BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4582
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IV1|A Chain A, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|B Chain B, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|C Chain C, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|D Chain D, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|E Chain E, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|F Chain F, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|G Chain G, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
pdb|3IV1|H Chain H, Coiled-Coil Domain Of Tumor Susceptibility Gene 101
Length = 78
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92
SL SAV DK+R + E+ +AQ E+ LK+TE +L +G KL R+D+E AE++++I
Sbjct: 3 SLISAVSDKLRWRXKEEXDRAQAELNALKRTEEDLKKGHQKLEEXVTRLDQEVAEVDKNI 62
Query: 93 SFLKEKETELDEIL 106
LK+K+ EL L
Sbjct: 63 ELLKKKDEELSSAL 76
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92
++K+ +E K E+K + + +I KQ ENELNQ K++ ID+ E SI
Sbjct: 714 AIKTIIESKYNSYTLEEKNELTNKYDI-KQIENELNQ---KVSIAMNNIDRFLT--ESSI 767
Query: 93 SFL 95
S+L
Sbjct: 768 SYL 770
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 57 IEILKQTENELNQGKFKLARMFERIDKE 84
+EIL+ ++N+ ++ F L +FE++DKE
Sbjct: 74 LEILRDSKNQNDEKYFNLKAVFEQLDKE 101
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 57 IEILKQTENELNQGKFKLARMFERIDKE 84
+EIL+ ++N+ ++ F L +FE++DKE
Sbjct: 74 LEILRDSKNQNDEKYFNLKAVFEQLDKE 101
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 60 LKQTENELNQGKFKLARM-------FERIDKEKAELERSISFLKE--KETELD 103
LK T+ +NQ KL R+ F +I+KE +E+E I L++ ++T++D
Sbjct: 367 LKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKID 419
>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 60 LKQTENELNQGKFKLARM-------FERIDKEKAELERSISFLKE--KETELD 103
LK T+ +NQ KL R+ F +I+KE +E+E I L++ ++T++D
Sbjct: 367 LKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKID 419
>pdb|1R4T|A Chain A, Solution Structure Of Exoenzyme S
Length = 153
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 10 LDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQT-ENELN 68
L++ +GG + Q GT ++ L ++ E +RR++ +Q Q E+ +L+Q E+E++
Sbjct: 80 LERSIGGIALQQWGTTGGAASQLVLDASPE--LRREITDQLHQVMSEVALLRQAVESEVS 137
Query: 69 Q 69
+
Sbjct: 138 R 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,895,971
Number of Sequences: 62578
Number of extensions: 91388
Number of successful extensions: 315
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 44
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)