Query psy4580
Match_columns 72
No_of_seqs 28 out of 30
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:37:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4580.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4580hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cxzb_ a.2.6.1 (B:) Protein k 58.1 15 0.0011 21.7 6.6 59 3-62 21-83 (86)
2 d2ppxa1 a.35.1.3 (A:30-91) Unc 25.7 17 0.0012 18.8 1.7 19 11-29 3-21 (62)
3 d1ykha1 a.252.1.2 (A:111-205) 23.7 63 0.0046 18.9 4.3 34 7-40 60-93 (95)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.4 63 0.0046 18.3 5.4 37 29-65 93-129 (133)
5 d1vcsa1 a.47.2.1 (A:8-96) Vesi 19.0 72 0.0052 17.9 3.7 18 9-26 4-21 (89)
6 d1gqea_ e.38.1.1 (A:) Polypept 18.5 1.4E+02 0.01 20.4 7.4 57 10-68 6-64 (362)
7 d2r1jl1 a.35.1.2 (L:3-68) P22 17.3 40 0.0029 16.9 2.1 20 10-29 6-25 (66)
8 d1y7ya1 a.35.1.3 (A:5-73) Rest 15.9 34 0.0025 17.5 1.5 21 9-29 11-31 (69)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 12.8 46 0.0034 16.8 1.5 20 10-29 4-23 (68)
10 d2croa_ a.35.1.2 (A:) cro 434 12.0 51 0.0037 16.5 1.5 18 12-29 8-25 (65)
No 1
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.10 E-value=15 Score=21.71 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred hhhhhhHHhH-HHHHHHHhhh--hhhhhHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy4580 3 SKLEERERDI-KDLKILLRSK--QEEIGEISV-RKDLAESKLANAIRDKDYQEQKLKCVTNRIN 62 (72)
Q Consensus 3 ~KLE~RE~~I-kELKkaLK~K--~eElsEm~V-R~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~ 62 (72)
.+||++-+.| .+++|.||+| .|-+-++-. |+...+ ..+..=+.+..+.+.++...+.||
T Consensus 21 ~~le~~r~~lr~eI~KELKIKeGAENL~~attd~kk~~~-~V~~eL~~sN~kL~~L~~eL~eLn 83 (86)
T d1cxzb_ 21 QQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLG-PVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677776666 4799999999 455544422 111111 133344455556666666655554
No 2
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.70 E-value=17 Score=18.84 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhhhhhhhHH
Q psy4580 11 DIKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 11 ~IkELKkaLK~K~eElsEm 29 (72)
+|+.+|+.+..-|.++++.
T Consensus 3 ~ik~~R~~~gltQ~elA~~ 21 (62)
T d2ppxa1 3 RIKIIRRALKLTQEEFSAR 21 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 6899999999999998874
No 3
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.71 E-value=63 Score=18.85 Aligned_cols=34 Identities=35% Similarity=0.251 Sum_probs=23.8
Q ss_pred hhHHhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy4580 7 ERERDIKDLKILLRSKQEEIGEISVRKDLAESKL 40 (72)
Q Consensus 7 ~RE~~IkELKkaLK~K~eElsEm~VR~~L~EKKL 40 (72)
.||+.|--|...+..|.+++.++.--.+-+..+|
T Consensus 60 AResLi~lme~Ql~~kr~~~~~i~~~~~~~~~~L 93 (95)
T d1ykha1 60 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888888877777665555554444
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.44 E-value=63 Score=18.30 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4580 29 ISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLE 65 (72)
Q Consensus 29 m~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q~~ 65 (72)
..-|++.+++.+.....+.....+.+......++|+-
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665555555555555543
No 5
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.03 E-value=72 Score=17.85 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=7.4
Q ss_pred HHhHHHHHHHHhhhhhhh
Q psy4580 9 ERDIKDLKILLRSKQEEI 26 (72)
Q Consensus 9 E~~IkELKkaLK~K~eEl 26 (72)
|.+...|--.+..|...+
T Consensus 4 E~~y~~l~a~i~~kl~~i 21 (89)
T d1vcsa1 4 EQDFAVLTAEITSKIARV 21 (89)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=18.49 E-value=1.4e+02 Score=20.44 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=30.6
Q ss_pred HhHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy4580 10 RDIKDLKILLRSKQE--EIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNRINQLEEVV 68 (72)
Q Consensus 10 ~~IkELKkaLK~K~e--ElsEm~VR~~L~EKKL~~a~ke~e~~~~kl~~~~~~~~q~~~~~ 68 (72)
..|.+|++.+..=.- ++....-|..=+|+.++.+..-+|- .+++....++..|+.+|
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~--~kAqkl~KE~s~L~~iV 64 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEP--ERAQALGKERSSLEAVV 64 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCH--HHHHHHHHHHHHHHHHH
Confidence 345555555433221 4566667777778888887764432 23333344444444444
No 7
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=17.29 E-value=40 Score=16.92 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.8
Q ss_pred HhHHHHHHHHhhhhhhhhHH
Q psy4580 10 RDIKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 10 ~~IkELKkaLK~K~eElsEm 29 (72)
.-|+++++.....+.++++.
T Consensus 6 ~rik~~R~~~g~tq~~lA~~ 25 (66)
T d2r1jl1 6 ERIRARRKKLKIRQAALGKM 25 (66)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 45889999999999998875
No 8
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=15.87 E-value=34 Score=17.49 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHhhhhhhhhHH
Q psy4580 9 ERDIKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 9 E~~IkELKkaLK~K~eElsEm 29 (72)
-.-|+++|+...+.+.++++.
T Consensus 11 g~~ik~~R~~~gltq~~lA~~ 31 (69)
T d1y7ya1 11 GQRLRELRTAKGLSQETLAFL 31 (69)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHhH
Confidence 346888888888888887764
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=12.76 E-value=46 Score=16.78 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.0
Q ss_pred HhHHHHHHHHhhhhhhhhHH
Q psy4580 10 RDIKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 10 ~~IkELKkaLK~K~eElsEm 29 (72)
..|++++......|+++++.
T Consensus 4 ~~ik~~R~~~gltq~~la~~ 23 (68)
T d1b0na2 4 QRIKQYRKEKGYSLSELAEK 23 (68)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35888888888888888874
No 10
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=12.05 E-value=51 Score=16.53 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhHH
Q psy4580 12 IKDLKILLRSKQEEIGEI 29 (72)
Q Consensus 12 IkELKkaLK~K~eElsEm 29 (72)
|+++++.....|.++++.
T Consensus 8 lr~~R~~~gltq~~lA~~ 25 (65)
T d2croa_ 8 LKKRRIALKMTQTELATK 25 (65)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Done!