RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4580
         (72 letters)



>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
           contractIle protein-transport protein complex; 24.00A
           {Gallus gallus}
          Length = 1080

 Score = 29.3 bits (66), Expect = 0.066
 Identities = 14/66 (21%), Positives = 32/66 (48%)

Query: 1   MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNR 60
           +++K+ + +R I +     +S  E++  + +       KL + +      E++ K  TNR
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 61  INQLEE 66
           +  L+E
Sbjct: 986 VLSLQE 991


>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics; 1.90A {Pseudomonas aeruginosa PAO1}
          Length = 282

 Score = 27.8 bits (62), Expect = 0.21
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 20  RSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNR-INQLEEVVD 69
            S +    ++ VR      +   ++  K Y+EQ++     R +N L E + 
Sbjct: 78  LSTKPGPQKLEVRAATGNHEERFSVGSKHYREQRITLKNKRQVNPLPEDLK 128


>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
            2, heavy meromyosin, essential light chain, motor
            protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
            PDB: 3j04_A 3dtp_B 3dtp_A
          Length = 1184

 Score = 27.1 bits (60), Expect = 0.45
 Identities = 10/69 (14%), Positives = 35/69 (50%)

Query: 1    MKSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKCVTNR 60
            ++ +    +  IK ++  +   +++  +++  + L E ++++   +   +E+K K +T  
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 61   INQLEEVVD 69
             N+ E ++ 
Sbjct: 1034 KNKHESMIS 1042


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 5   LEERERDIKDLKIL--LRSKQEEIGEISVRKDLAESK--LANAIRDKDYQ 50
           +  ++     L++   L SKQEE+ +  V + L  +   L + I+ +  Q
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104


>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score = 24.5 bits (53), Expect = 4.5
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 2    KSKLEERERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLK 55
            +  L+     I  + +L+  K++++ E  +  ++   KL +        +  L 
Sbjct: 1895 RHYLDF----INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLA 1944


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.129    0.322 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,017,688
Number of extensions: 48187
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 32
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)