Query psy4580
Match_columns 72
No_of_seqs 28 out of 30
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:37:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a7p_A Autophagy protein 16; c 89.9 1.2 4E-05 31.0 6.6 54 4-57 83-136 (152)
2 3oja_B Anopheles plasmodium-re 82.4 12 0.00039 27.9 8.9 65 5-69 518-582 (597)
3 3nmd_A CGMP dependent protein 71.7 6.9 0.00024 24.1 4.3 43 12-58 21-63 (72)
4 1zxa_A CGMP-dependent protein 71.2 7.4 0.00025 23.6 4.3 29 3-31 18-46 (67)
5 2pnv_A Small conductance calci 70.2 6.5 0.00022 21.9 3.6 20 25-44 10-29 (43)
6 3na7_A HP0958; flagellar bioge 69.9 25 0.00084 24.4 8.1 41 3-43 46-86 (256)
7 3a7o_A Autophagy protein 16; c 69.8 8.3 0.00028 24.1 4.4 33 11-43 19-51 (75)
8 1cxz_B Protein (PKN); protein- 62.0 26 0.00091 21.9 6.6 57 3-62 21-83 (86)
9 2b9c_A Striated-muscle alpha t 53.0 47 0.0016 22.0 8.7 60 4-63 53-112 (147)
10 3tnu_A Keratin, type I cytoske 52.0 43 0.0015 21.3 6.6 50 8-57 36-85 (131)
11 3tnu_B Keratin, type II cytosk 50.0 46 0.0016 21.0 7.8 50 8-57 34-83 (129)
12 3u1c_A Tropomyosin alpha-1 cha 49.8 43 0.0015 20.7 9.3 54 4-57 24-77 (101)
13 3na7_A HP0958; flagellar bioge 44.2 76 0.0026 21.9 8.1 58 4-61 105-162 (256)
14 3a7o_A Autophagy protein 16; c 40.9 64 0.0022 20.0 5.2 44 2-45 24-74 (75)
15 3nmd_A CGMP dependent protein 40.3 51 0.0017 20.1 4.3 30 4-33 34-63 (72)
16 1l8d_A DNA double-strand break 39.6 60 0.0021 19.4 4.8 45 1-45 1-45 (112)
17 2q6q_A Spindle POLE BODY compo 37.2 73 0.0025 19.7 7.2 28 13-40 6-33 (74)
18 3vkg_A Dynein heavy chain, cyt 35.5 1.9E+02 0.0064 28.0 8.8 44 4-47 2015-2058(3245)
19 2xu6_A MDV1 coiled coil; prote 32.7 86 0.0029 19.2 5.1 26 28-57 11-36 (72)
20 3u1c_A Tropomyosin alpha-1 cha 31.4 93 0.0032 19.1 8.7 40 4-43 38-77 (101)
21 3vkg_A Dynein heavy chain, cyt 31.2 2.4E+02 0.0083 27.3 8.8 53 11-63 2015-2067(3245)
22 3u59_A Tropomyosin beta chain; 31.2 91 0.0031 18.9 9.3 43 6-48 26-68 (101)
23 1i84_S Smooth muscle myosin he 30.3 2E+02 0.0069 24.1 7.6 32 6-37 860-891 (1184)
24 2l2l_A Transcriptional repress 29.7 39 0.0014 19.0 2.3 17 5-21 3-19 (43)
25 1ic2_A Tropomyosin alpha chain 28.7 92 0.0031 18.2 7.4 46 4-49 21-66 (81)
26 4ghu_A TNF receptor-associated 27.1 1.1E+02 0.0036 20.4 4.5 30 36-65 5-34 (198)
27 2zdi_C Prefoldin subunit alpha 25.5 1.3E+02 0.0046 19.0 5.0 32 30-61 104-135 (151)
28 1ykh_A RNA polymerase II media 21.8 1.5E+02 0.0051 19.1 4.3 34 7-40 73-106 (108)
29 3fmy_A HTH-type transcriptiona 20.8 55 0.0019 17.8 1.8 20 10-29 14-33 (73)
No 1
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.92 E-value=1.2 Score=30.97 Aligned_cols=54 Identities=6% Similarity=0.004 Sum_probs=42.6
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV 57 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~ 57 (72)
++-+++.+|++-.+.+-.=++|+...++...++|.|+..+..++..-+++|=.+
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666679999999999999999999999999988887554
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.41 E-value=12 Score=27.88 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=42.4
Q ss_pred hhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy4580 5 LEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVVD 69 (72)
Q Consensus 5 LE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q~~~~~~ 69 (72)
...++.+...++.+...+.+++-...-...-+|++++....-..+--+..+...+.+.||++..+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666666666666666666667777777666666666666666777788877653
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.67 E-value=6.9 Score=24.08 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4580 12 IKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVT 58 (72)
Q Consensus 12 IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~ 58 (72)
|.+|+.+|+.|-+||..-.-++.-+|+.|.. .+..++.++...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e----kd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ----KDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 8999999999999999999999988888863 344444454443
No 4
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=71.17 E-value=7.4 Score=23.56 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=23.9
Q ss_pred hhhhhhHHhHHHHHHHHhhhhhhhhHHHH
Q psy4580 3 SKLEERERDIKDLKILLRSKQEEIGEISV 31 (72)
Q Consensus 3 ~KLE~RE~~IkELKkaLK~K~eElsEm~V 31 (72)
..|..|+..|++|...|..|.+++.+.+-
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~ 46 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKR 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999888888763
No 5
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=70.21 E-value=6.5 Score=21.94 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q psy4580 25 EIGEISVRKDLAESKLANAI 44 (72)
Q Consensus 25 ElsEm~VR~~L~EKKL~~a~ 44 (72)
=+|+++-|.+-+|+|+.+..
T Consensus 10 lvsel~~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 47899999999999998875
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.93 E-value=25 Score=24.41 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q psy4580 3 SKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANA 43 (72)
Q Consensus 3 ~KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a 43 (72)
..++...+.|.+++..++....++.+..-|+.=.+++|.++
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34666777888888888888888888888888888777664
No 7
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=69.77 E-value=8.3 Score=24.12 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=19.4
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q psy4580 11 DIKDLKILLRSKQEEIGEISVRKDLAESKLANA 43 (72)
Q Consensus 11 ~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a 43 (72)
.|+-||..|+.|..|++...=+..+--|..+.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 566666677777666666655555544444433
No 8
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=62.03 E-value=26 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=30.8
Q ss_pred hhhhhhHHhHH-HHHHHHhhhhhhhhHHHHHHHHHH-HH----HHhhhhhHHHHHHHHHHHHHHHH
Q psy4580 3 SKLEERERDIK-DLKILLRSKQEEIGEISVRKDLAE-SK----LANAIRDKDYQEQKLKCVTNRIN 62 (72)
Q Consensus 3 ~KLE~RE~~Ik-ELKkaLK~K~eElsEm~VR~~L~E-KK----L~~a~ke~e~~~~kl~~~~~~~~ 62 (72)
.+++++-+.|+ +++|.||+|. +-=++|+-... |+ ++.--+....+.+.++...++||
T Consensus 21 ~~le~~r~~ir~eI~KElKiKe---GaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 21 QQLELERERLRREIRKELKLKE---GAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777777775 7999999992 11234444443 22 23333344445555555555444
No 9
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.04 E-value=47 Score=22.04 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=41.3
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q 63 (72)
+++.-+..+++.+.....----+.|+.-++.++|..|+.+---++..-.++....+.|..
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888877777777777778888888888777666666655555555544443
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.04 E-value=43 Score=21.27 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=31.7
Q ss_pred hHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580 8 RERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV 57 (72)
Q Consensus 8 RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~ 57 (72)
-.++|.+|+..+-.-+-|+..+.=.+.-+|..+..+-.-++.....++..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~ 85 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM 85 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888887777777777777677777877777766666655554444
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.00 E-value=46 Score=21.02 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=37.9
Q ss_pred hHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580 8 RERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV 57 (72)
Q Consensus 8 RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~ 57 (72)
-.++|.+++..+-.-+-|+..+.=.+.-+|..+..+-.-++.....++..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~ 83 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNK 83 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999998888888888887778888888887777666665555544
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.76 E-value=43 Score=20.65 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=37.7
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCV 57 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~ 57 (72)
+.+.-+..++++......+.+|+..++-|+..+|--|+.+.......-+++..-
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888888888877776655555444444433
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.18 E-value=76 Score=21.88 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=38.8
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRI 61 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~ 61 (72)
.+...|..|.++-..+-.+...+.+..-+..-++..|.......+..+..+......+
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777777777777777777777666665554433
No 14
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=40.87 E-value=64 Score=20.04 Aligned_cols=44 Identities=20% Similarity=0.426 Sum_probs=32.0
Q ss_pred hhhhhhhHHhHHHHHHHHhhhh-------hhhhHHHHHHHHHHHHHHhhhh
Q psy4580 2 KSKLEERERDIKDLKILLRSKQ-------EEIGEISVRKDLAESKLANAIR 45 (72)
Q Consensus 2 ~~KLE~RE~~IkELKkaLK~K~-------eElsEm~VR~~L~EKKL~~a~k 45 (72)
+.-|..+|.+|+.|+--++.|. +|+=-.+|--.++..||.....
T Consensus 24 r~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 24 QKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 4568899999999998877773 5666778888888888876543
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.34 E-value=51 Score=20.13 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRK 33 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~ 33 (72)
.|-.++..|++|.+.|..|-++|.+.+.-.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688889999999999988888776443
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.65 E-value=60 Score=19.40 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred ChhhhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhh
Q psy4580 1 MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIR 45 (72)
Q Consensus 1 ~~~KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~k 45 (72)
|...|.+-+..+.+++..|..-....++..-++..+++.+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777788777776677777777777777777776654
No 17
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.25 E-value=73 Score=19.70 Aligned_cols=28 Identities=43% Similarity=0.474 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy4580 13 KDLKILLRSKQEEIGEISVRKDLAESKL 40 (72)
Q Consensus 13 kELKkaLK~K~eElsEm~VR~~L~EKKL 40 (72)
+||-..|..|++||-..+|=.|-+--||
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999998777665444
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.49 E-value=1.9e+02 Score=28.05 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDK 47 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~ 47 (72)
+|..-+......+..|..+++++.+..=++.-+..+++.+..+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555544444444444444444333
No 19
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.74 E-value=86 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4580 28 EISVRKDLAESKLANAIRDKDYQEQKLKCV 57 (72)
Q Consensus 28 Em~VR~~L~EKKL~~a~ke~e~~~~kl~~~ 57 (72)
=|+||++++- +-.++-|.+++.++..
T Consensus 11 ml~IrKnma~----sEI~EID~Ki~nL~~m 36 (72)
T 2xu6_A 11 FLNIQKNSTM----SEIRDIEVEVENLRQK 36 (72)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhH----HHHHHHHHHHHHHHHH
Confidence 3556666552 2234445555555443
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.35 E-value=93 Score=19.10 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=24.6
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANA 43 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a 43 (72)
..+..|.+|..|.+-+..=.+++-...-+..-+-.+|+..
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999998888766666555444444444444443
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.22 E-value=2.4e+02 Score=27.31 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy4580 11 DIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQ 63 (72)
Q Consensus 11 ~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q 63 (72)
.+.++...|...+..+.+.+-.+.-++.+|+....+.+......+......+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666655556666666666666666555544444443333
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.21 E-value=91 Score=18.94 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=24.7
Q ss_pred hhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHH
Q psy4580 6 EERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKD 48 (72)
Q Consensus 6 E~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e 48 (72)
+.-+..++++........+++...+.++..+|--++.+.-...
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666655554443333
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=30.32 E-value=2e+02 Score=24.15 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=14.2
Q ss_pred hhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4580 6 EERERDIKDLKILLRSKQEEIGEISVRKDLAE 37 (72)
Q Consensus 6 E~RE~~IkELKkaLK~K~eElsEm~VR~~L~E 37 (72)
+..+..+.+++..|..-...+.++.-+..-++
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le 891 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLC 891 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444444444444333333
No 24
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=29.67 E-value=39 Score=19.03 Aligned_cols=17 Identities=65% Similarity=0.614 Sum_probs=14.5
Q ss_pred hhhhHHhHHHHHHHHhh
Q psy4580 5 LEERERDIKDLKILLRS 21 (72)
Q Consensus 5 LE~RE~~IkELKkaLK~ 21 (72)
-++|+..|+.||-.|+.
T Consensus 3 ~~ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 3 PEERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999999998875
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.70 E-value=92 Score=18.22 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=29.8
Q ss_pred hhhhhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHH
Q psy4580 4 KLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDY 49 (72)
Q Consensus 4 KLE~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL~~a~ke~e~ 49 (72)
+++.-+...++.........+++..++-|+.++|--|+.+.-....
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777677777777777777777666655444433
No 26
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.07 E-value=1.1e+02 Score=20.41 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4580 36 AESKLANAIRDKDYQEQKLKCVTNRINQLE 65 (72)
Q Consensus 36 ~EKKL~~a~ke~e~~~~kl~~~~~~~~q~~ 65 (72)
+|.+++...+.-..+-+++...++++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444443333333333444444444333
No 27
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.49 E-value=1.3e+02 Score=19.03 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy4580 30 SVRKDLAESKLANAIRDKDYQEQKLKCVTNRI 61 (72)
Q Consensus 30 ~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~ 61 (72)
.-|++.+++.+..........-..+......+
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333333
No 28
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=21.85 E-value=1.5e+02 Score=19.06 Aligned_cols=34 Identities=35% Similarity=0.251 Sum_probs=25.0
Q ss_pred hhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy4580 7 ERERDIKDLKILLRSKQEEIGEISVRKDLAESKL 40 (72)
Q Consensus 7 ~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL 40 (72)
.||+.|.-|+..+..|.+++.++.-..+-+...|
T Consensus 73 ARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L 106 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888887766655555444
No 29
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.79 E-value=55 Score=17.84 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=16.8
Q ss_pred HhHHHHHHHHhhhhhhhhHH
Q psy4580 10 RDIKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 10 ~~IkELKkaLK~K~eElsEm 29 (72)
..|+++|+.+..-|.++++.
T Consensus 14 ~~lr~~R~~~gltq~elA~~ 33 (73)
T 3fmy_A 14 EFIVKVRKKLSLTQKEASEI 33 (73)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 45899999999999988764
Done!