RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4579
(368 letters)
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 55.2 bits (131), Expect = 4e-09
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV--VEVRYGLSW 189
+ +S S + +S S D + +WD EN + + F + + V+V +
Sbjct: 18 FSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 74
Query: 190 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 225
+ + + S + + I + +VI K
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 110
Score = 44.5 bits (103), Expect = 1e-05
Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 4/102 (3%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
+ + + + S + + I + +VI K + L W S
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 194 NG----YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231
+ L++ T +W + E+ + T
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Score = 39.5 bits (90), Expect = 5e-04
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 168 IDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF 227
I H A + + +S S + +S S D + +WD EN + + F
Sbjct: 4 IATANAGKAHDADI---FSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF 57
Query: 228 TGHTAVVEDYSIHRLILGTHTSDEQNHLLIASV 260
+ + H +L D L+A+
Sbjct: 58 VHKSGL-----HHVDVLQAIERDAFELCLVATT 85
Score = 36.8 bits (83), Expect = 0.003
Identities = 15/162 (9%), Positives = 47/162 (29%), Gaps = 10/162 (6%)
Query: 103 YDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNG----YLLSASDDHTICLWDI 158
Y + + + + + L W S + L++ T +W
Sbjct: 94 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153
Query: 159 NATPKENRVIDAKTIFTGH------TAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212
+ E+ + T + + ++ S + S G + + ++ T+ + +++
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS 213
Query: 213 ATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNH 254
++ ++ + L D +
Sbjct: 214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255
Score = 31.4 bits (69), Expect = 0.16
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE-VRYGLSWNPSLNGYLLSAS 201
L SA D + WD+ K I T H +E L+ + + L
Sbjct: 303 TLCSAGWDGKLRFWDV----KTKERI---TTLNMHCDDIEIEEDILAVDEHGD-SLAEPG 354
Query: 202 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSI 239
++D+ K R + V D SI
Sbjct: 355 ------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 386
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 53.6 bits (127), Expect = 1e-08
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
+S++ S LL+ DD +WD K +R + GH V L
Sbjct: 276 VSFSKS-GRLLLAGYDDFNCNVWDA---LKADRA----GVLAGHDNRV---SCLGVTDD- 323
Query: 194 NGYLLSASDDHTICLWD 210
+ + S D + +W+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 40.9 bits (94), Expect = 2e-04
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
+ + P+ N + SDD T L+D+ A + I G T+V S++
Sbjct: 230 NAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSV-------SFSK 280
Query: 192 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
S LL+ DD +WD K +R + GH V +
Sbjct: 281 S-GRLLLAGYDDFNCNVWDA---LKADRA----GVLAGHDNRVSCLGVT 321
Score = 36.6 bits (83), Expect = 0.003
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 136 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG 195
+S + D + LWD+ + FTGH + + + + P+ N
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR-EGMCRQT------FTGHESDI---NAICFFPNGN- 239
Query: 196 YLLSASDDHTICLW 209
+ SDD T L+
Sbjct: 240 AFATGSDDATCRLF 253
Score = 32.4 bits (72), Expect = 0.071
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWD 157
L + + S D + +W+
Sbjct: 316 SCLGVTDD-GMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 0.19
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 171 KTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDIN 212
+ GH A + Y + W + L+SAS D + +WD
Sbjct: 48 RRTLRGHLAKI---YAMHWGTD-SRLLVSASQDGKLIIWDSY 85
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 53.7 bits (127), Expect = 1e-08
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
+WN + ++H + +++ H V G+ W P
Sbjct: 11 SCHAWNKD-RTQIAICPNNHEVHIYEK-----SGNKWVQVHELKEHNGQV---TGVDWAP 61
Query: 192 SLNGYLLSASDDHTICLWDIN 212
+ +++ D +W +
Sbjct: 62 D-SNRIVTCGTDRNAYVWTLK 81
Score = 38.3 bits (87), Expect = 0.001
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 146 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205
+ D A+ E + + H V LS + + D
Sbjct: 294 GLTARERFQNLDKKASS-EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352
Query: 206 ICLWDINA 213
+ +WD+ +
Sbjct: 353 MSIWDVRS 360
Score = 29.4 bits (64), Expect = 0.62
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINA 160
LS + + D + +WD+ +
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIWDVRS 360
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 52.6 bits (124), Expect = 3e-08
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 141 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSA 200
+ + D TI +WD+ T K + +T + + + + NG ++S
Sbjct: 263 SQKFATVGADATIRVWDVT-TSKCVQK------WTLDKQQLGNQ-QVGVVATGNGRIISL 314
Query: 201 SDDHTICLWDI 211
S D T+ +++
Sbjct: 315 SLDGTLNFYEL 325
Score = 40.3 bits (92), Expect = 2e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-TAVVEVRYGLSWNPS 192
LS++P+ N + D + K V+ FTGH ++VV + ++P
Sbjct: 23 LSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQ----FTGHGSSVVTT---VKFSPI 74
Query: 193 LNG-YLLSASDDHTICLWDINATPKENRVI-DAKTIFTGHTAVVEDYSIH 240
YL S + + +W + N V + K+ F + D S
Sbjct: 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Score = 33.7 bits (75), Expect = 0.026
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDI 158
+ + NG ++S S D T+ +++
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYEL 325
Score = 29.5 bits (64), Expect = 0.62
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 194 NGYLLSASDDHTICLWDIN 212
+ + D TI +WD+
Sbjct: 263 SQKFATVGADATIRVWDVT 281
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 52.1 bits (123), Expect = 3e-08
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
G+ ++ ++LS +DD T+ +WD K R + H V L ++
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDY----KNKRCMK---TLNAHEHFV---TSLDFHK 299
Query: 192 SLNGYLLSASDDHTICLWD 210
+ Y+++ S D T+ +W+
Sbjct: 300 T-APYVVTGSVDQTVKVWE 317
Score = 44.3 bits (103), Expect = 1e-05
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 127 TDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYG 186
++ G + +LLS S D TI +WD++ T GH V G
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMT------LVGHDNWV---RG 252
Query: 187 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
+ ++ ++LS +DD T+ +WD K R + H V H
Sbjct: 253 VLFHSG-GKFILSCADDKTLRVWDY----KNKRCMK---TLNAHEHFVTSLDFH 298
Score = 40.1 bits (92), Expect = 2e-04
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 171 KTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH 230
K +GH + V + ++P ++SAS+D TI +WD D + GH
Sbjct: 10 KYALSGHRSPV---TRVIFHPV-FSVMVSASEDATIKVWDYETG-------DFERTLKGH 58
Query: 231 TAVVEDYSIH 240
T V+D S
Sbjct: 59 TDSVQDISFD 68
Score = 33.2 bits (74), Expect = 0.038
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 181
+ ++P ++SAS+D TI +WD D + GHT V
Sbjct: 21 TRVIFHPV-FSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSV 62
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 131 GYGLSWNPSLNG-YLLSASDDHTICLWD---------INATPKENRVIDAKTIFTGHTAV 180
+ P+ +G + S S+D T+ +W + I + +
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203
Query: 181 VEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
+ +LLS S D TI +WD++ T GH V H
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMT------LVGHDNWVRGVLFH 256
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 51.5 bits (121), Expect = 5e-08
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 131 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190
G + + + S D I ++ + K + H V L W
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK------ALNAHKDGV---NNLLWE 267
Query: 191 PSLNGYLLSASDDHTICLWDI 211
L+S+ D I W++
Sbjct: 268 T--PSTLVSSGADACIKRWNV 286
Score = 33.4 bits (74), Expect = 0.030
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 22/103 (21%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
L+ NP L+S S D I W + ++ H+ ++ +S +
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSS------------SMHQDHSNLI-----VSLDN 54
Query: 192 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 234
S S S D T+ + I ++ A G TAV+
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97
Score = 26.1 bits (55), Expect = 7.9
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
+ S D I ++ + K + H V +
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIK------ALNAHKDGVNNLLWE 267
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 51.4 bits (121), Expect = 6e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 136 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--FTGHTAVVEVRYGLSWNPSL 193
N ++S + D I +WD+ A + H+ V + L ++
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV---FRLQFDEF- 278
Query: 194 NGYLLSASDDHTICLWD 210
++S+S D TI +WD
Sbjct: 279 --QIVSSSHDDTILIWD 293
Score = 37.9 bits (86), Expect = 0.001
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 12/220 (5%)
Query: 126 DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185
+T KG Y L ++ ++S D+TI +WD N + K I TGHT V
Sbjct: 13 ETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQ 62
Query: 186 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILG 245
+ +N + G +
Sbjct: 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122
Query: 246 THTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNR 305
+D ++ + FD + GD V E G
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCEFVRTLNGHKRG 180
Query: 306 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP 345
+ ++ + + + + ++D G
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 220
Score = 33.3 bits (74), Expect = 0.034
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWD 157
+ L ++ ++S+S D TI +WD
Sbjct: 271 FRLQFDEF---QIVSSSHDDTILIWD 293
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 51.3 bits (121), Expect = 8e-08
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 17/137 (12%)
Query: 78 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGGNVQLPNEDAQFDASNYDTDKGGYGLSWN 137
+ + ++ S D N + + + ++
Sbjct: 263 TRDGQSVVSGS-----LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317
Query: 138 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV---EVRYGLSWNPSLN 194
+ + Y+LS S D + WD + + GH V V G S P N
Sbjct: 318 QN-DEYILSGSKDRGVLFWDKK-SGNPLLM------LQGHRNSVISVAVANGSSLGPEYN 369
Query: 195 GYLLSASDDHTICLWDI 211
+ S D +W
Sbjct: 370 -VFATGSGDCKARIWKY 385
Score = 30.5 bits (67), Expect = 0.35
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 189 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHR 241
+P Y+ + S D + +WD R+ TGH V R
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 50.6 bits (119), Expect = 1e-07
Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
L + + +S D+ + W A + ++ V +
Sbjct: 269 LSLKFAYC-GKWFVSTGKDNLLNAWRTPY--------GASIFQSKESSSV---LSCDISV 316
Query: 192 SLNGYLLSASDDHTICLWDI 211
+ Y+++ S D ++++
Sbjct: 317 D-DKYIVTGSGDKKATVYEV 335
Score = 30.2 bits (66), Expect = 0.35
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDIN 212
L + + +S D+ + W
Sbjct: 269 LSLKFAYC-GKWFVSTGKDNLLNAWRTP 295
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 48.7 bits (114), Expect = 4e-07
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202
+ SAS D TI +W++ AT K + I T + + + G+ W L+S S
Sbjct: 252 KIASASADKTIKIWNV-ATLKVEKTIP------VGTRIEDQQLGIIWTK---QALVSISA 301
Query: 203 DHTICLWDI 211
+ I +
Sbjct: 302 NGFINFVNP 310
Score = 36.8 bits (83), Expect = 0.003
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 131 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWN 190
L P G + + ++ + + + + +T H+ +
Sbjct: 20 AVVLGNTP--AGDKIQYCNGTSVYTVPVG-SLTDTEI------YTEHSHQT---TVAKTS 67
Query: 191 PSLNGYLLSASDDHTICLWDIN 212
PS Y S + +WD
Sbjct: 68 PS-GYYCASGDVHGNVRIWDTT 88
Score = 29.1 bits (63), Expect = 0.75
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 196 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTH 247
+ SAS D TI +W++ AT K + I T + ++ L+ +
Sbjct: 252 KIASASADKTIKIWNV-ATLKVEKTIPVGTRIEDQQLGI-IWTKQALVSISA 301
Score = 28.3 bits (61), Expect = 1.4
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDI 158
G+ W L+S S + I +
Sbjct: 287 LGIIWTK---QALVSISANGFINFVNP 310
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 46.1 bits (107), Expect = 3e-06
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 136 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG 195
N L + S D+++ +W++N P ++ +I + V + W
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMN-KPSDHPII---IKGAHAMSSV---NSVIWLN--ET 281
Query: 196 YLLSASDDHTICLWDI 211
++SA D I W++
Sbjct: 282 TIVSAGQDSNIKFWNV 297
Score = 36.5 bits (82), Expect = 0.004
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
LS + L SA + I WDI+ T NR H ++ G+
Sbjct: 16 TALSSSAD-GKTLFSADAEGHINSWDIS-TGISNR-----VFPDVHATMI---TGIKTTS 65
Query: 192 SLNGYLLSASDDHTICLWDINATPKEN 218
G L + S D + + + ++
Sbjct: 66 --KGDLFTVSWDDHLKVVPAGGSGVDS 90
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 46.0 bits (107), Expect = 4e-06
Identities = 3/74 (4%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 139 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198
++ +L + ++ ++++ + +++ + + +++ +
Sbjct: 291 YVSDNILVSGSENQFNIYNL----RSGKLV--HANILKDADQI---WSVNFKG--KTLVA 339
Query: 199 SASDDHTICLWDIN 212
+ D L ++
Sbjct: 340 AVEKDGQSFLEILD 353
Score = 39.1 bits (89), Expect = 6e-04
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 134 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSL 193
L + + Y+++ +DD I ++D K +GH V + L +
Sbjct: 19 LQFEDN---YVITGADDKMIRVYDSI-NKKFLLQ------LSGHDGGV---WALKYAH-- 63
Query: 194 NGYLLSASDDHTICLW 209
G L+S S D T+ +W
Sbjct: 64 GGILVSGSTDRTVRVW 79
Score = 37.6 bits (85), Expect = 0.002
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 171 KTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH 230
+T GH V L + + Y+++ +DD I ++D K +GH
Sbjct: 5 RTTLRGHMT--SVITCLQFEDN---YVITGADDKMIRVYDSI-NKKFLLQ------LSGH 52
Query: 231 TAVV 234
V
Sbjct: 53 DGGV 56
Score = 26.4 bits (56), Expect = 5.9
Identities = 2/28 (7%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDIN 159
+ +++ + + D L ++
Sbjct: 328 WSVNFKG--KTLVAAVEKDGQSFLEILD 353
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 43.7 bits (101), Expect = 2e-05
Identities = 9/81 (11%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 132 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNP 191
+ PS LL S D ++ ++ + K ++ + + ++
Sbjct: 15 SDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYKHPL---LCCNFID 66
Query: 192 SLNGYLLSASDDHTICLWDIN 212
+ + + + I D+
Sbjct: 67 NTDLQIYVGTVQGEILKVDLI 87
Score = 38.3 bits (87), Expect = 0.001
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 172 TIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231
I + + PS LL S D ++ ++ + K ++ +
Sbjct: 5 QIEQAPKDYI---SDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYK 56
Query: 232 AVVEDYSIH 240
+ +
Sbjct: 57 HPLLCCNFI 65
Score = 35.2 bits (79), Expect = 0.010
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 133 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192
+ ++P + +L +A D I W++ K K + V + S
Sbjct: 256 SIEFSPR-HKFLYTAGSDGIISCWNLQTRKK------IKNFAKFNEDSV-----VKIACS 303
Query: 193 LNGYLLSASDDHTICLWDINATPKE 217
+ L A+ D T E
Sbjct: 304 -DNILCLATSDDTFKTNAAIDQTIE 327
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 38.2 bits (88), Expect = 0.001
Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 31/192 (16%)
Query: 141 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG-YLLS 199
N + ++ D I L D + + AV R S +G YL
Sbjct: 32 NLFSVTLRDAGQIALID----GSTYEIKT---VLDTGYAVHISRL------SASGRYLFV 78
Query: 200 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIAS 259
D + + D+ I G R I + ++ IA
Sbjct: 79 IGRDGKVNMIDLWM----KEPTTVAEIKIGSE--------ARSIETSKMEGWEDKYAIAG 126
Query: 260 VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATK 319
P + D + K + + + + E V P I
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ-----EYHPEPRVAAILASHYRPEFIVNV 181
Query: 320 TPSSDVLVFDYT 331
+ +L+ DYT
Sbjct: 182 KETGKILLVDYT 193
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 136 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG 195
+++++SDD T+ LWD+ T + R + G VV + + + +
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-SGGSGGVV---WRIRASNT-KL 318
Query: 196 YLLSASDDHT----ICLWDINA 213
S + T + + D +
Sbjct: 319 VCAVGSRNGTEETKLLVLDFDV 340
Score = 37.9 bits (86), Expect = 0.001
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 170 AKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG 229
+ + GH V L + + ++S SDD+T+ +W T K R G
Sbjct: 8 SPKVLKGHDD--HVITCLQFCGN---RIVSGSDDNTLKVWSAV-TGKCLRT------LVG 55
Query: 230 HTAVVEDYSIH 240
HT V +
Sbjct: 56 HTGGVWSSQMR 66
Score = 34.4 bits (77), Expect = 0.016
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202
+++S S D +I +WD+ + TGH ++ G+ + L+S +
Sbjct: 189 HVVSGSLDTSIRVWDV-------ETGNCIHTLTGHQSLT---SGMELKDN---ILVSGNA 235
Query: 203 DHTICLWDIN 212
D T+ +WDI
Sbjct: 236 DSTVKIWDIK 245
Score = 32.9 bits (73), Expect = 0.058
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGY 196
++S SDD+T+ +W T K R GHT V + ++
Sbjct: 29 RIVSGSDDNTLKVWSAV-TGKCLRT------LVGHTGGV---WSSQMRDNIIIS 72
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.8 bits (86), Expect = 0.001
Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 133 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPS 192
G + + Y++ + + + + D + V + + P
Sbjct: 1 GPALKAG-HEYMIVTNYPNNLHVVD----VASDTVYKSCVMPDKFGP-----GTAMMAPD 50
Query: 193 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIH 240
+ + I D+ T K + ++ + ++I
Sbjct: 51 NRTAYVLNNHYGDIYGIDL-DTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Score = 30.1 bits (66), Expect = 0.46
Identities = 10/106 (9%), Positives = 22/106 (20%), Gaps = 5/106 (4%)
Query: 126 DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185
G P + + I D+ T K + ++ + Y
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-DTCKNTFHANLSSVPGEVGRSM---Y 92
Query: 186 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT 231
+ +P + + + P V
Sbjct: 93 SFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 36.8 bits (83), Expect = 0.003
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 136 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNG 195
+ Y A + + +D+ T K T + L + +
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDV-KTRKV----------TEVKNNL---TDLRLSA--DR 326
Query: 196 -YLLSASDDHTICLWDINATPKENRVID 222
++ DD I + + P++ R ++
Sbjct: 327 KTVMVRKDDGKIYTFPLE-KPEDERTVE 353
Score = 26.4 bits (56), Expect = 5.8
Identities = 14/189 (7%), Positives = 32/189 (16%), Gaps = 6/189 (3%)
Query: 46 AQWLPDVTSVQLPNEDAQFDASNYDTDKGTHTSDEQNHLLIASVQLPNEDAQFDASNYDT 105
+ D + YD G E+N + + +
Sbjct: 48 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFA------MGVDRNGKFAV 101
Query: 106 DKGGNVQLPNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN 165
++ D + ++ + A +
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161
Query: 166 RVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT 225
V D + + + L S D V+
Sbjct: 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 226 IFTGHTAVV 234
+
Sbjct: 222 VIPLIPGSP 230
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 36.1 bits (82), Expect = 0.006
Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 29/196 (14%)
Query: 139 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLL 198
N + ++ D I L D ++ +++ K I TG+ + + S YLL
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDS----KKIV--KVIDTGYAV-----HISRMSAS-GRYLL 77
Query: 199 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSIHRLILGTHTSDEQNHLLIA 258
D I + D+ A A ++ R + + ++ IA
Sbjct: 78 VIGRDARIDMIDLWAKEPTK------------VAEIKIGIEARSVESSKFKGYEDRYTIA 125
Query: 259 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT 318
P + A D + + +V + + E V ++P I
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ-----TYHPEPRVAAIIASHEHPEFIVN 180
Query: 319 KTPSSDVLVFDYTKHP 334
+ VL+ +Y
Sbjct: 181 VKETGKVLLVNYKDID 196
Score = 30.3 bits (67), Expect = 0.42
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 146 SASDDHTICLWDINATPKENRVI---DAKTIFTGHTAVVEVRYGLSWNPSLNGYLLS--- 199
A ++ ++D+ + +V+ + + G VV+ Y N + S
Sbjct: 327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY----NKRGDEVWFSVWN 382
Query: 200 -ASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVV 234
+D + + D T K V+ + T G V
Sbjct: 383 GKNDSSALVVVDD-KTLKLKAVVKDPRLITPTGKFNVY 419
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 33.2 bits (74), Expect = 0.037
Identities = 9/97 (9%), Positives = 25/97 (25%), Gaps = 12/97 (12%)
Query: 143 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASD 202
Y+L+ + + + D ++VI + P + +
Sbjct: 3 YILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPM-------VAPGGRIAYATVNK 54
Query: 203 DHTICLWDINATPKENRVIDAKTIFTGHTAVVEDYSI 239
++ D+ + + T V +
Sbjct: 55 SESLVKIDL----VTGETLGRIDLSTPEERVKSLFGA 87
Score = 25.9 bits (55), Expect = 8.7
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 6/99 (6%)
Query: 126 DTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRY 185
D P + + ++ D+ + + T V+ +
Sbjct: 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL----VTGETLGRIDLSTPEE-RVKSLF 85
Query: 186 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAK 224
G + +P L + L P + DA+
Sbjct: 86 GAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 32.9 bits (73), Expect = 0.045
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 146 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205
+ S+ I + D+ + N+V TI G G +P ++ + +
Sbjct: 7 ANSESDNISVIDVTS----NKVT--ATIPVGSNP-----MGAVISPDGTKVYVANAHSND 55
Query: 206 ICLWDIN 212
+ + D
Sbjct: 56 VSIIDTA 62
Score = 26.8 bits (57), Expect = 4.6
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 125 YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI 168
G++ P ++ S +T+ + D AT +
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT-ATNTITATM 282
Score = 26.0 bits (55), Expect = 8.0
Identities = 3/35 (8%), Positives = 10/35 (28%)
Query: 125 YDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDIN 159
G +P ++ + + + + D
Sbjct: 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62
Score = 25.6 bits (54), Expect = 10.0
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 185 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI 221
G++ P ++ S +T+ + D AT +
Sbjct: 247 AGIAVTPDGKKVYVALSFCNTVSVIDT-ATNTITATM 282
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 31.7 bits (70), Expect = 0.12
Identities = 5/67 (7%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 146 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHT 205
++ + I +W++N + + + +P + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLT---QVVDVPGQV-----QPMVVSPDKRYLYVGVRPEFR 60
Query: 206 ICLWDIN 212
+ + I
Sbjct: 61 VLAYRIA 67
Score = 30.6 bits (67), Expect = 0.28
Identities = 10/111 (9%), Positives = 29/111 (26%), Gaps = 9/111 (8%)
Query: 123 SNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 182
N+ + + P I ++ ++ G
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE-------GFQPTET 276
Query: 183 VRYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV 233
G + + S + + H I +++I ++ + + G +
Sbjct: 277 QPRGFNVDHSGKYLIAAGQKSHHISVYEIV--GEQGLLHEKGRYAVGQGPM 325
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 30.9 bits (68), Expect = 0.25
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 128 DKGGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGL 187
+ + + + + D K + GH +
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLD----AKTGERL--AKFEMGHEI-----DSI 305
Query: 188 SWNPSLNGYLL-SASDDHTICLWDINATPKENRVID 222
+ + L ++ D T+ + D + +E R ++
Sbjct: 306 NVSQDEKPLLYALSTGDKTLYIHDA-ESGEELRSVN 340
Score = 27.1 bits (58), Expect = 3.6
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 126 DTDKGGYGLSWNPSLNGYLL-SASDDHTICLWDINATPKENRVID 169
+ ++ + L ++ D T+ + D + +E R ++
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA-ESGEELRSVN 340
>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium
botulinum D phage [TaxId: 29342]}
Length = 145
Score = 28.8 bits (64), Expect = 0.54
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 104 DTDKGGNVQL---PNEDAQFDASNYDTDKGGYGLSWNPSLNGYLLSASDDHTICLWDINA 160
D V+L + Q YDT+K Y + + + L + ++ +
Sbjct: 25 DKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSLILTWNAPLSSVSVKTDTN 84
Query: 161 TPKENRVIDAKTIFTGHTAVVEVRYGLSWNPSLNGYLLSASDDHTICLWDINATP 215
+ + I N +L + D T+ + ++
Sbjct: 85 GDNQYWYLLQNYISRNVI---------IRNYMNPNLVLQYNIDDTLMVSTQTSSS 130
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 305 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL--RLRGHQKEGL 357
+A + P + P + K + P L LR HQ+EG+
Sbjct: 10 KALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGV 64
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.4 bits (62), Expect = 1.6
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 7/85 (8%)
Query: 130 GGYGLSWNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVEVRYGLS 188
+ P+ + + + + N +T+ V + ++
Sbjct: 116 TAACVLAYPAGDDRFTALCESGKALTVTLD-----ANGKEAKRTMSDAFIDVDKDPAFVN 170
Query: 189 WNPSLNGYLLSASDDHTICLWDINA 213
G L + + D +
Sbjct: 171 -ASRYKGDYLFTTYGGNVRSADFSG 194
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 27.0 bits (58), Expect = 4.2
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 259 SVQLP-NEDAQFDASNYDTDKGDFGGFGSVSGKIEI 293
V+ P E A F + F G+ SG IEI
Sbjct: 564 IVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEI 599
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.408
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,401,117
Number of extensions: 63400
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 89
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)