BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4582
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus
GN=Tsg101 PE=1 SV=1
Length = 391
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 6 TRWTLDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTEN 65
+++ V + PS+ GTI+++ I+ SL SAV DK+R +M E+ AQ E+ LK+TE
Sbjct: 203 SQYPSQPPVTTAGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDGAQAELNALKRTEE 262
Query: 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE-VDVDEAVTTT 124
+L +G KL M R+D+E AE++++I LK+K+ EL L + ++E D+DE + T
Sbjct: 263 DLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPT 322
Query: 125 APIYKQIVN 133
AP+YKQI+N
Sbjct: 323 APLYKQILN 331
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101
PE=1 SV=2
Length = 390
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 18 SPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM 77
PS+ GTI+++ I+ SL SAV DK+R +M E+ +AQ E+ LK+TE +L +G KL M
Sbjct: 214 GPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 273
Query: 78 FERIDKEKAELERSISFLKEKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQIVN 133
R+D+E AE++++I LK+K+ EL L + ++E D+DE + TAP+YKQI+N
Sbjct: 274 VTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILN 330
>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101
PE=1 SV=2
Length = 391
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 18 SPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM 77
PS+ GTI+++ I+ SL SAV DK+R +M E+ AQ E+ LK+TE +L +G KL M
Sbjct: 215 GPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEM 274
Query: 78 FERIDKEKAELERSISFLKEKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQIVN 133
R+D+E AE++++I LK+K+ EL L + ++E D+DE + TAP+YKQI+N
Sbjct: 275 VTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILN 331
>sp|A5FX43|SYS_ACICJ Serine--tRNA ligase OS=Acidiphilium cryptum (strain JF-5) GN=serS
PE=3 SV=1
Length = 433
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE-------LERSISFLK 96
R ++E++ +AQ E++ + NEL + + R E +AE +E + ++L
Sbjct: 38 RALDEERRRAQTELQGHETRRNELARAIGQAKRAGEDTTALEAEGTALRQSIETANAWLA 97
Query: 97 EKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132
E +LDE+LAVL + DV + TA + ++ V
Sbjct: 98 ESARKLDELLAVLPNVLDADVPDGPDETANVEQKRV 133
>sp|O61366|GPRS_DROME Serine-enriched protein OS=Drosophila melanogaster GN=gprs PE=4
SV=3
Length = 1302
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 5 LTRWTLDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTE 64
L++ DQ+VGGSS + + H + +S ++ + R++ E +V +E+ E + E
Sbjct: 737 LSQTNADQQVGGSSDELPFELANVHFEKVGESYIKHERLRELQEPEVVKEEDTEKDAEAE 796
Query: 65 NELNQGKFKLARMFERI 81
E+ Q +A+ E +
Sbjct: 797 VEVEQTDAAMAQFVEEV 813
>sp|Q5FL81|RNY_LACAC Ribonuclease Y OS=Lactobacillus acidophilus (strain ATCC 700396 /
NCK56 / N2 / NCFM) GN=rny PE=3 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 48 EQKVQAQEEIEILKQ-TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104
E+ ++AQE+I +Q TE+ELN K LAR R+ + + L+ S L E+E L E
Sbjct: 80 EKILEAQEQIRDYRQKTEDELNSKKDNLARQENRLQQREDTLDHKNSLLDEREAGLTE 137
>sp|Q74IE2|SYFB_LACJO Phenylalanine--tRNA ligase beta subunit OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=pheT PE=3 SV=1
Length = 804
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 66 ELNQGKF----KLARMF--ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119
+LN GK+ ++ ++ +I+ + S++FL EK+T DE++A EK E D+ E
Sbjct: 738 KLNGGKYLYDIRVIDVYAGSQIESGHKSISYSLTFLNEKDTLTDEVVATAMEKIEADLKE 797
Query: 120 AV 121
++
Sbjct: 798 SL 799
>sp|A0LV54|RS2_ACIC1 30S ribosomal protein S2 OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=rpsB PE=3 SV=1
Length = 275
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108
+++Q +E+E+L+Q + Q K A M +R EK +LER++ +++ + V
Sbjct: 109 KRLQRLKELELLEQNGSLFGQATKKEALMLQR---EKEKLERTLGGIRDMTRLPAAVWIV 165
Query: 109 LTEKTEVDVDEAVTTTAPI 127
T+K + VDEA P+
Sbjct: 166 DTKKEHIAVDEARKLGIPV 184
>sp|Q9IR51|MREP_MDV1 Master replication protein OS=Milk vetch dwarf virus (isolate N)
GN=DNA-R PE=3 SV=1
Length = 286
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97
+EDK+R MN+ K+ + IE +++ N ++ L + K+KA IS+ +
Sbjct: 100 IEDKLREVMNDMKITGKRPIEYIEECCNTYDKSASTLREFRGELKKKKA----IISWELQ 155
Query: 98 KETELDEILAVLTEK 112
++ +DE+ +L E+
Sbjct: 156 RKPWMDEVDTLLQER 170
>sp|Q9L637|RPOB_AMYMD DNA-directed RNA polymerase subunit beta OS=Amycolatopsis
mediterranei GN=rpoB PE=3 SV=1
Length = 1167
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 5 LTRWTLDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTE 64
+ R+ +++++G S+P + GT+T+E I + +E +R E K+ A EI +T+
Sbjct: 304 VGRYKVNKKLGLSTPIENGTLTEEDI----VTIIEYLVRLHAGEDKMTAANNTEIPVETD 359
Query: 65 NELNQGKFKLARMFERIDKE-KAELERSISFLKEKETELDEILAVLTEKTEVDV 117
+ + G ++ + E I + + L R+ ++E+ T D + +T +T +++
Sbjct: 360 DIDHFGNRRIRTVGELIQNQIRVGLSRTERVVRERMTTQD--VEAITPQTLINI 411
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,586,497
Number of Sequences: 539616
Number of extensions: 1587380
Number of successful extensions: 14344
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 864
Number of HSP's that attempted gapping in prelim test: 11928
Number of HSP's gapped (non-prelim): 3170
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)