.++|..+.+ .+..+..-..+ .+.++|+ +++++.+. .++.|.++|..+..
T Consensus 99 ~~VsVID~~t~~-------vv~~I~vG~~P-----gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 99 TQQFVIDGSTGR-------ILGMTDGGFLP-----HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp EEEEEEETTTTE-------EEEEEEECSSC-----EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CeEEEEECCCCE-------EEEEEECCCCC-----ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 799999998864 33334322221 6889999 66666654 47799999998863
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.33 E-value=0.35 Score=47.09 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=45.3
Q ss_pred CceeeEec-CCCCCeeEEE-eCCC----cEEEEeCCCC-CCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeC
Q psy4579 130 GGYGLSWN-PSLNGYLLSA-SDDH----TICLWDINAT-PKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202 (368)
Q Consensus 130 ~v~~l~~s-p~~~~~lasg-~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~ 202 (368)
.+...+|| |+| ++||-+ ..+| .|+++|+.++ ... ...+.. .. .++.|+|+ ++.|+....
T Consensus 175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~~~~~~---~~---~~~~WspD-g~~l~y~~~ 240 (751)
T 2xe4_A 175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTI------ADKVSG---TN---GEIVWGPD-HTSLFYVTK 240 (751)
T ss_dssp EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCC------CCCEEE---EC---SCCEECSS-TTEEEEEEE
T ss_pred EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeC------CccccC---ce---eeEEEecC-CCEEEEEEE
Confidence 57788999 999 766643 3333 4999999886 411 111111 12 28899999 666665555
Q ss_pred C-----CcEEEEECCCC
Q psy4579 203 D-----HTICLWDINAT 214 (368)
Q Consensus 203 d-----g~i~iwd~~~~ 214 (368)
| ..|.++++.++
T Consensus 241 d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKL 257 (751)
T ss_dssp CTTCCEEEEEEEETTSC
T ss_pred CCCCCCCEEEEEECCCC
Confidence 4 25777888665
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.11 E-value=0.11 Score=45.70 Aligned_cols=69 Identities=3% Similarity=-0.076 Sum_probs=48.1
Q ss_pred eEecCCCCCeeEEE-e---C-----CCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee-CC
Q psy4579 134 LSWNPSLNGYLLSA-S---D-----DHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS-DD 203 (368)
Q Consensus 134 l~~sp~~~~~lasg-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s-~d 203 (368)
+.++|++ +.+..+ . . ++.+.++|+.+.+ .+..+.....+ .+++|+|++..++++.. .+
T Consensus 269 v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-------vv~~i~vg~~p----~gi~~s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 269 VAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQ-------TSGPISNGHDS----DAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp EEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCC-------EEECCEEEEEE----CEEEECCSSSCEEEEEETTT
T ss_pred eEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCe-------EEEEEECCCCc----ceEEECCCCCEEEEEccCCC
Confidence 7899998 555543 3 2 2356699998875 33444433333 39999999444677777 59
Q ss_pred CcEEEEECCCC
Q psy4579 204 HTICLWDINAT 214 (368)
Q Consensus 204 g~i~iwd~~~~ 214 (368)
+.|.++|+.+.
T Consensus 337 ~~VsVID~~t~ 347 (368)
T 1mda_H 337 EVLDIYDAASD 347 (368)
T ss_dssp TEEEEEESSSC
T ss_pred CeEEEEECCCC
Confidence 99999999987
No 258
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.93 E-value=1.7 Score=37.68 Aligned_cols=100 Identities=12% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCCcccCCCCCeeeeeccccCCCCceeeEecCCC---CC---e-eEEEeC--CCcEEEEeCCCCCCCCcccccceeeec
Q psy4579 106 DKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSL---NG---Y-LLSASD--DHTICLWDINATPKENRVIDAKTIFTG 176 (368)
Q Consensus 106 ~~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~---~-lasg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~ 176 (368)
.+.+-+.+++++++.+..+.. +.++.+..-|.- .. + +++.-. +.+|++|++..... .+..+..
T Consensus 47 ~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~------~l~~i~~ 118 (355)
T 3amr_A 47 NKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG------TLQSMTD 118 (355)
T ss_dssp ETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC------CEEECSC
T ss_pred cCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC------ceeeccc
Confidence 356778899998877766532 556666666521 01 2 333334 58899997742211 1222211
Q ss_pred c----ccceecceeeEE--eCCCCC-eEEEeeCCCcEEEEECCC
Q psy4579 177 H----TAVVEVRYGLSW--NPSLNG-YLLSASDDHTICLWDINA 213 (368)
Q Consensus 177 h----~~~v~~~~~i~~--~p~~~~-~l~s~s~dg~i~iwd~~~ 213 (368)
- ...+..++.+++ +|..+. +++....+|.+..|++..
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 0 001112257777 675343 677888899999999843
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.90 E-value=1.7 Score=37.69 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=56.3
Q ss_pred CCcccCCCCCeeeeecccc-CCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 108 GGNVQLPNEDAQFDASNYD-TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
.+.|..++.++........ .......+++.+.+..++++-...+.|.+.++..... ...+...-.... .
T Consensus 94 ~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-------~~l~~~~l~~P~---~ 163 (349)
T 3v64_C 94 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-------KVLLWQSLEKPR---A 163 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECTTCSCEE---E
T ss_pred CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-------EEEEeCCCCCcc---e
Confidence 4556666655433222221 2234577888876536667777778999999875421 111222212232 8
Q ss_pred eEEeCCCCCeEEEeeCC-CcEEEEECCCC
Q psy4579 187 LSWNPSLNGYLLSASDD-HTICLWDINAT 214 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~d-g~i~iwd~~~~ 214 (368)
+++.|.++.++.+-... +.|...++...
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 99999745555555455 78888888653
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.53 E-value=0.19 Score=46.81 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=25.9
Q ss_pred ceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 302 EVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 302 ~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
....++|+|+| ++.++.-.|+.|.+||+..
T Consensus 332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred CcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 35678999999 8888888999999999865
No 261
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.52 E-value=0.5 Score=45.32 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred CCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecC----------------CCeEEEEECCC
Q psy4579 277 DKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP----------------SSDVLVFDYTK 332 (368)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~----------------Dg~i~iwd~~~ 332 (368)
..+.+..+|..+++++..+..++.....-+.|.++|..+++..+. .+.+..|.+..
T Consensus 496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 496 ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 345677788888998888876655455667788888666655333 47888888863
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.22 E-value=2 Score=35.44 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=64.3
Q ss_pred EEEEecCCCccccccCCcccCCCCcccCCCCCeeeeecc-ccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCC
Q psy4579 86 IASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASN-YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE 164 (368)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 164 (368)
++.+.+.+.+..+.+.. +.++.|...+.+++..... ..-....-.|++.+++ .++++.-.++.+.++++......
T Consensus 29 lSGla~~~~~~~L~aV~---d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTI---NKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp EEEEEEETTTTEEEEEE---ETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCE
T ss_pred cceeEEeCCCCEEEEEE---CCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCee
Confidence 55566643333333322 2356676667665544443 1222457778888887 66666556788889888654320
Q ss_pred Ccccccce-ee--eccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECC
Q psy4579 165 NRVIDAKT-IF--TGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 165 ~~~~~~~~-~~--~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
.. ..... .+ ........ +|+|.|. ++.|.++.......||.+.
T Consensus 105 ~~-~~~~~~~~~~~~~N~g~E---GLA~d~~-~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 105 KI-LKKIKIPLQESPTNCGFE---GLAYSRQ-DHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EE-EEEEECCCSSCCCSSCCE---EEEEETT-TTEEEEEEESSSEEEEEEE
T ss_pred ee-eeeeccccccccccCCcc---eEEEeCC-CCEEEEEECcCCceEEEEc
Confidence 00 00000 01 11223345 9999998 6666666665555566554
No 263
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.96 E-value=4.3 Score=38.37 Aligned_cols=183 Identities=9% Similarity=0.020 Sum_probs=89.6
Q ss_pred CcccCCCCCeee--eeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceeccee
Q psy4579 109 GNVQLPNEDAQF--DASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186 (368)
Q Consensus 109 g~i~i~~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 186 (368)
..|+..++++.. .......-+....|+|++.+..++.+-...+.|..++++.... ....+...-.... .
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~---G 88 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPD---G 88 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEE---E
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcC---e
Confidence 445555555421 1122233445778999987635555555678888888875421 0122222112232 8
Q ss_pred eEEeCCCCCeEEEeeCCCcEEEEECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcc
Q psy4579 187 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNED 266 (368)
Q Consensus 187 i~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (368)
+++.+..+++.++-...+.|.+.++..... ...+...-..-..++++|. ...++..... ..
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-------~~l~~~~l~~P~~Iavdp~---------~g~ly~tD~g---~~ 149 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLR-------KVLFWQELDQPRAIALDPS---------SGFMYWTDWG---EV 149 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECSSCSCCCCEEEETT---------TTEEEEEECS---SS
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCE-------EEEEeCCCCCCceEEEecC---------CCeEEEeccC---CC
Confidence 888876355666667788999999876421 1111122223345555531 0122222110 00
Q ss_pred cccccccccCCCCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 267 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
..+.....| |.....+....-...+.++++|++..++.+=+..+.|...|+..
T Consensus 150 ~~I~r~~~d-------------G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 150 PKIERAGMD-------------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp CEEEEEETT-------------SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred CEEEEEECC-------------CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 000000011 11111111122345688999997767777767778888888863
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.86 E-value=2.1 Score=40.93 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 279 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|.+..+|..+++....... ..+.....+...+ .++..|+.||.++.||.+.
T Consensus 438 g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT-TEEEEECTTSEEEEEETTT
T ss_pred ceEEEEeCCCCcEEEEccC--CCCCcCceeEeCC-CEEEEECCcccchhhhhhc
Confidence 5577788889988776653 2333334455556 4666789999999999975
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.86 E-value=4.7 Score=39.29 Aligned_cols=153 Identities=5% Similarity=0.015 Sum_probs=81.6
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--------ccccceecceeeEEeCCCCCeEEE
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--------GHTAVVEVRYGLSWNPSLNGYLLS 199 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~i~~~p~~~~~l~s 199 (368)
...|.++...++| .+ ..|..+| |.+||..+.. ...+. -....| .++...++ + .|-.
T Consensus 262 ~~~i~~i~~d~~g-~l-Wigt~~G-l~~~~~~~~~--------~~~~~~~~~~~~~l~~~~i---~~i~~D~~-g-~lWi 325 (795)
T 4a2l_A 262 SNYIRSLAMDSQN-RL-WIGTFND-LNIYHEGTDS--------FASYSSNPVENGSLSQRSV---RSIFMDSQ-G-GMWL 325 (795)
T ss_dssp CSBEEEEEECTTS-CE-EEEESSC-EEEEETTTTE--------EEEECCCTTSTTSCSSSCE---EEEEECTT-S-CEEE
T ss_pred CCeEEEEEEcCCC-CE-EEEeCCh-hheEcCCCCe--------EEEEecCCCCCCCCCCCcE---EEEEEeCC-c-CEEE
Confidence 3569999999887 44 4444454 7788876542 11111 112345 37777665 4 4566
Q ss_pred eeCCCcEEEEECCCCCCCCccccceeeeec-------ccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccc
Q psy4579 200 ASDDHTICLWDINATPKENRVIDAKTIFTG-------HTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS 272 (368)
Q Consensus 200 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
|+.++-|..|+..+.. ...+.. ....|.++... ....+|+.+.
T Consensus 326 gt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~l~~~~V~~i~~d----------~~g~lWiGt~------------ 375 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNR--------FKNIRNIPYKNSLSDNVVSCIVED----------KDKNLWIGTN------------ 375 (795)
T ss_dssp EESSSCEEEECGGGGS--------SEEECCCTTSSSCSCSSEEEEEEC----------TTSCEEEEES------------
T ss_pred EECCCCeEEeCCCccc--------ceEEcCCCCCCCCCCCeeEEEEEC----------CCCCEEEEEC------------
Confidence 7777888899865532 111110 12335555443 2345666541
Q ss_pred cccCCCCCcccccCCCCceeeeeec-------CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 273 NYDTDKGDFGGFGSVSGKIEIEIKI-------NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+..++..++........ .....|.++...+++ .+|-.|+.++-+.++|...
T Consensus 376 -----~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 376 -----DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp -----SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTT
T ss_pred -----CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCC
Confidence 11122222222222111100 123568899988888 5233566777899999764
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.74 E-value=2.6 Score=37.87 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=23.3
Q ss_pred eEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 304 NRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 304 ~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
..++|+|++..++++-...+.|+.+++.
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 4699999996577777788999998875
No 267
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.62 E-value=5.7 Score=38.71 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeEEeCCCCCeEEEee-C-CC
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSWNPSLNGYLLSAS-D-DH 204 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~~p~~~~~l~s~s-~-dg 204 (368)
-.....|++.+.+.+++++-...+.|.+.++.... ...+. ..-... ..|++.|. ...|+... . .+
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--------~~~l~~~~l~~P---~gIaVDp~-~g~LYwtD~g~~~ 537 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGSKP---RAIVVDPV-HGFMYWTDWGTPA 537 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEEECTTCCE---EEEEEETT-TTEEEEEECSSSC
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--------EEEEEeCCCCCc---ceEEEecC-CCCEEEecCCCCC
Confidence 34567788888764666677778899999987542 12222 122223 28999997 44444443 2 36
Q ss_pred cEEEEECCCC
Q psy4579 205 TICLWDINAT 214 (368)
Q Consensus 205 ~i~iwd~~~~ 214 (368)
.|...++...
T Consensus 538 ~I~~~~~dG~ 547 (791)
T 3m0c_C 538 KIKKGGLNGV 547 (791)
T ss_dssp EEEEEETTSC
T ss_pred eEEEEecCCC
Confidence 7888888654
No 268
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.46 E-value=0.76 Score=44.25 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=42.2
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeEEeCCCCCeEEEeeCC-CcEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSWNPSLNGYLLSASDD-HTIC 207 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~~p~~~~~l~s~s~d-g~i~ 207 (368)
....|++.+.+.+++++-...+.|.+.++.... ...+. ..-... ..|++.|..+.++++-... +.|.
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--------~~~l~~~~~~~P---~giavDp~~g~ly~td~~~~~~I~ 522 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFREQGSKP---RAIVVDPVHGFMYWTDWGTPAKIK 522 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--------EEEECCCSSCCC---CCEECCSSSSCCEECCCSSSCCEE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc--------eEEEEeCCCCCc---ceEEEccCCCcEEEcccCCCCeEE
Confidence 345688886553566665667889999987542 12221 111222 2889988744444443333 6777
Q ss_pred EEECCC
Q psy4579 208 LWDINA 213 (368)
Q Consensus 208 iwd~~~ 213 (368)
..++..
T Consensus 523 ~~~~dG 528 (699)
T 1n7d_A 523 KGGLNG 528 (699)
T ss_dssp BCCSSS
T ss_pred EEeCCC
Confidence 777654
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.29 E-value=3.3 Score=34.92 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=51.0
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCC-C-cEEEEeCCCCCCCCcccccceeeeccccceecce
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDD-H-TICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-g-~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 185 (368)
++.|..++.++.... ..........+++.++| +++++.... + .|..+|..++... ....+.. .....
T Consensus 52 ~~~I~~~d~~g~~~~-~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~-----~~~~~~~-~~~~~--- 120 (306)
T 2p4o_A 52 VGEIVSITPDGNQQI-HATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVE-----TLLTLPD-AIFLN--- 120 (306)
T ss_dssp TTEEEEECTTCCEEE-EEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEE-----EEEECTT-CSCEE---
T ss_pred CCeEEEECCCCceEE-EEeCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEE-----EEEeCCC-ccccC---
Confidence 567777777664332 22233568899999998 666655433 2 3666666554310 1111111 11111
Q ss_pred eeEEeCCCCCeEEEeeCCCcEEEEECCC
Q psy4579 186 GLSWNPSLNGYLLSASDDHTICLWDINA 213 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg~i~iwd~~~ 213 (368)
.++..++ +..+++-..++.|..+|...
T Consensus 121 g~~~~~~-~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 121 GITPLSD-TQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EEEESSS-SEEEEEETTTTEEEEEETTT
T ss_pred cccccCC-CcEEEEECCCCeEEEEeCCC
Confidence 4444443 44455555688899998765
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.26 E-value=2.3 Score=39.82 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=34.0
Q ss_pred CCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+.+..+|..+++.......+ ..+....+...+ .++..++.||.++.+|.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKG-GLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETT-TEEEEECTTSEEEEEETTT
T ss_pred CCeEEEEECCCCCEEEEecCC--CCccceeEEECC-CEEEEEcCCCeEEEEECCC
Confidence 356778888888887766532 233333333344 3444689999999999875
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.84 E-value=4.1 Score=34.77 Aligned_cols=161 Identities=10% Similarity=0.006 Sum_probs=85.3
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLW 209 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iw 209 (368)
...+++|++....++.+-...+.|..+++...... ...+...-.... ++++.+..+.+.++-...+.|.+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~------~~~~~~~l~~p~---glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------QNVVVSGLLSPD---GLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC------CEEEEECCSCCC---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce------EEEEcCCCCCcc---EEEEEcCCCeEEEEECCCCEEEEE
Confidence 46689999865356666667888999998765211 111211111222 788887536666666677899999
Q ss_pred ECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCCC
Q psy4579 210 DINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 289 (368)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 289 (368)
++..... ...+......-+.+++++. ...++..... . .+.+...++. |
T Consensus 107 ~~dG~~~-------~~l~~~~~~~P~giavdp~---------~g~ly~td~~---~------------~~~I~r~~~d-G 154 (318)
T 3sov_A 107 NLDGSLR-------KVLFWQELDQPRAIALDPS---------SGFMYWTDWG---E------------VPKIERAGMD-G 154 (318)
T ss_dssp ETTSCSC-------EEEECSSCSSEEEEEEEGG---------GTEEEEEECS---S------------SCEEEEEETT-S
T ss_pred ECCCCcE-------EEEEeCCCCCccEEEEeCC---------CCEEEEEecC---C------------CCEEEEEEcC-C
Confidence 9875421 1111122233456666541 0111111100 0 0001111110 1
Q ss_pred ceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 290 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 290 ~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.....+....-..-+.++++|++..++.+=+..+.|..+|+.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 111111111223458899999776787777778899999986
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.54 E-value=4.2 Score=34.22 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=47.0
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCC-C-cE
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD-H-TI 206 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~d-g-~i 206 (368)
.....++|++++ +++++-..++.|..+|.... ....+.. .... .++++.++ ++++++.... + .|
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~--------~~~~~~~-~~~p---~gia~~~d-G~l~vad~~~~~~~v 97 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGN--------QQIHATV-EGKV---SGLAFTSN-GDLVATGWNADSIPV 97 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCC--------EEEEEEC-SSEE---EEEEECTT-SCEEEEEECTTSCEE
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCCc--------eEEEEeC-CCCc---eeEEEcCC-CcEEEEeccCCcceE
Confidence 567789999998 77777778899999987653 1122222 2234 38999998 6766555432 2 46
Q ss_pred EEEECCCC
Q psy4579 207 CLWDINAT 214 (368)
Q Consensus 207 ~iwd~~~~ 214 (368)
..+|..++
T Consensus 98 ~~~d~~~g 105 (306)
T 2p4o_A 98 VSLVKSDG 105 (306)
T ss_dssp EEEECTTS
T ss_pred EEEcCCCC
Confidence 66676554
No 273
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=91.47 E-value=0.18 Score=48.50 Aligned_cols=84 Identities=10% Similarity=-0.006 Sum_probs=55.6
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL 187 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i 187 (368)
+|.+..||+.+..+.....+..++..-.+...+ .+++.|+.||.++.||.++++ .+..++...+... .-+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~-------~lw~~~~~~~~~~--~p~ 523 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE-------KLWEQPAASGVMA--APV 523 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEECSSCCCS--CCE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECC-CEEEEECCCCcEEEEECCCCc-------cceeeeCCCCccc--Cce
Confidence 477888988765555545555555555666676 799999999999999999985 3455554433321 256
Q ss_pred EEeCCCCCeEEEee
Q psy4579 188 SWNPSLNGYLLSAS 201 (368)
Q Consensus 188 ~~~p~~~~~l~s~s 201 (368)
.|..++..++++.+
T Consensus 524 ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 524 TYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 66666445555543
No 274
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.44 E-value=4.2 Score=36.20 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=54.6
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcc-c--ccc--eeeec------cccceecceeeEEeCCC--CCe
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV-I--DAK--TIFTG------HTAVVEVRYGLSWNPSL--NGY 196 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~-~--~~~--~~~~~------h~~~v~~~~~i~~~p~~--~~~ 196 (368)
.|..+..||+| ++||..+ +..|.|-.+..+...... . .+. +.+.- ...+|. .+.|||-. +..
T Consensus 67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~---qVlWHPl~~~ds~ 141 (452)
T 3pbp_A 67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIK---KVLFHPKSYRDSC 141 (452)
T ss_dssp TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEE---EEEECTTBGGGCE
T ss_pred ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCcee---EEEeccccCCCCe
Confidence 56779999999 8888876 568999888743211110 0 011 12221 235565 99999963 447
Q ss_pred EEEeeCCCcEEEEECCCCC
Q psy4579 197 LLSASDDHTICLWDINATP 215 (368)
Q Consensus 197 l~s~s~dg~i~iwd~~~~~ 215 (368)
|++-..|+.|++||+....
T Consensus 142 LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 142 IVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp EEEEETTSCEEEEETTCTT
T ss_pred EEEEecCCEEEEEEcccCC
Confidence 9999999999999998743
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.28 E-value=6.2 Score=33.49 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=45.6
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCC-CcEE
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD-HTIC 207 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~d-g~i~ 207 (368)
.....+++.+.+.+++++-...+.|.+.+...... ...+...-.... .++..|.++.++++.... +.|.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-------~~~~~~~~~~P~---~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-------KTLFRENGSKPR---AIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-------EEEEECTTCCEE---EEEEETTTTEEEEEECSSSCEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-------EEEEECCCCCcc---eEEeCCCCCEEEEEccCCCCeEE
Confidence 34578888875535666667788999999875321 111221212233 899998734444444333 6888
Q ss_pred EEECCCC
Q psy4579 208 LWDINAT 214 (368)
Q Consensus 208 iwd~~~~ 214 (368)
..++...
T Consensus 147 ~~~~dG~ 153 (316)
T 1ijq_A 147 KGGLNGV 153 (316)
T ss_dssp EEETTSC
T ss_pred EEcCCCC
Confidence 8887543
No 276
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.82 E-value=0.29 Score=45.60 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC-----CCcccccceeeeccccceecceeeEEeCCCCCeEEEeeC
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK-----ENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~ 202 (368)
.....++.++|||...++++..+.+|.++|+.+... ..........+..-.++. .++|+|+ +...++.-.
T Consensus 276 g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~----h~aF~~d-G~aY~t~~l 350 (595)
T 1fwx_A 276 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL----HTAFDGR-GNAYTSLFL 350 (595)
T ss_dssp ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE----EEEECTT-SEEEEEETT
T ss_pred CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc----eEEECCC-CeEEEEEec
Confidence 345678999999944555666789999999985410 000000112223233443 8999999 666667788
Q ss_pred CCcEEEEECCC
Q psy4579 203 DHTICLWDINA 213 (368)
Q Consensus 203 dg~i~iwd~~~ 213 (368)
|++|.+||+..
T Consensus 351 dsqV~kwdi~~ 361 (595)
T 1fwx_A 351 DSQVVKWNIED 361 (595)
T ss_dssp TTEEEEEEHHH
T ss_pred CCcEEEEEhhH
Confidence 99999999876
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.55 E-value=6.1 Score=37.54 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=45.8
Q ss_pred eeEecC-CCCCeeEEEeCCC-----------cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEe
Q psy4579 133 GLSWNP-SLNGYLLSASDDH-----------TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200 (368)
Q Consensus 133 ~l~~sp-~~~~~lasg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~ 200 (368)
++++.| ++ ++++.|+.+. .+.+||..+..-. ....+........ .++++.++ +.+++.|
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-----~~~~~~~~~~~~~--~~~~~~~~-g~lyv~G 260 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-----DRTVTVTKHDMFC--PGISMDGN-GQIVVTG 260 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-----CCEEEECSCCCSS--CEEEECTT-SCEEEEC
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEE-----eCcccCCCCCCcc--ccccCCCC-CCEEEeC
Confidence 566777 66 8888887543 5888998876421 1222222111111 14677777 8888898
Q ss_pred eC-CCcEEEEECCCC
Q psy4579 201 SD-DHTICLWDINAT 214 (368)
Q Consensus 201 s~-dg~i~iwd~~~~ 214 (368)
+. +..+.+||..+.
T Consensus 261 G~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSD 275 (656)
T ss_dssp SSSTTCEEEEEGGGT
T ss_pred CCCCCceEEecCcCC
Confidence 84 558999998764
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=90.48 E-value=8 Score=36.20 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=34.2
Q ss_pred CCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.|.+..+|..+++...+...+ .++..-.....+ .++..|+.||.++.||.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-glvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETT-TEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEeCC-CEEEEECCCCcEEEEECCC
Confidence 466788888899887766532 222222222234 3555789999999999976
No 279
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=90.29 E-value=8.5 Score=33.41 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=27.6
Q ss_pred ccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 300 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 300 ~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
-..-+.++|+|++..++++-+..+.|..|++..
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 345689999999977887878889999999863
No 280
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.23 E-value=8.5 Score=33.29 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCC
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 161 (368)
..-+.|+|.|+| .++++--..|.|++++...+
T Consensus 32 ~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 32 NSPWGLAPLPGG-DLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCC-cEEEEEecCCEEEEEECCCC
Confidence 456789999998 77777665899999876544
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=89.87 E-value=8.7 Score=32.90 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=45.8
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec----cccceecceeeEE---eCCCCCeEEEee
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG----HTAVVEVRYGLSW---NPSLNGYLLSAS 201 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~i~~---~p~~~~~l~s~s 201 (368)
-.-.+++|.+....++++.-..|+|..||...+... .. .+.+ ..... .++.|.| .|+ +.++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-----~~-~~~~~s~~g~~~~-~~sGl~~~~~D~~-grL~vv~~ 84 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-----NV-VIDGASSNGDGEQ-QMSGLSLLTHDNS-KRLFAVMK 84 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-----EE-CCTTTCCSSCCSE-EEEEEEESSSSSC-CEEEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-----EE-ecCCccccCCCcc-eeeEEEEeccCCC-CcEEEEEc
Confidence 345578998865245555557999999998754211 11 1221 11111 1148999 576 77776543
Q ss_pred -------------CCCcEEEEECC
Q psy4579 202 -------------DDHTICLWDIN 212 (368)
Q Consensus 202 -------------~dg~i~iwd~~ 212 (368)
.+..|..+|+.
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESS
T ss_pred ccccccccccccCCCCEEEEEcCC
Confidence 26789999998
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=89.08 E-value=12 Score=33.40 Aligned_cols=95 Identities=8% Similarity=0.143 Sum_probs=54.0
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCC-eeEEEeCCC----cEEEEeCCCCCCCCcccccceeeeccccceec
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNG-YLLSASDDH----TICLWDINATPKENRVIDAKTIFTGHTAVVEV 183 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~lasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 183 (368)
+.|..++.++..+..+.........|+|++++ + ++++...++ .+...+.... .. ....+.....+
T Consensus 159 ~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~~g~-~~-----~~~~l~~~~~p--- 228 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTRESG-FK-----VITELTKGQNC--- 228 (430)
T ss_dssp EEEEEEETTTTEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEGGGT-SC-----SEEEEEECSSC---
T ss_pred CcEEEEECCCCEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeCCCc-ee-----eeeeeccCCCc---
Confidence 45555665554333444444567889999998 6 555544333 2333443221 11 11222222222
Q ss_pred ceeeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 184 RYGLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
..++++|+++.++++-..++.|..+|....
T Consensus 229 -~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 229 -NGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp -CCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred -eEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 288999953777777667889999998754
No 283
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=88.81 E-value=16 Score=34.51 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=86.5
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEE
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICL 208 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~i 208 (368)
.....|+|++.+..++.+-..++.|..+++..... ...+...-.... .|++.+..+++..+-...+.|.+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-------~~v~~~g~~~P~---GlAvD~~~~~LY~tD~~~~~I~v 106 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-------EHVVEFGLDYPE---GMAVDWLGKNLYWADTGTNRIEV 106 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECSSCSCCC---EEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-------EEEEeCCCCCcc---eEEEEeCCCEEEEEECCCCEEEE
Confidence 45778999997635666666789999998875421 122221112222 77777663556666667789999
Q ss_pred EECCCCCCCCccccceeeeecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCC
Q psy4579 209 WDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 288 (368)
Q Consensus 209 wd~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 288 (368)
.++..... ...+...-..-..++++|. ...++..... . .+.+...++.
T Consensus 107 ~~~dG~~~-------~~l~~~~l~~P~~iavdp~---------~G~lY~tD~g---~------------~~~I~r~~~d- 154 (628)
T 4a0p_A 107 SKLDGQHR-------QVLVWKDLDSPRALALDPA---------EGFMYWTEWG---G------------KPKIDRAAMD- 154 (628)
T ss_dssp EETTSTTC-------EEEECSSCCCEEEEEEETT---------TTEEEEEECS---S------------SCEEEEEETT-
T ss_pred EecCCCcE-------EEEEeCCCCCcccEEEccC---------CCeEEEeCCC---C------------CCEEEEEeCC-
Confidence 99875421 1111122223456666641 0112211100 0 0001111111
Q ss_pred CceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 289 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 289 ~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|.....+. ..-...+.+++++++..++.+=+..+.|...|+..
T Consensus 155 G~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 155 GSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp SCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 11111111 23345788999998767877777788999999863
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=88.31 E-value=15 Score=33.53 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=24.4
Q ss_pred ccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 300 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 300 ~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
...-..++|+|++..++++-+....|+.++..
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 34457899999996566676778899997764
No 285
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.15 E-value=15 Score=33.26 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=20.7
Q ss_pred eeeEEeCCCCC-eEEEeeCCCcEEEEECC
Q psy4579 185 YGLSWNPSLNG-YLLSASDDHTICLWDIN 212 (368)
Q Consensus 185 ~~i~~~p~~~~-~l~s~s~dg~i~iwd~~ 212 (368)
+.|+|.|+ +. .|+.+...|.|++++..
T Consensus 17 ~~~a~~pd-G~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 17 VGALHSGD-GSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEEECCSS-SSCCEEEEETTTEEEEECTT
T ss_pred eEEEECCC-CCeEEEEEeCCceEEEEeCC
Confidence 39999998 54 45556789999999754
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=85.01 E-value=20 Score=31.61 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee-CCCcEE
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS-DDHTIC 207 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s-~dg~i~ 207 (368)
.....|++.+.+.+++++-...+.|.+.+++.... ...+...-.... .|++.|..+.++.+-. ..+.|.
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-------~~l~~~~~~~P~---~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-------KTLFRENGSKPR---AIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-------EEEEECSSCCEE---EEEEETTTTEEEEEECSSSCCEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-------EEEEeCCCCCcc---eEEEecccCeEEEEeCCCCCEEE
Confidence 45677888875436666767788899988875421 112221112232 8999997344444432 246888
Q ss_pred EEECCCC
Q psy4579 208 LWDINAT 214 (368)
Q Consensus 208 iwd~~~~ 214 (368)
..++...
T Consensus 229 ~~~~dG~ 235 (400)
T 3p5b_L 229 KGGLNGV 235 (400)
T ss_dssp EEETTSC
T ss_pred EEeCCCC
Confidence 8888654
No 287
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=84.61 E-value=17 Score=31.46 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=20.2
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEe
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWD 157 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd 157 (368)
..-..++|.|+| +++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG-~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGG-RYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETT-EEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCC-eEEEE-eCCCEEEEEe
Confidence 346789999998 65554 5569999887
No 288
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.89 E-value=20 Score=30.87 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=21.3
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 159 (368)
.-..|+|.|+| +.|..+...|.|++++..
T Consensus 19 ~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 19 HPWALAFLPDN-HGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SEEEEEECSTT-CCEEEEETTTEEEEEETT
T ss_pred CcEEEEEcCCC-CEEEEEeCCceEEEEeCC
Confidence 45789999998 724445567999998853
No 289
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=83.88 E-value=5.3 Score=35.58 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCCCceeeEecCCCC--CeeEEEeCCCcEEEEeCCCC
Q psy4579 127 TDKGGYGLSWNPSLN--GYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 127 h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~~ 161 (368)
...+|..+.|+|-+. ..|++-..|+.||+||+...
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 357899999999763 37889999999999999874
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=83.56 E-value=29 Score=32.49 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCCcccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 278 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.|.+..+|..++++......+ .++..-.....+ .++..|+.||.++.+|.++
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER--FAVWGGTMATAG-DLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETT-TEEEEECTTSEEEEEETTT
T ss_pred cCeEEEEECCCCCEEeEecCC--CCccCcceEecC-CEEEEECCCCeEEEEECCC
Confidence 466788888899887766532 222221222344 3444689999999999976
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=82.58 E-value=26 Score=31.21 Aligned_cols=95 Identities=7% Similarity=0.016 Sum_probs=50.6
Q ss_pred CcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCC---Cc-EEEEeCCCCCCCCcccccceeeeccccceecc
Q psy4579 109 GNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDD---HT-ICLWDINATPKENRVIDAKTIFTGHTAVVEVR 184 (368)
Q Consensus 109 g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---g~-v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~ 184 (368)
+.|+.++.....+..+........+++++++| +++++.... .. +...+...... ....+.....+
T Consensus 162 ~~I~~id~~~g~v~~~~~~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~------~~~~~~~~~~P---- 230 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT------ERLSLCNARGA---- 230 (433)
T ss_dssp SCEEEEETTTTEEEEECCCCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC------CEEEEEECSSB----
T ss_pred CCEEEEECCCCEEEEeecCCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee------ccccccccCCC----
Confidence 34444554333333333344567899999999 655554421 11 22233222110 00122222222
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
..+++.|+++.+.++-..++.|..+|..++
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 288999953666666667889999998755
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=81.24 E-value=24 Score=29.88 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee-ccccceecceeeEEeCCCCCeEEEee--CCCc
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEVRYGLSWNPSLNGYLLSAS--DDHT 205 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~i~~~p~~~~~l~s~s--~dg~ 205 (368)
.....+++.+.+..++++-...+.|.++++.... ...+. ..-... ..+++.|. +..|+... ..+.
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--------~~~l~~~~~~~P---~giavdp~-~g~ly~td~~~~~~ 146 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--------RKVLFWQELDQP---RAIALDPS-SGFMYWTDWGEVPK 146 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSSE---EEEEEEGG-GTEEEEEECSSSCE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--------EEEEEeCCCCCc---cEEEEeCC-CCEEEEEecCCCCE
Confidence 3466788887553666776777899999987542 12221 222222 28999987 44444444 3578
Q ss_pred EEEEECCCC
Q psy4579 206 ICLWDINAT 214 (368)
Q Consensus 206 i~iwd~~~~ 214 (368)
|...++...
T Consensus 147 I~r~~~dG~ 155 (318)
T 3sov_A 147 IERAGMDGS 155 (318)
T ss_dssp EEEEETTSC
T ss_pred EEEEEcCCC
Confidence 888887643
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=80.83 E-value=14 Score=31.34 Aligned_cols=68 Identities=6% Similarity=-0.019 Sum_probs=40.0
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee---ccccceecceeeEEeCCCCCeEEEeeCCCc
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT---GHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~ 205 (368)
..+.++.+.+++ .+++++. +|.+. +..+.+.. ...+. .....+ +++.|.+ +..++.++.+|.
T Consensus 250 ~~~~~v~~~~~~-~~~~~g~-~g~i~-~S~DgG~t-------W~~~~~~~~~~~~~---~~v~~~~--~~~~~~~G~~G~ 314 (327)
T 2xbg_A 250 VGFLDLAYRTPN-EVWLAGG-AGALL-CSQDGGQT-------WQQDVDVKKVPSNF---YKILFFS--PDQGFILGQKGI 314 (327)
T ss_dssp SCEEEEEESSSS-CEEEEES-TTCEE-EESSTTSS-------CEECGGGTTSSSCC---CEEEEEE--TTEEEEECSTTE
T ss_pred cceEEEEecCCC-EEEEEeC-CCeEE-EeCCCCcc-------cEEcCccCCCCCCe---EEEEEEC--CCceEEEcCCce
Confidence 458899999876 6666554 67663 34443321 12222 122334 4888875 445677788998
Q ss_pred EEEEEC
Q psy4579 206 ICLWDI 211 (368)
Q Consensus 206 i~iwd~ 211 (368)
|.-++-
T Consensus 315 i~~~~~ 320 (327)
T 2xbg_A 315 LLRYVT 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 877653
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=80.40 E-value=6 Score=37.58 Aligned_cols=75 Identities=7% Similarity=-0.046 Sum_probs=46.7
Q ss_pred CCceeeEecCCCCCeeEEEe-CCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEee-CC---
Q psy4579 129 KGGYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSAS-DD--- 203 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s-~d--- 203 (368)
....++++.+++ .+++.|+ .+..+.+||..+..= .....+...... .+++..++ +.+++.|+ .+
T Consensus 243 ~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W-----~~~~~~~~~R~~----~s~~~~~d-g~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 243 MFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSW-----IPGPDMQVARGY----QSSATMSD-GRVFTIGGSWSGGV 311 (656)
T ss_dssp CSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEE-----EECCCCSSCCSS----CEEEECTT-SCEEEECCCCCSSS
T ss_pred CccccccCCCCC-CEEEeCCCCCCceEEecCcCCce-----eECCCCCccccc----cceEEecC-CeEEEEeCcccCCc
Confidence 334457778888 8888888 456899999876421 011111111111 14556666 88888888 44
Q ss_pred --CcEEEEECCCC
Q psy4579 204 --HTICLWDINAT 214 (368)
Q Consensus 204 --g~i~iwd~~~~ 214 (368)
..+.+||..+.
T Consensus 312 ~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 312 FEKNGEVYSPSSK 324 (656)
T ss_dssp CCCCEEEEETTTT
T ss_pred ccccceEeCCCCC
Confidence 46899998764
No 295
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=79.06 E-value=48 Score=32.02 Aligned_cols=71 Identities=7% Similarity=-0.023 Sum_probs=43.0
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee---ccccceecceeeEEeCCCCCeEEEeeCCC
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT---GHTAVVEVRYGLSWNPSLNGYLLSASDDH 204 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~i~~~p~~~~~l~s~s~dg 204 (368)
...|.++...+++ . |-.|..++-+..+|..++. ...+. .....| +++...++ + .|-.|+. +
T Consensus 406 ~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~~v---~~i~~d~~-g-~lwigt~-~ 469 (781)
T 3v9f_A 406 SNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKK--------FQIIELEKNELLDV---RVFYEDKN-K-KIWIGTH-A 469 (781)
T ss_dssp CSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCE--------EEECCSTTTCCCCE---EEEEECTT-S-EEEEEET-T
T ss_pred CcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCc--------EEEeccCCCCCCeE---EEEEECCC-C-CEEEEEC-C
Confidence 4678899888876 4 4446666668888876542 11121 123345 37776654 4 4555555 5
Q ss_pred cEEEEECCCC
Q psy4579 205 TICLWDINAT 214 (368)
Q Consensus 205 ~i~iwd~~~~ 214 (368)
-+..+|..++
T Consensus 470 Gl~~~~~~~~ 479 (781)
T 3v9f_A 470 GVFVIDLASK 479 (781)
T ss_dssp EEEEEESSSS
T ss_pred ceEEEeCCCC
Confidence 5888998764
No 296
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=78.44 E-value=51 Score=31.94 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=48.1
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee---------ccccceecceeeEEeCCCCCeEE
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT---------GHTAVVEVRYGLSWNPSLNGYLL 198 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~i~~~p~~~~~l~ 198 (368)
...|.++...++| . |-.|..++-+..|+..++. ...+. .....| +++...++ +.+|.
T Consensus 356 ~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~v---~~i~~d~~-g~~lW 421 (795)
T 4a2l_A 356 DNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR--------FTSYTLQEDESARGIGSNNI---KAVYVDEK-KSLVY 421 (795)
T ss_dssp CSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC--------EEEECCC------CCSCSCE---EEEEEETT-TTEEE
T ss_pred CCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc--------EEEEecCCCCcccCCCCccE---EEEEEcCC-CCEEE
Confidence 4568999988886 4 5557777778888877643 11221 012345 47777665 55466
Q ss_pred EeeCCCcEEEEECCCC
Q psy4579 199 SASDDHTICLWDINAT 214 (368)
Q Consensus 199 s~s~dg~i~iwd~~~~ 214 (368)
.|+.++-|..+|..++
T Consensus 422 igt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 422 IGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEETTTEEEEEETTTC
T ss_pred EEeCcCceeEEeCCCC
Confidence 7777778999998775
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=77.46 E-value=49 Score=31.21 Aligned_cols=161 Identities=8% Similarity=0.046 Sum_probs=83.1
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec------cccceecceeeEEeCCCCCeEEEeeC
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG------HTAVVEVRYGLSWNPSLNGYLLSASD 202 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~i~~~p~~~~~l~s~s~ 202 (368)
+.+.+|+|.+....++.+=...+.|+.++...... ...+.. ....+ .++++.+...++..+-+.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------~~v~~~~~~~~~~~~~p---~glAvD~~~~nLY~td~~ 409 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------FTVVVSSVPSQNLEIQP---YDLSIDIYSRYIYWTCEA 409 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEC--------CCCE---EEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------eEEEEcccccccccCCc---ceEEeeccCCeEEEEcCC
Confidence 44678899886534555555667788887764321 122221 11123 277777763556667777
Q ss_pred CCcEEEEECCCCCCCCccccceee-eecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCc
Q psy4579 203 DHTICLWDINATPKENRVIDAKTI-FTGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF 281 (368)
Q Consensus 203 dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 281 (368)
.+.|.+.++.... ... +.........++++|. ...++........ ..+.....|
T Consensus 410 ~~~I~v~~~~G~~--------~~~l~~~~l~~Pr~iavdp~---------~g~ly~tD~g~~~--~~I~r~~~d------ 464 (628)
T 4a0p_A 410 TNVINVTRLDGRS--------VGVVLKGEQDRPRAVVVNPE---------KGYMYFTNLQERS--PKIERAALD------ 464 (628)
T ss_dssp TTEEEEEETTSCE--------EEEEEECTTCCEEEEEEETT---------TTEEEEEEEETTE--EEEEEEETT------
T ss_pred CCEEEEEECCCCe--------EEEEEeCCCCceeeEEEecC---------CCeEEEeecCCCC--CeEEEEeCC------
Confidence 8899999886431 112 2222344566777651 1122211111000 001000011
Q ss_pred ccccCCCCceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 282 GGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 282 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
|.....+....-...+.+++.+....|+.+=+..+.|...++.
T Consensus 465 -------G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 465 -------GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp -------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -------CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 1111111112234568899999876777666667889888885
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=73.26 E-value=62 Score=30.41 Aligned_cols=160 Identities=9% Similarity=0.061 Sum_probs=82.6
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCCcEEEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLW 209 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iw 209 (368)
.+.+|+|.+.+..++.+-...+.|+.+++..... ...+...-... .++++.+..+++..+-+..+.|.+.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------~~v~~~~~~~p---~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------QFVVTAQIAHP---DGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECSSCSCC---CEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-------EEEEECCCCCc---CceEEecccCcEEEEeCCCCcEEEE
Confidence 4567888886525555555678888888875421 12222221223 2777776536666666778899999
Q ss_pred ECCCCCCCCccccceeee-ecccccEeEEEEeeecccccCCCCccceEEEEeecCCcccccccccccCCCCCcccccCCC
Q psy4579 210 DINATPKENRVIDAKTIF-TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 288 (368)
Q Consensus 210 d~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 288 (368)
++..... ..+ ...-..-..++++|. ...++...... ...+.....|
T Consensus 420 ~~~G~~~--------~~l~~~~l~~P~~iavdp~---------~G~ly~tD~g~---~~~I~r~~~d------------- 466 (619)
T 3s94_A 420 RLNGTMR--------KILISEDLEEPRAIVLDPM---------VGYMYWTDWGE---IPKIERAALD------------- 466 (619)
T ss_dssp ETTSCSC--------EEEECTTCCSEEEEEEETT---------TTEEEEEECSS---SCEEEEEETT-------------
T ss_pred eCCCCeE--------EEEEECCCCCeeeEEEEcC---------CCcEEEecCCC---CCEEEEEccC-------------
Confidence 9876421 122 112233456666641 01122111100 0000000011
Q ss_pred CceeeeeecCcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 289 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 289 ~~~~~~~~~~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
|.....+....-...+.|++++.+..+..+=+..+.|...++..
T Consensus 467 G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 467 GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 11111111123345678889987657776666677888888753
No 299
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=72.96 E-value=5.3 Score=37.27 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=37.1
Q ss_pred CCCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 107 KGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 107 ~~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
.+|.+..+|.....+.....+...+........+ ..++.++.||.++.+|.++++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECC-CEEEEEcCCCeEEEEECCCCC
Confidence 3577888887654444444444444444444445 677779999999999999875
No 300
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=72.38 E-value=54 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCC
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINAT 161 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 161 (368)
..-+.|+|.|+| +++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCC
Confidence 345789999998 77766554457888876443
No 301
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=71.16 E-value=5.2 Score=37.45 Aligned_cols=54 Identities=6% Similarity=-0.036 Sum_probs=34.8
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
+|.+.-||.....+.....+..++..-.....+ .+++.|+.||.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCC-CEEEEECCCCcEEEEECCCCC
Confidence 577888887654443333333333332222334 678889999999999999885
No 302
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=67.12 E-value=6 Score=37.77 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=38.2
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
+|.|..||..+..+.....+...+....+...+ .+++.++.||.++.||.++++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCC-CEEEEECCcccchhhhhhcCh
Confidence 477778887654444444444455555555566 788899999999999999875
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=66.28 E-value=37 Score=29.01 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=48.2
Q ss_pred CceeeEecCCCCCeeEEEeCC-CcEEEEeCCCCCCCCcccccceeee------ccccceecceeeEEeCCCCCeEEEeeC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDD-HTICLWDINATPKENRVIDAKTIFT------GHTAVVEVRYGLSWNPSLNGYLLSASD 202 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~i~~~p~~~~~l~s~s~ 202 (368)
....++..++| +..++++.- +.|...+..... ...+. ......+ .|+++|+ +..|+....
T Consensus 138 ~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--------~~~~~~~~~~~~~~~G~n---GIv~~pd-g~~Liv~~~ 204 (334)
T 2p9w_A 138 GVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--------VSTFAWESGNGGQRPGYS---GITFDPH-SNKLIAFGG 204 (334)
T ss_dssp EEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--------EEEEEECCCCSSSCCSCS---EEEEETT-TTEEEEESS
T ss_pred CCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--------EeeeeecCCCcccccCcc---eEEEeCC-CCEEEEEcC
Confidence 47899999999 888888877 776666654321 11111 1111132 8999999 776666655
Q ss_pred CCcEEEEECCC
Q psy4579 203 DHTICLWDINA 213 (368)
Q Consensus 203 dg~i~iwd~~~ 213 (368)
.|.+.-+|++.
T Consensus 205 ~g~L~~fD~~~ 215 (334)
T 2p9w_A 205 PRALTAFDVSK 215 (334)
T ss_dssp SSSEEEEECSS
T ss_pred CCeEEEEcCCC
Confidence 99999999884
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.22 E-value=31 Score=34.45 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=25.3
Q ss_pred eeeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 185 YGLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 185 ~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
.++...++ ..++++-+.|+++|+|++.++
T Consensus 239 ~~~~~~~~-~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 239 ISMIFLST-YNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp EEEEEETT-TTEEEEEETTCEEEEEETTTT
T ss_pred EEEeecCC-CcEEEEEECCCEEEEEECCCC
Confidence 37777776 789999999999999999887
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=64.61 E-value=68 Score=27.56 Aligned_cols=107 Identities=13% Similarity=0.241 Sum_probs=65.4
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccccee-ccee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE-VRYG 186 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~ 186 (368)
...++++|++.+...........|.-=+|-.. +.|+-.. +..|.-|+++.... |.+.+..|..-.. -+..
T Consensus 86 g~~LQiFnletK~klks~~~~e~VvfWkWis~--~~L~lVT-~taVyHWs~~~~s~------P~kvFdR~~~L~~~QIIn 156 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQ------PVKMFDRHSSLAGCQIIN 156 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--SEEEEEE-SSEEEEEESSTTCC------CEEEEECCGGGTTCEEEE
T ss_pred CCeEEEechHHhhhhcceecCCccEEEEecCC--CeEEEEc-CCcEEEEcccCCCC------CceeeecchhcccceEEE
Confidence 56789999887665555555667777777655 4455444 56899999976332 5666666543211 0014
Q ss_pred eEEeCCCCCeEEEee-------CCCcEEEEECCCCCCCCccccceeeeecccc
Q psy4579 187 LSWNPSLNGYLLSAS-------DDHTICLWDINATPKENRVIDAKTIFTGHTA 232 (368)
Q Consensus 187 i~~~p~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
-.-+++ .+.++-.+ -.|.+.+|..+.+ ....++||..
T Consensus 157 Y~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~er~--------~sQ~ieGhaa 200 (365)
T 2xzh_A 157 YRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRK--------VSQPIEGHAA 200 (365)
T ss_dssp EEECTT-SCEEEEEEEEEETTEEEEEEEEEETTTT--------EEEEECCSEE
T ss_pred EEECCC-CCEEEEEeEeccCCccceeEEEEeeccc--------ccceeeeeee
Confidence 444565 55544433 2478999998775 2355667754
No 306
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=64.02 E-value=1.4e+02 Score=31.52 Aligned_cols=94 Identities=12% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeeccc----cceec
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT----AVVEV 183 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~----~~v~~ 183 (368)
..+++|+|++.+..........+|.-=+|-.. +.|+-.+ +..|.-|++..... |.+.+..|. ..|
T Consensus 85 g~~lQiFnl~~k~klks~~~~e~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~------P~k~fdR~~~L~~~QI-- 153 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQ------PVKMFDRHSSLAGCQI-- 153 (1630)
T ss_pred CCeEEEeehHHhhhhcccccCCCceEEEecCC--CeeEEEc-CCeEEEeccCCCCc------cHHHHhcchhcccCee--
Confidence 57888999887655554445566766677654 3444443 56899999975332 444444442 222
Q ss_pred ceeeEEeCCCCCeEEEee-------CCCcEEEEECCCC
Q psy4579 184 RYGLSWNPSLNGYLLSAS-------DDHTICLWDINAT 214 (368)
Q Consensus 184 ~~~i~~~p~~~~~l~s~s-------~dg~i~iwd~~~~ 214 (368)
..-.-+++ ...++..| -.|.+.+|..+.+
T Consensus 154 -inY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 154 -INYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred -EEeeeCCC-CCeEEEEeeccCCCcccceeeeeecccc
Confidence 14444555 55544332 4588999988775
No 307
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=57.77 E-value=20 Score=28.78 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=39.7
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee--ccccceecceeeEEeCCCCCeEEEeeCCCcEE
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVEVRYGLSWNPSLNGYLLSASDDHTIC 207 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~ 207 (368)
.+.+++|+|+| .+.+. .+|.+.-.+..+..... -......+. +-.. -. ++.|.|+ +.+.++ .||.|.
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~-F~---a~~fD~~-G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQ-FQ---FLFFDPN-GYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGG-CS---EEEECTT-SCEEEE--ETTEEE
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCccc-ccccccEeccccccc-ce---EEEECCC-CCEEEe--CCCEEE
Confidence 56699999988 66666 67766555543322110 000111111 1122 22 7888887 666666 569887
Q ss_pred EEEC
Q psy4579 208 LWDI 211 (368)
Q Consensus 208 iwd~ 211 (368)
-++.
T Consensus 111 r~~p 114 (236)
T 1tl2_A 111 KASP 114 (236)
T ss_dssp EESC
T ss_pred EeCC
Confidence 7764
No 308
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=57.73 E-value=14 Score=34.77 Aligned_cols=54 Identities=9% Similarity=-0.078 Sum_probs=34.2
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
.|.+.-||.....+.....+..++..-.....+ .+++.++.||.++.+|.++++
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecC-CEEEEECCCCeEEEEECCCCC
Confidence 467777777654444433333333322223344 677789999999999999985
No 309
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=53.14 E-value=1.1e+02 Score=26.39 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCcccCCCCC--eeeeeccc------cCC-CCceeeEe--cCCCCC-eeEEEeCCCcEEEEeCCCCCCCCcccccceeee
Q psy4579 108 GGNVQLPNED--AQFDASNY------DTD-KGGYGLSW--NPSLNG-YLLSASDDHTICLWDINATPKENRVIDAKTIFT 175 (368)
Q Consensus 108 ~g~i~i~~~~--~~~~~~~~------~h~-~~v~~l~~--sp~~~~-~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 175 (368)
+++|.++.++ ........ ... ..+..+++ +|.+.. +++....+|.+..|++..........+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5778888543 22222221 122 66777888 775423 677788889999999854221111123445555
Q ss_pred ccccceecceeeEEeCCCCCeEEEeeCCCcEEEEECC
Q psy4579 176 GHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212 (368)
Q Consensus 176 ~h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~ 212 (368)
.. +.+. .+...+. ...|+.+-+|.-|..+|.+
T Consensus 178 lg-sq~E---gcvvDd~-~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 178 MN-SQTE---GMAADDE-YGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CS-SCEE---EEEEETT-TTEEEEEETTTEEEEEECS
T ss_pred CC-CCcc---eEEEcCC-CCeEEEecccceEEEEeCC
Confidence 43 3454 7778877 8889999998766666643
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=52.71 E-value=2.1e+02 Score=29.34 Aligned_cols=33 Identities=3% Similarity=0.053 Sum_probs=25.8
Q ss_pred CcccceeEEEEeCCCCcEEEEecCCCeEEEEECCC
Q psy4579 298 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 332 (368)
Q Consensus 298 ~h~~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~~ 332 (368)
.+...++++.|-.++ .++ .+..+|++.+.....
T Consensus 967 ~~~~~vta~~~ld~~-t~l-~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFL-GAENAFNLFVCQKDS 999 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEE-EEETTSEEEEEEECT
T ss_pred cccccEEEEEEEccC-cEE-EEcCCCcEEEEecCC
Confidence 466788999988665 444 679999999998865
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=48.67 E-value=66 Score=29.27 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=46.8
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCC-------CCCCCCccccc----c-eeeec-cccceecceeeEEeCCCCCe
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDIN-------ATPKENRVIDA----K-TIFTG-HTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-------~~~~~~~~~~~----~-~~~~~-h~~~v~~~~~i~~~p~~~~~ 196 (368)
....++.+|++..++++-..++.|..+|+. ++......... . ..+.. ..... +.|+|+|+ ++.
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p---~~ia~~p~-G~~ 323 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE---FQIFIHPT-GKY 323 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC---EEEEECTT-SSE
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc---eEEEEcCC-CCE
Confidence 346788899653677777788999999987 44320000000 0 11111 11212 48999999 774
Q ss_pred -EEEeeCCCcEEEEECC
Q psy4579 197 -LLSASDDHTICLWDIN 212 (368)
Q Consensus 197 -l~s~s~dg~i~iwd~~ 212 (368)
.++-+....|+.+|..
T Consensus 324 lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 324 AYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEecC
Confidence 5555667788886654
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.24 E-value=1.8e+02 Score=26.19 Aligned_cols=109 Identities=13% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeecccccee-ccee
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE-VRYG 186 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~ 186 (368)
...++++|++.+...........|.-=+|-.. +.|+-.. +..|.-|++..... |.+.+..|..-.. -+..
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l~lVT-~taVyHWsi~~~s~------P~kvFdR~~~L~~~QIIn 155 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQ------PVKMFDRHSSLAGCQIIN 155 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEEEEEC-SSEEEEEESSSSCC------CEEEEECCGGGTTCEEEE
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCC--CeEEEEc-CCeeEEecccCCCC------chhheecchhcccceEEE
Confidence 56788999887655554444556766677654 4555544 57899999976332 5666666543211 0024
Q ss_pred eEEeCCCCCeEEEee-------CCCcEEEEECCCCCCCCccccceeeeecccccE
Q psy4579 187 LSWNPSLNGYLLSAS-------DDHTICLWDINATPKENRVIDAKTIFTGHTAVV 234 (368)
Q Consensus 187 i~~~p~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 234 (368)
..-+++ .+.++-.| -.|.+.+|..+.+. ...+.||...-
T Consensus 156 Y~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~er~~--------sQ~ieGhaa~F 201 (494)
T 1bpo_A 156 YRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRKV--------SQPIEGHAASF 201 (494)
T ss_dssp EEECTT-SSEEEEEEEEEETTEEEEEEEEEESTTCC--------EEEECCSEEEE
T ss_pred EEECCC-CCeEEEEeecccCCcccceEEEeeccccc--------cchheeeeeee
Confidence 445666 56544333 35789999988752 35667775544
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=43.47 E-value=1.6e+02 Score=25.35 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=59.8
Q ss_pred CCcccCCCCCeeeeeccccCCCCceeeEecC--CCCCeeEEEeC---CCcEEEEeCCCCC-CCCcccc-cceeee----c
Q psy4579 108 GGNVQLPNEDAQFDASNYDTDKGGYGLSWNP--SLNGYLLSASD---DHTICLWDINATP-KENRVID-AKTIFT----G 176 (368)
Q Consensus 108 ~g~i~i~~~~~~~~~~~~~h~~~v~~l~~sp--~~~~~lasg~~---dg~v~iwd~~~~~-~~~~~~~-~~~~~~----~ 176 (368)
.|.+++|+.+.+....+.+|.+.-..+...- ....+++-+.. .+.++|-++.... ......+ ....+- .
T Consensus 179 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 179 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp EEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT
T ss_pred ceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc
Confidence 3677788877766666666755443333321 11123333322 2588888885541 1111100 111111 1
Q ss_pred cccceecceeeEEeCCCCCeEEEeeCCCcEEEEECCCCC
Q psy4579 177 HTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATP 215 (368)
Q Consensus 177 h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 215 (368)
..-+| ++..++. ...+..-..-|.|.+||++++.
T Consensus 259 ~DFPV----amqvs~k-ygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 259 NDFPV----AMQISEK-HDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp TCCEE----EEEEETT-TTEEEEEETTSEEEEEETTTCC
T ss_pred CCceE----EEEeccc-CCEEEEEeCCcEEEEEEcccCc
Confidence 33455 8888887 7888888999999999999983
No 314
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.44 E-value=67 Score=32.82 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred eeEEeCCCCCeEEEeeCCCcEEEEECCCC
Q psy4579 186 GLSWNPSLNGYLLSASDDHTICLWDINAT 214 (368)
Q Consensus 186 ~i~~~p~~~~~l~s~s~dg~i~iwd~~~~ 214 (368)
+++..++ ..++++-+.|+++|+|++.++
T Consensus 242 s~~~~~~-~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 242 SMIFLST-YNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CCEEETT-TTEEEEEBTTCEEEEEETTTT
T ss_pred EeeccCC-ccEEEEEeCCCEEEEEECCCC
Confidence 6677776 789999999999999999987
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=42.53 E-value=1.1e+02 Score=24.51 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=37.2
Q ss_pred ceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeeec-cccceecceeeEEeCCCCCeEEEeeCCCcE
Q psy4579 131 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVEVRYGLSWNPSLNGYLLSASDDHTI 206 (368)
Q Consensus 131 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~i~~~p~~~~~l~s~s~dg~i 206 (368)
-.++.|.|+| .+.++ .||.|.-++-.+.....=... ...+.. --..+. .|.|.|+ +.+.+.. |+.+
T Consensus 90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~-a~~vg~~gw~~~~---~lff~p~-G~Lyav~--dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIAR-ATEVGSGGWSGFK---FLFFHPN-GYLYAVH--GQQF 156 (236)
T ss_dssp CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHH-SEEEECSSGGGEE---EEEECTT-SCEEEEE--TTEE
T ss_pred ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceecc-ccEeccCCCCceE---EEEECCC-ceEEEEe--CCcE
Confidence 4678899998 77766 569887776543322110000 011111 113444 8999998 6665555 7773
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=42.29 E-value=2.6e+02 Score=29.58 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=50.4
Q ss_pred CCcccCCCCCee--eeeccccC----CCCceeeEecCCCCCeeEEEe-------CCCcEEEEeCCCCCCCCcccccceee
Q psy4579 108 GGNVQLPNEDAQ--FDASNYDT----DKGGYGLSWNPSLNGYLLSAS-------DDHTICLWDINATPKENRVIDAKTIF 174 (368)
Q Consensus 108 ~g~i~i~~~~~~--~~~~~~~h----~~~v~~l~~sp~~~~~lasg~-------~dg~v~iwd~~~~~~~~~~~~~~~~~ 174 (368)
+..|..|+.++. ...-+..| ...|-.-+.+++. ++++..| ..|.+.+|.++... .+.+
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~--------sQ~i 194 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV--------SQPI 194 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc--------chhh
Confidence 445777887542 11111122 3456667778887 5555332 45889999988763 3556
Q ss_pred eccccceecceeeEE--eCCCCCeEEEeeC---CCcEEEEECCCC
Q psy4579 175 TGHTAVVEVRYGLSW--NPSLNGYLLSASD---DHTICLWDINAT 214 (368)
Q Consensus 175 ~~h~~~v~~~~~i~~--~p~~~~~l~s~s~---dg~i~iwd~~~~ 214 (368)
.||.+.-. .+.. ++....+++-+.. .++++|-++...
T Consensus 195 egha~~F~---~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 195 EGHAASFA---QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred hHhHhhhh---eeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 66654331 2221 1111223332222 268888888654
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=41.91 E-value=49 Score=28.36 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=41.6
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceee----eccccceecceeeEEeCC---CCCeEEEeeC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF----TGHTAVVEVRYGLSWNPS---LNGYLLSASD 202 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~i~~~p~---~~~~l~s~s~ 202 (368)
.-..++|.|+| +++++ ..+|.|++++ .+.. ..+..+ .+...+ ..|+|+|+ ++.+.++-..
T Consensus 32 ~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~-----~~~~~~~v~~~g~~~p----~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 32 VPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRL-----STYAELSVYHRGESGL----LGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEE-----EEEEECCCCCSTTCSE----EEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCc-----cEeecceEeecCCCCc----eeEEECCCCCCCCEEEEEEec
Confidence 45689999998 65555 5569999988 2221 011111 112233 39999996 3444444443
Q ss_pred C-----CcEEEEECCC
Q psy4579 203 D-----HTICLWDINA 213 (368)
Q Consensus 203 d-----g~i~iwd~~~ 213 (368)
. +.|..++...
T Consensus 99 ~~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLG 114 (352)
T ss_dssp CTTSSEEEEEEEEECS
T ss_pred CCCCCccEEEEEEeCC
Confidence 2 6677787764
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=38.65 E-value=1.1e+02 Score=26.45 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=41.4
Q ss_pred CceeeEecCCCCCeeEEEeC---C------------CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCC
Q psy4579 130 GGYGLSWNPSLNGYLLSASD---D------------HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLN 194 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~---d------------g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~ 194 (368)
..+.+.+.++| .+.++... | ..=++|.+..+. ......+-..+ ..|+|+|+ +
T Consensus 166 ~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-------~~~~~~~l~~p----NGia~spD-g 232 (355)
T 3sre_A 166 SVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-------VRVVAEGFDFA----NGINISPD-G 232 (355)
T ss_dssp SEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-------CEEEEEEESSE----EEEEECTT-S
T ss_pred CCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCe-------EEEeecCCccc----CcceECCC-C
Confidence 46788999988 77666541 1 223344333221 11222222222 39999999 6
Q ss_pred CeE-EEeeCCCcEEEEECCC
Q psy4579 195 GYL-LSASDDHTICLWDINA 213 (368)
Q Consensus 195 ~~l-~s~s~dg~i~iwd~~~ 213 (368)
..| ++-+..+.|..||+..
T Consensus 233 ~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEECC
Confidence 554 4456678999999864
No 319
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=36.12 E-value=3e+02 Score=26.37 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=44.5
Q ss_pred CCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCCCCcccccceeee----------ccccceecceeeEEeCCCCCeE
Q psy4579 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT----------GHTAVVEVRYGLSWNPSLNGYL 197 (368)
Q Consensus 128 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~i~~~p~~~~~l 197 (368)
...|.++...++| . |-.|..++-|..++..... ...+. .....| .++...++ ..|
T Consensus 312 ~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~v---~~i~~d~~--g~l 376 (781)
T 3v9f_A 312 NASARYIFQDSFN-N-IWIGTWGGGINFISNAPPT--------FHTWSYSPTQMNESSLSNKVV---SSVCDDGQ--GKL 376 (781)
T ss_dssp SSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCS--------CEEEC----CCCSSCCSSSCE---EEEEECTT--SCE
T ss_pred CCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCc--------ceeeccCccccccCCCCCcce---EEEEEcCC--CCE
Confidence 4568899888887 4 5556666777888876542 12121 012335 37776654 445
Q ss_pred EEeeCCCcEEEEECCCC
Q psy4579 198 LSASDDHTICLWDINAT 214 (368)
Q Consensus 198 ~s~s~dg~i~iwd~~~~ 214 (368)
-.|+.++-|..||..++
T Consensus 377 Wigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 377 WIGTDGGGINVFENGKR 393 (781)
T ss_dssp EEEEBSSCEEEEETTEE
T ss_pred EEEeCCCcEEEEECCCC
Confidence 66776777888987653
No 320
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=34.87 E-value=1.4e+02 Score=27.79 Aligned_cols=83 Identities=10% Similarity=0.106 Sum_probs=52.8
Q ss_pred cCCCCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCCC--CCccccc----ceeeeccccceecceeeEEeCCCCCeEEE
Q psy4579 126 DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPK--ENRVIDA----KTIFTGHTAVVEVRYGLSWNPSLNGYLLS 199 (368)
Q Consensus 126 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~~~~~----~~~~~~h~~~v~~~~~i~~~p~~~~~l~s 199 (368)
.-.+....+..+|+|...+++|-.+.++.++|+++... ..+.+++ ......-.++. ..+|.++ ++...|
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl----Ht~Fd~~-G~aYTt 394 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL----HTTFDGR-GNAYTT 394 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE----EEEECSS-SEEEEE
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc----EEEECCC-CceEee
Confidence 34455667899999944455555789999999985211 0000011 11222223444 8899987 666666
Q ss_pred eeCCCcEEEEECCC
Q psy4579 200 ASDDHTICLWDINA 213 (368)
Q Consensus 200 ~s~dg~i~iwd~~~ 213 (368)
---|..|.-|++..
T Consensus 395 lfidSqvvkWni~~ 408 (638)
T 3sbq_A 395 LFIDSQVVKWNMEE 408 (638)
T ss_dssp ETTTTEEEEEEHHH
T ss_pred eeecceEEEEeccH
Confidence 67899999999865
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.06 E-value=57 Score=32.58 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=26.7
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
.+.++...++. .++++-+.|+++|+|++.++.
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCC
Confidence 45667777776 799999999999999998874
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=27.68 E-value=64 Score=28.91 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=21.7
Q ss_pred cceeEEEEeCCCCcEEEEecCCCeEEEEECC
Q psy4579 301 GEVNRARYMPQNPCVIATKTPSSDVLVFDYT 331 (368)
Q Consensus 301 ~~i~~~~~~p~~~~~lasgs~Dg~i~iwd~~ 331 (368)
.....++|.|+| .++++-...+.|++++..
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPE 56 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTT
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECC
Confidence 456789999999 677664444578888753
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=27.27 E-value=1.9e+02 Score=23.50 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=32.9
Q ss_pred CeeEEEeCC-----CcEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCCC-----cEEEEEC
Q psy4579 142 GYLLSASDD-----HTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDH-----TICLWDI 211 (368)
Q Consensus 142 ~~lasg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~dg-----~i~iwd~ 211 (368)
.+++.|+.+ ..+.+||+.+.. ...+.....+.. ..++... + +.+++.|+.++ .+.+||+
T Consensus 206 ~iyv~GG~~~~~~~~~~~~yd~~~~~--------W~~~~~~~~~r~-~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 206 LLYAVGGHDGPLVRKSVEVYDPTTNA--------WRQVADMNMCRR-NAGVCAV-N-GLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EEEEECCBSSSSBCCCEEEEETTTTE--------EEEECCCSSCCB-SCEEEEE-T-TEEEEECCBCSSSBCCCEEEEET
T ss_pred EEEEECCCCCCcccceEEEEeCCCCC--------EeeCCCCCCccc-cCeEEEE-C-CEEEEECCcCCCcccccEEEEcC
Confidence 677777764 368888887642 111111110000 0122222 3 67777887654 4788887
Q ss_pred CCC
Q psy4579 212 NAT 214 (368)
Q Consensus 212 ~~~ 214 (368)
.+.
T Consensus 275 ~~~ 277 (302)
T 2xn4_A 275 TTD 277 (302)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=24.23 E-value=2.9e+02 Score=22.43 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=14.4
Q ss_pred CeeEEEeCC------CcEEEEeCCCC
Q psy4579 142 GYLLSASDD------HTICLWDINAT 161 (368)
Q Consensus 142 ~~lasg~~d------g~v~iwd~~~~ 161 (368)
.+++.|+.+ ..+.+||..+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 677777765 45888888764
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=24.13 E-value=2.8e+02 Score=22.35 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=32.4
Q ss_pred CeeEEEeCCC-----cEEEEeCCCCCCCCcccccceeeeccccceecceeeEEeCCCCCeEEEeeCC-----CcEEEEEC
Q psy4579 142 GYLLSASDDH-----TICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDD-----HTICLWDI 211 (368)
Q Consensus 142 ~~lasg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~l~s~s~d-----g~i~iwd~ 211 (368)
.+++.|+.++ .+.+||..+..= .....+....... ++... + +.+++.|+.+ ..+.+||+
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W-----~~~~~~p~~r~~~----~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQW-----SMLGDMQTAREGA----GLVVA-S-GVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEE-----EEEEECSSCCBSC----EEEEE-T-TEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeE-----EECCCCCCCcccc----eEEEE-C-CEEEEECCCCCCcccceEEEEeC
Confidence 6777776543 577888766421 0111111111111 22222 3 6777777765 35888888
Q ss_pred CCC
Q psy4579 212 NAT 214 (368)
Q Consensus 212 ~~~ 214 (368)
.+.
T Consensus 183 ~~~ 185 (301)
T 2vpj_A 183 HTG 185 (301)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 326
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.39 E-value=65 Score=32.92 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=25.8
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
.+.++...++. .++++-+.|+++|+|++.++.
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCC
Confidence 34555666666 799999999999999998874
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=23.25 E-value=3e+02 Score=22.27 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=14.7
Q ss_pred CCCcEEEEecCCC-----eEEEEECCC
Q psy4579 311 QNPCVIATKTPSS-----DVLVFDYTK 332 (368)
Q Consensus 311 ~~~~~lasgs~Dg-----~i~iwd~~~ 332 (368)
++ .+++.|+.++ .+.+||+..
T Consensus 251 ~~-~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 251 NG-LLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred CC-EEEEECCcCCCcccccEEEEcCCC
Confidence 44 6777877654 488899875
No 328
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=22.45 E-value=1.3e+02 Score=27.00 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=22.2
Q ss_pred CceeeEecCCCCCeeEEEeCCCcEEEEeCC
Q psy4579 130 GGYGLSWNPSLNGYLLSASDDHTICLWDIN 159 (368)
Q Consensus 130 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 159 (368)
.-+.|+|.|+|...|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999983245566778999999754
No 329
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.42 E-value=99 Score=29.61 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCceeeEecCCCCCeeEEEeCCCcEEEEeCCCCC
Q psy4579 129 KGGYGLSWNPSLNGYLLSASDDHTICLWDINATP 162 (368)
Q Consensus 129 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 162 (368)
..|.|+.+. . .++++-+.|.++|+|+++++.
T Consensus 222 ~~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLFH--E-RYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEET--T-TEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEeccC--C-cEEEEEEcCCeEEEEEcCCCc
Confidence 456666554 3 799999999999999999874
No 330
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=21.22 E-value=2.7e+02 Score=23.64 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=34.7
Q ss_pred ceeeEecCCCCCeeEEEeC-------------CCcEEEEeCCCCCCC-CcccccceeeeccccceecceeeEEeCCCCCe
Q psy4579 131 GYGLSWNPSLNGYLLSASD-------------DHTICLWDINATPKE-NRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196 (368)
Q Consensus 131 v~~l~~sp~~~~~lasg~~-------------dg~v~iwd~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~i~~~p~~~~~ 196 (368)
...|.|.|+| .++++-+. .|.|...+....... .........-.++..+. .++|+|+.+.+
T Consensus 137 ~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~----Gla~d~~~g~l 211 (354)
T 3a9g_A 137 GGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQ----GIDWHRASGVM 211 (354)
T ss_dssp CCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCC----EEEECTTTCCE
T ss_pred CceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcc----eEEEeCCCCCE
Confidence 4679999999 76666432 244555554432000 00000122334666665 99999953665
Q ss_pred EEEe
Q psy4579 197 LLSA 200 (368)
Q Consensus 197 l~s~ 200 (368)
+++-
T Consensus 212 ~v~d 215 (354)
T 3a9g_A 212 VATE 215 (354)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=21.17 E-value=3.4e+02 Score=22.10 Aligned_cols=21 Identities=0% Similarity=0.050 Sum_probs=14.5
Q ss_pred CCeEEEeeCC-----CcEEEEECCCC
Q psy4579 194 NGYLLSASDD-----HTICLWDINAT 214 (368)
Q Consensus 194 ~~~l~s~s~d-----g~i~iwd~~~~ 214 (368)
+.+++.|+.+ ..+.+||+.+.
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTT
T ss_pred CEEEEEcCCCCCcccccEEEECCCCC
Confidence 6677777654 35788888764
Done!