BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4580
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
          Length = 1265

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 1    MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLA 41
            + + LE RE D+K LK+  + KQ E+ E+ +RKDLAE KL+
Sbjct: 982  LAATLENREADVKQLKVAAKMKQNELSEMQIRKDLAEKKLS 1022


>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
          Length = 1278

 Score = 35.8 bits (81), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 4   KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48
           KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D
Sbjct: 944 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD 988


>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
          Length = 1280

 Score = 35.8 bits (81), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 4   KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48
           KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D
Sbjct: 943 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD 987


>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
          Length = 1281

 Score = 35.8 bits (81), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 4   KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48
           KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D
Sbjct: 944 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDAD 988


>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
          Length = 1224

 Score = 35.4 bits (80), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 4   KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48
           KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A +D D
Sbjct: 937 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSASKDAD 981


>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
          Length = 1232

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 4   KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48
           KLE+RE  IK+LK  L+ K EE+ E +VR  L E KL +A ++ D
Sbjct: 903 KLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSASKEAD 947


>sp|Q5XI63|KIFC1_RAT Kinesin-like protein KIFC1 OS=Rattus norvegicus GN=Kifc1 PE=2 SV=1
          Length = 693

 Score = 32.7 bits (73), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 38/70 (54%)

Query: 2   KSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRI 61
           + K +  +R+ + L+  LR  QE+   +   ++  E +LA+  R  +  +QKL+ +  R+
Sbjct: 174 REKTQTLDRENQGLREQLREVQEQATTLGTERNTLEEELASVRRRAEQSQQKLETLGARV 233

Query: 62  NQLEEVVDLK 71
            +LEE +  K
Sbjct: 234 LELEECLGTK 243


>sp|A6VMK7|NDK_ACTSZ Nucleoside diphosphate kinase OS=Actinobacillus succinogenes
           (strain ATCC 55618 / 130Z) GN=ndk PE=3 SV=1
          Length = 141

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 7   ERERDIKDLKILLRSK-QEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
           E++  +KD + L+ +   ++  E ++RKD AES+  N++   D +E  ++
Sbjct: 78  EKDNAVKDYRTLIGATDPQQAAEGTIRKDFAESRRRNSVHGSDSEESAVR 127


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.129    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,256,098
Number of Sequences: 539616
Number of extensions: 681563
Number of successful extensions: 3824
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 3594
Number of HSP's gapped (non-prelim): 311
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)