Query psy4582
Match_columns 133
No_of_seqs 69 out of 71
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:39:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2391|consensus 99.9 3.7E-22 8.1E-27 168.4 13.8 108 23-133 200-307 (365)
2 KOG2391|consensus 97.4 0.002 4.4E-08 55.5 10.1 65 46-110 216-280 (365)
3 PF09304 Cortex-I_coil: Cortex 95.7 0.3 6.5E-06 35.8 10.5 65 44-108 12-76 (107)
4 PF06005 DUF904: Protein of un 93.8 1.4 3E-05 29.9 10.5 66 35-101 6-71 (72)
5 PF12329 TMF_DNA_bd: TATA elem 92.8 2 4.3E-05 29.1 8.9 62 49-110 6-67 (74)
6 COG4026 Uncharacterized protei 90.6 9.2 0.0002 32.0 12.3 68 45-112 139-206 (290)
7 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.5 5.5 0.00012 29.2 10.2 60 50-109 51-117 (132)
8 PF06785 UPF0242: Uncharacteri 90.1 8 0.00017 33.9 11.8 78 26-103 61-161 (401)
9 PF10473 CENP-F_leu_zip: Leuci 89.5 7.7 0.00017 29.5 10.5 61 49-109 46-106 (140)
10 TIGR01005 eps_transp_fam exopo 89.5 6.9 0.00015 36.1 11.7 90 38-128 328-427 (754)
11 PF04912 Dynamitin: Dynamitin 89.4 8.5 0.00018 33.0 11.6 63 45-110 326-388 (388)
12 PRK15422 septal ring assembly 89.2 5.8 0.00013 27.7 9.9 50 52-101 22-78 (79)
13 PRK10884 SH3 domain-containing 89.2 8.2 0.00018 30.9 10.6 47 64-110 120-166 (206)
14 PF10475 DUF2450: Protein of u 88.3 13 0.00028 30.6 12.0 59 32-90 41-99 (291)
15 PF07106 TBPIP: Tat binding pr 87.4 5 0.00011 30.3 8.1 62 50-111 74-137 (169)
16 PF08317 Spc7: Spc7 kinetochor 86.6 17 0.00036 30.5 11.5 35 76-110 230-264 (325)
17 TIGR03017 EpsF chain length de 86.5 17 0.00037 31.0 11.6 91 37-128 293-393 (444)
18 PF11180 DUF2968: Protein of u 86.2 16 0.00035 29.4 12.2 76 33-108 111-186 (192)
19 PRK11637 AmiB activator; Provi 85.7 17 0.00036 31.5 11.3 31 78-108 221-251 (428)
20 KOG0447|consensus 85.6 7.6 0.00016 36.6 9.4 64 24-89 201-264 (980)
21 COG4942 Membrane-bound metallo 85.5 8.5 0.00018 34.3 9.4 14 72-85 62-75 (420)
22 KOG2264|consensus 85.4 11 0.00024 35.4 10.4 75 43-117 81-155 (907)
23 PRK11637 AmiB activator; Provi 85.2 17 0.00037 31.4 11.1 21 75-95 232-252 (428)
24 PF12325 TMF_TATA_bd: TATA ele 85.0 13 0.00029 27.4 11.6 55 51-105 47-101 (120)
25 PF11559 ADIP: Afadin- and alp 84.6 14 0.0003 27.3 13.4 70 32-101 34-105 (151)
26 PF09726 Macoilin: Transmembra 84.4 7 0.00015 36.7 8.8 54 45-98 422-482 (697)
27 PRK14161 heat shock protein Gr 83.7 14 0.0003 29.0 9.1 92 38-132 16-112 (178)
28 PRK04778 septation ring format 83.4 13 0.00028 33.6 9.9 64 50-113 378-441 (569)
29 PF08317 Spc7: Spc7 kinetochor 82.9 9.6 0.00021 32.0 8.4 42 52-93 220-261 (325)
30 PF11932 DUF3450: Protein of u 82.7 23 0.0005 28.4 12.1 64 42-105 43-106 (251)
31 KOG2991|consensus 82.5 9.7 0.00021 32.4 8.2 61 49-109 237-297 (330)
32 PF07889 DUF1664: Protein of u 82.4 18 0.0004 27.0 12.4 58 52-109 65-122 (126)
33 TIGR03752 conj_TIGR03752 integ 82.2 18 0.00039 32.7 10.2 65 45-109 70-142 (472)
34 KOG4657|consensus 82.1 21 0.00046 29.6 9.8 42 68-109 85-126 (246)
35 TIGR03007 pepcterm_ChnLen poly 81.9 19 0.00042 31.2 10.2 83 46-128 315-410 (498)
36 PF11932 DUF3450: Protein of u 81.7 25 0.00055 28.2 11.1 58 52-109 39-96 (251)
37 KOG3684|consensus 81.6 22 0.00049 32.2 10.5 71 33-111 397-469 (489)
38 PRK03947 prefoldin subunit alp 81.4 18 0.0004 26.3 9.5 31 77-107 102-132 (140)
39 PF05266 DUF724: Protein of un 81.4 25 0.00054 27.8 10.0 35 75-109 130-164 (190)
40 COG3206 GumC Uncharacterized p 81.0 37 0.00079 29.5 11.6 97 33-130 320-426 (458)
41 TIGR02231 conserved hypothetic 79.9 43 0.00093 29.7 12.4 46 67-112 129-174 (525)
42 smart00787 Spc7 Spc7 kinetocho 79.9 36 0.00079 28.8 12.1 71 41-111 172-260 (312)
43 KOG0995|consensus 79.8 35 0.00077 31.6 11.3 41 66-106 284-324 (581)
44 PF01763 Herpes_UL6: Herpesvir 79.5 22 0.00048 32.7 10.0 55 27-85 353-407 (557)
45 PF14662 CCDC155: Coiled-coil 79.5 24 0.00053 28.3 9.1 58 46-103 72-129 (193)
46 COG4942 Membrane-bound metallo 78.6 49 0.0011 29.6 13.1 46 16-61 128-174 (420)
47 PF12329 TMF_DNA_bd: TATA elem 78.4 18 0.00038 24.4 9.2 62 47-108 11-72 (74)
48 PF05384 DegS: Sensor protein 78.3 29 0.00063 26.8 11.3 84 24-113 73-156 (159)
49 PF10146 zf-C4H2: Zinc finger- 78.1 36 0.00078 27.8 10.4 54 52-109 47-100 (230)
50 PRK10884 SH3 domain-containing 78.1 34 0.00073 27.4 10.8 25 67-91 137-161 (206)
51 smart00787 Spc7 Spc7 kinetocho 77.5 43 0.00094 28.4 11.5 46 52-97 215-260 (312)
52 PF07888 CALCOCO1: Calcium bin 77.4 34 0.00075 31.5 10.5 55 50-104 173-227 (546)
53 PF09738 DUF2051: Double stran 77.4 44 0.00095 28.4 14.4 81 28-109 80-173 (302)
54 PF13094 CENP-Q: CENP-Q, a CEN 77.1 28 0.00061 26.0 10.3 69 40-108 23-91 (160)
55 PRK00106 hypothetical protein; 76.2 63 0.0014 29.6 12.9 40 64-103 103-142 (535)
56 PF09798 LCD1: DNA damage chec 75.6 20 0.00044 33.6 8.7 59 42-100 2-64 (654)
57 COG0576 GrpE Molecular chapero 75.5 38 0.00082 26.7 9.5 47 85-132 82-128 (193)
58 PF03961 DUF342: Protein of un 75.4 32 0.0007 30.0 9.6 78 44-121 337-420 (451)
59 PF04899 MbeD_MobD: MbeD/MobD 75.2 23 0.00049 24.0 9.9 49 62-110 21-69 (70)
60 PF10174 Cast: RIM-binding pro 75.0 20 0.00044 34.2 8.7 36 73-108 111-146 (775)
61 PHA02562 46 endonuclease subun 74.6 57 0.0012 28.6 11.0 41 67-107 356-396 (562)
62 PF10226 DUF2216: Uncharacteri 73.5 47 0.001 26.8 11.3 69 41-109 41-127 (195)
63 PF10211 Ax_dynein_light: Axon 73.4 42 0.00091 26.3 12.6 41 69-109 120-160 (189)
64 KOG0994|consensus 72.8 27 0.00058 35.5 9.0 61 39-99 1691-1751(1758)
65 PF05700 BCAS2: Breast carcino 72.6 47 0.001 26.4 12.2 15 5-19 83-97 (221)
66 PRK12704 phosphodiesterase; Pr 71.8 78 0.0017 28.7 13.0 39 64-102 88-126 (520)
67 KOG4673|consensus 71.7 36 0.00079 32.7 9.4 12 120-131 635-646 (961)
68 KOG4331|consensus 71.7 25 0.00054 34.0 8.4 100 28-127 229-337 (865)
69 PF10267 Tmemb_cc2: Predicted 71.5 72 0.0016 28.2 11.7 28 33-61 212-239 (395)
70 KOG0971|consensus 70.5 33 0.00072 33.9 9.0 15 96-110 461-475 (1243)
71 PF00038 Filament: Intermediat 70.1 25 0.00053 28.6 7.3 37 46-82 73-109 (312)
72 PF12325 TMF_TATA_bd: TATA ele 70.0 42 0.0009 24.8 10.1 48 33-88 16-63 (120)
73 PRK10698 phage shock protein P 69.8 56 0.0012 26.2 11.2 32 78-109 101-132 (222)
74 COG2433 Uncharacterized conser 69.5 59 0.0013 30.6 10.1 41 70-110 468-508 (652)
75 PF06160 EzrA: Septation ring 69.3 53 0.0011 29.8 9.8 65 51-115 375-439 (560)
76 PF10018 Med4: Vitamin-D-recep 68.9 51 0.0011 25.5 8.5 76 38-123 10-89 (188)
77 TIGR03319 YmdA_YtgF conserved 68.8 91 0.002 28.2 13.2 42 64-105 82-123 (514)
78 COG3074 Uncharacterized protei 68.7 36 0.00077 23.5 9.4 38 64-101 41-78 (79)
79 PF05010 TACC: Transforming ac 68.7 60 0.0013 26.1 10.1 65 45-109 73-137 (207)
80 PF03148 Tektin: Tektin family 68.5 78 0.0017 27.3 12.1 73 34-106 223-295 (384)
81 PF05529 Bap31: B-cell recepto 68.2 52 0.0011 25.2 8.4 37 68-104 153-189 (192)
82 PHA01750 hypothetical protein 68.2 36 0.00077 23.3 6.6 21 30-50 28-48 (75)
83 PRK13729 conjugal transfer pil 68.0 70 0.0015 29.0 10.1 48 45-92 73-120 (475)
84 PF04156 IncA: IncA protein; 67.5 52 0.0011 24.9 10.2 12 50-61 104-115 (191)
85 PF10168 Nup88: Nuclear pore c 67.5 1E+02 0.0022 29.2 11.5 56 37-92 558-616 (717)
86 PF07889 DUF1664: Protein of u 67.4 50 0.0011 24.7 10.7 58 46-103 66-123 (126)
87 PF07888 CALCOCO1: Calcium bin 67.2 73 0.0016 29.4 10.2 42 56-97 186-227 (546)
88 PF12614 RRF_GI: Ribosome recy 67.1 32 0.0007 26.0 6.7 89 32-120 10-108 (128)
89 TIGR01554 major_cap_HK97 phage 67.0 77 0.0017 26.7 10.2 9 52-60 10-18 (378)
90 PF07795 DUF1635: Protein of u 66.7 50 0.0011 26.9 8.2 52 46-97 6-61 (214)
91 PF11559 ADIP: Afadin- and alp 66.6 49 0.0011 24.4 8.0 67 43-109 54-120 (151)
92 TIGR01069 mutS2 MutS2 family p 66.4 92 0.002 29.6 11.0 67 44-110 518-589 (771)
93 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.3 49 0.0011 24.2 10.3 57 45-104 63-119 (132)
94 KOG4571|consensus 65.9 43 0.00094 28.6 8.0 45 39-83 239-283 (294)
95 PRK09039 hypothetical protein; 65.1 88 0.0019 26.7 11.6 8 110-117 208-215 (343)
96 PRK11091 aerobic respiration c 65.0 95 0.002 28.3 10.6 61 71-131 126-187 (779)
97 TIGR02338 gimC_beta prefoldin, 64.4 33 0.00072 24.3 6.1 38 71-108 69-106 (110)
98 cd00584 Prefoldin_alpha Prefol 64.3 30 0.00064 24.8 6.0 31 72-102 9-39 (129)
99 TIGR00996 Mtu_fam_mce virulenc 64.3 75 0.0016 25.6 9.0 49 61-109 177-225 (291)
100 PF13747 DUF4164: Domain of un 64.2 46 0.001 23.2 11.1 28 76-103 46-73 (89)
101 PF05816 TelA: Toxic anion res 64.1 88 0.0019 26.4 11.6 79 31-109 71-149 (333)
102 PF14662 CCDC155: Coiled-coil 63.8 76 0.0017 25.5 10.5 59 52-110 64-122 (193)
103 PRK10361 DNA recombination pro 63.8 1.2E+02 0.0025 27.6 11.9 57 53-109 62-118 (475)
104 PF01920 Prefoldin_2: Prefoldi 63.8 43 0.00093 22.6 8.9 61 48-108 19-94 (106)
105 COG1579 Zn-ribbon protein, pos 63.7 83 0.0018 26.0 9.8 44 66-109 100-143 (239)
106 PF04799 Fzo_mitofusin: fzo-li 63.3 62 0.0014 25.5 7.9 86 24-109 70-163 (171)
107 PRK09841 cryptic autophosphory 63.2 60 0.0013 30.2 9.1 58 70-128 364-421 (726)
108 PRK00846 hypothetical protein; 63.1 47 0.001 22.9 7.9 31 73-103 31-61 (77)
109 PF15058 Speriolin_N: Sperioli 62.6 31 0.00066 27.9 6.2 56 72-128 8-64 (200)
110 PF04949 Transcrip_act: Transc 62.6 73 0.0016 24.9 13.8 91 20-110 18-122 (159)
111 PF14712 Snapin_Pallidin: Snap 62.6 45 0.00097 22.5 10.7 42 42-83 8-49 (92)
112 PF13807 GNVR: G-rich domain o 62.1 34 0.00073 22.8 5.6 52 76-128 4-55 (82)
113 PF07798 DUF1640: Protein of u 62.1 69 0.0015 24.5 10.1 21 63-83 85-105 (177)
114 PF05600 DUF773: Protein of un 61.7 1.3E+02 0.0027 27.3 10.6 61 46-109 437-497 (507)
115 COG1196 Smc Chromosome segrega 61.6 1.4E+02 0.003 29.5 11.5 43 66-108 867-909 (1163)
116 PHA02562 46 endonuclease subun 61.4 75 0.0016 27.8 9.0 36 75-110 212-247 (562)
117 PF00038 Filament: Intermediat 61.3 87 0.0019 25.4 13.2 55 56-110 196-250 (312)
118 PF10498 IFT57: Intra-flagella 61.2 1.1E+02 0.0024 26.5 11.5 50 49-98 271-320 (359)
119 PF07106 TBPIP: Tat binding pr 60.6 70 0.0015 24.0 8.2 54 44-97 82-137 (169)
120 COG3883 Uncharacterized protei 60.5 1E+02 0.0022 25.9 10.7 66 44-109 48-113 (265)
121 COG3883 Uncharacterized protei 60.0 1E+02 0.0023 25.9 11.1 63 44-106 41-103 (265)
122 COG1196 Smc Chromosome segrega 60.0 94 0.002 30.6 10.1 21 86-106 873-893 (1163)
123 KOG0995|consensus 59.8 1.5E+02 0.0033 27.7 10.8 53 58-110 262-314 (581)
124 PF10146 zf-C4H2: Zinc finger- 59.7 95 0.0021 25.3 8.9 53 46-98 51-103 (230)
125 PF04859 DUF641: Plant protein 59.4 74 0.0016 23.9 8.0 44 31-75 85-128 (131)
126 COG1463 Ttg2C ABC-type transpo 59.2 1.1E+02 0.0024 25.9 10.0 77 50-127 175-251 (359)
127 PRK14140 heat shock protein Gr 58.8 91 0.002 24.8 9.9 44 87-132 85-128 (191)
128 KOG0250|consensus 58.8 2E+02 0.0044 28.8 11.9 45 65-109 390-434 (1074)
129 PF09730 BicD: Microtubule-ass 58.5 1.7E+02 0.0037 27.9 12.1 60 46-105 46-105 (717)
130 PRK11020 hypothetical protein; 58.0 71 0.0015 23.8 7.0 50 48-99 5-54 (118)
131 PF15079 DUF4546: Domain of un 58.0 48 0.001 26.6 6.5 26 42-67 52-77 (205)
132 KOG0964|consensus 57.6 1.1E+02 0.0024 30.6 10.0 64 25-88 804-870 (1200)
133 PF05911 DUF869: Plant protein 57.4 1.4E+02 0.003 28.7 10.5 71 39-109 83-153 (769)
134 KOG2010|consensus 57.4 1.3E+02 0.0027 26.6 9.4 17 30-46 116-132 (405)
135 PF08614 ATG16: Autophagy prot 57.3 88 0.0019 24.2 9.1 41 68-108 143-184 (194)
136 PLN02678 seryl-tRNA synthetase 57.3 1.4E+02 0.0031 26.6 10.6 31 78-111 80-110 (448)
137 cd07627 BAR_Vps5p The Bin/Amph 57.3 93 0.002 24.4 10.9 38 32-69 97-136 (216)
138 PRK01203 prefoldin subunit alp 57.1 63 0.0014 24.3 6.7 50 74-123 5-54 (130)
139 COG5509 Uncharacterized small 57.0 57 0.0012 21.9 5.9 54 19-80 11-64 (65)
140 PF03234 CDC37_N: Cdc37 N term 57.0 81 0.0018 24.8 7.6 88 31-132 26-113 (177)
141 KOG0161|consensus 56.9 1.9E+02 0.0041 30.8 11.9 48 62-109 950-997 (1930)
142 PRK14154 heat shock protein Gr 56.9 1E+02 0.0022 24.9 8.8 16 92-107 105-120 (208)
143 TIGR03319 YmdA_YtgF conserved 56.8 1.5E+02 0.0033 26.8 12.6 37 67-103 78-114 (514)
144 PRK10947 global DNA-binding tr 56.6 60 0.0013 24.4 6.6 53 66-122 25-77 (135)
145 PF09789 DUF2353: Uncharacteri 56.6 92 0.002 26.8 8.4 60 69-128 140-202 (319)
146 TIGR00293 prefoldin, archaeal 56.5 69 0.0015 22.7 6.7 32 78-109 8-39 (126)
147 PF09486 HrpB7: Bacterial type 56.4 92 0.002 24.1 9.6 62 40-101 78-139 (158)
148 PF15011 CK2S: Casein Kinase 2 56.4 91 0.002 24.0 9.6 84 42-125 20-120 (168)
149 PRK14143 heat shock protein Gr 56.2 1.1E+02 0.0024 25.1 9.2 19 90-108 118-136 (238)
150 PF08286 Spc24: Spc24 subunit 56.1 4.1 8.9E-05 29.4 0.2 36 71-106 8-43 (118)
151 PRK09510 tolA cell envelope in 55.8 1E+02 0.0022 27.2 8.7 10 24-33 49-58 (387)
152 cd00890 Prefoldin Prefoldin is 55.5 69 0.0015 22.4 6.5 42 68-109 86-127 (129)
153 COG4026 Uncharacterized protei 55.3 1.3E+02 0.0027 25.4 12.3 64 41-104 139-205 (290)
154 PF00261 Tropomyosin: Tropomyo 55.2 1.1E+02 0.0023 24.5 10.7 64 46-109 146-209 (237)
155 TIGR03185 DNA_S_dndD DNA sulfu 54.9 1.3E+02 0.0028 27.5 9.7 34 75-108 434-467 (650)
156 PF04977 DivIC: Septum formati 54.8 35 0.00076 21.9 4.6 35 73-107 28-62 (80)
157 PRK10698 phage shock protein P 54.8 1.1E+02 0.0024 24.5 10.2 74 33-106 2-75 (222)
158 KOG0250|consensus 54.3 1.8E+02 0.0039 29.1 10.8 58 45-102 665-722 (1074)
159 PF02403 Seryl_tRNA_N: Seryl-t 54.3 70 0.0015 22.1 8.7 62 47-108 35-99 (108)
160 PF00435 Spectrin: Spectrin re 53.4 57 0.0012 20.8 9.8 56 44-99 44-103 (105)
161 PF10046 BLOC1_2: Biogenesis o 53.3 76 0.0016 22.2 8.2 60 48-111 35-94 (99)
162 PRK14155 heat shock protein Gr 53.3 1.1E+02 0.0024 24.6 8.1 16 46-61 32-47 (208)
163 PF14257 DUF4349: Domain of un 53.0 1E+02 0.0023 24.6 7.9 60 47-107 131-193 (262)
164 PF12777 MT: Microtubule-bindi 52.7 1.2E+02 0.0027 25.5 8.6 42 69-110 249-290 (344)
165 PF01920 Prefoldin_2: Prefoldi 52.7 65 0.0014 21.7 5.8 43 67-109 60-102 (106)
166 PF05064 Nsp1_C: Nsp1-like C-t 52.6 32 0.00069 24.9 4.4 71 41-111 26-99 (116)
167 PF11221 Med21: Subunit 21 of 52.5 95 0.0021 23.1 10.1 70 24-93 61-139 (144)
168 COG4477 EzrA Negative regulato 52.4 1.8E+02 0.0039 27.1 10.0 63 50-112 377-439 (570)
169 PF10805 DUF2730: Protein of u 52.1 83 0.0018 22.3 10.4 75 34-109 15-91 (106)
170 PRK00736 hypothetical protein; 51.8 68 0.0015 21.2 7.9 29 73-101 23-51 (68)
171 PRK10328 DNA binding protein, 51.2 83 0.0018 23.7 6.6 52 67-122 26-77 (134)
172 cd00632 Prefoldin_beta Prefold 50.9 83 0.0018 21.9 10.5 41 69-109 63-103 (105)
173 PF12718 Tropomyosin_1: Tropom 50.7 1E+02 0.0023 23.0 8.7 27 73-99 32-58 (143)
174 COG1382 GimC Prefoldin, chaper 50.6 99 0.0022 23.0 6.8 40 70-109 71-110 (119)
175 PRK02119 hypothetical protein; 50.4 75 0.0016 21.3 7.8 36 75-110 22-57 (73)
176 PF07851 TMPIT: TMPIT-like pro 50.3 1.3E+02 0.0028 26.0 8.4 44 66-109 15-58 (330)
177 KOG0946|consensus 49.8 40 0.00087 32.8 5.6 52 70-121 898-949 (970)
178 KOG3091|consensus 49.5 1.6E+02 0.0034 27.1 9.1 86 23-109 409-500 (508)
179 TIGR00606 rad50 rad50. This fa 49.4 2E+02 0.0042 28.8 10.5 59 52-110 981-1041(1311)
180 COG5185 HEC1 Protein involved 49.4 2.2E+02 0.0048 26.4 10.0 74 33-106 316-398 (622)
181 TIGR00414 serS seryl-tRNA synt 49.4 1.8E+02 0.0039 25.4 10.6 34 74-110 74-107 (418)
182 PF10234 Cluap1: Clusterin-ass 49.4 1.6E+02 0.0034 24.7 9.2 16 77-92 184-199 (267)
183 PF04859 DUF641: Plant protein 49.3 1.1E+02 0.0024 23.0 7.0 40 73-112 91-130 (131)
184 PF00170 bZIP_1: bZIP transcri 49.3 67 0.0014 20.4 7.8 43 41-83 19-61 (64)
185 KOG0993|consensus 49.1 1.8E+02 0.004 26.5 9.3 34 70-103 149-182 (542)
186 PF14197 Cep57_CLD_2: Centroso 49.0 78 0.0017 21.1 7.9 33 76-108 26-58 (69)
187 KOG0804|consensus 48.5 2.2E+02 0.0047 26.1 11.9 73 33-109 375-447 (493)
188 TIGR02977 phageshock_pspA phag 48.5 1.3E+02 0.0029 23.7 10.7 76 33-108 2-77 (219)
189 PRK05892 nucleoside diphosphat 48.2 93 0.002 23.7 6.6 19 91-109 55-73 (158)
190 PF13870 DUF4201: Domain of un 48.0 1.2E+02 0.0026 22.9 9.6 62 45-106 109-175 (177)
191 KOG0996|consensus 48.0 1.9E+02 0.0041 29.5 9.9 50 57-106 386-435 (1293)
192 PF15254 CCDC14: Coiled-coil d 47.8 1.3E+02 0.0027 29.3 8.5 93 29-122 398-508 (861)
193 cd00890 Prefoldin Prefoldin is 47.8 94 0.002 21.7 6.2 36 70-105 7-42 (129)
194 KOG2264|consensus 47.7 1.9E+02 0.0041 27.6 9.5 55 38-93 91-145 (907)
195 PRK00295 hypothetical protein; 47.3 81 0.0018 20.8 7.9 30 73-102 23-52 (68)
196 COG0466 Lon ATP-dependent Lon 47.3 77 0.0017 30.5 7.0 37 35-71 207-246 (782)
197 PF04102 SlyX: SlyX; InterPro 47.2 80 0.0017 20.7 7.4 31 73-103 22-52 (69)
198 PF05064 Nsp1_C: Nsp1-like C-t 47.2 23 0.00051 25.6 3.0 55 52-106 54-108 (116)
199 PRK05771 V-type ATP synthase s 47.2 1.7E+02 0.0037 26.8 9.2 44 75-118 92-135 (646)
200 PRK02119 hypothetical protein; 47.0 86 0.0019 21.0 9.1 35 71-105 25-59 (73)
201 PRK06975 bifunctional uroporph 47.0 1.9E+02 0.0042 26.8 9.6 38 73-110 375-412 (656)
202 PF10458 Val_tRNA-synt_C: Valy 46.9 54 0.0012 21.2 4.5 23 75-97 3-25 (66)
203 PF12718 Tropomyosin_1: Tropom 46.8 1.2E+02 0.0026 22.7 9.8 12 50-61 30-41 (143)
204 PRK00888 ftsB cell division pr 46.7 1E+02 0.0023 21.9 6.5 31 77-107 42-72 (105)
205 PF09726 Macoilin: Transmembra 46.7 1E+02 0.0022 29.1 7.7 55 53-110 458-515 (697)
206 PF10046 BLOC1_2: Biogenesis o 46.6 99 0.0021 21.6 10.6 53 46-98 40-95 (99)
207 PF15619 Lebercilin: Ciliary p 46.6 1.5E+02 0.0031 23.5 10.3 63 44-110 75-145 (194)
208 PF04799 Fzo_mitofusin: fzo-li 46.6 1.4E+02 0.0031 23.5 8.1 37 40-76 119-155 (171)
209 PRK00295 hypothetical protein; 46.4 84 0.0018 20.7 7.2 42 70-111 13-54 (68)
210 KOG1853|consensus 46.1 1.9E+02 0.0041 24.8 9.9 33 72-104 94-126 (333)
211 PF13094 CENP-Q: CENP-Q, a CEN 46.0 1.2E+02 0.0027 22.5 9.3 45 66-110 38-82 (160)
212 TIGR02338 gimC_beta prefoldin, 46.0 1E+02 0.0023 21.7 9.1 39 73-111 64-102 (110)
213 PF09486 HrpB7: Bacterial type 45.9 1.4E+02 0.003 23.1 8.0 40 80-119 33-73 (158)
214 PF05377 FlaC_arch: Flagella a 45.8 82 0.0018 20.5 5.9 31 76-106 7-37 (55)
215 PRK00888 ftsB cell division pr 45.7 97 0.0021 22.1 6.0 29 55-83 34-62 (105)
216 PF00769 ERM: Ezrin/radixin/mo 45.6 1.6E+02 0.0036 23.9 8.8 58 46-103 52-116 (246)
217 PRK00106 hypothetical protein; 45.6 2.4E+02 0.0053 25.9 12.6 34 70-103 102-135 (535)
218 PRK09343 prefoldin subunit bet 45.3 97 0.0021 22.5 6.1 39 71-109 73-111 (121)
219 COG4487 Uncharacterized protei 45.0 2.1E+02 0.0045 25.8 9.1 67 52-118 364-431 (438)
220 KOG4552|consensus 44.7 1.8E+02 0.004 24.2 10.9 42 66-107 64-105 (272)
221 PRK04863 mukB cell division pr 44.7 2.3E+02 0.0049 29.3 10.2 63 48-110 985-1047(1486)
222 PF12777 MT: Microtubule-bindi 44.5 1.4E+02 0.003 25.2 7.7 33 74-106 247-279 (344)
223 KOG0996|consensus 44.3 3.7E+02 0.008 27.5 12.4 56 50-105 794-849 (1293)
224 PF11944 DUF3461: Protein of u 44.2 1.4E+02 0.003 22.6 6.9 44 56-109 82-125 (125)
225 PRK04863 mukB cell division pr 44.1 2.2E+02 0.0048 29.4 10.0 40 70-109 384-423 (1486)
226 PF02183 HALZ: Homeobox associ 43.9 76 0.0016 19.5 5.1 33 67-99 10-42 (45)
227 PF05010 TACC: Transforming ac 43.9 1.7E+02 0.0037 23.5 10.6 66 41-109 136-201 (207)
228 PTZ00186 heat shock 70 kDa pre 43.8 2.1E+02 0.0045 26.6 9.3 87 24-110 526-620 (657)
229 PF00435 Spectrin: Spectrin re 43.4 85 0.0018 19.9 7.8 55 52-106 35-89 (105)
230 PRK09343 prefoldin subunit bet 43.2 1.3E+02 0.0027 21.9 6.4 37 74-110 69-105 (121)
231 PRK14148 heat shock protein Gr 43.2 1.7E+02 0.0037 23.3 8.5 66 65-132 61-131 (195)
232 PF13815 Dzip-like_N: Iguana/D 43.1 1.2E+02 0.0027 21.7 6.5 53 50-102 61-113 (118)
233 PRK06975 bifunctional uroporph 43.1 2.8E+02 0.006 25.8 9.9 40 64-103 373-412 (656)
234 PF10211 Ax_dynein_light: Axon 43.0 1.6E+02 0.0035 23.0 10.9 27 72-98 130-156 (189)
235 PRK02793 phi X174 lysis protei 42.8 1E+02 0.0022 20.6 7.7 35 76-110 22-56 (72)
236 KOG4643|consensus 42.8 2.8E+02 0.0061 28.0 10.1 68 42-109 409-476 (1195)
237 COG2433 Uncharacterized conser 42.6 3E+02 0.0066 26.1 10.5 30 74-103 479-508 (652)
238 PRK00736 hypothetical protein; 42.6 98 0.0021 20.4 7.6 42 71-112 14-55 (68)
239 PF05478 Prominin: Prominin; 42.3 1.6E+02 0.0036 27.8 8.5 44 48-91 246-289 (806)
240 TIGR02449 conserved hypothetic 42.1 1E+02 0.0022 20.5 9.3 54 54-107 6-59 (65)
241 PF08898 DUF1843: Domain of un 42.1 67 0.0015 20.8 4.2 28 56-83 25-52 (53)
242 TIGR03185 DNA_S_dndD DNA sulfu 42.0 2.8E+02 0.006 25.4 11.6 8 41-48 186-193 (650)
243 PTZ00464 SNF-7-like protein; P 41.8 1.8E+02 0.004 23.3 7.8 16 66-81 106-121 (211)
244 COG1340 Uncharacterized archae 41.8 2.2E+02 0.0048 24.3 11.2 61 46-106 25-85 (294)
245 KOG0971|consensus 41.7 3.2E+02 0.0069 27.5 10.2 26 43-68 398-423 (1243)
246 TIGR00606 rad50 rad50. This fa 41.5 3.8E+02 0.0082 26.9 12.5 70 33-103 305-374 (1311)
247 PF09731 Mitofilin: Mitochondr 41.4 2.6E+02 0.0057 25.0 12.9 29 81-109 369-397 (582)
248 PF13851 GAS: Growth-arrest sp 41.3 1.8E+02 0.0038 23.0 8.1 50 46-95 32-81 (201)
249 TIGR01005 eps_transp_fam exopo 41.3 2E+02 0.0043 26.6 8.8 24 82-105 344-367 (754)
250 PF09304 Cortex-I_coil: Cortex 40.9 1.4E+02 0.0031 21.9 10.5 61 50-110 32-92 (107)
251 PF10267 Tmemb_cc2: Predicted 40.9 2.6E+02 0.0056 24.8 10.7 45 44-88 244-288 (395)
252 PF09766 FimP: Fms-interacting 40.8 1.7E+02 0.0036 25.1 7.7 47 60-106 106-152 (355)
253 KOG4603|consensus 40.7 1.9E+02 0.0041 23.3 7.4 25 67-91 91-115 (201)
254 PRK01433 hscA chaperone protei 40.7 2.9E+02 0.0063 25.3 10.7 83 24-108 481-572 (595)
255 PF11068 YlqD: YlqD protein; 40.7 1.5E+02 0.0033 22.1 10.9 66 38-103 17-87 (131)
256 KOG0976|consensus 40.6 3.9E+02 0.0084 26.7 11.3 67 24-90 83-159 (1265)
257 PF07439 DUF1515: Protein of u 40.4 1.5E+02 0.0033 21.9 9.2 54 57-110 14-67 (112)
258 PF07246 Phlebovirus_NSM: Phle 40.4 1.2E+02 0.0026 25.6 6.5 56 72-127 198-255 (264)
259 PF08182 Pedibin: Pedibin/Hym- 40.2 71 0.0015 19.0 3.7 30 74-103 2-31 (35)
260 PRK13729 conjugal transfer pil 40.2 2.2E+02 0.0048 25.9 8.6 26 83-108 97-122 (475)
261 COG5185 HEC1 Protein involved 40.0 2.9E+02 0.0063 25.7 9.2 30 78-107 332-361 (622)
262 PRK02793 phi X174 lysis protei 39.8 1.1E+02 0.0025 20.3 8.0 34 72-105 25-58 (72)
263 PF09755 DUF2046: Uncharacteri 39.4 2.5E+02 0.0054 24.2 10.2 38 79-116 264-301 (310)
264 TIGR02894 DNA_bind_RsfA transc 39.4 1.9E+02 0.004 22.7 8.0 45 65-109 107-151 (161)
265 TIGR03752 conj_TIGR03752 integ 39.4 3E+02 0.0065 25.1 11.1 63 40-102 69-142 (472)
266 PF08826 DMPK_coil: DMPK coile 39.4 1.1E+02 0.0024 20.1 9.1 21 82-102 38-58 (61)
267 PF09596 MamL-1: MamL-1 domain 39.3 1.1E+02 0.0025 20.2 5.2 15 34-48 3-17 (61)
268 PF00846 Hanta_nucleocap: Hant 39.3 2.4E+02 0.0053 25.3 8.5 50 60-109 11-68 (428)
269 TIGR02894 DNA_bind_RsfA transc 39.2 1.9E+02 0.0041 22.7 7.9 9 73-81 122-130 (161)
270 PF10473 CENP-F_leu_zip: Leuci 39.1 1.7E+02 0.0037 22.2 10.1 54 46-99 64-117 (140)
271 PRK06342 transcription elongat 39.0 1.2E+02 0.0026 23.2 6.0 20 91-110 65-84 (160)
272 PF03148 Tektin: Tektin family 39.0 2.5E+02 0.0055 24.2 11.8 71 46-116 41-111 (384)
273 COG1730 GIM5 Predicted prefold 38.4 1.2E+02 0.0027 23.1 5.9 37 73-109 91-127 (145)
274 PF14735 HAUS4: HAUS augmin-li 38.4 2.2E+02 0.0048 23.3 11.3 68 29-96 36-105 (238)
275 PRK14158 heat shock protein Gr 38.3 2E+02 0.0044 22.9 9.0 41 89-132 90-130 (194)
276 TIGR01010 BexC_CtrB_KpsE polys 38.3 2.2E+02 0.0047 23.8 7.9 56 72-128 274-329 (362)
277 TIGR00996 Mtu_fam_mce virulenc 38.0 2E+02 0.0043 23.1 7.4 75 56-130 193-270 (291)
278 KOG2751|consensus 37.7 2E+02 0.0044 26.0 7.8 46 60-105 181-226 (447)
279 PF02994 Transposase_22: L1 tr 37.6 1.3E+02 0.0028 25.9 6.6 13 52-64 109-121 (370)
280 KOG0999|consensus 37.5 2.6E+02 0.0056 26.6 8.7 59 46-104 119-177 (772)
281 PF06148 COG2: COG (conserved 37.5 38 0.00083 24.5 2.9 76 28-107 29-104 (133)
282 PF14584 DUF4446: Protein of u 37.5 1.8E+02 0.004 22.1 7.5 56 54-109 22-79 (151)
283 PF12072 DUF3552: Domain of un 37.2 2E+02 0.0043 22.4 10.7 26 66-91 86-111 (201)
284 PF10400 Vir_act_alpha_C: Viru 37.0 1.2E+02 0.0026 19.8 8.0 58 41-98 21-89 (90)
285 PF10174 Cast: RIM-binding pro 36.8 3.9E+02 0.0086 25.7 11.5 80 32-111 338-424 (775)
286 PRK03947 prefoldin subunit alp 36.7 1.6E+02 0.0035 21.3 9.8 30 77-106 95-124 (140)
287 PF12004 DUF3498: Domain of un 36.7 12 0.00025 34.0 0.0 36 71-106 432-467 (495)
288 PF10498 IFT57: Intra-flagella 36.4 2.9E+02 0.0062 24.0 10.3 34 39-72 254-287 (359)
289 KOG4603|consensus 36.1 2.3E+02 0.005 22.8 8.0 30 79-108 119-148 (201)
290 PRK11091 aerobic respiration c 36.1 3.4E+02 0.0074 24.7 9.5 54 46-99 108-161 (779)
291 PF15619 Lebercilin: Ciliary p 36.1 2.2E+02 0.0047 22.5 11.5 76 32-108 4-93 (194)
292 PF12128 DUF3584: Protein of u 35.8 4.2E+02 0.009 26.4 10.4 58 52-109 473-530 (1201)
293 PF08549 SWI-SNF_Ssr4: Fungal 35.8 25 0.00054 33.1 2.0 43 37-79 360-412 (669)
294 PF13851 GAS: Growth-arrest sp 35.7 2.2E+02 0.0048 22.4 10.7 18 44-61 58-75 (201)
295 PF09766 FimP: Fms-interacting 35.6 2.8E+02 0.0062 23.7 8.9 25 77-101 109-133 (355)
296 PF03962 Mnd1: Mnd1 family; I 35.5 2.2E+02 0.0047 22.3 8.6 54 57-110 109-169 (188)
297 PF09789 DUF2353: Uncharacteri 35.1 2.9E+02 0.0064 23.8 9.2 62 44-105 26-101 (319)
298 PF11945 WASH_WAHD: WAHD domai 35.1 2.8E+02 0.0061 23.5 8.7 52 61-112 21-72 (297)
299 smart00503 SynN Syntaxin N-ter 35.0 1.5E+02 0.0032 20.2 9.9 66 44-109 11-76 (117)
300 PF12269 zf-CpG_bind_C: CpG bi 34.9 1.6E+02 0.0034 24.4 6.4 64 38-101 5-68 (236)
301 PF14818 DUF4482: Domain of un 34.6 92 0.002 23.9 4.6 35 76-110 20-54 (141)
302 TIGR01837 PHA_granule_1 poly(h 34.5 1.8E+02 0.0039 21.1 9.7 19 91-109 97-115 (118)
303 PRK14127 cell division protein 34.4 1.8E+02 0.0039 21.2 6.0 28 81-108 42-69 (109)
304 PF10546 P63C: P63C domain; I 34.2 27 0.00059 24.9 1.6 41 5-45 28-68 (94)
305 PRK14150 heat shock protein Gr 34.2 2.3E+02 0.0051 22.3 8.5 64 68-132 62-130 (193)
306 smart00502 BBC B-Box C-termina 34.0 1.5E+02 0.0032 20.0 6.8 18 93-110 75-92 (127)
307 KOG4005|consensus 33.9 2.9E+02 0.0063 23.4 10.4 39 52-90 108-146 (292)
308 PRK14156 heat shock protein Gr 33.6 2.4E+02 0.0051 22.2 7.7 15 92-106 80-94 (177)
309 PF04111 APG6: Autophagy prote 33.5 2.9E+02 0.0063 23.2 12.1 16 94-109 117-132 (314)
310 PF04740 LXG: LXG domain of WX 33.3 2.1E+02 0.0046 21.6 11.7 93 17-110 87-190 (204)
311 PF00769 ERM: Ezrin/radixin/mo 33.2 2.7E+02 0.0058 22.6 9.1 55 46-100 38-92 (246)
312 PRK14151 heat shock protein Gr 33.1 2.4E+02 0.0051 22.0 7.7 16 46-61 39-54 (176)
313 PF09325 Vps5: Vps5 C terminal 33.0 2.2E+02 0.0049 21.8 11.2 72 33-104 118-191 (236)
314 TIGR00344 alaS alanine--tRNA l 32.8 3E+02 0.0065 26.6 8.7 48 55-102 705-752 (851)
315 PRK11519 tyrosine kinase; Prov 32.7 3.1E+02 0.0067 25.6 8.6 56 72-128 366-421 (719)
316 cd04776 HTH_GnyR Helix-Turn-He 32.6 1.9E+02 0.004 20.7 6.5 31 73-103 84-114 (118)
317 TIGR02977 phageshock_pspA phag 32.5 2.5E+02 0.0054 22.1 10.7 39 48-86 99-137 (219)
318 cd03402 Band_7_2 A subgroup of 32.4 24 0.00051 28.1 1.1 45 74-119 157-201 (219)
319 KOG4657|consensus 32.3 3E+02 0.0065 23.0 10.7 50 60-109 88-137 (246)
320 PF08232 Striatin: Striatin fa 32.2 1.8E+02 0.0038 21.6 5.8 32 76-107 32-63 (134)
321 KOG1666|consensus 32.2 2.9E+02 0.0062 22.7 9.9 52 44-95 156-207 (220)
322 PRK14162 heat shock protein Gr 32.1 2.6E+02 0.0057 22.2 9.1 42 89-132 89-130 (194)
323 PHA01750 hypothetical protein 32.1 1.7E+02 0.0036 20.0 5.4 10 95-104 61-70 (75)
324 TIGR00293 prefoldin, archaeal 32.0 1.8E+02 0.004 20.5 8.7 23 47-69 12-34 (126)
325 PRK10803 tol-pal system protei 31.9 2.8E+02 0.0061 22.6 7.9 36 66-101 58-93 (263)
326 KOG4593|consensus 31.6 1.6E+02 0.0035 28.1 6.5 58 41-98 552-622 (716)
327 KOG2260|consensus 31.4 1.7E+02 0.0038 25.8 6.3 32 78-109 42-73 (372)
328 PF09730 BicD: Microtubule-ass 31.1 4.8E+02 0.01 25.0 9.9 51 48-98 69-119 (717)
329 PF04375 HemX: HemX; InterPro 30.9 3.4E+02 0.0074 23.2 10.4 53 46-98 58-115 (372)
330 PF05557 MAD: Mitotic checkpoi 30.9 1.3E+02 0.0027 28.0 5.7 44 73-116 500-543 (722)
331 PF15070 GOLGA2L5: Putative go 30.9 4.5E+02 0.0097 24.6 10.5 18 93-110 163-180 (617)
332 PF04102 SlyX: SlyX; InterPro 30.8 1.6E+02 0.0034 19.3 6.2 40 71-110 13-52 (69)
333 KOG3335|consensus 30.7 2.5E+02 0.0053 22.5 6.6 52 71-123 101-152 (181)
334 COG5481 Uncharacterized conser 30.7 1.7E+02 0.0037 19.6 6.1 56 60-117 9-65 (67)
335 KOG0972|consensus 30.5 3.7E+02 0.0081 23.5 9.7 48 74-121 310-360 (384)
336 PF05565 Sipho_Gp157: Siphovir 30.4 2.4E+02 0.0052 21.3 8.0 30 71-100 56-85 (162)
337 PRK10636 putative ABC transpor 30.3 4.3E+02 0.0093 24.2 9.6 65 46-110 561-632 (638)
338 KOG0946|consensus 30.3 3.2E+02 0.0069 27.0 8.3 59 42-100 658-716 (970)
339 PRK05431 seryl-tRNA synthetase 30.2 3.8E+02 0.0082 23.5 10.6 24 74-97 71-94 (425)
340 PRK15352 type III secretion sy 30.2 2.2E+02 0.0048 20.8 10.5 81 24-108 29-120 (125)
341 PF15458 NTR2: Nineteen comple 30.1 3.1E+02 0.0066 22.4 7.4 33 46-78 220-252 (254)
342 COG1579 Zn-ribbon protein, pos 30.0 3.2E+02 0.0069 22.6 12.2 35 76-110 89-123 (239)
343 cd07665 BAR_SNX1 The Bin/Amphi 30.0 3.1E+02 0.0066 22.4 10.6 69 34-105 117-188 (234)
344 PF02994 Transposase_22: L1 tr 29.9 2.5E+02 0.0055 24.2 7.1 42 66-107 148-189 (370)
345 PF12269 zf-CpG_bind_C: CpG bi 29.9 1.3E+02 0.0029 24.8 5.1 42 70-111 23-64 (236)
346 PRK14147 heat shock protein Gr 29.8 2.7E+02 0.0058 21.6 8.5 11 51-61 42-52 (172)
347 TIGR03545 conserved hypothetic 29.5 4.5E+02 0.0097 24.2 10.4 52 66-117 213-264 (555)
348 PF10359 Fmp27_WPPW: RNA pol I 29.5 3.2E+02 0.0069 24.3 7.8 55 52-106 174-230 (475)
349 KOG0979|consensus 29.5 4.7E+02 0.01 26.3 9.3 55 48-102 248-302 (1072)
350 KOG1962|consensus 29.2 2.5E+02 0.0055 22.9 6.6 51 44-94 161-211 (216)
351 KOG4403|consensus 29.2 4.6E+02 0.0099 24.2 10.1 38 43-80 237-274 (575)
352 PF04012 PspA_IM30: PspA/IM30 29.2 2.7E+02 0.0059 21.5 10.6 17 36-52 4-20 (221)
353 cd07666 BAR_SNX7 The Bin/Amphi 29.2 3.2E+02 0.007 22.4 9.7 24 82-105 176-199 (243)
354 PF04568 IATP: Mitochondrial A 29.1 2.2E+02 0.0048 20.4 7.3 26 44-69 58-83 (100)
355 cd00179 SynN Syntaxin N-termin 29.1 2.2E+02 0.0047 20.4 9.9 64 44-107 9-72 (151)
356 PF02609 Exonuc_VII_S: Exonucl 29.1 1.4E+02 0.003 18.4 4.1 27 73-99 7-33 (53)
357 PRK05183 hscA chaperone protei 28.8 4.6E+02 0.0099 24.0 10.8 84 24-109 503-595 (616)
358 PRK14149 heat shock protein Gr 28.6 3E+02 0.0066 21.9 8.1 39 91-131 88-126 (191)
359 PF05667 DUF812: Protein of un 28.5 4.9E+02 0.011 24.2 10.4 56 55-110 426-481 (594)
360 KOG0980|consensus 28.5 6E+02 0.013 25.3 10.2 43 62-104 459-501 (980)
361 PRK12705 hypothetical protein; 28.4 4.6E+02 0.01 23.9 13.2 41 64-104 83-123 (508)
362 TIGR03495 phage_LysB phage lys 28.4 2.6E+02 0.0057 21.1 11.2 57 50-106 42-98 (135)
363 cd00632 Prefoldin_beta Prefold 28.4 2.1E+02 0.0045 19.9 9.6 37 74-110 61-97 (105)
364 PRK14160 heat shock protein Gr 28.2 3.2E+02 0.007 22.1 10.7 63 65-132 82-149 (211)
365 PF04375 HemX: HemX; InterPro 28.1 3.8E+02 0.0083 22.9 9.9 33 80-112 90-122 (372)
366 KOG0612|consensus 27.8 6.9E+02 0.015 25.8 10.9 22 48-69 465-486 (1317)
367 COG0172 SerS Seryl-tRNA synthe 27.8 4.5E+02 0.0097 23.6 10.1 63 47-109 35-105 (429)
368 cd04779 HTH_MerR-like_sg4 Heli 27.7 2.5E+02 0.0055 20.7 7.1 31 74-104 79-109 (134)
369 cd00584 Prefoldin_alpha Prefol 27.7 2.2E+02 0.0049 20.1 10.2 32 74-105 92-123 (129)
370 PF06785 UPF0242: Uncharacteri 27.6 4.4E+02 0.0095 23.4 11.6 62 48-109 120-181 (401)
371 KOG3850|consensus 27.5 4.6E+02 0.01 23.7 12.6 76 35-110 38-118 (455)
372 smart00150 SPEC Spectrin repea 27.4 1.7E+02 0.0036 18.5 8.5 55 44-98 41-96 (101)
373 PRK04406 hypothetical protein; 27.4 2E+02 0.0043 19.4 9.3 35 76-110 25-59 (75)
374 PF12999 PRKCSH-like: Glucosid 27.2 3.1E+02 0.0068 21.6 8.4 35 68-102 138-172 (176)
375 PF09755 DUF2046: Uncharacteri 27.0 4.1E+02 0.0089 22.9 10.4 9 113-121 207-215 (310)
376 KOG0612|consensus 26.9 6.5E+02 0.014 26.0 9.9 18 71-88 699-716 (1317)
377 PF08286 Spc24: Spc24 subunit 26.9 18 0.00039 26.0 -0.3 36 75-110 5-40 (118)
378 PF12022 DUF3510: Domain of un 26.7 2.3E+02 0.005 20.5 5.5 18 5-22 21-38 (125)
379 PRK13902 alaS alanyl-tRNA synt 26.6 4.3E+02 0.0093 25.8 8.6 46 57-102 742-787 (900)
380 cd00446 GrpE GrpE is the adeni 26.6 2.5E+02 0.0055 20.3 6.2 17 93-109 66-82 (137)
381 TIGR02231 conserved hypothetic 26.5 4.6E+02 0.0099 23.2 11.0 40 72-111 127-166 (525)
382 PF13815 Dzip-like_N: Iguana/D 26.5 2.4E+02 0.0053 20.1 9.1 42 68-109 72-113 (118)
383 KOG4674|consensus 26.4 5.6E+02 0.012 27.4 9.7 49 59-107 112-160 (1822)
384 COG1730 GIM5 Predicted prefold 26.4 2.9E+02 0.0064 21.0 7.7 47 53-99 92-138 (145)
385 PLN02320 seryl-tRNA synthetase 26.2 5.1E+02 0.011 23.7 10.2 20 48-67 100-119 (502)
386 PF05597 Phasin: Poly(hydroxya 26.2 2.8E+02 0.0061 20.7 8.5 24 89-112 108-131 (132)
387 TIGR01462 greA transcription e 26.2 2.8E+02 0.006 20.6 6.6 23 89-111 48-70 (151)
388 PF04201 TPD52: Tumour protein 26.1 2.6E+02 0.0056 21.9 5.9 22 43-64 31-52 (162)
389 PLN02678 seryl-tRNA synthetase 26.0 4.8E+02 0.01 23.3 9.5 66 49-114 41-110 (448)
390 PF12072 DUF3552: Domain of un 25.9 3.2E+02 0.0069 21.3 12.8 11 88-98 122-132 (201)
391 KOG0993|consensus 25.9 3.5E+02 0.0077 24.7 7.4 31 80-110 152-182 (542)
392 PRK04325 hypothetical protein; 25.8 2.1E+02 0.0046 19.1 8.4 30 73-102 27-56 (74)
393 cd04770 HTH_HMRTR Helix-Turn-H 25.8 2.4E+02 0.0052 19.8 7.2 42 70-111 73-114 (123)
394 PF04201 TPD52: Tumour protein 25.7 3.3E+02 0.0071 21.3 7.1 21 48-68 43-63 (162)
395 PRK01156 chromosome segregatio 25.7 5.7E+02 0.012 24.1 10.6 60 48-108 430-501 (895)
396 cd07652 F-BAR_Rgd1 The F-BAR ( 25.6 3.5E+02 0.0076 21.6 8.1 29 65-93 100-128 (234)
397 PRK14144 heat shock protein Gr 25.6 3.5E+02 0.0077 21.7 7.7 43 87-132 93-135 (199)
398 PF11285 DUF3086: Protein of u 25.3 2.1E+02 0.0045 24.4 5.5 14 97-110 58-71 (283)
399 PRK00409 recombination and DNA 25.3 6E+02 0.013 24.2 11.4 66 46-111 525-595 (782)
400 KOG1760|consensus 24.8 3E+02 0.0064 20.9 5.8 31 79-109 84-114 (131)
401 cd07623 BAR_SNX1_2 The Bin/Amp 24.8 3.5E+02 0.0076 21.3 12.9 35 33-67 106-142 (224)
402 PF15497 SNAPc19: snRNA-activa 24.8 2.4E+02 0.0052 19.9 5.1 34 60-93 2-35 (91)
403 TIGR00219 mreC rod shape-deter 24.7 2.9E+02 0.0063 22.9 6.4 16 52-67 70-85 (283)
404 TIGR03683 A-tRNA_syn_arch alan 24.4 5.2E+02 0.011 25.3 8.7 47 57-103 746-792 (902)
405 PRK06800 fliH flagellar assemb 24.3 4E+02 0.0086 21.8 8.6 10 20-29 10-19 (228)
406 cd04776 HTH_GnyR Helix-Turn-He 24.3 2.7E+02 0.0058 19.8 6.8 37 73-109 77-113 (118)
407 COG3096 MukB Uncharacterized p 24.3 7.4E+02 0.016 24.9 10.7 58 27-86 986-1043(1480)
408 PF06937 EURL: EURL protein; 24.1 4.6E+02 0.0099 22.4 8.1 53 57-109 221-273 (285)
409 PRK04654 sec-independent trans 24.0 4E+02 0.0088 21.8 8.4 14 44-57 37-50 (214)
410 PF07445 priB_priC: Primosomal 23.9 3.4E+02 0.0074 20.9 8.1 33 70-102 139-171 (173)
411 KOG1103|consensus 23.9 2.9E+02 0.0063 24.9 6.4 50 39-88 243-292 (561)
412 cd07664 BAR_SNX2 The Bin/Amphi 23.9 3.9E+02 0.0086 21.6 10.8 36 33-68 116-153 (234)
413 PF03528 Rabaptin: Rabaptin; 23.7 2.9E+02 0.0064 20.1 5.9 11 32-42 27-37 (106)
414 KOG1003|consensus 23.7 4E+02 0.0088 21.7 8.1 65 45-109 113-177 (205)
415 PRK00252 alaS alanyl-tRNA synt 23.7 5.4E+02 0.012 24.9 8.7 46 58-103 701-746 (865)
416 PF05852 DUF848: Gammaherpesvi 23.6 3.4E+02 0.0075 20.8 10.7 24 27-50 6-29 (146)
417 PF09728 Taxilin: Myosin-like 23.6 4.5E+02 0.0097 22.1 10.2 65 47-111 236-307 (309)
418 PF05926 Phage_GPL: Phage head 23.6 3.2E+02 0.0069 20.5 5.9 17 23-39 24-40 (140)
419 KOG0018|consensus 23.6 7.1E+02 0.015 25.3 9.5 60 47-106 408-467 (1141)
420 KOG0289|consensus 23.5 5.8E+02 0.013 23.4 9.7 76 47-123 70-146 (506)
421 PF02646 RmuC: RmuC family; I 23.4 4.3E+02 0.0094 21.9 8.9 7 102-108 78-84 (304)
422 PF07407 Seadorna_VP6: Seadorn 23.4 5E+02 0.011 23.0 7.7 28 52-79 36-63 (420)
423 COG1382 GimC Prefoldin, chaper 23.2 3.2E+02 0.0069 20.3 6.3 36 75-110 69-104 (119)
424 cd07623 BAR_SNX1_2 The Bin/Amp 23.1 3.8E+02 0.0082 21.1 11.0 29 46-74 111-139 (224)
425 PRK10803 tol-pal system protei 22.9 4.2E+02 0.0091 21.6 9.6 16 46-61 59-74 (263)
426 COG3851 UhpB Signal transducti 22.9 5.8E+02 0.013 23.2 8.1 38 43-80 271-308 (497)
427 cd07655 F-BAR_PACSIN The F-BAR 22.9 4.1E+02 0.0089 21.4 9.0 67 26-92 71-146 (258)
428 PRK12495 hypothetical protein; 22.7 1.4E+02 0.003 24.6 4.0 32 40-71 7-38 (226)
429 PF08232 Striatin: Striatin fa 22.7 3.2E+02 0.007 20.2 6.5 28 43-70 27-54 (134)
430 KOG1029|consensus 22.7 4E+02 0.0086 26.4 7.4 65 45-109 434-498 (1118)
431 PRK04778 septation ring format 22.6 5.8E+02 0.013 23.1 11.7 24 95-119 450-473 (569)
432 COG1722 XseB Exonuclease VII s 22.6 2.7E+02 0.0058 19.2 8.6 64 53-116 12-75 (81)
433 PF03915 AIP3: Actin interacti 22.6 2E+02 0.0044 25.6 5.3 35 76-110 199-233 (424)
434 PF09045 L27_2: L27_2; InterP 22.5 25 0.00055 23.2 -0.3 9 125-133 37-45 (58)
435 KOG3119|consensus 22.5 4.4E+02 0.0096 21.7 10.1 58 52-109 198-255 (269)
436 TIGR02420 dksA RNA polymerase- 22.3 2.9E+02 0.0062 19.5 8.8 22 90-111 56-77 (110)
437 PF11887 DUF3407: Protein of u 21.9 1.4E+02 0.0031 24.4 3.9 80 25-109 10-89 (267)
438 PF04880 NUDE_C: NUDE protein, 21.8 2E+02 0.0044 22.4 4.6 19 67-85 29-47 (166)
439 PF08172 CASP_C: CASP C termin 21.8 4.5E+02 0.0098 21.5 9.7 79 10-96 56-134 (248)
440 cd07651 F-BAR_PombeCdc15_like 21.6 4E+02 0.0088 20.9 9.5 24 71-94 102-125 (236)
441 PF12443 AKNA: AT-hook-contain 21.6 52 0.0011 24.1 1.2 45 63-107 32-76 (106)
442 COG2825 HlpA Outer membrane pr 21.6 3.8E+02 0.0083 20.6 9.6 110 17-126 27-155 (170)
443 KOG4674|consensus 21.6 9.2E+02 0.02 25.9 10.1 74 46-119 764-841 (1822)
444 PF04880 NUDE_C: NUDE protein, 21.6 2E+02 0.0044 22.4 4.5 42 57-100 13-54 (166)
445 PRK15361 pathogenicity island 21.5 4.4E+02 0.0095 21.3 7.2 23 5-27 10-32 (195)
446 PF08702 Fib_alpha: Fibrinogen 21.5 3.6E+02 0.0078 20.3 12.1 26 84-109 105-130 (146)
447 cd07596 BAR_SNX The Bin/Amphip 21.5 3.4E+02 0.0075 20.0 10.5 16 52-67 121-136 (218)
448 PF12128 DUF3584: Protein of u 21.3 8.3E+02 0.018 24.4 11.8 12 67-78 272-283 (1201)
449 PF11629 Mst1_SARAH: C termina 21.2 2.3E+02 0.005 18.0 4.0 25 39-63 10-34 (49)
450 PF04912 Dynamitin: Dynamitin 21.2 5.3E+02 0.011 22.1 9.2 54 55-111 329-382 (388)
451 PRK14139 heat shock protein Gr 21.2 4.2E+02 0.0091 20.9 8.4 13 119-131 108-120 (185)
452 COG3206 GumC Uncharacterized p 21.1 5.5E+02 0.012 22.2 8.7 51 59-109 314-368 (458)
453 PF03234 CDC37_N: Cdc37 N term 21.1 4.1E+02 0.009 20.8 6.6 46 70-115 33-78 (177)
454 cd07675 F-BAR_FNBP1L The F-BAR 21.0 4.8E+02 0.01 21.5 11.0 63 36-98 83-146 (252)
455 KOG0241|consensus 21.0 8.4E+02 0.018 25.2 9.3 67 41-109 364-430 (1714)
456 KOG0249|consensus 20.8 8.1E+02 0.018 24.1 9.3 67 44-111 166-251 (916)
457 PF04871 Uso1_p115_C: Uso1 / p 20.6 3.6E+02 0.0079 20.0 9.8 55 56-110 56-111 (136)
458 KOG2077|consensus 20.6 3.7E+02 0.0081 25.7 6.7 55 56-110 309-363 (832)
459 PF15294 Leu_zip: Leucine zipp 20.5 5.3E+02 0.011 21.8 7.4 74 35-110 83-173 (278)
460 PRK06328 type III secretion sy 20.4 4.5E+02 0.0097 21.0 9.4 69 19-87 13-85 (223)
461 PF02403 Seryl_tRNA_N: Seryl-t 20.3 3E+02 0.0064 18.9 9.5 54 56-109 37-93 (108)
462 PF14193 DUF4315: Domain of un 20.2 3.1E+02 0.0067 19.0 5.7 23 87-109 38-60 (83)
463 KOG3088|consensus 20.1 2.1E+02 0.0046 24.7 4.7 15 59-73 61-75 (313)
464 TIGR00414 serS seryl-tRNA synt 20.0 5.9E+02 0.013 22.2 9.7 32 78-109 71-102 (418)
No 1
>KOG2391|consensus
Probab=99.88 E-value=3.7e-22 Score=168.38 Aligned_cols=108 Identities=40% Similarity=0.535 Sum_probs=102.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 23 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 23 gti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+-+..-.||+|+++||.+|||+|++++++++++++++|+++.++|+.|+++|+.|..+||++...+++||++|+.|++|
T Consensus 200 n~~~~~~irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e- 278 (365)
T KOG2391|consen 200 NASGKLVIRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE- 278 (365)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-
Confidence 3444445999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCccccccCchhhhhhcC
Q psy4582 103 DEILAVLTEKTEVDVDEAVTTTAPIYKQIVN 133 (133)
Q Consensus 103 e~~l~~l~~~~~~dVDeaV~~tapLy~QLl~ 133 (133)
+++++++.+.+||||+|.+++|||+|||+
T Consensus 279 --al~~~~n~~~~~~D~~~~~~~~l~kq~l~ 307 (365)
T KOG2391|consen 279 --ALEKAENLEALDIDEAIECTAPLYKQILE 307 (365)
T ss_pred --HHhhhccCcCCCchhhhhccchHHHHHHH
Confidence 99999999999999999999999999985
No 2
>KOG2391|consensus
Probab=97.36 E-value=0.002 Score=55.45 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
...++...+.||+++.+.|++|++.++.|..+..+|++++..|+.....|+...+-|.+|+++.-
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999863
No 3
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.67 E-value=0.3 Score=35.82 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
..++..+..++-+++..+.-+.+|..-...|+..+..|+++.+...+.|..|+.++.++-+.++.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999888765
No 4
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.82 E-value=1.4 Score=29.93 Aligned_cols=66 Identities=27% Similarity=0.287 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 35 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 35 lsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
++.++.|+.. +-+.+..++-|++.|+.-...|......|.....+|..++..+...+..+-+|.++
T Consensus 6 l~~LE~ki~~-aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 6 LEQLEEKIQQ-AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334444322 33566788899999999999999999999999999999999999999998888764
No 5
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=92.75 E-value=2 Score=29.05 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+...-+.|+.|+.-.+.|..-+-+....|..|.+....++..+..++.+.++.+.-++.+.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777777777777888888888888888888888888888888888887774
No 6
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.58 E-value=9.2 Score=31.97 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
.+++++...++|-+.|..--.+|..--..+++.+.+|+.|...|+.....+-.+...|....+.|...
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 46677777888888777777777777777777788888888888888888888888888888887644
No 7
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.45 E-value=5.5 Score=29.23 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK-------AELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~-------~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+......++.|..+..++..-+..|...=.+.+.-+ ..+...-..|...+.++++.+.+|
T Consensus 51 l~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 51 LVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444444433333333 333344444444444444444444
No 8
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.07 E-value=8 Score=33.88 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHHHHHHH
Q psy4582 26 TDEHIKMSLKSAVEDKIR---------RKMNEQKVQAQEEIEILKQTENELNQGK--------------FKLARMFERID 82 (133)
Q Consensus 26 ~ee~ir~SLlsAV~dKLr---------~rL~e~~~~~~aEle~L~~tq~eL~~G~--------------~kL~~~i~rLe 82 (133)
-|.++|...-.-++.|+| +++.+-+...+.|++.|+...+.|+.-- ++++..+++++
T Consensus 61 re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~ 140 (401)
T PF06785_consen 61 REKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLR 140 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 366778777777777777 3577888899999999998877776544 44555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 83 KEKAELERSISFLKEKETELD 103 (133)
Q Consensus 83 ~e~~~le~~i~~l~~k~~Ele 103 (133)
.|...++-.++.+...-.|.+
T Consensus 141 EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhH
Confidence 555555555554444443333
No 9
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.52 E-value=7.7 Score=29.51 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
......+++++|..-=..+...-..|...+.-+..++..+.+.++.++.++.+|+.....+
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3446778888888888888888889999999999999999999999999999998877665
No 10
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.47 E-value=6.9 Score=36.06 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL----------ARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL----------~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
+..++...++........+.+..++..+.|...-.++ +..+.+|+++.+..++.-..+-.+.++..-..
T Consensus 328 l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~- 406 (754)
T TIGR01005 328 LDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ- 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4444444444444555555555555554444444433 66677888888888888888888888875333
Q ss_pred HhcCCCCCCCccccccCchhh
Q psy4582 108 VLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 108 ~l~~~~~~dVDeaV~~tapLy 128 (133)
.......-=||.|+.|..|.+
T Consensus 407 ~~~~~~~~vi~~A~~P~~P~~ 427 (754)
T TIGR01005 407 NYVPVDARVASPASVPSEPYF 427 (754)
T ss_pred cCCCCCcEEeccCcCCCCCCC
Confidence 222233334688888888764
No 11
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=89.37 E-value=8.5 Score=33.02 Aligned_cols=63 Identities=13% Similarity=0.346 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.|.+.......-+..|..+|.++...-.+.+..|..++.- +..|...+..++..|++.|.+|.
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 4555566777777788888888888777777777777665 88899999999999999988763
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.23 E-value=5.8 Score=27.68 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQ-------TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 52 ~~~aEle~L~~-------tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
-++-|++.|+. --+.++.|...|...-.+|+.+...++..+..|-.|.++
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555554 445556678889999999999999999999988887654
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.17 E-value=8.2 Score=30.90 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+|..--...+..+.+|+.+.+.+.+.+..++.+.+.++..+..+.
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445666777888888888888888888887777776664
No 14
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=88.33 E-value=13 Score=30.58 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 90 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~ 90 (133)
.+-+..|+.+|-+.+.+..+..-+++..+..++.+|...-..+...-+.|...++.+-.
T Consensus 41 s~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 41 SHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 36788899999999999999999999999999999999999999999999999988655
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.44 E-value=5 Score=30.34 Aligned_cols=62 Identities=27% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK--AELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~--~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
+..+..++..|+..=.+|...-..++..++.|...- .++...+..|+....+++..+..+++
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444555444443 45566666666666666677766654
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.56 E-value=17 Score=30.54 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+.+++.+...++..++.+..+..++...|+.++
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666654
No 17
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.46 E-value=17 Score=31.00 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 37 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKF----------KLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 37 AV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~----------kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
++...|...++........+.+.+++...+|...-. +....+.+|+++.+..++.-..|-.+.++..-.
T Consensus 293 ~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~- 371 (444)
T TIGR03017 293 SLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE- 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344444444444444445454454444444433322 233456677777777777777777777776421
Q ss_pred HHhcCCCCCCCccccccCchhh
Q psy4582 107 AVLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 107 ~~l~~~~~~dVDeaV~~tapLy 128 (133)
.......--=||.|+.|..|.+
T Consensus 372 ~~~~~~~~~Vi~~a~~P~~P~~ 393 (444)
T TIGR03017 372 AQSNQTDISILNPAVPPLEPSS 393 (444)
T ss_pred hccCCCceEeeCCCCCCCCCCC
Confidence 1222233334577888877765
No 18
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=86.16 E-value=16 Score=29.36 Aligned_cols=76 Identities=9% Similarity=0.182 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
..-.+..+++...-....+.++++++.-+..+..-...+....++..-|+.++......+..++..+..|++....
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345566777777778889999999999999999999999999999999999999999999999999999877643
No 19
>PRK11637 AmiB activator; Provisional
Probab=85.71 E-value=17 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
+.+|+.+....+..+..|+...+.+.+.|..
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 20
>KOG0447|consensus
Probab=85.57 E-value=7.6 Score=36.64 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE 89 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le 89 (133)
.+-+-.+-++|+++++.+.-.- |........-+.+.++|+|+...+-+-++++++|+.|..+|.
T Consensus 201 ~~k~~~~~A~L~~~~~~~~ts~--E~~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr 264 (980)
T KOG0447|consen 201 HFRKGLLGALLLLQIQEESTSY--EQQKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR 264 (980)
T ss_pred chhhhhHHHHHHHHHhhccCCH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455556678888888775433 223333444566778899999999999999999999999998
No 21
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.50 E-value=8.5 Score=34.26 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEK 85 (133)
Q Consensus 72 ~kL~~~i~rLe~e~ 85 (133)
.+|+++|.+++.+.
T Consensus 62 ~kL~~~lk~~e~~i 75 (420)
T COG4942 62 AKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 22
>KOG2264|consensus
Probab=85.38 E-value=11 Score=35.40 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 117 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dV 117 (133)
-+.++...++-..|+-.|..-.++|++-=.+|..-|++|+++.-.-+..+..|+..++..+...+++.....|++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 455666777888888888888888888888888888888888888888888999999999999988866655543
No 23
>PRK11637 AmiB activator; Provisional
Probab=85.18 E-value=17 Score=31.42 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 75 ARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l 95 (133)
...+.+|+++...++..|..+
T Consensus 232 ~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 232 QQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.02 E-value=13 Score=27.43 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 51 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 51 ~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..+..|+-.|....+++......+...-.+++.-....++..+.|=.|.++.++.
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3444444444455555555555555555555555555555555555555544443
No 25
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.61 E-value=14 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMN--EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~--e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
..+++.|++-|.++-+ +....+...+.++.....-|..--.++++-++.++++....+.....+..+...
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888776633 223333334444444444444444444444444444444444443333333333
No 26
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.36 E-value=7 Score=36.66 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQG-------KFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G-------~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
||...+..+.+|+.+.|+.++||+.- +..++.+|..|+.+.+.++..+..|...
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a 482 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA 482 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888888888765 7788888888888888888776665443
No 27
>PRK14161 heat shock protein GrpE; Provisional
Probab=83.72 E-value=14 Score=28.99 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE-----LERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~-----le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
+..+.-.-..+.+..++.+++.+ .+.+.+-...++..-+|+++++.. .++-+..|-.-.+.+++++......
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~el---kd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~ 92 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEEL---KDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN 92 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc
Confidence 33333333334444444444433 233444444455555555555444 3444556666777777777654433
Q ss_pred CCCCCccccccCchhhhhhc
Q psy4582 113 TEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 113 ~~~dVDeaV~~tapLy~QLl 132 (133)
.+..+...+.+-..+|+||+
T Consensus 93 ~~~~~~~~~~Gv~mi~k~l~ 112 (178)
T PRK14161 93 SDVEVTNIIAGVQMTKDELD 112 (178)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 33334455666666677664
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.44 E-value=13 Score=33.62 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKT 113 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~ 113 (133)
.+..+.+++.+...-+++...+.+|.+.+..|......+...+..++.+..++.+.+.+..-.+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg 441 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG 441 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567788889999999999999999999999999999999999999999999998887764443
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.88 E-value=9.6 Score=31.99 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSIS 93 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~ 93 (133)
...++++..++.-.+|..-...++..++.+..++..|...|.
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333433344444444444444444443333
No 30
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.70 E-value=23 Score=28.41 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
-..++.+....+.+++..|.+.-+-|..-..+++..+..++.+.+.++..+..+..-..++.-.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666677777777777777777777777666655555543
No 31
>KOG2991|consensus
Probab=82.54 E-value=9.7 Score=32.40 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+..+.+|++--+...++|++.+.-|.+-|.+|..........|-+|+.+..+-...|..+
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRL 297 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4557888999899999999999999999999999999999999998888888877666555
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.37 E-value=18 Score=27.01 Aligned_cols=58 Identities=5% Similarity=0.157 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+...++.+-...++-..-...+++.+..+...-......++.++..+.-|+..|..+
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444443
No 33
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.24 E-value=18 Score=32.72 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLA--------RMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~--------~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.++..+..+..+.+.|+.-.+.|++.+..|+ ..-.+++.++..+....+.++.....|.+.+..+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555556666666666655544443 3334555666666666666666666666666544
No 34
>KOG4657|consensus
Probab=82.15 E-value=21 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+..|++.+.-++++-+++..|++.++.+.....+.|+.-
T Consensus 85 ~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 85 EARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345567778888888888888888888887777766666544
No 35
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.93 E-value=19 Score=31.25 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCC
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGK----------FKLARMFERIDKEKAELERSISFLKEKETELDEI--LAVLTEKT 113 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~----------~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~--l~~l~~~~ 113 (133)
|...+....++++.++...+.|..-- +..+..+.+|+++.+..++.-..+..+.++..-. +..-.+..
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~ 394 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAV 394 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCc
Confidence 33444555555655555444444433 3344566677888888888777777777775432 21111222
Q ss_pred CCC-CccccccCchhh
Q psy4582 114 EVD-VDEAVTTTAPIY 128 (133)
Q Consensus 114 ~~d-VDeaV~~tapLy 128 (133)
.+- ||.|..|+.|.+
T Consensus 395 ~i~vi~~A~~P~~P~~ 410 (498)
T TIGR03007 395 SFRIIDPPIVPSKPSG 410 (498)
T ss_pred eEEEeCCCCCCCCCCC
Confidence 222 477888888765
No 36
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.72 E-value=25 Score=28.18 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.+..++.+.....+|..--..+...+..|+...+.++..+...+.+..++++-++.+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444
No 37
>KOG3684|consensus
Probab=81.56 E-value=22 Score=32.20 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=50.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 33 SLKSAVED--KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 33 SLlsAV~d--KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
-++-|++. ++|.+.+.++++ ...+-.+.++ +.-.-|.+.+|-+.++.++..|..|+.|.+.+.+.+..+.
T Consensus 397 kfL~AI~~fR~Vk~~qRkl~e~-~nsl~d~aK~-------~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~ 468 (489)
T KOG3684|consen 397 KFLQAIHQFRSVKWEQRKLSEQ-ANSLVDLAKT-------QNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLP 468 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34455554 344444444444 3334444444 4456789999999999999999999999999999998875
Q ss_pred C
Q psy4582 111 E 111 (133)
Q Consensus 111 ~ 111 (133)
+
T Consensus 469 ~ 469 (489)
T KOG3684|consen 469 G 469 (489)
T ss_pred h
Confidence 3
No 38
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.37 E-value=18 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
-+..|+...+.+..++..+++..+++...+.
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 39
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.35 E-value=25 Score=27.82 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..|.+|+...-+++.....+..+.++.++-|+.+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRL 164 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444443
No 40
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=80.95 E-value=37 Score=29.52 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLAR----------MFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~----------~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+-+.++...+...++........+.+.+++..+.|......++. .+++|+++-...++..+.|-.+.+++
T Consensus 320 ~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 320 AQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888888888888888777777777666654 56788888888888888888888888
Q ss_pred HHHHHHhcCCCCCCCccccccCchhhhh
Q psy4582 103 DEILAVLTEKTEVDVDEAVTTTAPIYKQ 130 (133)
Q Consensus 103 e~~l~~l~~~~~~dVDeaV~~tapLy~Q 130 (133)
.... .......==||.|+.|..|.+-.
T Consensus 400 ~~~~-~~~~~n~rvIs~A~~P~~p~~Pk 426 (458)
T COG3206 400 SIQE-ASPIGNARVISPAVPPLSPSKPK 426 (458)
T ss_pred HHhh-cCCCCceeEeccccCCCCCCCCh
Confidence 7665 22222233367888888887654
No 41
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.86 E-value=43 Score=29.67 Aligned_cols=46 Identities=28% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
+.+--..+...+.++......++..+..++++.+++++.+..+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3333444555667777777788888888888888888888877653
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.86 E-value=36 Score=28.83 Aligned_cols=71 Identities=31% Similarity=0.433 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENE---------------LNQGKFKL---ARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~e---------------L~~G~~kL---~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.+...+.+..+....|+..|++..++ |..-...| ...+.+++.+...+...|+....+.+++
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555544443 22222222 3345556666666677777777777777
Q ss_pred HHHHHHhcC
Q psy4582 103 DEILAVLTE 111 (133)
Q Consensus 103 e~~l~~l~~ 111 (133)
...|.++++
T Consensus 252 ~~~I~~ae~ 260 (312)
T smart00787 252 NTEIAEAEK 260 (312)
T ss_pred HHHHHHHHH
Confidence 777777654
No 43
>KOG0995|consensus
Probab=79.79 E-value=35 Score=31.63 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.+..-.+.....|++|..|....+..++.++....+|...|
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555544
No 44
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=79.52 E-value=22 Score=32.73 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy4582 27 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 85 (133)
Q Consensus 27 ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~ 85 (133)
.+.+|.+..+ -+..=|.+.++..=.+++.|+...+.+.+.-..++..+.+...+.
T Consensus 353 ~~~~r~~v~n----sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 353 QQAFRDSVSN----SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445655444 444556666666667889999999999888888888888887773
No 45
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.46 E-value=24 Score=28.34 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
|+......+.+-.+|...-..|.++.+.|...|..|+.+...+....+.++.+..+|-
T Consensus 72 Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 72 LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3344444444444444455555555555555555555555555555555555555553
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.65 E-value=49 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCCCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 16 GSSPSQGGTITDEHIKMSLKSAV-EDKIRRKMNEQKVQAQEEIEILK 61 (133)
Q Consensus 16 ~~~~~~~gti~ee~ir~SLlsAV-~dKLr~rL~e~~~~~~aEle~L~ 61 (133)
|-+|+..--+.+++...+.++++ ...|...+.+.+..+.+.+..|.
T Consensus 128 g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 128 GRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred cCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34454454555666555554443 33444444444443333333333
No 47
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.37 E-value=18 Score=24.38 Aligned_cols=62 Identities=31% Similarity=0.329 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
.+.+.++..|-+.|-..+-.+..-=-+|+.-+.+++.....+...+.......+.+...+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57888999999999999999999999999999999999999999999999998888877653
No 48
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.28 E-value=29 Score=26.84 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.-+++.||...-.|- .++-.+..+..+-..|+...++|......+.+++.+-+.--..+.-.+.-|......+.
T Consensus 73 ~ysE~dik~AYe~A~------~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 73 RYSEEDIKEAYEEAH------ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred ccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345666666655542 35566667788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q psy4582 104 EILAVLTEKT 113 (133)
Q Consensus 104 ~~l~~l~~~~ 113 (133)
..++++..+.
T Consensus 147 ~~~e~~~~~q 156 (159)
T PF05384_consen 147 EQIEDAQQKQ 156 (159)
T ss_pred HHHHHHHHhh
Confidence 9999886554
No 49
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.14 E-value=36 Score=27.76 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+=++.|+...+|... |+++|...+.++......+.++.+....|...+..+
T Consensus 47 Er~~h~eeLrqI~~DIn~----lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINT----LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555665544 788888888888888888888777766666666665
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.08 E-value=34 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=9.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
|+.-..+|+..+..++.+.+.++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 51
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.53 E-value=43 Score=28.38 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
....++...+..-+++..--..++..|+.....+.+|...|...+.
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444333
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.42 E-value=34 Score=31.48 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
+..+++++...+.....|......+......|..+++.+......+..++.+++.
T Consensus 173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333343333333333333333333333333333333333333
No 53
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.38 E-value=44 Score=28.39 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 28 EHIKMSLKSAVEDKIRRKMN------EQKVQAQEEIEILKQTENELNQGKF-------KLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 28 e~ir~SLlsAV~dKLr~rL~------e~~~~~~aEle~L~~tq~eL~~G~~-------kL~~~i~rLe~e~~~le~~i~~ 94 (133)
..+|.+|.. |++|.|.-|- .....+.-+++.|+..=.+|..--. .-...+.++....+.+......
T Consensus 80 r~lk~~l~e-vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 80 RDLKDSLAE-VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766 9999988754 3334444445444433333222222 2223356666666777777777
Q ss_pred HHHHHHHHHHHHHHh
Q psy4582 95 LKEKETELDEILAVL 109 (133)
Q Consensus 95 l~~k~~Ele~~l~~l 109 (133)
|+..+.+.+..|.+-
T Consensus 159 Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 159 LREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777777777664
No 54
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.10 E-value=28 Score=26.03 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
++|-.+-+.+=.+..++..+|..++.++.+-+..++.+-..|+.-++.|......++.....+...+..
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 344444445555677888888888888877776666666666665555555555555555554444433
No 55
>PRK00106 hypothetical protein; Provisional
Probab=76.25 E-value=63 Score=29.60 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
++.|...+..|++-..+|+.....++..-..+..+.++++
T Consensus 103 E~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLe 142 (535)
T PRK00106 103 ESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHID 142 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333333333
No 56
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=75.62 E-value=20 Score=33.61 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGK----FKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~----~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
||.+|..+-++.+.|...++...++|+..+ .+|+..+.+||+|+.=+......+..+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~ 64 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKR 64 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 788899999999999999999999999876 46888888888888888877766655443
No 57
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=75.49 E-value=38 Score=26.72 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 85 KAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 85 ~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
+..+++-+.-|--..+.+++++.......++. -..+.+-.-+|+||+
T Consensus 82 k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~-~~l~~Gvem~~~~l~ 128 (193)
T COG0576 82 KYAIEKFAKDLLPVIDNLERALEAAEDDKDPE-KALLEGVEMTLDQLL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHH
Confidence 34455556666667777777776665443333 235555555666654
No 58
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.41 E-value=32 Score=30.01 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQG------KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 117 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G------~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dV 117 (133)
.+|.+.+..+..+++.+++.-..|... .++....+.++......+...+..|+.+..++.+.+........+.|
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~I~v 416 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERSYKEARIKV 416 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceEEEE
Confidence 444555555566666666554444442 35677888999999999999999999999999999988832334554
Q ss_pred cccc
Q psy4582 118 DEAV 121 (133)
Q Consensus 118 DeaV 121 (133)
-+.|
T Consensus 417 ~~~v 420 (451)
T PF03961_consen 417 RKRV 420 (451)
T ss_pred CCEE
Confidence 4433
No 59
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=75.24 E-value=23 Score=23.98 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=43.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.+.+....-..+..|+....++.+.|...+..|...+..|.+.++.|.
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5567777888889999999999999999999999999999999998875
No 60
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.96 E-value=20 Score=34.20 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
+...-+.||.+|++.+...+..|+.+.++++..++.
T Consensus 111 ~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~ 146 (775)
T PF10174_consen 111 KAQEQFERLQAERERLQRELERLRKTLEELQLRIET 146 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666655555555443
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.61 E-value=57 Score=28.56 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
+......|+..+.+|+.+...++..+..+..+..++...++
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~ 396 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333
No 62
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=73.46 E-value=47 Score=26.81 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA------------------ELERSISFLKEKETEL 102 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~------------------~le~~i~~l~~k~~El 102 (133)
.|-+.+...++..-.|+..|+...+.|..-.+.|.+..--|...+. ++.+.+..|..|..+|
T Consensus 41 ~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 41 RLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777777777777777777777666555554332 4555566666666666
Q ss_pred HHHHHHh
Q psy4582 103 DEILAVL 109 (133)
Q Consensus 103 e~~l~~l 109 (133)
+...+.|
T Consensus 121 E~kq~~L 127 (195)
T PF10226_consen 121 EDKQEEL 127 (195)
T ss_pred HHHHHHH
Confidence 5444433
No 63
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.38 E-value=42 Score=26.27 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|...+...|..|+.+...++..+..++.+.+.+++.....
T Consensus 120 ~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 120 QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888887777777766543
No 64
>KOG0994|consensus
Probab=72.78 E-value=27 Score=35.48 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
.++||.+-+.++.+.++-++.|+.++-+...++.+|++.-++|-.-..+++....-++.++
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 4567777777888888888888888888888888877776666666665555555444443
No 65
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=72.63 E-value=47 Score=26.45 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=10.9
Q ss_pred hccccccCCCCCCCC
Q psy4582 5 LTRWTLDQEVGGSSP 19 (133)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (133)
++|+.+|.|+++...
T Consensus 83 ~sRY~l~~p~~~~~~ 97 (221)
T PF05700_consen 83 MSRYELPPPPSGKSN 97 (221)
T ss_pred HHhcCCCCCCCCCcc
Confidence 578888887776554
No 66
>PRK12704 phosphodiesterase; Provisional
Probab=71.79 E-value=78 Score=28.66 Aligned_cols=39 Identities=36% Similarity=0.455 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
++.|...+..|++....|+.....++..-..|..+.+++
T Consensus 88 E~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eL 126 (520)
T PRK12704 88 EKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333333333
No 67
>KOG4673|consensus
Probab=71.73 E-value=36 Score=32.72 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=8.9
Q ss_pred ccccCchhhhhh
Q psy4582 120 AVTTTAPIYKQI 131 (133)
Q Consensus 120 aV~~tapLy~QL 131 (133)
+=-+|.||-+||
T Consensus 635 v~~TTrPLlRQI 646 (961)
T KOG4673|consen 635 VPETTRPLLRQI 646 (961)
T ss_pred ccccccHHHHHH
Confidence 345788888887
No 68
>KOG4331|consensus
Probab=71.65 E-value=25 Score=33.98 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy4582 28 EHIKMSLKSAVEDKIRRK-------MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID-KEKAELERSISFLKEKE 99 (133)
Q Consensus 28 e~ir~SLlsAV~dKLr~r-------L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe-~e~~~le~~i~~l~~k~ 99 (133)
.+++.++..++++.++.- ..+...+++.-++++..+...|+.=..+++++..+|+ +.++.+.+-++.-..-+
T Consensus 229 n~i~~~i~~~l~~~s~s~vi~~l~~v~~~~~el~~~~~ave~m~~~L~~~~s~~~~~~~~lr~~~~~sL~~llq~~~c~~ 308 (865)
T KOG4331|consen 229 NEIGMLIGGCLHDDSESNVIPVLDYVLSAAQELREMSEAVENMNDTLDSLGSQLNDGASKLRERVNASLKVLLQVVLCQK 308 (865)
T ss_pred hcccchhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHhHHhHH
Confidence 345556666666665543 3344555666666666777777777777777777777 66666665555544444
Q ss_pred HHHHHHHHHhcCC-CCCCCccccccCchh
Q psy4582 100 TELDEILAVLTEK-TEVDVDEAVTTTAPI 127 (133)
Q Consensus 100 ~Ele~~l~~l~~~-~~~dVDeaV~~tapL 127 (133)
..+..+++.+++. -.+++|+..-+++.+
T Consensus 309 ~~ca~~~~~l~sl~~~~~~~qlp~vd~~~ 337 (865)
T KOG4331|consen 309 KDCASAVKTLPSLRSTPFFDQLPNVDAFL 337 (865)
T ss_pred HhhHHHHHhhhhhccChhhhhCCCchHHH
Confidence 5555666555432 223344444443333
No 69
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.55 E-value=72 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILK 61 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~ 61 (133)
..++++.+.| ..+++....++.+++.|+
T Consensus 212 ~~l~~~~~el-~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 212 LGLQKILEEL-REIKESQSRLEESIEKLK 239 (395)
T ss_pred chHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444 333444444444555554
No 70
>KOG0971|consensus
Probab=70.48 E-value=33 Score=33.92 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhc
Q psy4582 96 KEKETELDEILAVLT 110 (133)
Q Consensus 96 ~~k~~Ele~~l~~l~ 110 (133)
.+|+..|++.|.+|+
T Consensus 461 EekVklLeetv~dlE 475 (1243)
T KOG0971|consen 461 EEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.14 E-value=25 Score=28.63 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 82 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe 82 (133)
+.-.++.+..+++.++.-=.+...-...++..+..|.
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444444443333333333333333333333
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.00 E-value=42 Score=24.79 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
++++.+...||+ +.-.+.+++.++.+|.++++ .+.++|-+|-.+.+.+
T Consensus 16 ~~ve~L~s~lr~-~E~E~~~l~~el~~l~~~r~-------~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRR-LEGELASLQEELARLEAERD-------ELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 455555555543 23334445555555555444 4455555555554443
No 73
>PRK10698 phage shock protein PspA; Provisional
Probab=69.82 E-value=56 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..|+.+.+..+..+..|+.....|+..|.++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555544
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.50 E-value=59 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+-.++.+++.++.+...|++++..=+...++|++.+..+.
T Consensus 468 ~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 468 DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777778888888888777777788877777665
No 75
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.27 E-value=53 Score=29.76 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy4582 51 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV 115 (133)
Q Consensus 51 ~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~ 115 (133)
+....+++.+...=.++...+..+.+.+..|..........+..|+.+..++.+.+++..=.|-|
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 46667777777777778888999999999999999999999999999999999999888655543
No 76
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.90 E-value=51 Score=25.51 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCC
Q psy4582 38 VEDKIRRKMNEQ--KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL--TEKT 113 (133)
Q Consensus 38 V~dKLr~rL~e~--~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l--~~~~ 113 (133)
..+.|..-|... -..++..|..|+ ++...-..+|++++..|..-+.+|.+.+..-..+. ... ..+.
T Consensus 10 ~d~~L~~~L~~l~~hq~~~~~I~~L~---~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~-------~~~~~~~~~ 79 (188)
T PF10018_consen 10 ADDELSSALEELQEHQENQARIQQLR---AEIEELDEQIRDILKQLKEARKELRTLPDQADEKL-------KSIPKAEKR 79 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------ccccccccC
Confidence 455555555433 123334444433 33334445777777777777776666662111111 122 2355
Q ss_pred CCCCcccccc
Q psy4582 114 EVDVDEAVTT 123 (133)
Q Consensus 114 ~~dVDeaV~~ 123 (133)
.|++++++-.
T Consensus 80 ~v~~~eLL~Y 89 (188)
T PF10018_consen 80 PVDYEELLSY 89 (188)
T ss_pred CCCHHHHHHH
Confidence 6777776643
No 77
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=68.78 E-value=91 Score=28.20 Aligned_cols=42 Identities=38% Similarity=0.456 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
++.|...+..|++-...|+.....++..-..+..+..++++.
T Consensus 82 E~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~ 123 (514)
T TIGR03319 82 ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEK 123 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 78
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.74 E-value=36 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
.+++......|+..=..|+.+...++..+..|-.|.++
T Consensus 41 ~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 41 VQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455555666666777777777777777777666543
No 79
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.69 E-value=60 Score=26.12 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++.....++.+++.++...=.||.....+++..+.-+......+.+.+..|..++...+.....|
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888888999888999999999999988888888888888877777777776666555
No 80
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=68.50 E-value=78 Score=27.32 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 34 LKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 34 LlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
|+..|..-|..-...+.+|..+=-..|++-=.+....+.+|+..+.+...+...+++++..|+..+.+.+..+
T Consensus 223 LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~l 295 (384)
T PF03148_consen 223 LREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPL 295 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555555555555566666666666777777777777778888887888888888888777777666655544
No 81
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.22 E-value=52 Score=25.22 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
.....+.+.++++|+.+-+..+.+++.|+...+.+.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667788888888888888888888877776654
No 82
>PHA01750 hypothetical protein
Probab=68.20 E-value=36 Score=23.29 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 30 IKMSLKSAVEDKIRRKMNEQK 50 (133)
Q Consensus 30 ir~SLlsAV~dKLr~rL~e~~ 50 (133)
||.++.+||.+.+...|..+.
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~ 48 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLK 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888887766665544
No 83
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.96 E-value=70 Score=29.04 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
..+.+.+.++.+++.|++.-+.+.+-...++..|.+|+.+...|+.++
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666654444444555555666666666666655554
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.53 E-value=52 Score=24.91 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILK 61 (133)
Q Consensus 50 ~~~~~aEle~L~ 61 (133)
.+....++..++
T Consensus 104 ~~~~~~~l~~~~ 115 (191)
T PF04156_consen 104 IQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 85
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.49 E-value=1e+02 Score=29.15 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 37 AVEDKIRRKMNEQKVQA---QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 37 AV~dKLr~rL~e~~~~~---~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
.+.+.+.+|.+.+..+. ..+++.++.....|.....+|.+-+.+....++.|.+.+
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555533333322 233333444444444444444444444444444444333
No 86
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.43 E-value=50 Score=24.69 Aligned_cols=58 Identities=9% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
|...++..-..++....++...+.-=..+.+-+.++..+-+.+...+..|..|+.+++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444333333334455555555556666666666666666666554
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.19 E-value=73 Score=29.40 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+++.|.....++......+..+...|..+.......+..|..
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 88
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=67.06 E-value=32 Score=25.97 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGK-FKLARMFERIDKEK--------AELERSISFLKEKETEL 102 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~-~kL~~~i~rLe~e~--------~~le~~i~~l~~k~~El 102 (133)
+||+..|-++=-.+.+..-.+..+|+.+.++-.+=...|+ .+|...+..|+.+. ..|++....+.+|.+-+
T Consensus 10 pSlIHRig~~~~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li~kie~~L~~~~dkle~l 89 (128)
T PF12614_consen 10 PSLIHRIGREAVKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLIKKIEAALLQHSDKLEPL 89 (128)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchH
Confidence 5888888888777899999999999999999888777776 47888888775543 34555555556666666
Q ss_pred HHHHHHh-cCCCCCCCccc
Q psy4582 103 DEILAVL-TEKTEVDVDEA 120 (133)
Q Consensus 103 e~~l~~l-~~~~~~dVDea 120 (133)
+..+..| .....+.+-|.
T Consensus 90 ~~~L~~Li~~nP~iTlaEL 108 (128)
T PF12614_consen 90 EDKLARLIPQNPNITLAEL 108 (128)
T ss_pred HHHHHHHHHhCCcccHHHH
Confidence 6666555 34444444443
No 89
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=66.99 E-value=77 Score=26.73 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy4582 52 QAQEEIEIL 60 (133)
Q Consensus 52 ~~~aEle~L 60 (133)
....++.+|
T Consensus 10 ~~~~~~r~l 18 (378)
T TIGR01554 10 EIVAEIRSL 18 (378)
T ss_pred HHHHHHHHH
Confidence 333333333
No 90
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=66.73 E-value=50 Score=26.93 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQ-TENELNQGKFK---LARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~-tq~eL~~G~~k---L~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
|+..+--...|+++++. .++||++-++. |.+.++.--+|+|+.+..++.|--
T Consensus 6 LRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 6 LRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456778888764 47788887754 788999999999999999998873
No 91
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.60 E-value=49 Score=24.35 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..+...+....++++.|...-+.|+.--..++..+.-.+.....+...+..+..+......-+.++
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888888888888888888888888888887777777777777777766666666555554
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.39 E-value=92 Score=29.57 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE-----RSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le-----~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+|.+.....+.+.+.+.+...++..-+.+++....+|+.++.... ..-+.++....+++..+.+++
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555544332 112334444444455555553
No 93
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.26 E-value=49 Score=24.16 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
.+++.++..+.++..|+ .+....+..+...-...+.++..+++.+..++.+.++|..
T Consensus 63 ~lr~e~~~~~~~~~~l~---~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 63 QLREELQELQQEINELK---AEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 2222333333333333444444444444444444444443
No 94
>KOG4571|consensus
Probab=65.94 E-value=43 Score=28.57 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
..+-|.|-+...+.+.-|++.|.+...+|+..-..++++|++|++
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666667776666666666666666666666554
No 95
>PRK09039 hypothetical protein; Validated
Probab=65.06 E-value=88 Score=26.68 Aligned_cols=8 Identities=0% Similarity=0.389 Sum_probs=3.7
Q ss_pred cCCCCCCC
Q psy4582 110 TEKTEVDV 117 (133)
Q Consensus 110 ~~~~~~dV 117 (133)
.....+.|
T Consensus 208 ~~~~~iri 215 (343)
T PRK09039 208 GDREGIRI 215 (343)
T ss_pred CCCCCcEE
Confidence 34444444
No 96
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=64.97 E-value=95 Score=28.31 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCccccccCchhhhhh
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE-KTEVDVDEAVTTTAPIYKQI 131 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~-~~~~dVDeaV~~tapLy~QL 131 (133)
+........+|+.+..+.+.....++.....+...++.+.. -=..|.|--|+..+|-+..+
T Consensus 126 ~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il~~~~~~i~~~D~~g~i~~~N~a~~~l 187 (779)
T PRK11091 126 EEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELL 187 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEECCCCcEEeEcHHHHHH
Confidence 33334445555555555555555555555556555555432 11134444455544444433
No 97
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.41 E-value=33 Score=24.28 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
.+.|++-+..++.....|++....++.+..++.+.+..
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555544
No 98
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.33 E-value=30 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.++...+..|++..+.+...+..+....+.+
T Consensus 9 ~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l 39 (129)
T cd00584 9 QVLQQEIEELQQELARLNEAIAEYEQAKETL 39 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333
No 99
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=64.25 E-value=75 Score=25.59 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=21.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 61 KQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 61 ~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...-..|....+.|...+..+..--..+..+-..+..-...+....+.+
T Consensus 177 ~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l 225 (291)
T TIGR00996 177 AQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQL 225 (291)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443333333
No 100
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=64.19 E-value=46 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.-.++|.++-+..+..+..++....|+.
T Consensus 46 ~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 46 ADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333
No 101
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=64.14 E-value=88 Score=26.37 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 31 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 31 r~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.++++.+=.|.+..++..+..++.=-..+...-..|..|+..|..-+..|+........-...|...+.-++..+..+
T Consensus 71 ~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l 149 (333)
T PF05816_consen 71 KKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEEL 149 (333)
T ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777776666655555555555566666666655555555555555544444444444444444444
No 102
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.80 E-value=76 Score=25.54 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
....|++.|+..-..|..+..+|-.--+.+++|...+...++.|......+-.-.+.+.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 34667788888888888888888888888888888888888888888777766666664
No 103
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.77 E-value=1.2e+02 Score=27.61 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+...+.+...+..+..-+..+...-++++.++...+.....+....+.|....+.|
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444455555555555555555555555555554444
No 104
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.76 E-value=43 Score=22.62 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFK---------------LARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~k---------------L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
..+.++..++..+..+-.+|..-.+- ..+.+..|+...+.|+..+..|+.+...+...+.+
T Consensus 19 ~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 19 QQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555665544332 33444444444444444444444444444444443
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.74 E-value=83 Score=25.97 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.++.....|++.|.++..+...+++.+..++.+...++..+...
T Consensus 100 ~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 100 IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555554444444443
No 106
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=63.26 E-value=62 Score=25.51 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRKMNEQKV----QAQEEIEILK-QTENELNQGKFKLARMFERIDKEKAELERSIS---FL 95 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~rL~e~~~----~~~aEle~L~-~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~---~l 95 (133)
.-.|-++|..-.+-..+|||.-..-... |.+.||...+ ++.+.-..-+..|+++|++|+.+.+.+++... .|
T Consensus 70 ~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~L 149 (171)
T PF04799_consen 70 KAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTL 149 (171)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777655432222 4444554433 44455555667777788888877777766554 45
Q ss_pred HHHHHHHHHHHHHh
Q psy4582 96 KEKETELDEILAVL 109 (133)
Q Consensus 96 ~~k~~Ele~~l~~l 109 (133)
+.|-..++..|+..
T Consensus 150 rnKa~~L~~eL~~F 163 (171)
T PF04799_consen 150 RNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665543
No 107
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.19 E-value=60 Score=30.20 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhh
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy 128 (133)
+-+..+..+.+|+++.+.-+..-..|-.+.+|+.-.. .......-=||.|+.+..|..
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~-a~~~~~~rIid~A~~p~~P~~ 421 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISK-SSAIGNVRIIDPAVTQPQPVK 421 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceeeccCCCCCCCCCC
Confidence 3455667788888888888888888888888874332 222222222778888777753
No 108
>PRK00846 hypothetical protein; Provisional
Probab=63.09 E-value=47 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.|++.+.+.+++.+.+...+..|.++..+++
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555554
No 109
>PF15058 Speriolin_N: Speriolin N terminus
Probab=62.63 E-value=31 Score=27.94 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccccccCchhh
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL-TEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l-~~~~~~dVDeaV~~tapLy 128 (133)
+-+..-|+||-+|.++|++.+..++++ .|+++++.+. .+...-.=+++|.+.+|-|
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN-~eLksaL~ea~~~~~~r~~~~vf~pp~pA~ 64 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIREN-HELKSALGEACAEPSQRQGNDVFLPPSPAY 64 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhhcccccccCCceecCCCCCC
Confidence 345667888889999999999888764 5788887666 2232333446777777655
No 110
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=62.59 E-value=73 Score=24.90 Aligned_cols=91 Identities=26% Similarity=0.235 Sum_probs=61.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHH
Q psy4582 20 SQGGTITDEHIKMSLKSAVEDK----------IRRKMNEQKVQAQEEIEILKQTENELNQGK----FKLARMFERIDKEK 85 (133)
Q Consensus 20 ~~~gti~ee~ir~SLlsAV~dK----------Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~----~kL~~~i~rLe~e~ 85 (133)
++...-.++.+-.|.+|+...| +|.+....++..+.+-.+|-.++.+|-.-- ..+.-.-.+.+...
T Consensus 18 ~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vN 97 (159)
T PF04949_consen 18 SSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVN 97 (159)
T ss_pred CcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 3344455566777888877665 556677777888888888888888876432 23333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 86 AELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 86 ~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
-.|.--...++.|..|+..|+....
T Consensus 98 reLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 98 RELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666778888999999988764
No 111
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=62.57 E-value=45 Score=22.47 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
|-+-+.-.+.+..+.+..|+..|.+|..-=.++...+.++..
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566677777777777777666666666666665
No 112
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=62.11 E-value=34 Score=22.79 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhh
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy 128 (133)
..+-+|+++.+.-++.-..|..+.++.+-.- .......-=||.|+.|..|..
T Consensus 4 q~~l~L~R~~~~~~~~Y~~Ll~r~~e~~~~~-~~~~~~~~ivd~A~~P~~P~~ 55 (82)
T PF13807_consen 4 QEYLRLQRDVEIKRELYETLLQRYEEARLSK-ASNVSNVRIVDPAIVPDKPVS 55 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCceeccccccCCCCCC
Confidence 3444888888888888888877777764442 333333334888999988864
No 113
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.09 E-value=69 Score=24.49 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=10.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q psy4582 63 TENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 63 tq~eL~~G~~kL~~~i~rLe~ 83 (133)
++.|+..-+++|++.|.++.+
T Consensus 85 L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444
No 114
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=61.70 E-value=1.3e+02 Score=27.33 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
|.+.+.+...-.+.+++...++......+...+.+++-..+.+-+....|+ .+++..|++.
T Consensus 437 l~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq---~~iE~~ISk~ 497 (507)
T PF05600_consen 437 LVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ---KQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444444444444555555555544444444444444444443333333333 3555566666
No 115
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.59 E-value=1.4e+02 Score=29.51 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
++......+.+.|.+++.++..++..+..+..+..++...+..
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555555555544444444444433
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.36 E-value=75 Score=27.80 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
...+..++.+.+.+......++.....++..+.++.
T Consensus 212 ~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 212 GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666666666666666666666666666664
No 117
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=61.35 E-value=87 Score=25.40 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.++.++.....-...-...+.++.++......+...+..++.+...|++.|..++
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3334443333334444455566666666666666666666666666666666654
No 118
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.24 E-value=1.1e+02 Score=26.52 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
.+..+..-.+.|...+...+.+...+...-..|....++++..-+.+.++
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444444444444444444444444444444443333
No 119
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.65 E-value=70 Score=24.05 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQG--KFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G--~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
..|++.+.....++..|+..=..|.+- -..|...|..|+.+...++..+..|+.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555554444444444332 246777777787777777777777765
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.52 E-value=1e+02 Score=25.91 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..+...+..+.+.++.+..-.+++..-=.+++..|.+|+.+.+.++.+|..-.....+=-|++-..
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346666777777777777777777777777777888888888888777766666555444444333
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.00 E-value=1e+02 Score=25.86 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..+.......+.++++|...=.++..-....+..|.+++.+...+++.|..++..+.+-...+
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888777777888888888888888887777777666655444
No 122
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.99 E-value=94 Score=30.60 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 86 AELERSISFLKEKETELDEIL 106 (133)
Q Consensus 86 ~~le~~i~~l~~k~~Ele~~l 106 (133)
..+...+..++.+..++++.+
T Consensus 873 ~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 873 EELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 123
>KOG0995|consensus
Probab=59.84 E-value=1.5e+02 Score=27.65 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 58 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 58 e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++|+.--..|..-..|.++.+..|+.....+++.+..++...++-++-++.++
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666667777777777777777777777776666666666664
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.67 E-value=95 Score=25.30 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
.-+.+.+..+++..|..+=..++....++.+.+.++..|-..+...++.++..
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677888888888888888888888888888888888777777777554
No 125
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.39 E-value=74 Score=23.95 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4582 31 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLA 75 (133)
Q Consensus 31 r~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~ 75 (133)
..|++- ..+..-.+|+..+....+|+..|+..=.++..+..+|+
T Consensus 85 ~qsli~-~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 85 QQSLIK-TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345444 55666666777777777777777766666666665554
No 126
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.16 E-value=1.1e+02 Score=25.91 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchh
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPI 127 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapL 127 (133)
-.+..+-++.+.+.-..|......|...|..+...-+.+....+.+.+....+...+..+...+ -+++.++...+.+
T Consensus 175 ~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~-~~l~~~l~~~~~~ 251 (359)
T COG1463 175 GPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARR-DALDDALAALSAL 251 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHH
Confidence 3356667788889999999999999999999999999999999999999998888888886544 5555555544443
No 127
>PRK14140 heat shock protein GrpE; Provisional
Probab=58.78 E-value=91 Score=24.79 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 87 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 87 ~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
...+-+..|-.-.+.+++++... ....++...+.+-..+++|++
T Consensus 85 a~~~~~~~LLpvlDnLerAl~~~--~~~~~~~~i~~Gv~mi~k~l~ 128 (191)
T PRK14140 85 RAQSLASDLLPALDNFERALQIE--ADDEQTKSLLKGVEMVHRQLL 128 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHHH
Confidence 34445556666667777777532 222344555666666676664
No 128
>KOG0250|consensus
Probab=58.76 E-value=2e+02 Score=28.80 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=30.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+++..-.+++++.+..|+.+...++..+..|..+.+++.+.+...
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666677777777777777777777777776666666554
No 129
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=58.47 E-value=1.7e+02 Score=27.90 Aligned_cols=60 Identities=25% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
++..+...++|.++|.....+|+.-.+.++....+|..+..++...-.+|-.--.||++-
T Consensus 46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE 105 (717)
T PF09730_consen 46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE 105 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445666778888888888888888888877777777777777776666665555555543
No 130
>PRK11020 hypothetical protein; Provisional
Probab=57.98 E-value=71 Score=23.85 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
..+.+++.-++.+++-.+.+..... .+++.++..|.+.+.+.|..++.+-
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd--~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGD--AEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544433332222 3578888888888888888887653
No 131
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=57.97 E-value=48 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL 67 (133)
|+..|+|.+..+..-|+.+++...-.
T Consensus 52 LkNeLREVREELkEKmeEIKQIKdiM 77 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEIKQIKDIM 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 132
>KOG0964|consensus
Probab=57.59 E-value=1.1e+02 Score=30.56 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=37.8
Q ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 25 ITDEHIK-MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQT--ENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 25 i~ee~ir-~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~t--q~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
+..+.+. ....+|++.-|...|.-..+.+++++..+... +.+|..-+..+...-.+++.-..++
T Consensus 804 ~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el 870 (1200)
T KOG0964|consen 804 LREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILEL 870 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 56667777777777777777888888877633 3444444444444444444433333
No 133
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.42 E-value=1.4e+02 Score=28.69 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+|++..|...+..+...+..+..-..-|...-..=..+|.+|...+...+..+..|..+.+-+++-...|
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677777788877888887777777777777777777888888888888888888888877777766555
No 134
>KOG2010|consensus
Probab=57.42 E-value=1.3e+02 Score=26.62 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4582 30 IKMSLKSAVEDKIRRKM 46 (133)
Q Consensus 30 ir~SLlsAV~dKLr~rL 46 (133)
++.|+++-|++|.+.-|
T Consensus 116 ~~Dskv~EveekykkaM 132 (405)
T KOG2010|consen 116 LRDSKVSEVEEKYKKAM 132 (405)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 67788888999987764
No 135
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.33 E-value=88 Score=24.18 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETEL-DEILAV 108 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El-e~~l~~ 108 (133)
...-+.+.|++.-|.-+-+.++..+..++....+| ++|+..
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443332 344433
No 136
>PLN02678 seryl-tRNA synthetase
Probab=57.29 E-value=1.4e+02 Score=26.60 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
+..|..+...++.....++ +++.+.+..+..
T Consensus 80 ~~~Lk~ei~~le~~~~~~~---~~l~~~~~~iPN 110 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAK---AALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCC
Confidence 3333344444443333333 334444445543
No 137
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=57.26 E-value=93 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q psy4582 32 MSLKSAVEDKIRRKMN--EQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~--e~~~~~~aEle~L~~tq~eL~~ 69 (133)
..++.||.+-+.+|.+ .-...+..++...+..-+.|..
T Consensus 97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~ 136 (216)
T cd07627 97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKR 136 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777777765 4455777777777777776654
No 138
>PRK01203 prefoldin subunit alpha; Provisional
Probab=57.07 E-value=63 Score=24.32 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTT 123 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~ 123 (133)
+...++-|+++.+.+..+++.++....++...++.+.+....+=.++.+|
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVP 54 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLIS 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEE
Confidence 45566677777777777777777777777778877765322222444443
No 139
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=56.99 E-value=57 Score=21.86 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=37.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4582 19 PSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFER 80 (133)
Q Consensus 19 ~~~~gti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~r 80 (133)
|...+-|..|. .||+| | ..|.+.+.-+++|+++|+..-..=..+..+-+..++|
T Consensus 11 ka~~~~i~~d~--Lslls-V-----~El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFrr 64 (65)
T COG5509 11 KAFGHEIGNDA--LSLLS-V-----AELEERIALLQAEIERLKAELAKKKASRSAAEALFRR 64 (65)
T ss_pred cccccccchhH--HHHhh-H-----HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc
Confidence 34445666665 47777 3 3577888889999999888777666666666665554
No 140
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=56.96 E-value=81 Score=24.80 Aligned_cols=88 Identities=23% Similarity=0.243 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 31 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 31 r~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++|++-+=+ +..-+.+.+...+++.|.........--..|+..+..+......-. .++.+.+..-.
T Consensus 26 ~~S~~rwk~----~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~v~~~~~~~~ 91 (177)
T PF03234_consen 26 KRSLFRWKH----QARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADK----------QEVMESLNEPF 91 (177)
T ss_pred hHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH----------HHHHHHHhccc
Confidence 445554333 3344566677788888877776666666666666666655521111 22222222222
Q ss_pred CCCCCCCccccccCchhhhhhc
Q psy4582 111 EKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 111 ~~~~~dVDeaV~~tapLy~QLl 132 (133)
...+........+..|-|++|+
T Consensus 92 ~~~e~~~~~~~~~~~p~y~~Mi 113 (177)
T PF03234_consen 92 DKKEKPGVENKDPEQPTYDEMI 113 (177)
T ss_pred ccccccccccCCCCCCCHHHHH
Confidence 2222234455567777787764
No 141
>KOG0161|consensus
Probab=56.93 E-value=1.9e+02 Score=30.81 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+..++..-....+.-+..|+.+...|+.++..|.....++++.+..+
T Consensus 950 ~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l 997 (1930)
T KOG0161|consen 950 LTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIREL 997 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444444444433
No 142
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.92 E-value=1e+02 Score=24.87 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 92 ISFLKEKETELDEILA 107 (133)
Q Consensus 92 i~~l~~k~~Ele~~l~ 107 (133)
+..|-.-.+.|++++.
T Consensus 105 ~~~LLpVlDnLeRAL~ 120 (208)
T PRK14154 105 ITDLLPVADSLIHGLE 120 (208)
T ss_pred HHHHhhHHhHHHHHHh
Confidence 3344444444445443
No 143
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.79 E-value=1.5e+02 Score=26.77 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
|..-+.+|..-...|+.....+++.-..|..+.++++
T Consensus 78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~ 114 (514)
T TIGR03319 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELS 114 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 144
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=56.62 E-value=60 Score=24.44 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVT 122 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~ 122 (133)
.|.....||...+.+-+.+..........-..+.+++.+.|... .++++|++.
T Consensus 25 ~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~----Gis~~eL~~ 77 (135)
T PRK10947 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD----GIDPNELLN 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHHhc
Confidence 34456667777777777766666666666666666665555443 377777754
No 145
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.58 E-value=92 Score=26.82 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCCccccccCchhh
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL-TE--KTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l-~~--~~~~dVDeaV~~tapLy 128 (133)
.--..|+..+.-+-.|+.++...-+.|+.|..-|..-+..+ .+ ..-+|||..+.=.--|+
T Consensus 140 ~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~ 202 (319)
T PF09789_consen 140 EQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence 33445555556666667777777777777777777777666 33 45589998775443333
No 146
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=56.50 E-value=69 Score=22.74 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..++++.+.+..++..+.....+++.+++.+
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 147
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=56.39 E-value=92 Score=24.11 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
++.+..+.+....+++++..+...=..-..-=......|.++..-.+.|...+..|..+.+-
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea 139 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777665444444444445667777888888888888877776553
No 148
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=56.37 E-value=91 Score=24.03 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGK-----------------FKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~-----------------~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
+..+....+..+..=.++|+..++.=..|- ..++.++.+|...-+.+......++........
T Consensus 20 ~~~~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~ 99 (168)
T PF15011_consen 20 ALSRCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQKVRDSLSRQVRDVFQ 99 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777776555552 344555555555555555555555555555554
Q ss_pred HHHHhcCCCCCCCccccccCc
Q psy4582 105 ILAVLTEKTEVDVDEAVTTTA 125 (133)
Q Consensus 105 ~l~~l~~~~~~dVDeaV~~ta 125 (133)
..+...+.+.+++++++-.++
T Consensus 100 l~~~~~~~~~l~~~~~~~r~~ 120 (168)
T PF15011_consen 100 LYEQHAGLDELSLKALQQRSG 120 (168)
T ss_pred HHHhccCCCCCCHHHHhccCC
Confidence 444444668888887765554
No 149
>PRK14143 heat shock protein GrpE; Provisional
Probab=56.18 E-value=1.1e+02 Score=25.06 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4582 90 RSISFLKEKETELDEILAV 108 (133)
Q Consensus 90 ~~i~~l~~k~~Ele~~l~~ 108 (133)
+-+..|-.-.+.|++++..
T Consensus 118 ~~~~~lLpV~DnLerAl~~ 136 (238)
T PRK14143 118 NTLSEILPVVDNFERARQQ 136 (238)
T ss_pred HHHHHHHHHHhHHHHHHhc
Confidence 3344444445555555543
No 150
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=56.10 E-value=4.1 Score=29.40 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..++-..+..|+.+...++..+..|+....+++.-.
T Consensus 8 k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 8 KFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -----------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455544445555555555555544443
No 151
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=55.78 E-value=1e+02 Score=27.22 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=4.1
Q ss_pred CCchHHHHHH
Q psy4582 24 TITDEHIKMS 33 (133)
Q Consensus 24 ti~ee~ir~S 33 (133)
.|+.-++-++
T Consensus 49 ~i~AVmvD~~ 58 (387)
T PRK09510 49 VIDAVMVDPG 58 (387)
T ss_pred cccceecChH
Confidence 4444444343
No 152
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.50 E-value=69 Score=22.38 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.....-+++-+..++...+.+++.+..++....++...++.+
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777777777777777777766543
No 153
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.26 E-value=1.3e+02 Score=25.36 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLA---RMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~---~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
-++.+|.+......+=++.|...+.++..++.+|+ .+.++|+.....+......|+.+-+||+.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 45666666666666666666666665555555443 34455555555555555555555555543
No 154
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=55.21 E-value=1.1e+02 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.258 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
|.+.+......+.+|.............+++-|..|...-...+........++..|+..|..+
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555556666666666666666666665555555555555555555544
No 155
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.89 E-value=1.3e+02 Score=27.52 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
+..+.+++.+...+...+..++...+.+++.+.+
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 156
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.84 E-value=35 Score=21.89 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.++..+++++.+.+.++..+..++...+.+++..+
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44445555555555555556655444444444444
No 157
>PRK10698 phage shock protein PspA; Provisional
Probab=54.75 E-value=1.1e+02 Score=24.49 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
++.+.+.+-++..+.+.+.....=...|+..-.++.....+++..+++.-+.+..++..+..+.....+.+..-
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888877776666777777777777777777777777777766666666666666555433
No 158
>KOG0250|consensus
Probab=54.31 E-value=1.8e+02 Score=29.13 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.|+......+.++-.|.....+.+.....++.-+.+|.......+.++......+.++
T Consensus 665 ~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el 722 (1074)
T KOG0250|consen 665 DLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTEL 722 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433333333333333333444444444444444444444444433333
No 159
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.30 E-value=70 Score=22.11 Aligned_cols=62 Identities=32% Similarity=0.398 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLAR---MFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~---~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
.+...++..+++.|++.++.+.+-=.++.. ....|..+-..+...+..+.....+++..+..
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666555433222222 23344444455555555555555555554443
No 160
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=53.42 E-value=57 Score=20.78 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQG----KFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G----~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
..+...+...+..++.+....+.|... .+.|...+..|...-+.+...+.....+.
T Consensus 44 ~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 44 KELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 446667777888888888888888444 55666666666665555555555444443
No 161
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=53.29 E-value=76 Score=22.19 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.....+......|...-++|+.-...++..+.. .+..+..+..|...+.+|+.+...|+.
T Consensus 35 ~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~----Id~Ie~~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 35 LKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQ----IDQIEEQVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555554444444333333 344555666677777777777766653
No 162
>PRK14155 heat shock protein GrpE; Provisional
Probab=53.28 E-value=1.1e+02 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILK 61 (133)
Q Consensus 46 L~e~~~~~~aEle~L~ 61 (133)
+++.+-.++||.+-.|
T Consensus 32 lkd~~lR~~AefeN~R 47 (208)
T PRK14155 32 LKDQALRYAAEAENTK 47 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455556655554
No 163
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=53.01 E-value=1e+02 Score=24.64 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGK---FKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~---~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.+.+...++.++.++..++.|..=- ..+++ +-+++++-...+..|+.++.....|+..++
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555444433311 13444 445666666666666666666666666553
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.68 E-value=1.2e+02 Score=25.53 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..-..+...+....+++..|+..+...+.+..-..+.+..|.
T Consensus 249 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 249 EKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 333334444444555666666666666666666666666553
No 165
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.67 E-value=65 Score=21.70 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...-.+.|++.+..++.+.+.|++....+..+..++...+..+
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888888888888888888877776554
No 166
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=52.56 E-value=32 Score=24.87 Aligned_cols=71 Identities=20% Similarity=0.391 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL---ARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL---~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
|....|.+.-.........+..--..|..+..+| ...+.+++..+..++..++.+...-.||+..|..+++
T Consensus 26 ~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 26 KWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333344444444444444444 3345555666666666666666666677777766654
No 167
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.48 E-value=95 Score=23.09 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRK--MNEQKV-------QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSIS 93 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~r--L~e~~~-------~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~ 93 (133)
..+++..+..+.....|-++.. +..+++ +-...+++|+.+++++..-...+...+.+-+.....|+..+.
T Consensus 61 ~~~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 61 PDPPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777766655554432 223332 456667788888888888888877777777777666665554
No 168
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=52.43 E-value=1.8e+02 Score=27.05 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
.+..+..++.+...=.+...++.++.+-+..|+.+.-..+.+..+|+.+..++.+.+.+-.=.
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLP 439 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLP 439 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777888888888889999999999999999999999999999999999999998765433
No 169
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.11 E-value=83 Score=22.33 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 34 LKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI--DKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 34 LlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rL--e~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.+++-.-+...|...+ ....+++.+...-......=.+++..+.-| ...-..++..+..++.....++..+..+
T Consensus 15 ~~~~~~~~~~~~l~~~~-a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 15 VFGIAGGIFWLWLRRTY-AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33434444444454433 346677777666666666666666666666 6666666666666666666666665544
No 170
>PRK00736 hypothetical protein; Provisional
Probab=51.82 E-value=68 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
.|++.+.+-+++.+.+...+..|..+..+
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444
No 171
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=51.18 E-value=83 Score=23.67 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVT 122 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~ 122 (133)
|....+||...+.+-+.+........+....+..++.+.+.. ..++++|++.
T Consensus 26 Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~----~Git~eeL~~ 77 (134)
T PRK10328 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA----DGINPEELLG 77 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHhh
Confidence 334455666666666555555555555555555555555443 3377777754
No 172
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.89 E-value=83 Score=21.92 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+.|++-+..++.+...|++.+..+.....++...|.++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777777766655
No 173
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=50.75 E-value=1e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+++..|..|..-...++..++.+....
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 174
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.57 E-value=99 Score=23.00 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
....|++-...|+-..+.|+++..++..+.++|.+.|.++
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666655
No 175
>PRK02119 hypothetical protein; Provisional
Probab=50.41 E-value=75 Score=21.31 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++.|..|......-.+.|+.|+.....|...+..++
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444444444444444444444443
No 176
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.29 E-value=1.3e+02 Score=26.03 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+|.+-......-++++..-++.|.+.+..-+.+..++...+.++
T Consensus 15 ~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 15 ELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444444444444444443
No 177
>KOG0946|consensus
Probab=49.83 E-value=40 Score=32.81 Aligned_cols=52 Identities=29% Similarity=0.180 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAV 121 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV 121 (133)
-...+.-.+..+.+|++++.-.....+.|++.+.+++++|....+=+.|+.+
T Consensus 898 k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~ 949 (970)
T KOG0946|consen 898 KSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKV 949 (970)
T ss_pred hcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhh
Confidence 3477888899999999999999999999999999999999877654455444
No 178
>KOG3091|consensus
Probab=49.52 E-value=1.6e+02 Score=27.08 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 23 GTITDEHIKMSLKSAVE-----DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 23 gti~ee~ir~SLlsAV~-----dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
-++.||.+|.-|-+-.. ..|..||.+++++....-.+ ...+..-.-=..++.||++-|.++.+.+.+=+.+++.
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~-~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~ 487 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQ-LKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKG 487 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcch-hccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678888776543211 24556666666554443311 1222223334567888889999999888888888888
Q ss_pred HHHHH-HHHHHHh
Q psy4582 98 KETEL-DEILAVL 109 (133)
Q Consensus 98 k~~El-e~~l~~l 109 (133)
-.+.+ +-.++++
T Consensus 488 d~edi~~~l~E~~ 500 (508)
T KOG3091|consen 488 DQEDIKHQLIEDL 500 (508)
T ss_pred HHHHHHHHHHhhH
Confidence 77777 4444444
No 179
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.42 E-value=2e+02 Score=28.82 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL--KEKETELDEILAVLT 110 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l--~~k~~Ele~~l~~l~ 110 (133)
.....++.+..-...+..--..++..+..++.++..+..|+..+ .....+++..|..|.
T Consensus 981 ~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666677777777777777777777 666677777777764
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.37 E-value=2.2e+02 Score=26.44 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRR------KMNEQKVQAQEEIEILKQTENELNQGKFK--L-ARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 33 SLlsAV~dKLr~------rL~e~~~~~~aEle~L~~tq~eL~~G~~k--L-~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
+..++...|-+. +|++...-.+.|++.|+.-.++|+.--.+ | -..+..|.+|+..|..+++++.-+.++|.
T Consensus 316 ~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 316 NYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 555666666443 46677777788888888888877653221 1 13466777777777777777766666665
Q ss_pred HHH
Q psy4582 104 EIL 106 (133)
Q Consensus 104 ~~l 106 (133)
+.+
T Consensus 396 k~V 398 (622)
T COG5185 396 KSV 398 (622)
T ss_pred HHH
Confidence 544
No 181
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.36 E-value=1.8e+02 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+...+.+|..+...++.....+ .+++...+..+.
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~lP 107 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKAL---EAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCC
Confidence 3333344444444444433333 333444444443
No 182
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.35 E-value=1.6e+02 Score=24.74 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSI 92 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i 92 (133)
++..+..+.+.|+..|
T Consensus 184 ~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 184 QLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 183
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=49.33 E-value=1.1e+02 Score=22.99 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
-.+-++.+|+++...=+..|..|+.+.+++.+....|+.+
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788889999999999999999999998888877643
No 184
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.28 E-value=67 Score=20.39 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
+-|.|-+..+..++..+..|......|..--..+...+..|..
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555444444444444433
No 185
>KOG0993|consensus
Probab=49.09 E-value=1.8e+02 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
-..|++....-|+.+.+++.+....-.++++||.
T Consensus 149 d~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 149 DEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 186
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.02 E-value=78 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
..+..|..|++.....++..-....+|..-++.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 187
>KOG0804|consensus
Probab=48.53 E-value=2.2e+02 Score=26.07 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+...+|++|+ .+++.++...+.|+..++....-|.+++.-..+-+.+++...+ ..+..+..++.+|++-|.++
T Consensus 375 ~~kk~~e~k~-~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~---~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 375 AEKKIVERKL-QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK---EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhH
Confidence 3334444443 3455666666666666666666666665544444444433222 22333444444555544443
No 188
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.53 E-value=1.3e+02 Score=23.66 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
|+.+.|.+-++..+.+.+.....=...|+..-.++...-.+.+..+++.-+.+..++..+..+.....+.+.....
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~ 77 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL 77 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777788777777777666666666666666666666666666666666666666666666666554433
No 189
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=48.24 E-value=93 Score=23.71 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy4582 91 SISFLKEKETELDEILAVL 109 (133)
Q Consensus 91 ~i~~l~~k~~Ele~~l~~l 109 (133)
....+..++.+|+..|+..
T Consensus 55 ~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 55 ELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344455555555555544
No 190
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.99 E-value=1.2e+02 Score=22.94 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQ-----GKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~-----G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
++++.+.....+.+.++.....|+. +.|.|-.-+.+.......+++.+..++.+...++..+
T Consensus 109 ~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 109 KLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555542 3355543344444555566666666666666666554
No 191
>KOG0996|consensus
Probab=47.98 E-value=1.9e+02 Score=29.48 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..+++..-.++-....+++..+.++.+-...+++.++..+.+..+++.+.
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p 435 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAP 435 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc
Confidence 33344444444444444444444444444444444444444444443333
No 192
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=47.85 E-value=1.3e+02 Score=29.33 Aligned_cols=93 Identities=14% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4582 29 HIKMSLKSAVEDKIRRK------------------MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 90 (133)
Q Consensus 29 ~ir~SLlsAV~dKLr~r------------------L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~ 90 (133)
++|+.|+- +..+||.+ |+-+.-.++..+.....-++.|..-.+.|-..|..+..|...+.+
T Consensus 398 qLrRrLri-lnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~ 476 (861)
T PF15254_consen 398 QLRRRLRI-LNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRK 476 (861)
T ss_pred HHHHHHHH-HHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q psy4582 91 SISFLKEKETELDEILAVLTEKTEVDVDEAVT 122 (133)
Q Consensus 91 ~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~ 122 (133)
-+..-.+..-+-....+.=..+-.++|+||.+
T Consensus 477 ~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 477 MFQEKDQELLENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 193
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.84 E-value=94 Score=21.68 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
-...+...+..+.+....+...+..++...+.++..
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555555433
No 194
>KOG2264|consensus
Probab=47.68 E-value=1.9e+02 Score=27.63 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSIS 93 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~ 93 (133)
|+..|+ .+..+.+.++.|++.++.-.++|++--++=+-++.+|+.+....+....
T Consensus 91 Vs~EL~-ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 91 VSLELT-ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 444442 3556667777888888888888777666666666666655555544443
No 195
>PRK00295 hypothetical protein; Provisional
Probab=47.35 E-value=81 Score=20.82 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.|++.+.+.+++.+.++..+..|.++..++
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666666665555554
No 196
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=47.26 E-value=77 Score=30.49 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhH
Q psy4582 35 KSAVEDKIRRKMNEQKVQAQEE---IEILKQTENELNQGK 71 (133)
Q Consensus 35 lsAV~dKLr~rL~e~~~~~~aE---le~L~~tq~eL~~G~ 71 (133)
+..|+.+++.|.+++|+..|-| .|+|+..|.||..+.
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~ 246 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDD 246 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3448899999999999999888 599999999999876
No 197
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.19 E-value=80 Score=20.71 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.|++.+.+.+++.+.++..+..|.++..++.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555555555555543
No 198
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=47.16 E-value=23 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.++..+..|...-..+...+.+|+..+..++..+.+|+.-+..|+.+...+-...
T Consensus 54 ~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~~ 108 (116)
T PF05064_consen 54 ENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSNQ 108 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777778889999999999999999999988888877765443
No 199
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=47.15 E-value=1.7e+02 Score=26.76 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVD 118 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVD 118 (133)
+..+.++..+-..+.+..+.++++.+++++.++.++.=+++|+|
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~ 135 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLD 135 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 33444444444444444444444444444444444444445554
No 200
>PRK02119 hypothetical protein; Provisional
Probab=46.97 E-value=86 Score=21.01 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
=..|++.+.+.+++.+.+...+..|.++..+++..
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35677888888888888888888888888887633
No 201
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=46.95 E-value=1.9e+02 Score=26.79 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
...+.+..++..-+.++..+.......+.|+..+.++.
T Consensus 375 ~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 375 QAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666666666666666666666664
No 202
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.91 E-value=54 Score=21.18 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 75 ARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+.++.||+.+.+.+++.+..+..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444444443
No 203
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.81 E-value=1.2e+02 Score=22.68 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILK 61 (133)
Q Consensus 50 ~~~~~aEle~L~ 61 (133)
..+...++.+|.
T Consensus 30 ~~~~E~EI~sL~ 41 (143)
T PF12718_consen 30 NEQKEQEITSLQ 41 (143)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 204
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.69 E-value=1e+02 Score=21.90 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.+.+++++.+.|...+..|+...+-+++..+
T Consensus 42 e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 42 TNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 3344444444455555555443334444443
No 205
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.68 E-value=1e+02 Score=29.14 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEK---AELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~---~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+..|+..|++-.++|. .|+......-++++ ..+|+.+...+++-..+|+-|.+-+
T Consensus 458 lk~eL~qlr~ene~Lq---~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQ---NKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555443 35555555555555 6677777777777888888887764
No 206
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.59 E-value=99 Score=21.59 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLAR---MFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~---~i~rLe~e~~~le~~i~~l~~k 98 (133)
+....+.....++.|.....+|..=-.+|.+ -+++|+.--.+|+.=+..|+.|
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666667776666666555544444 4444444444444444444444
No 207
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=46.57 E-value=1.5e+02 Score=23.51 Aligned_cols=63 Identities=29% Similarity=0.389 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK--------EKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~--------e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+|+....+..+--..++....+|..-...+. .|+. +++.+...+..+..+.++-++.+..|+
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~----~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLKTKDELK----HLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555554333333 3332 466667777777777777776666664
No 208
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.55 E-value=1.4e+02 Score=23.48 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLAR 76 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~ 76 (133)
|.-++.|++.+.++..+++.|...+..++.=+.|-.-
T Consensus 119 d~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~ 155 (171)
T PF04799_consen 119 DQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANW 155 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544443333333
No 209
>PRK00295 hypothetical protein; Provisional
Probab=46.42 E-value=84 Score=20.74 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.-.-.++.|..|..+...-.+.|..|+.....|...+..+++
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344557889999999999999999999999999888888863
No 210
>KOG1853|consensus
Probab=46.12 E-value=1.9e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..|++.++.+.+.++.+.+-|..|.+..+.|++
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344444444444444444444444444444433
No 211
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=46.03 E-value=1.2e+02 Score=22.53 Aligned_cols=45 Identities=9% Similarity=-0.078 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
....+-..|+.++.+++..-.....++..|+.+...+.+.+++..
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555553
No 212
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.03 E-value=1e+02 Score=21.68 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
-..+.+..|+...+.|+..+..+..+.+.+.+.+.++++
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888888888877753
No 213
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=45.89 E-value=1.4e+02 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcc
Q psy4582 80 RIDKEKAELERSISFLKEKETELDEILAVL-TEKTEVDVDE 119 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~~k~~Ele~~l~~l-~~~~~~dVDe 119 (133)
..+.+.+.|...++-..+...--+..|..| .+...+.+|+
T Consensus 33 ~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~ 73 (158)
T PF09486_consen 33 AAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDE 73 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHH
Confidence 333333333333333333333444444444 2233344443
No 214
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.83 E-value=82 Score=20.46 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..+.+++...+.+++..+.++..++++++.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 215
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.65 E-value=97 Score=22.07 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 55 EEIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 55 aEle~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
.+++.+++.-++|+.-..+|+..+.+|+.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333333333344444444455555544
No 216
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.62 E-value=1.6e+02 Score=23.86 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFE-------RIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~-------rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
|......+..+++.|.........-+..|...+. +|..+....+.....++....+..
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666555444444444444433 333344444444444444444333
No 217
>PRK00106 hypothetical protein; Provisional
Probab=45.60 E-value=2.4e+02 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
-+.+|..-...|++....+++.-..|..+..+++
T Consensus 102 rE~rL~qREE~LekRee~LekrE~eLe~kekeLe 135 (535)
T PRK00106 102 IESRLTERATSLDRKDENLSSKEKTLESKEQSLT 135 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 218
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.30 E-value=97 Score=22.47 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+++-+..++.....|++....++.+..++...|..+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666666666666655
No 219
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.96 E-value=2.1e+02 Score=25.85 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERID-KEKAELERSISFLKEKETELDEILAVLTEKTEVDVD 118 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe-~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVD 118 (133)
...+=.+.+..|+.+|..-..++.+.+.+++ ......+++..+|.....-++..+.++.++..+++-
T Consensus 364 ~~~~~~~~~~~~~~dl~k~~k~~~~~~kk~Ek~i~k~~e~se~~l~~~~n~~~~~i~~~~~~~~~~~~ 431 (438)
T COG4487 364 FVEAIDEKLENTQLDLEKEKKAIIRAWKKREKEIEKLIESTENMLGSLLNILGKKIGELEGRENKKIK 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3445566788999999999999999999999 777888899999999999999999988777665543
No 220
>KOG4552|consensus
Probab=44.73 E-value=1.8e+02 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
+|.--+.+++..|..|++...+-+..|+.|+....+.+-++.
T Consensus 64 kla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 64 KLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999888888776654
No 221
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.68 E-value=2.3e+02 Score=29.30 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++....+.+++.+.+....++.-..+.+...+....+...+..+++.+....++.+..+.++.
T Consensus 985 ~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 985 DLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445566677777777777777777777777777778878888888877777777777777775
No 222
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.46 E-value=1.4e+02 Score=25.24 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
+++.+..|+.+.+........++...+..+..+
T Consensus 247 l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 247 LEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444444444444333
No 223
>KOG0996|consensus
Probab=44.28 E-value=3.7e+02 Score=27.53 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..+.+.+...+.....+|+...+.++..++++..+-..|...+.-++..+.++++.
T Consensus 794 ~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 794 ARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555556666666666666555555555555555
No 224
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=44.22 E-value=1.4e+02 Score=22.56 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
|++.|-..+.+=..-+++|-+.+..||.+ +..|++|+++-|++|
T Consensus 82 ELdqi~~~~~~~~d~K~kiL~dL~HLE~V----------v~~KIaEIe~dlekL 125 (125)
T PF11944_consen 82 ELDQITGREQAEVDLKQKILDDLRHLEKV----------VNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHcchhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcC
Confidence 44455444444445566777777777654 556778888777654
No 225
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.11 E-value=2.2e+02 Score=29.40 Aligned_cols=40 Identities=5% Similarity=0.182 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
-...++..+..++.+...+......++.+...+...+..+
T Consensus 384 EleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444
No 226
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.91 E-value=76 Score=19.50 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=18.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
|++.-..|......|..|++.|...+..++.+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555555555555443
No 227
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.87 E-value=1.7e+02 Score=23.54 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|+.+..+.++.+..|++.+++-.+ .--.+++..+++.+-....++..+..-....+||.+.+++|
T Consensus 136 aLK~hAeekL~~ANeei~~v~~~~~---~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 136 ALKAHAEEKLEKANEEIAQVRSKHQ---AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666777777777664432 22345666666667777777777777777777777777666
No 228
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=43.84 E-value=2.1e+02 Score=26.64 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKS----AVEDKIRRKMNEQKVQAQEEIEILKQTENE----LNQGKFKLARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 24 ti~ee~ir~SLls----AV~dKLr~rL~e~~~~~~aEle~L~~tq~e----L~~G~~kL~~~i~rLe~e~~~le~~i~~l 95 (133)
.++++.|...+.. +.+|+.++...+..+.+..-+..+.+.-.+ ...-..+|++.+.+++.--+.-......+
T Consensus 526 ~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 605 (657)
T PTZ00186 526 GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEWKYVSDAEKENVKTLVAELRKAMENPNVAKDDL 605 (657)
T ss_pred cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 4677766554443 556777777776666666666655555432 22223455555555554443100123667
Q ss_pred HHHHHHHHHHHHHhc
Q psy4582 96 KEKETELDEILAVLT 110 (133)
Q Consensus 96 ~~k~~Ele~~l~~l~ 110 (133)
+.+.+++...+..+.
T Consensus 606 ~~~~~~l~~~~~~~~ 620 (657)
T PTZ00186 606 AAATDKLQKAVMECG 620 (657)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666653
No 229
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.40 E-value=85 Score=19.92 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.....+...+..+.++...+++++.....-+.-.+........++.+...|...-
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 89 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRW 89 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666665544443332333344444444444433
No 230
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.25 E-value=1.3e+02 Score=21.87 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+....++...+-|+..+..|..+...+.+.+.+++
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666554
No 231
>PRK14148 heat shock protein GrpE; Provisional
Probab=43.17 E-value=1.7e+02 Score=23.32 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=35.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELE-----RSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le-----~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
+.+.+...-++..-+|+++++.... +-+..|-.-.+.+++++..... ..++...+.+-..+|+||+
T Consensus 61 d~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~--~~~~~~l~~Gv~mi~k~l~ 131 (195)
T PRK14148 61 DEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK--LEEAIAMKEGIELTAKMLV 131 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--chhHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554443 4445555666677777654322 2234456666667777764
No 232
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.10 E-value=1.2e+02 Score=21.67 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+--+|--++=|...|+-|...-..+++.++.+..+...++..+....++...+
T Consensus 61 frLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666655555555555555555544444444444444433
No 233
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=43.09 E-value=2.8e+02 Score=25.80 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
...+.....++..-+..|+.+..+.......|+...+++.
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445556666666777766667776666666666553
No 234
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.03 E-value=1.6e+02 Score=22.99 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
..++.....|+.+...+...++.++.+
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 235
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.81 E-value=1e+02 Score=20.59 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.|.+|..+...-.+.|..|+.....|...+..++
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444455555555555555555554
No 236
>KOG4643|consensus
Probab=42.79 E-value=2.8e+02 Score=27.96 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+.+|.-+...++..+..+.+.-.+|..-...+..+...|+.+......+..+.+....++++.+...
T Consensus 409 e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~ 476 (1195)
T KOG4643|consen 409 EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQ 476 (1195)
T ss_pred HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 33445556666777777777777777777777777777777777777777777766666666666544
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.57 E-value=3e+02 Score=26.06 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
++..|.+|+.+-.+-.+.++.|+.+..++.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555553
No 238
>PRK00736 hypothetical protein; Provisional
Probab=42.55 E-value=98 Score=20.41 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
-.-.++.|..|..+...-.+.|..|+.....|...+..+...
T Consensus 14 lafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 14 VAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344568899999999999999999999999999988888644
No 239
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.35 E-value=1.6e+02 Score=27.84 Aligned_cols=44 Identities=7% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
..+......|+.+..+..+|+.+..+|++.++..++.-...-.+
T Consensus 246 ~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 246 QAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667778888888888888888888888887777665555444
No 240
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.13 E-value=1e+02 Score=20.55 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 54 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 54 ~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.+-++.|-..-+.|+.-...|......+.+|++.|....+.-+.+++.|=..+.
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444555555555555555555555555544433333
No 241
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=42.10 E-value=67 Score=20.79 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
.-++-.....+|...-.+|+.+|++||+
T Consensus 25 ~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 25 QAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 3334444455566666777777777764
No 242
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.01 E-value=2.8e+02 Score=25.43 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy4582 41 KIRRKMNE 48 (133)
Q Consensus 41 KLr~rL~e 48 (133)
+|+..|..
T Consensus 186 ~L~~dl~~ 193 (650)
T TIGR03185 186 RLAGDLTN 193 (650)
T ss_pred HHHHHHHH
Confidence 44444444
No 243
>PTZ00464 SNF-7-like protein; Provisional
Probab=41.80 E-value=1.8e+02 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=8.1
Q ss_pred HHHhhHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERI 81 (133)
Q Consensus 66 eL~~G~~kL~~~i~rL 81 (133)
.|+.|...|+.+...+
T Consensus 106 amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 106 AMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455555555554443
No 244
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.75 E-value=2.2e+02 Score=24.29 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
+.+....+..++..++.-.++|+.--..+.+.+..+..+++.+-..+..|+.+-.++-..+
T Consensus 25 ~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl 85 (294)
T COG1340 25 LKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555445555555555555555555555544444443333
No 245
>KOG0971|consensus
Probab=41.70 E-value=3.2e+02 Score=27.50 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~ 68 (133)
+.++...+.....|+..|+++.+-|.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Ls 423 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLS 423 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 246
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.45 E-value=3.8e+02 Score=26.86 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
+++..-+.++ ..+...+...+.++..+..--..|..-...+...+.+|+.+.+..+.++.....-..++.
T Consensus 305 ~ll~~f~~~~-~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~ 374 (1311)
T TIGR00606 305 DLYHNHQRTV-REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA 374 (1311)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444344433 333334444445555555544555555555555555555555555555544444444443
No 247
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.44 E-value=2.6e+02 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 81 IDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 81 Le~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++.|++.--..+..+..++..|++++...
T Consensus 369 v~~Er~~~~~~l~~~~~~~~~le~~~~~~ 397 (582)
T PF09731_consen 369 VEQERNGRLAKLAELNSRLKALEEALDAR 397 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666655555443
No 248
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=41.35 E-value=1.8e+02 Score=22.98 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l 95 (133)
|++.+..+..--+...+.=.++...-.++..-+..++.+..++.+.+..|
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444333
No 249
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.26 E-value=2e+02 Score=26.58 Aligned_cols=24 Identities=13% Similarity=-0.008 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 82 DKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 82 e~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
+.+.+....+...|+....+++..
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444333
No 250
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.94 E-value=1.4e+02 Score=21.86 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+.+..+-+.|+.+.+-|..-......-+++|++..+++..+++..+...-+++..+.+.+
T Consensus 32 ~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 32 QGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777778888888888888888887777767777766654
No 251
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.91 E-value=2.6e+02 Score=24.77 Aligned_cols=45 Identities=20% Similarity=0.077 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
+.++...+.++.|--...++++.|+.--+--.++|..|+++-+..
T Consensus 244 ~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 244 REYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444445555555555555555444444455555555554333
No 252
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=40.76 E-value=1.7e+02 Score=25.10 Aligned_cols=47 Identities=30% Similarity=0.286 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
|....++|...+.++...+...+.--+.+...+..+.+...-+.+.+
T Consensus 106 L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 106 LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 34444555555666666666666666666666666666666665555
No 253
>KOG4603|consensus
Probab=40.71 E-value=1.9e+02 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
|..-.+.+.+..+.+++|..+|.++
T Consensus 91 l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444555554444443
No 254
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=40.70 E-value=2.9e+02 Score=25.30 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAV----EDKIRRKMNEQKVQAQEEIEILKQTENEL-----NQGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 24 ti~ee~ir~SLlsAV----~dKLr~rL~e~~~~~~aEle~L~~tq~eL-----~~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.++++.|...+..+- +|+.+++..+..+.+..-+...++.-.+. ..-..+|+..+.+++.--+. .....
T Consensus 481 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~--~~~~~ 558 (595)
T PRK01433 481 GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHA--RDIIL 558 (595)
T ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc--CCHHH
Confidence 467777766555543 45555555565565666555555555441 22345666666666554432 23334
Q ss_pred HHHHHHHHHHHHHH
Q psy4582 95 LKEKETELDEILAV 108 (133)
Q Consensus 95 l~~k~~Ele~~l~~ 108 (133)
++++.++++..+..
T Consensus 559 ~~~~~~~~~~~~~~ 572 (595)
T PRK01433 559 INNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554444
No 255
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.67 E-value=1.5e+02 Score=22.10 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENEL-NQGK----FKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL-~~G~----~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
--+++...+.+.+++...|++.|.-...-+ .... ..+..+-...+.+++........+....+.++
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777888887776333222 2222 56666667777777777766666666666553
No 256
>KOG0976|consensus
Probab=40.59 E-value=3.9e+02 Score=26.71 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRK------MNEQKVQAQEEIEIL----KQTENELNQGKFKLARMFERIDKEKAELER 90 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~r------L~e~~~~~~aEle~L----~~tq~eL~~G~~kL~~~i~rLe~e~~~le~ 90 (133)
+..++.|.+....-.+|-+... |+........|...| ...|++|+..+-.|+..-+|+..+.++|..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 4556667776666666665433 233333334444433 345666666666666666666555555443
No 257
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=40.38 E-value=1.5e+02 Score=21.94 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+.++.++.++++.+.+-...-..+-+--+++...+..++....-++..+++++
T Consensus 14 ~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 14 NAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 334455566777777776666666666666666666666555555555555543
No 258
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=40.36 E-value=1.2e+02 Score=25.57 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCccccccCchh
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK--TEVDVDEAVTTTAPI 127 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~--~~~dVDeaV~~tapL 127 (133)
...+....++.+....++.....|+.+..++++-+..++.. .-..|--|+++|+.|
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv~~all~t~vl 255 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSVPQALLATAVL 255 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 44566677777777878888888998888888888777543 222444566666655
No 259
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=40.22 E-value=71 Score=19.01 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
|..+|+-|+.....=+.++..|..|..+|.
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~ 31 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 556677777777777777777777777763
No 260
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.17 E-value=2.2e+02 Score=25.93 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 83 KEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 83 ~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
+....++..++.|+.....|+..++.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666643
No 261
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.98 E-value=2.9e+02 Score=25.70 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
|.+|..+....+..++.|+.+.++|..-++
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445555555555555555555555554443
No 262
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.75 E-value=1.1e+02 Score=20.33 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..|.+.+.+.+++.+.+...+..|..+..+++..
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4677788888888888888899998888887643
No 263
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.42 E-value=2.5e+02 Score=24.19 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4582 79 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVD 116 (133)
Q Consensus 79 ~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~d 116 (133)
+.+..+...++..+..--...+.|-+.++.-++.-++|
T Consensus 264 k~ireEN~rLqr~L~~E~erreal~R~lsesEsslE~d 301 (310)
T PF09755_consen 264 KEIREENRRLQRKLQREVERREALCRHLSESESSLEMD 301 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444555555554455555555555554443343
No 264
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.36 E-value=1.9e+02 Score=22.70 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..|..-..+|...+..|+.+...+.+....+++.-..|=..+...
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555554444443
No 265
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.35 E-value=3e+02 Score=25.08 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKV---QAQEEIEILKQ--------TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 40 dKLr~rL~e~~~---~~~aEle~L~~--------tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
..+|.++..... ...+|.++|++ .++.|....+.+....+.|+.++..+...++.|..+.+.+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777665554 56788888875 5667778888999999999999999999988888776543
No 266
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.35 E-value=1.1e+02 Score=20.08 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 82 DKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 82 e~e~~~le~~i~~l~~k~~El 102 (133)
+.....+...+..|+..++++
T Consensus 38 E~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555443
No 267
>PF09596 MamL-1: MamL-1 domain; InterPro: IPR019082 This entry represents the N-terminal domain found in a family of neurogenic mastermind-like proteins (MAMLs), which act as critical transcriptional co-activators for Notch signaling [, ]. Notch receptors are cleaved upon ligand engagement and the intracellular domain of Notch shuttles to the nucleus. MAMLs form a functional DNA-binding complex with the cleaved Notch receptor and the transcription factor CSL, thereby regulating transcriptional events that are specific to the Notch pathway. MAML proteins may also play roles as key transcriptional co-activators in other signal transduction pathways as well, including: muscle differentiation and myopathies (MEF2C) [], tumour suppressor pathway (p53) [] and colon carcinoma survival (beta-catenin) []. MAML proteins could mediate cross-talk among the various signaling pathways and the diverse activities of the MAML proteins converge to impact normal biological processes and human diseases, including cancers. The N-terminal domain of MAML proteins adopt an elongated kinked helix that wraps around ANK and CSL forming one of the complexes in the build-up of the Notch transcriptional complex for recruiting general transcription factors. This N-terminal domain is responsible for its interaction with the ankyrin repeat region of the Notch proteins NOTCH1 [], NOTCH2 [], NOTCH3 [] and NOTCH4. It forms a DNA-binding complex with Notch proteins and RBPSUH/RBP-J kappa/CBF1, and also binds CREBBP/CBP [] and CDK8 []. The C-terminal region is required for transcriptional activation.; GO: 0003713 transcription coactivator activity, 0007219 Notch signaling pathway, 0045944 positive regulation of transcription from RNA polymerase II promoter, 0016607 nuclear speck; PDB: 3NBN_F 2F8X_M 3V79_M.
Probab=39.35 E-value=1.1e+02 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy4582 34 LKSAVEDKIRRKMNE 48 (133)
Q Consensus 34 LlsAV~dKLr~rL~e 48 (133)
.++||-|+||+|+.-
T Consensus 3 kh~avveRLRrRIE~ 17 (61)
T PF09596_consen 3 KHSAVVERLRRRIEL 17 (61)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 468999999999763
No 268
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=39.33 E-value=2.4e+02 Score=25.28 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELE--------RSISFLKEKETELDEILAVL 109 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le--------~~i~~l~~k~~Ele~~l~~l 109 (133)
+..++..|.-..+||++.-...+..-+++. ..+..+++|..|+++.+++.
T Consensus 11 ~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 11 ITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666555544443 34677888999999888876
No 269
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.18 E-value=1.9e+02 Score=22.68 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy4582 73 KLARMFERI 81 (133)
Q Consensus 73 kL~~~i~rL 81 (133)
.|+..+.+|
T Consensus 122 ~Le~e~~~L 130 (161)
T TIGR02894 122 ELEKELEKL 130 (161)
T ss_pred HHHHHHHHH
Confidence 333333333
No 270
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.06 E-value=1.7e+02 Score=22.18 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+...++++..|+.+++.-...|...-++.+.-|.+|+.-...|..-+....+..
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566788888888888888888888888888888888888877776665543
No 271
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.04 E-value=1.2e+02 Score=23.24 Aligned_cols=20 Identities=5% Similarity=-0.185 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy4582 91 SISFLKEKETELDEILAVLT 110 (133)
Q Consensus 91 ~i~~l~~k~~Ele~~l~~l~ 110 (133)
....+..++.+|++.|+...
T Consensus 65 ~~~~~e~rI~~L~~~L~~A~ 84 (160)
T PRK06342 65 QMARPLRDLRYLAARRRTAQ 84 (160)
T ss_pred HHHHHHHHHHHHHHHHccCE
Confidence 34445555666666666553
No 272
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=39.00 E-value=2.5e+02 Score=24.16 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVD 116 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~d 116 (133)
-.+--..+..-+..+..-..+|..--.++..+|..|...+..+++.+..+..-..-..+-+.-=+++..+|
T Consensus 41 q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~d 111 (384)
T PF03148_consen 41 QYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGID 111 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcc
Confidence 33344455566677777888888888888888888888888888888888877777777665545554443
No 273
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=1.2e+02 Score=23.10 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..++-++.|+..++.+++.+..+..+.+++.+.+..+
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l 127 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQL 127 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888877777655
No 274
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=38.38 E-value=2.2e+02 Score=23.30 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 29 HIKMSLKSAVEDKIRRKMNEQKVQAQ--EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 29 ~ir~SLlsAV~dKLr~rL~e~~~~~~--aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
.++..|...|+..|+.+=-.+++-.+ .+-++-.-...-+..=-..|.....+++.++..+..+...+.
T Consensus 36 ~~q~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~ 105 (238)
T PF14735_consen 36 RMQQRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLE 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888887555554332 222221112233344445566666666666666666644333
No 275
>PRK14158 heat shock protein GrpE; Provisional
Probab=38.34 E-value=2e+02 Score=22.85 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 89 ERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 89 e~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
+.-+..|-.-.+.+++++.... .-+++.++.+-..+|+|++
T Consensus 90 ~~~~~~lLpV~DnLerAl~~~~---~~~~~~i~~Gv~mi~k~l~ 130 (194)
T PRK14158 90 ESLILEILPAVDNMERALDHAD---EESMSAIIEGIRMTLSMLL 130 (194)
T ss_pred HHHHHHHHhHHhHHHHHHhccC---cchHHHHHHHHHHHHHHHH
Confidence 3444445555555666554321 1233445555555555543
No 276
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.28 E-value=2.2e+02 Score=23.79 Aligned_cols=56 Identities=4% Similarity=-0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhh
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy 128 (133)
+.......+|+.+.+..+..-+.+..+.+++.-. +......--=||.+..|..|.|
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~-~~~~~~~~~vi~~p~~P~~p~~ 329 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE-ADRQQLYLEVISQPSLPDDALE 329 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhheeeeeeeCCCCCCCcCC
Confidence 3334455666666666666666666666665411 1223333345677888888776
No 277
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.97 E-value=2e+02 Score=23.09 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCccccccCchhhhh
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT---EKTEVDVDEAVTTTAPIYKQ 130 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~---~~~~~dVDeaV~~tapLy~Q 130 (133)
-+..+...-+.|......|...+..+..--..+..+-..+..-...+...+..+. ..-..++++++..-.|+..+
T Consensus 193 ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~ 270 (291)
T TIGR00996 193 LIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRPNLPQALANLAPVLTL 270 (291)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555554444444444444444443333221 11224566666555555443
No 278
>KOG2751|consensus
Probab=37.69 E-value=2e+02 Score=26.00 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
+..-.+.|+.-+.++-..+.+++.+.+.|...+..++.+..++.+-
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~ 226 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEE 226 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777778888888888888888888888888877776554
No 279
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.59 E-value=1.3e+02 Score=25.91 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=0.6
Q ss_pred HHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTE 64 (133)
Q Consensus 52 ~~~aEle~L~~tq 64 (133)
....|++.++..+
T Consensus 109 elkkEie~IKk~q 121 (370)
T PF02994_consen 109 ELKKEIENIKKNQ 121 (370)
T ss_dssp ---------H---
T ss_pred HHHHHHHHHhhhH
Confidence 3455666666433
No 280
>KOG0999|consensus
Probab=37.53 E-value=2.6e+02 Score=26.58 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
++..+...++|.++|.+-.++|+.....+++.-.||.++..+..-.-.+|-..-.||++
T Consensus 119 ~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 119 LRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888999999999999888888888888888888777777666666666554
No 281
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=37.50 E-value=38 Score=24.52 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 28 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 28 e~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
|.++..|.+ ....|+..|-+.++..-++ --.....|..+..+|..+-.-|..-+..+......+....++++..+.
T Consensus 29 e~L~~dL~~-~~~~L~~~Li~lIN~dY~d---Fv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~ 104 (133)
T PF06148_consen 29 EDLRKDLRS-YSKELKNELIELINDDYAD---FVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLE 104 (133)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhHHH---HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 4455555665665555444 233445555666555555555555555555554444444444444443
No 282
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=37.49 E-value=1.8e+02 Score=22.10 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 54 QEEIEILKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 54 ~aEle~L~~tq~eL~~G~~k--L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..-+..|++.-..|.+|... |++.+.+..++.++++.....++.....++..+...
T Consensus 22 ~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 22 NIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666555544 888888888888888888888888888877776543
No 283
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.20 E-value=2e+02 Score=22.43 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
.|...+..|+.....|+.....++..
T Consensus 86 rl~~rE~~L~~~~~~L~~~e~~l~~~ 111 (201)
T PF12072_consen 86 RLQQREEQLDRRLEQLEKREEELEKK 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333
No 284
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=36.99 E-value=1.2e+02 Score=19.81 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQG-----------KFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G-----------~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
.+.+.|++....++..++.++...+++... .--|+.+|...+...+=|+..+..|+++
T Consensus 21 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ltl~~Gi~~~~~~i~W~~~~~~~L~~~ 89 (90)
T PF10400_consen 21 EAIELLEERREQHEERLAEYEEIEQEIFSDPDELDPEAFYWYLTLEYGIRYEQAEIEWCEEAIEELEKR 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445556666666777777777766665554 2235667777777777777777777654
No 285
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.85 E-value=3.9e+02 Score=25.73 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFK---LARMFERIDKEKAELERSI----SFLKEKETELDE 104 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~k---L~~~i~rLe~e~~~le~~i----~~l~~k~~Ele~ 104 (133)
++++.+=.|.||.+|.+...++..--.++..++.++..-... +.+++..-+.+..++...| ..+++|...++.
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667888888887777777777777777776654433 4455555566666666665 344466666766
Q ss_pred HHHHhcC
Q psy4582 105 ILAVLTE 111 (133)
Q Consensus 105 ~l~~l~~ 111 (133)
....+.+
T Consensus 418 ~k~Rl~~ 424 (775)
T PF10174_consen 418 EKERLSS 424 (775)
T ss_pred HHHHHhc
Confidence 6666653
No 286
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.72 E-value=1.6e+02 Score=21.26 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.+..|++..+.|+..+..+......+.+.+
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 287
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=36.65 E-value=12 Score=34.04 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..+++.||.||-.+.++|.+.-..|+..++.=.++|
T Consensus 432 d~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii 467 (495)
T PF12004_consen 432 DSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRII 467 (495)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHH
Confidence 356778888888888888888777777765554555
No 288
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.40 E-value=2.9e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKF 72 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~ 72 (133)
-+|+..|=+-..++++--++..+..+..|...+.
T Consensus 254 lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 254 LEKIESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 289
>KOG4603|consensus
Probab=36.11 E-value=2.3e+02 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 79 ERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 79 ~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
.+|+.+.++|++.|..++.+...+.+....
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355556666666666666665555554433
No 290
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=36.09 E-value=3.4e+02 Score=24.75 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+++.+.+...++....+...++...-..|...+.+.++....++..-..++.-.
T Consensus 108 l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il 161 (779)
T PRK11091 108 LKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFL 161 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555666666666665555555555555443
No 291
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.07 E-value=2.2e+02 Score=22.51 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----H---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMNEQKVQAQ-------EEIEILKQTENE----L---NQGKFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~e~~~~~~-------aEle~L~~tq~e----L---~~G~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
..++||=-.|+. +|+..+...+ .|...|++.|-- | ...+..|-..|.+...|.-.+......++.
T Consensus 4 ~rvlSar~~ki~-~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 4 QRVLSARLHKIK-ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666555554 4444444444 444444444332 1 122455566677777777777777777666
Q ss_pred HHHHHHHHHHH
Q psy4582 98 KETELDEILAV 108 (133)
Q Consensus 98 k~~Ele~~l~~ 108 (133)
+..++++.+.+
T Consensus 83 ~~r~~~~klk~ 93 (194)
T PF15619_consen 83 QERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
No 292
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.78 E-value=4.2e+02 Score=26.40 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
....+++..+..+.........++.....++..++........++....++...+..+
T Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 530 (1201)
T PF12128_consen 473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAEL 530 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444455555555555555555555555554444444
No 293
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=35.75 E-value=25 Score=33.14 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHH
Q psy4582 37 AVEDKIRRKMNEQKVQAQEEIEILKQTEN----------ELNQGKFKLARMFE 79 (133)
Q Consensus 37 AV~dKLr~rL~e~~~~~~aEle~L~~tq~----------eL~~G~~kL~~~i~ 79 (133)
...|-.|.|..+.+...+|||+.+++-.+ -|+.++.+|++...
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 35677788888888889999998886554 34445555555444
No 294
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.65 E-value=2.2e+02 Score=22.44 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILK 61 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~ 61 (133)
++|.+-+..+..|.+.|+
T Consensus 58 ~~L~epL~~a~~e~~eL~ 75 (201)
T PF13851_consen 58 KRLSEPLKKAEEEVEELR 75 (201)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344445555555555554
No 295
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=35.57 E-value=2.8e+02 Score=23.70 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
.+.+|++.+..+...+..-+.....
T Consensus 109 ~~~el~~~k~~l~~~~~~k~~~L~~ 133 (355)
T PF09766_consen 109 QLKELEQRKKKLQQENKKKKKFLDS 133 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 296
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.46 E-value=2.2e+02 Score=22.28 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 57 IEILKQTENELNQGKFKLA-------RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~-------~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++.|..++.++..=+..+. +.|.+|..+...+...+.+..+.+.-|..++.+--
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~ 169 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKF 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 3444444444444444444 45777777777777788888888888888887643
No 297
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.12 E-value=2.9e+02 Score=23.76 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELN-----QG---------KFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~-----~G---------~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..++.+.++.+...+.|++...++. .| ...|..++.+.......+...+..|+++..|+..=
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4566677777777778888777777 22 34566677777777777777777777776665544
No 298
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=35.07 E-value=2.8e+02 Score=23.48 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 61 KQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 61 ~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
.+.-+-|..=..-.++++.++..-...-...++.+...+..+...|..+.+.
T Consensus 21 ~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 21 LQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333334444445566777777777777777777777777777778777654
No 299
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.97 E-value=1.5e+02 Score=20.18 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..++..+......+..|......+......-...-.+|....+........++.....|++.....
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~ 76 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLEN 76 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 445566666677777777777777755432233445555555666666666666666666665544
No 300
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=34.94 E-value=1.6e+02 Score=24.37 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
+-..|=.|+++-..+-..--+.-+..-++++..+.++++.+.+|+.-..+++.-|...+.....
T Consensus 5 I~eILPqRIQEw~~~p~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~ 68 (236)
T PF12269_consen 5 IYEILPQRIQEWQLSPCVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQFTVD 68 (236)
T ss_pred HHHHChHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3344445555544443333333344444566666666667777666666666666665554444
No 301
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=34.63 E-value=92 Score=23.85 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.+.++..|+.+++.+...|+.|+++|-+.+..-.
T Consensus 20 ELLdrfd~ER~eWE~Q~kemq~kieql~~e~~~~r 54 (141)
T PF14818_consen 20 ELLDRFDRERQEWEQQWKEMQRKIEQLQKEVKPRR 54 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 46889999999999999999999999988775553
No 302
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.52 E-value=1.8e+02 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy4582 91 SISFLKEKETELDEILAVL 109 (133)
Q Consensus 91 ~i~~l~~k~~Ele~~l~~l 109 (133)
.++.|+.+++.|+..++.|
T Consensus 97 ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544
No 303
>PRK14127 cell division protein GpsB; Provisional
Probab=34.43 E-value=1.8e+02 Score=21.18 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 81 IDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 81 Le~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
|.++...|+..+..++.+..++...+..
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444444444444444443
No 304
>PF10546 P63C: P63C domain; InterPro: IPR018874 This entry represents the C-terminal domain from p63 (Q94MQ6 from SWISSPROT), one of the proteins of Myxococcus phage Mx8. The function of these proteins are unknown [].
Probab=34.22 E-value=27 Score=24.89 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=31.4
Q ss_pred hccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy4582 5 LTRWTLDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRK 45 (133)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~gti~ee~ir~SLlsAV~dKLr~r 45 (133)
|.-|..+.+..+.-|..-|.+|-+.|...|-..|-+.|+.+
T Consensus 28 L~gw~~~~~~~~~rP~~vG~~Tn~~VY~~L~p~vl~eLk~~ 68 (94)
T PF10546_consen 28 LRGWPYPGHSKKKRPGYVGKLTNDIVYERLAPGVLEELKER 68 (94)
T ss_pred HhCCCCCCCCCCCCCchHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 44566555555556888899999999999988888887765
No 305
>PRK14150 heat shock protein GrpE; Provisional
Probab=34.22 E-value=2.3e+02 Score=22.32 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 68 NQGKFKLARMFERIDKEKAEL-----ERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~l-----e~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
.+-...++..-+|+++++... .+-+..|-.-.+.+++++.... ....++...+.+-.-+|+||+
T Consensus 62 lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~-~~~~~~~~~~~Gv~mi~~~l~ 130 (193)
T PRK14150 62 LRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAAD-KENEALKALIEGVELTLKSLL 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc-ccchhHHHHHHHHHHHHHHHH
Confidence 333444444444554444433 3334445555566666664321 122233445555566666654
No 306
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.03 E-value=1.5e+02 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy4582 93 SFLKEKETELDEILAVLT 110 (133)
Q Consensus 93 ~~l~~k~~Ele~~l~~l~ 110 (133)
..|....+.++..++.+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 75 KVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566666665553
No 307
>KOG4005|consensus
Probab=33.93 E-value=2.9e+02 Score=23.37 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 90 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~ 90 (133)
.++.|.++|++...-|..-..++.-.|..+.++-..+..
T Consensus 108 ~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 108 ILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444444444444444444444444433
No 308
>PRK14156 heat shock protein GrpE; Provisional
Probab=33.62 E-value=2.4e+02 Score=22.18 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy4582 92 ISFLKEKETELDEIL 106 (133)
Q Consensus 92 i~~l~~k~~Ele~~l 106 (133)
+..|-.-.+.+++++
T Consensus 80 ~~~LLpVlDnLerAl 94 (177)
T PRK14156 80 AKAILPSLDNLERAL 94 (177)
T ss_pred HHHHhhHHhHHHHHH
Confidence 333444444555554
No 309
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.54 E-value=2.9e+02 Score=23.24 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4582 94 FLKEKETELDEILAVL 109 (133)
Q Consensus 94 ~l~~k~~Ele~~l~~l 109 (133)
.+.....-...-++.|
T Consensus 117 sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 310
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.32 E-value=2.1e+02 Score=21.61 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=56.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy4582 17 SSPSQGGTITDEHIKMSLKSAVEDKIRRK---MNEQKVQAQEEIEI--------LKQTENELNQGKFKLARMFERIDKEK 85 (133)
Q Consensus 17 ~~~~~~gti~ee~ir~SLlsAV~dKLr~r---L~e~~~~~~aEle~--------L~~tq~eL~~G~~kL~~~i~rLe~e~ 85 (133)
+.|+.+|-|.++-++..+...+. ++.+. +.+.++..-.++.. .....+.+...+.++++-+.+|..=.
T Consensus 87 vd~~~~a~i~e~~L~~el~~~l~-~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd 165 (204)
T PF04740_consen 87 VDSSSNAIIDEDFLESELKKKLN-QLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFD 165 (204)
T ss_pred HcccccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888877755433222 11222 22222222333333 36677778888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 86 AELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 86 ~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..--.-...+......+...++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~l~~l~ 190 (204)
T PF04740_consen 166 QQSSSIFSEIEELLQALQSGLSQLQ 190 (204)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666667777777664
No 311
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.16 E-value=2.7e+02 Score=22.64 Aligned_cols=55 Identities=29% Similarity=0.337 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
|.+.....+.+-..|.+-+.++..-..+|.........++..|...+..+...+.
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444444444444443333333
No 312
>PRK14151 heat shock protein GrpE; Provisional
Probab=33.13 E-value=2.4e+02 Score=22.03 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILK 61 (133)
Q Consensus 46 L~e~~~~~~aEle~L~ 61 (133)
+++.+-.++||++-.+
T Consensus 39 l~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 39 AKDQSLRAAADLQNVR 54 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455554443
No 313
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.05 E-value=2.2e+02 Score=21.77 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMN--EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 33 SLlsAV~dKLr~rL~--e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..+.+|.+-|++|-+ -....+..+++.-+..-+.|......=.+-+..++.+...++..+...+.+-+.+.+
T Consensus 118 ~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 118 RYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666643 334455555555555555554441111344444455555555555544444444433
No 314
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=32.84 E-value=3e+02 Score=26.60 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 55 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 55 aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
...+.|..+...|+.+...|.+.+.+|..+...+++.+..++.+....
T Consensus 705 ~~~~~l~~l~~~L~~~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~ 752 (851)
T TIGR00344 705 EQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQ 752 (851)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777887777788888888888888888888887776543
No 315
>PRK11519 tyrosine kinase; Provisional
Probab=32.69 E-value=3.1e+02 Score=25.55 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhh
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY 128 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy 128 (133)
++.+..+.+|+++.+.-+..-..|-.+.+|+.-.- .......-=||.|..|..|..
T Consensus 366 p~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~-a~~~~~~rIid~A~~P~~P~~ 421 (719)
T PRK11519 366 PKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITE-ASTVGDVRIVDPAITQPGVLK 421 (719)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-cCCCCCeEEEecCCCCCCCCC
Confidence 34556677788888888887777777777763221 122222222566777766653
No 316
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=32.57 E-value=1.9e+02 Score=20.67 Aligned_cols=31 Identities=10% Similarity=0.323 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.|..-+..|+.....++.....+..+....+
T Consensus 84 ~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 84 KIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 317
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.48 E-value=2.5e+02 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 86 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~ 86 (133)
+....++.+++.++.+-..|...-..|+..|..++..++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443333
No 318
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=32.41 E-value=24 Score=28.11 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
.+.|..|++++.. ....-.+.+..+...+.++..|+.++.++.||
T Consensus 157 ~~am~~R~~Ae~~-~~Ar~~~~~Ga~~~~~~~~~~~~~~~~~~~~~ 201 (219)
T cd03402 157 AQAMLQRQQASAI-IAARRKIVEGAVGMVEMALTRLEEREIVELDD 201 (219)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcccchHHHHHHHHHHhCCCccCCH
Confidence 3556666666654 45666778888999999999999999888887
No 319
>KOG4657|consensus
Probab=32.30 E-value=3e+02 Score=22.98 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..+.++.+.-+++|+.+...++..+.+...-.++++.|.+.+.++.+..
T Consensus 88 q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~ 137 (246)
T KOG4657|consen 88 QMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENA 137 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33556666667777777777777777777777777777766555554433
No 320
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=32.23 E-value=1.8e+02 Score=21.58 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.=|+.|+.|+...+.--..|...+..|+-++.
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 321
>KOG1666|consensus
Probab=32.16 E-value=2.9e+02 Score=22.75 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l 95 (133)
..|....++.+-..+.|+.+.+.|.+...-|..|++|+-+++-.|-..|-.+
T Consensus 156 ~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l 207 (220)
T KOG1666|consen 156 EDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALL 207 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888999999999999999999999998888777666544
No 322
>PRK14162 heat shock protein GrpE; Provisional
Probab=32.08 E-value=2.6e+02 Score=22.24 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 89 ERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 89 e~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
++-+..|-...+.+++++.... ...++...+.+-..+|+||.
T Consensus 89 ~~~~~~LLpV~DnLerAl~~~~--~~~~~~~l~~Gvemi~k~l~ 130 (194)
T PRK14162 89 QSLAKDVLPAMDNLERALAVKA--DDEAAKQLKKGVQMTLDHLV 130 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhccc--cchhHHHHHHHHHHHHHHHH
Confidence 3344455555555666654321 12223344555555555543
No 323
>PHA01750 hypothetical protein
Probab=32.06 E-value=1.7e+02 Score=20.02 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy4582 95 LKEKETELDE 104 (133)
Q Consensus 95 l~~k~~Ele~ 104 (133)
+++++.|+.+
T Consensus 61 l~~qv~eik~ 70 (75)
T PHA01750 61 LSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 324
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.04 E-value=1.8e+02 Score=20.47 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~ 69 (133)
++.++..++.+..|.....++..
T Consensus 12 ~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 12 QQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333333
No 325
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.92 E-value=2.8e+02 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
+|...-..++.+|.+|....+++...++.++++-.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555554443
No 326
>KOG4593|consensus
Probab=31.60 E-value=1.6e+02 Score=28.11 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLAR-------------MFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~-------------~i~rLe~e~~~le~~i~~l~~k 98 (133)
|-+...+..+..++||++.|+..-.+|..+.+...+ .++.|+.+....++..++|++.
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~v 622 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEV 622 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
No 327
>KOG2260|consensus
Probab=31.40 E-value=1.7e+02 Score=25.79 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++...+++..+++....++.+..++++.++.|
T Consensus 42 r~~~~q~~eei~k~~~~~~~ll~e~~e~l~~l 73 (372)
T KOG2260|consen 42 RAERKQEQEEIKKSKDMYSRLLEEVQEILSNL 73 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444444444444444444444444433
No 328
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.13 E-value=4.8e+02 Score=25.00 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
........+...|+.--.+++..+.++-.-.++|+.|.-.|++.+..|+..
T Consensus 69 ~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 69 KECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333344444445555555555555555555555555555555555554443
No 329
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=30.89 E-value=3.4e+02 Score=23.22 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTEN-----ELNQGKFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~-----eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
++..+++.+.++..+....+ ++..-.....+.+.+++.+...++..+..+...
T Consensus 58 ~~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 58 LQQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554333 344444444444444444444444444444333
No 330
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=30.88 E-value=1.3e+02 Score=28.04 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVD 116 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~d 116 (133)
...+.+..|+.+...|+..+..|......|+..|..+.-+|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~ 543 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFN 543 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--B
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 45666777888999999999999999999999998865444444
No 331
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.87 E-value=4.5e+02 Score=24.57 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy4582 93 SFLKEKETELDEILAVLT 110 (133)
Q Consensus 93 ~~l~~k~~Ele~~l~~l~ 110 (133)
..|+....|+...+-.|.
T Consensus 163 ~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666654
No 332
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.85 E-value=1.6e+02 Score=19.29 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
-.-.++.|.+|..+...-...|..|+.....|...+..+.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677888888888888888888888888888888876
No 333
>KOG3335|consensus
Probab=30.73 E-value=2.5e+02 Score=22.49 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTT 123 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~ 123 (133)
+++=+.++.+|+.....+++.++.++....+|.+++.+.+ ++-..++.+-|.
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~-~el~~~~q~~p~ 152 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPE-SELKPIRQAPPN 152 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-ccccccccCCCC
Confidence 5555667777777788888888888888888887766553 122344444443
No 334
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=30.67 E-value=1.7e+02 Score=19.62 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELE-RSISFLKEKETELDEILAVLTEKTEVDV 117 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le-~~i~~l~~k~~Ele~~l~~l~~~~~~dV 117 (133)
++.+=+.|++-+...++.|+-|.+ -.|+ -.|++|+.|.-.+...+.+++..--|||
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~--~~cD~L~iqRmKkKKLAlKDki~~lED~iiPDI 65 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIA--TGCDALRIQRMKKKKLALKDKITKLEDQIIPDI 65 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH--hCCcHHHHHHHHHHHHhHHHHHHHHHHhhcccc
Confidence 344444455555555555555554 2232 3577888888888888888876655554
No 335
>KOG0972|consensus
Probab=30.46 E-value=3.7e+02 Score=23.52 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc-CCCCCCCcccc
Q psy4582 74 LARMFERIDKEKAELERSISFLKE--KETELDEILAVLT-EKTEVDVDEAV 121 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~--k~~Ele~~l~~l~-~~~~~dVDeaV 121 (133)
|.+.|.+++..+.+.+..+..+.+ -...+..++++|+ ....+||-=+|
T Consensus 310 L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv 360 (384)
T KOG0972|consen 310 LDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGV 360 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheeh
Confidence 445555555555555555554443 2345556666663 23444544333
No 336
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.41 E-value=2.4e+02 Score=21.31 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
-..++.++.||..-+...++.+..|+....
T Consensus 56 ~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 56 IEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777776643
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=30.28 E-value=4.3e+02 Score=24.17 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH--HH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKF--KL-AR----MFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~--kL-~~----~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+++.+..+..+++.|.....+|..--. .. .+ .+.++..+.+.++..++.+-.+=++++..++.+.
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666555544433332221 11 11 4666666777777777777777777777666664
No 338
>KOG0946|consensus
Probab=30.26 E-value=3.2e+02 Score=26.98 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
...+++.++-....+++.+++...+|..-...++..+.....+...+..+...|+....
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456667777777777777777777777777777777776666666666666665554
No 339
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.23 E-value=3.8e+02 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+...+.+|..+...++.....+..
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 340
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=30.23 E-value=2.2e+02 Score=20.82 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=57.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRKMNEQKV-----------QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~rL~e~~~-----------~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
-|+|.++-.---=||.. ||+|+++ .....|..|...-+-...-.++++.--..|-..+.++.+|.
T Consensus 29 ~i~eqqicqtralav~~----rlkel~~wqgtlschllldkk~qma~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~ 104 (125)
T PRK15352 29 IITEQQICQTRALAVST----RLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNF 104 (125)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHhCccccchhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565554433334554 4555443 44567888887777777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 93 SFLKEKETELDEILAV 108 (133)
Q Consensus 93 ~~l~~k~~Ele~~l~~ 108 (133)
..+-.+.+.+.-.+.+
T Consensus 105 nalmk~kekitmvl~d 120 (125)
T PRK15352 105 NALMKKKEKITMVLSD 120 (125)
T ss_pred HHHHhhhhhhheehhh
Confidence 9988887777655543
No 341
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=30.14 E-value=3.1e+02 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMF 78 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i 78 (133)
|.....+....|+.|.+-..+|...+..|..+|
T Consensus 220 le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 220 LEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555556666666666666666555554
No 342
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.02 E-value=3.2e+02 Score=22.57 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++++-|..+...+..+...+.....++...+.+++
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555443
No 343
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.02 E-value=3.1e+02 Score=22.38 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 34 LKSAVEDKIRRKMN--EQKVQAQEEIEILKQTENELNQ-GKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 34 LlsAV~dKLr~rL~--e~~~~~~aEle~L~~tq~eL~~-G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
++.+|-.-+-.|.+ .....++.++..-+...+.|.. |. .+-+..++.|.++++..+...+..=+++.+.
T Consensus 117 li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~---~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ 188 (234)
T cd07665 117 LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANK---PDKLQQAKDEIAEWESRVTQYERDFERISAT 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 3444566666666666666643 32 2344445555555555555555444444433
No 344
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.89 E-value=2.5e+02 Score=24.16 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
++...=..+++.+..+++....+++.+..+..+..+++..+.
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333444444444555445555555555555555554443
No 345
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=29.86 E-value=1.3e+02 Score=24.82 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
+.+.-+..+.+++.++......+..|..+-.+|+.+|.++..
T Consensus 23 A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 23 AEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556777888889999999999999999999999998743
No 346
>PRK14147 heat shock protein GrpE; Provisional
Probab=29.79 E-value=2.7e+02 Score=21.62 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy4582 51 VQAQEEIEILK 61 (133)
Q Consensus 51 ~~~~aEle~L~ 61 (133)
-.+.||.+-.+
T Consensus 42 lR~~Ad~eN~r 52 (172)
T PRK14147 42 LRERADLENQR 52 (172)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 347
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.54 E-value=4.5e+02 Score=24.16 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 117 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dV 117 (133)
++.++.+.++..-.++++.++..+.--+.++.-.+.+..-++.++....-|+
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~ 264 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDL 264 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHH
Confidence 4445555555555555555555555444555555555555555554444343
No 348
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.49 E-value=3.2e+02 Score=24.27 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELN--QGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~--~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
++..++..+.+.-.++. ...+.+...+..+......|...+..++.-...++...
T Consensus 174 ~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 174 ELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444433 35556666666666666666666666655555554433
No 349
>KOG0979|consensus
Probab=29.46 E-value=4.7e+02 Score=26.30 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
...++.....+.++.--.+|..+...|.+.+.+|+.++++....|..+..-..+.
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 5566788888889988899999999999999999998887777666555443333
No 350
>KOG1962|consensus
Probab=29.25 E-value=2.5e+02 Score=22.91 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
..+++.+...+.+++....--..|++--+.+.++..||-.+-..++..++.
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
No 351
>KOG4403|consensus
Probab=29.25 E-value=4.6e+02 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFER 80 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~r 80 (133)
.+.-++.++.+..+|+.|++.++.|..=+..|++.-.+
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777778888887777776666666554433
No 352
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.18 E-value=2.7e+02 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4582 36 SAVEDKIRRKMNEQKVQ 52 (133)
Q Consensus 36 sAV~dKLr~rL~e~~~~ 52 (133)
+.+.+-++..+.+.+..
T Consensus 4 ~Rl~~~~~a~~~~~ld~ 20 (221)
T PF04012_consen 4 KRLKTLVKANINELLDK 20 (221)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444433333
No 353
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.18 E-value=3.2e+02 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 82 DKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 82 e~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..+++.+...+..+++++++.++.
T Consensus 176 ~~dr~~~~~ev~~~e~kve~a~~~ 199 (243)
T cd07666 176 KADRDLLKEEIEKLEDKVECANNA 199 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 354
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.12 E-value=2.2e+02 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~ 69 (133)
.+-.|...-.+-|.+.|+.+...|..
T Consensus 58 E~A~E~~Y~r~~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 58 EAAQEEQYFRKKEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777665544
No 355
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.10 E-value=2.2e+02 Score=20.36 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
..++..+......+..|...+..|.....+-...-.+|+...+.....+..++..+..|+....
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~ 72 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNE 72 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677777777666554323334445555555555555555666666655543
No 356
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.05 E-value=1.4e+02 Score=18.43 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+|+.++++|+...-.++..+..|+.-.
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~ 33 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGM 33 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 357
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=28.84 E-value=4.6e+02 Score=24.01 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSA----VEDKIRRKMNEQKVQAQEEIEILKQTENE---L--NQGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 24 ti~ee~ir~SLlsA----V~dKLr~rL~e~~~~~~aEle~L~~tq~e---L--~~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.++++.|...+..+ .+|+.++...+..+.+..-+..+++.-.+ . ..-+.+|+..+.+++.--+. .....
T Consensus 503 ~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~d~~~ 580 (616)
T PRK05183 503 GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQG--DDADA 580 (616)
T ss_pred cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc--CCHHH
Confidence 46666666554443 46677776666666666555555544322 1 12234555555555553321 13345
Q ss_pred HHHHHHHHHHHHHHh
Q psy4582 95 LKEKETELDEILAVL 109 (133)
Q Consensus 95 l~~k~~Ele~~l~~l 109 (133)
++.+.+++++.+..+
T Consensus 581 ~~~~~~~l~~~~~~~ 595 (616)
T PRK05183 581 IEAAIKALDKATQEF 595 (616)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666555544
No 358
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.55 E-value=3e+02 Score=21.87 Aligned_cols=39 Identities=10% Similarity=-0.125 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhh
Q psy4582 91 SISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQI 131 (133)
Q Consensus 91 ~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QL 131 (133)
-+..|-.-.+.+++++..... +.+...++.+-..+|+||
T Consensus 88 ~~~~LLpVlDnLerAl~~~~~--~~~~~~l~~Gv~mi~k~l 126 (191)
T PRK14149 88 IALDLLPVIDALLGALKSAAE--VDKESALTKGLELTMEKL 126 (191)
T ss_pred HHHHHhhHHhHHHHHHhcccc--ccchHHHHHHHHHHHHHH
Confidence 334444444555555543221 122233444444445544
No 359
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.49 E-value=4.9e+02 Score=24.22 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 55 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 55 aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.|...|+....+-..+..+.-+.|.++..+...+...+..-.+....|...++.+.
T Consensus 426 ~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 426 EEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444444444333334444445555555555555555554444445555555554
No 360
>KOG0980|consensus
Probab=28.46 E-value=6e+02 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..+.+..+-...+.+++.++.++...+++-.+...+..+.+++
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334555555556666666666555544444444444443333
No 361
>PRK12705 hypothetical protein; Provisional
Probab=28.44 E-value=4.6e+02 Score=23.94 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 64 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 64 q~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
+..|...+..|+.....|+...+.+++.-..+..+..+++.
T Consensus 83 e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 123 (508)
T PRK12705 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEE 123 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666655555555555444444
No 362
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.41 E-value=2.6e+02 Score=21.09 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 50 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 50 ~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
+......+..|...-..-..-+.+|.++......--...++.|..|+...+.+.+|-
T Consensus 42 l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 42 LASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 333344444444433344556666777777777777777777777777777776664
No 363
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.36 E-value=2.1e+02 Score=19.87 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+.+..|+.....++..+..+..+.+.+++-+.++.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777776664
No 364
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.20 E-value=3.2e+02 Score=22.06 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=37.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 65 NELNQGKFKLARMFERIDKEKAE-----LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~-----le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
+.+.+-..-.+..-+|..+++.. +.+-+..|-.-.+.+++++.. ..+.+..+-+-..+|+||+
T Consensus 82 d~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~-----~~~~~~l~~Gv~mi~kql~ 149 (211)
T PRK14160 82 DRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAV-----EGSVEDLKKGIEMTVKQFK 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc-----ccchhHHHHHHHHHHHHHH
Confidence 33444444455555555555544 444555566666777777743 2234567777777888875
No 365
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.11 E-value=3.8e+02 Score=22.91 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 80 RIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
..+.....++.....+.....++...+..+.+.
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~ 122 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQR 122 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555555666666666666666666543
No 366
>KOG0612|consensus
Probab=27.81 E-value=6.9e+02 Score=25.78 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4582 48 EQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~ 69 (133)
++...++..++.++....+|.+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~ 486 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQR 486 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 367
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=4.5e+02 Score=23.59 Aligned_cols=63 Identities=27% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 47 NEQKVQAQEEIEILKQTENELN--------QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~--------~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+..-+...+.+.|++.++.+. +|.......+++.+...+.+..--..+.+...+++..+-.+
T Consensus 35 d~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 35 DEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 3344445555555554444432 22222333444444444444444444444444554444444
No 368
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.75 E-value=2.5e+02 Score=20.70 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
+...+..++.....++..+..++...+++++
T Consensus 79 ~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 79 VAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 369
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.75 E-value=2.2e+02 Score=20.11 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
+++-+..|+...+.+++++..+++....+...
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433333
No 370
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.56 E-value=4.4e+02 Score=23.40 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.+..+..+.+.|..+-.-++.-...++--+..+.++..+-+...+.|.....|.-+....|
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666555556666666666666666666555555555555444444444333
No 371
>KOG3850|consensus
Probab=27.53 E-value=4.6e+02 Score=23.66 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 35 KSAVEDKIRRKMNEQKVQAQEEIEIL-KQTENELNQGK----FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 35 lsAV~dKLr~rL~e~~~~~~aEle~L-~~tq~eL~~G~----~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+-++.|+||.++--.-.+...|..+= -.+++.|+.|. ++.-++-.-.|+....--..|..|+.|.....+.+..+
T Consensus 38 ~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~~rLkei 117 (455)
T KOG3850|consen 38 LKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKEI 117 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44588999988776666666665522 24556666554 33333333344445555566777777777777777777
Q ss_pred c
Q psy4582 110 T 110 (133)
Q Consensus 110 ~ 110 (133)
+
T Consensus 118 e 118 (455)
T KOG3850|consen 118 E 118 (455)
T ss_pred h
Confidence 5
No 372
>smart00150 SPEC Spectrin repeats.
Probab=27.41 E-value=1.7e+02 Score=18.47 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQG-KFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G-~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
..+...+...+..++.+..+...|... .+.-..+-.+++.....++..+..+..+
T Consensus 41 ~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r 96 (101)
T smart00150 41 EALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEER 96 (101)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788899999999988888764 2222333333444444444444444443
No 373
>PRK04406 hypothetical protein; Provisional
Probab=27.38 E-value=2e+02 Score=19.39 Aligned_cols=35 Identities=6% Similarity=0.116 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.|..|..+...-.+.|+.|+.....|...+..+.
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444444443
No 374
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.22 E-value=3.1e+02 Score=21.62 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+.|-..-+.++.+-+..+.+++..+..|+.++++.
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544443
No 375
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.04 E-value=4.1e+02 Score=22.90 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.9
Q ss_pred CCCCCcccc
Q psy4582 113 TEVDVDEAV 121 (133)
Q Consensus 113 ~~~dVDeaV 121 (133)
..++++|.+
T Consensus 207 ~~~s~~d~~ 215 (310)
T PF09755_consen 207 APPSPRDTV 215 (310)
T ss_pred CCCCcchHH
Confidence 345666654
No 376
>KOG0612|consensus
Probab=26.92 E-value=6.5e+02 Score=25.96 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAEL 88 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~l 88 (133)
+.++..+...|-.++..-
T Consensus 699 e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHHHhcccccHH
Confidence 444444444444444333
No 377
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=26.90 E-value=18 Score=26.00 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+...-++-.+...++..+..|+...+++...+..++
T Consensus 5 d~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 5 DNEKFRLAKELSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555553
No 378
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=26.71 E-value=2.3e+02 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=13.3
Q ss_pred hccccccCCCCCCCCCCC
Q psy4582 5 LTRWTLDQEVGGSSPSQG 22 (133)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (133)
+.|||--++|+.++|+..
T Consensus 21 ~YR~Tnk~~Pt~~S~yV~ 38 (125)
T PF12022_consen 21 QYRMTNKPVPTKPSPYVS 38 (125)
T ss_pred HhhccCCCCCCCccHHHH
Confidence 468987777777777665
No 379
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=26.59 E-value=4.3e+02 Score=25.80 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.+.|+...+.|+.....|.+-+.+|..+...+++.+..|+.+..+.
T Consensus 742 ~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~ 787 (900)
T PRK13902 742 EDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAEL 787 (900)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666677777777777777777777777666544
No 380
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=26.57 E-value=2.5e+02 Score=20.33 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy4582 93 SFLKEKETELDEILAVL 109 (133)
Q Consensus 93 ~~l~~k~~Ele~~l~~l 109 (133)
..+..-...+...+.+.
T Consensus 66 ~g~~~i~~~l~~~L~~~ 82 (137)
T cd00446 66 EGVEMTLKQLLDVLEKH 82 (137)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 34444444555555544
No 381
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.54 E-value=4.6e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.++.+++.-+..+..++...+..+..+..++++.+..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888888888888888887753
No 382
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.47 E-value=2.4e+02 Score=20.09 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 68 ~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..-+..|...+..|+.....+...+..++.+..+..+.+..+
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555444
No 383
>KOG4674|consensus
Probab=26.42 E-value=5.6e+02 Score=27.40 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 59 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 59 ~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.|++...++..-+..+...+.+..++...+..-+..|..+...+...+.
T Consensus 112 ~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 112 QLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333344444444444444444444444444433333
No 384
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.38 E-value=2.9e+02 Score=21.01 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
...-++.|++--++|.+...++..+|.+|.+....++...+.+..+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777666666554
No 385
>PLN02320 seryl-tRNA synthetase
Probab=26.25 E-value=5.1e+02 Score=23.69 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL 67 (133)
+..-+.+.+++.|+.-++.+
T Consensus 100 ~~~r~~~~~~~~lr~ern~~ 119 (502)
T PLN02320 100 ENMLALQKEVERLRAERNAV 119 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666555544
No 386
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.22 E-value=2.8e+02 Score=20.71 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 89 ERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 89 e~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
...++.|..++++|...|+.|..+
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677778888888888777543
No 387
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=26.15 E-value=2.8e+02 Score=20.61 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 89 ERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 89 e~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
......+..++.+|++.|+...-
T Consensus 48 k~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 48 KEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Confidence 34445556666667777766643
No 388
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.08 E-value=2.6e+02 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTE 64 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq 64 (133)
+..|+..+...+.||.+|++.=
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777653
No 389
>PLN02678 seryl-tRNA synthetase
Probab=25.96 E-value=4.8e+02 Score=23.32 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFK---LARMFERIDKEKAELERSISFLKEKETELDEILAVL-TEKTE 114 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~k---L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l-~~~~~ 114 (133)
..-++..+++.|++.++.+.+-=.+ -.+....|.++-..+...+..+..+..++++.+..+ ..=.+
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334455555555544444331111 012334555556667777777777777777777766 33444
No 390
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=25.94 E-value=3.2e+02 Score=21.27 Aligned_cols=11 Identities=36% Similarity=0.247 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy4582 88 LERSISFLKEK 98 (133)
Q Consensus 88 le~~i~~l~~k 98 (133)
++.....+...
T Consensus 122 l~~~~~e~~~~ 132 (201)
T PF12072_consen 122 LEEREEELEEL 132 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 391
>KOG0993|consensus
Probab=25.85 E-value=3.5e+02 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 80 RIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+|....--|++.|..+++|..+.+..|.+++
T Consensus 152 Klrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 152 KLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444455678889999999999999998886
No 392
>PRK04325 hypothetical protein; Provisional
Probab=25.79 E-value=2.1e+02 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.|.+.+.+-+++.+.+...+..|..+..++
T Consensus 27 ~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 27 GLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555554444443
No 393
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.77 E-value=2.4e+02 Score=19.78 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
|.....+...-|+.....++..+..|+.....++..+.....
T Consensus 73 ~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (123)
T cd04770 73 GAAPCAEVRALLEEKLAEVEAKIAELQALRAELAGLLSACDG 114 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333344555667777777777777777777777777765543
No 394
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.74 E-value=3.3e+02 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~ 68 (133)
+.+.++..-+.+-.+.-.+|+
T Consensus 43 eEI~TLrqvL~aKer~~~eLK 63 (162)
T PF04201_consen 43 EEIQTLRQVLAAKERHCAELK 63 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 444445545555555555554
No 395
>PRK01156 chromosome segregation protein; Provisional
Probab=25.66 E-value=5.7e+02 Score=24.10 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQG------------KFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G------------~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
...+....++..|+....+|. + +..+.+.+.+...+...++..+..+..+..++++.+..
T Consensus 430 ~~i~~l~~~~~el~~~~~~l~-~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 430 QRIRALRENLDELSRNMEMLN-GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555554 3 44466666666666666666666666666555554443
No 396
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=25.64 E-value=3.5e+02 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELERSIS 93 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le~~i~ 93 (133)
.++......+.+.-.+++.....+..+++
T Consensus 100 ~~~e~~RK~~ke~~~k~~k~~~~a~~~le 128 (234)
T cd07652 100 KTVEKSRKSIKETGKRAEKKVQDAEAAAE 128 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333
No 397
>PRK14144 heat shock protein GrpE; Provisional
Probab=25.60 E-value=3.5e+02 Score=21.66 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 87 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 87 ~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
..++-+..|-.-.+.+++++....... + ..++.+-.-+|+|++
T Consensus 93 a~~~~~~~LLpV~DnLerAl~~~~~~~--~-~~i~~Gv~mi~k~l~ 135 (199)
T PRK14144 93 GVEKLISALLPVVDSLEQALQLADKNS--D-PSMHEGLELTMKLFL 135 (199)
T ss_pred HHHHHHHHHhhHHhHHHHHHHcccccc--h-hHHHHHHHHHHHHHH
Confidence 344455555666666666665432211 1 234555555555553
No 398
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.30 E-value=2.1e+02 Score=24.38 Aligned_cols=14 Identities=14% Similarity=0.098 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhc
Q psy4582 97 EKETELDEILAVLT 110 (133)
Q Consensus 97 ~k~~Ele~~l~~l~ 110 (133)
...+.|-.+.+.|+
T Consensus 58 GsLQDLa~saEqLe 71 (283)
T PF11285_consen 58 GSLQDLAQSAEQLE 71 (283)
T ss_pred HHHHHHHHHHHhhc
Confidence 34455555555554
No 399
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.26 E-value=6e+02 Score=24.22 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcC
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE-----RSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le-----~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
|.+.....+.+.+.+.....++..-+.+++....+++.++.... ..-+.++....++++.+.+++.
T Consensus 525 l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444332 2224455556666677777753
No 400
>KOG1760|consensus
Probab=24.83 E-value=3e+02 Score=20.92 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 79 ERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 79 ~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..|+.-+..+++.+..+..+.+-+...+..|
T Consensus 84 ~~LEe~ke~l~k~i~~les~~e~I~~~m~~L 114 (131)
T KOG1760|consen 84 DQLEEKKETLEKEIEELESELESISARMDEL 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555544
No 401
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.82 E-value=3.5e+02 Score=21.34 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQ--KVQAQEEIEILKQTENEL 67 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~--~~~~~aEle~L~~tq~eL 67 (133)
.++.||.+-+..|.+-. ...++.++...+..-+.|
T Consensus 106 r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 106 GLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665533 445555555555543333
No 402
>PF15497 SNAPc19: snRNA-activating protein complex subunit 19, SNAPc subunit 19
Probab=24.76 E-value=2.4e+02 Score=19.89 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELERSIS 93 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~ 93 (133)
|++.+.-|.+=.++|.+-+.+|+-|.=.|...+.
T Consensus 2 L~~eE~~L~~i~~~i~~qLN~LkVEEL~LkSmi~ 35 (91)
T PF15497_consen 2 LKAEEEKLLKILPKIQDQLNRLKVEELHLKSMIS 35 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888777766665543
No 403
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.72 E-value=2.9e+02 Score=22.87 Aligned_cols=16 Identities=19% Similarity=-0.058 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENEL 67 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL 67 (133)
+..+|.+.|++.-.+|
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555444433
No 404
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=24.42 E-value=5.2e+02 Score=25.27 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
.+.|+...+-|+.....+.+.+.+|..+...+++.+..++.+..+..
T Consensus 746 ~~~l~~~a~~L~~~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~ 792 (902)
T TIGR03683 746 EDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELK 792 (902)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666777777777777788888877777665443
No 405
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=24.33 E-value=4e+02 Score=21.80 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=3.9
Q ss_pred CCCCCCchHH
Q psy4582 20 SQGGTITDEH 29 (133)
Q Consensus 20 ~~~gti~ee~ 29 (133)
-++-|++++.
T Consensus 10 K~~Vs~Se~~ 19 (228)
T PRK06800 10 KNSVSFSEET 19 (228)
T ss_pred CCcceeccce
Confidence 3333444433
No 406
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.32 E-value=2.7e+02 Score=19.83 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+...++.++.....++..+..++.....++..+...
T Consensus 77 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 77 QLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666665544
No 407
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.28 E-value=7.4e+02 Score=24.89 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy4582 27 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 86 (133)
Q Consensus 27 ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~ 86 (133)
-|.+|+.|-+|=..+ .+-++.+.+.++....-.+.=..|+.....=.+++.+|.+|..
T Consensus 986 nekLr~rL~q~eaeR--~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~ 1043 (1480)
T COG3096 986 NEKLRQRLEQAEAER--TRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQ 1043 (1480)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456777777665554 3344556666666655555555666666655566666655543
No 408
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.08 E-value=4.6e+02 Score=22.41 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++.|++..+.|..-=+..-..+...-+|++.|-..+.+=.-.++.|=++-++|
T Consensus 221 ~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSElhVRHVaIEQLlKn~skl 273 (285)
T PF06937_consen 221 LDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASELHVRHVAIEQLLKNCSKL 273 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34455555555555555555555556666666666666666666665555544
No 409
>PRK04654 sec-independent translocase; Provisional
Probab=24.05 E-value=4e+02 Score=21.79 Aligned_cols=14 Identities=21% Similarity=0.269 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEI 57 (133)
Q Consensus 44 ~rL~e~~~~~~aEl 57 (133)
++++..++....|+
T Consensus 37 rk~R~~~~~vk~El 50 (214)
T PRK04654 37 RRARMQWDSVKQEL 50 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 410
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=23.91 E-value=3.4e+02 Score=20.87 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.++.+...|.-++.-...|...+..++..++-.
T Consensus 139 ~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 139 EQQQLQQEILALEQRLQRCRQAIEKIEEQIQRR 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777776665544
No 411
>KOG1103|consensus
Probab=23.89 E-value=2.9e+02 Score=24.85 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
.+|+...+.-.+..+.|+++++..++.-|+.--..|+.++.-|++-...+
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 34555555555555566666655555555555555555544444443333
No 412
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.85 E-value=3.9e+02 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMN--EQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 33 SLlsAV~dKLr~rL~--e~~~~~~aEle~L~~tq~eL~ 68 (133)
.++.||-+-+-+|.+ ......+.++..-+...+.|.
T Consensus 116 R~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~ 153 (234)
T cd07664 116 RLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQ 153 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666655 334455566666666666664
No 413
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=23.74 E-value=2.9e+02 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKI 42 (133)
Q Consensus 32 ~SLlsAV~dKL 42 (133)
+||.+.+.+-+
T Consensus 27 ASLq~i~k~tv 37 (106)
T PF03528_consen 27 ASLQAILKETV 37 (106)
T ss_dssp -----------
T ss_pred HHHHHHHhhhh
Confidence 35555544444
No 414
>KOG1003|consensus
Probab=23.70 E-value=4e+02 Score=21.67 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|.+.+......+.+|.+..+.+.......+..|..+-.--.+.++........++-|++-+.+|
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Ddl 177 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDL 177 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHH
Confidence 34455555666666666666666666666666665555555555555444444444444444444
No 415
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=23.68 E-value=5.4e+02 Score=24.91 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 58 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 58 e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
+.++...+.|..+...+.+.+.+|..+...+++.+..++.+.....
T Consensus 701 ~~l~~~~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 746 (865)
T PRK00252 701 ALLKELAALLKAKPSELPERVEALLEELKELEKELEQLKAKLAAAA 746 (865)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777777777777777777776655443
No 416
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=23.63 E-value=3.4e+02 Score=20.83 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 27 DEHIKMSLKSAVEDKIRRKMNEQK 50 (133)
Q Consensus 27 ee~ir~SLlsAV~dKLr~rL~e~~ 50 (133)
-+.|+.+|..+|+.|.---+-..|
T Consensus 6 kelI~~~lea~VnKr~aVSl~DRF 29 (146)
T PF05852_consen 6 KELIKSALEAEVNKRAAVSLFDRF 29 (146)
T ss_pred HHHHHHHHHHHHHHhhhhhHHhcc
Confidence 466778888888877665544433
No 417
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.62 E-value=4.5e+02 Score=22.15 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 47 NEQKVQAQEEIEIL-------KQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 47 ~e~~~~~~aEle~L-------~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
++.|.+...||+.+ ..-...++.-..+=...|-.|-.++......+..++.+.+-|+..++.|..
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555666544 445556777777778888899999999999999999999999998888753
No 418
>PF05926 Phage_GPL: Phage head completion protein (GPL); InterPro: IPR009225 This entry is represented by Bacteriophage P2, GpL. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage head completion protein (GpL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids [].; GO: 0019069 viral capsid assembly
Probab=23.62 E-value=3.2e+02 Score=20.52 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.5
Q ss_pred CCCchHHHHHHHHHHHH
Q psy4582 23 GTITDEHIKMSLKSAVE 39 (133)
Q Consensus 23 gti~ee~ir~SLlsAV~ 39 (133)
|+++++.++..|+.|+.
T Consensus 24 ~~vt~~rl~~al~~A~~ 40 (140)
T PF05926_consen 24 GTVTPERLRQALLAAMA 40 (140)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999999887
No 419
>KOG0018|consensus
Probab=23.61 E-value=7.1e+02 Score=25.28 Aligned_cols=60 Identities=28% Similarity=0.367 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.+.+.+....++.+...+++|..-...+....+++....+.++.-......+..++...+
T Consensus 408 E~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 408 EARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Confidence 344444444444444444445444444445555444444444444444444444443333
No 420
>KOG0289|consensus
Probab=23.50 E-value=5.8e+02 Score=23.42 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCcccccc
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK-TEVDVDEAVTT 123 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~-~~~dVDeaV~~ 123 (133)
-.++..+|.|=++++--+=.|++--+-.+.++.--==+.+....+|.+|.....|..++|.+++.. +.+. -|||.+
T Consensus 70 PalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~-peav~~ 146 (506)
T KOG0289|consen 70 PALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIV-PEAVPS 146 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCccccccc-cccccc
Confidence 334445566666655333333333333333333333345666778888888888888888888643 3332 455544
No 421
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.41 E-value=4.3e+02 Score=21.92 Aligned_cols=7 Identities=43% Similarity=0.581 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy4582 102 LDEILAV 108 (133)
Q Consensus 102 le~~l~~ 108 (133)
|++.++.
T Consensus 78 Le~iLe~ 84 (304)
T PF02646_consen 78 LERILED 84 (304)
T ss_pred HHHHHHH
Confidence 3444444
No 422
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.36 E-value=5e+02 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFE 79 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~ 79 (133)
.++.|.++|++-.++|+.--.+|+..+.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666655554444444333
No 423
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=3.2e+02 Score=20.30 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+....+|+.-...++..+.+|+...+.+.+.+.+|.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777777777777777666664
No 424
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=23.07 E-value=3.8e+02 Score=21.13 Aligned_cols=29 Identities=3% Similarity=0.012 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKL 74 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL 74 (133)
.+..+++...-.......+.+|.+-+.++
T Consensus 111 vk~~f~~R~~a~~~~q~a~~~l~kkr~~~ 139 (224)
T cd07623 111 IKDVFHERVKVWQNWQNAQQTLTKKREAK 139 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454555555555555555555543
No 425
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.91 E-value=4.2e+02 Score=21.58 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILK 61 (133)
Q Consensus 46 L~e~~~~~~aEle~L~ 61 (133)
|...+++++.|+..||
T Consensus 59 l~~ql~~lq~ev~~Lr 74 (263)
T PRK10803 59 LQQQLSDNQSDIDSLR 74 (263)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 426
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=22.91 E-value=5.8e+02 Score=23.19 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFER 80 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~r 80 (133)
.+|+++.....+.|+.+=+..-+.|-+.++.|+..++|
T Consensus 271 IqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vAR 308 (497)
T COG3851 271 IQRLRELNQRLQKELARNRALAEQLISTEESIRKDVAR 308 (497)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 35688999999999999999999999999999888765
No 427
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=22.85 E-value=4.1e+02 Score=21.43 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 26 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEI---------EILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 26 ~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEl---------e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
++..=.+..+..+.+.|...+.+.+.....+. ...+..++++...+..+...+..++.=+..-+..|
T Consensus 71 ~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~c 146 (258)
T cd07655 71 SEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAAC 146 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666665555544331 12233344444444444444444444444433333
No 428
>PRK12495 hypothetical protein; Provisional
Probab=22.73 E-value=1.4e+02 Score=24.64 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGK 71 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~ 71 (133)
+.=|.||+|++++-...-+..+++-+.|.+|-
T Consensus 7 EaEREkLREKye~d~~~R~~~~~ma~lL~~ga 38 (226)
T PRK12495 7 EAEREKLREKYEQDEQKREATERMSELLLQGA 38 (226)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhc
Confidence 34578899999999999999999988888875
No 429
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.66 E-value=3.2e+02 Score=20.17 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQG 70 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G 70 (133)
|..|+..++.++-|..+++.++.+|...
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rr 54 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRR 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 430
>KOG1029|consensus
Probab=22.65 E-value=4e+02 Score=26.45 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+++....+++.|+++|.---..|...-..++--+..-..+.+++.+.++.+-..+.++...|.++
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 431
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.61 E-value=5.8e+02 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 95 LKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 95 l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
+.....+++..-..++. +.||++.
T Consensus 450 ~~~~~~~i~~l~~~L~~-g~VNm~a 473 (569)
T PRK04778 450 FFEVSDEIEALAEELEE-KPINMEA 473 (569)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCHHH
Confidence 34444455555555554 6666554
No 432
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=22.56 E-value=2.7e+02 Score=19.17 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVD 116 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~d 116 (133)
..+-++.|...=+.|-+|.-.|++-|...++=.+-...--..|....+.++..+.........+
T Consensus 12 fE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~~~~~~~~~~~ 75 (81)
T COG1722 12 FEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLLEEDEEEDPEE 75 (81)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 4555666666677788899999998888887766666655666666666666666655443333
No 433
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.56 E-value=2e+02 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..-+.|+.-+..+....+.|-.++++|+..|+.|+
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LR 233 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLR 233 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555553
No 434
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=22.51 E-value=25 Score=23.17 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=5.5
Q ss_pred chhhhhhcC
Q psy4582 125 APIYKQIVN 133 (133)
Q Consensus 125 apLy~QLl~ 133 (133)
+||++||++
T Consensus 37 SPLF~~iL~ 45 (58)
T PF09045_consen 37 SPLFNQILT 45 (58)
T ss_dssp -HHHHHHHH
T ss_pred ChHHHHHHH
Confidence 577777763
No 435
>KOG3119|consensus
Probab=22.46 E-value=4.4e+02 Score=21.68 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
....-++..++....=+..+.++..-+..|++|.+.+...+..|++...-+...+...
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456666666666667788888888999999999999999988888887777665
No 436
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=22.28 E-value=2.9e+02 Score=19.45 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy4582 90 RSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 90 ~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
......+....+++.++..+..
T Consensus 56 ~~~~~~~~~l~~i~~AL~ri~~ 77 (110)
T TIGR02420 56 RTRDRERKLIKKIDEALKRIED 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344556667788899988853
No 437
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.90 E-value=1.4e+02 Score=24.44 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 25 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 25 i~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
|..+.+. ..++|+.+=|+.|=. +...-+..+...=.+|....+.|..-|+.+...-+.+......+.+-...+..
T Consensus 10 vdP~kLn-~tL~ala~Al~GrG~----~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~ 84 (267)
T PF11887_consen 10 VDPAKLN-ATLSALATALDGRGE----QLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTT 84 (267)
T ss_pred CCHHHHH-HHHHHHHHHHcCcch----hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334333 345666666655421 22333444445555555566666666666666666655555555555555555
Q ss_pred HHHHh
Q psy4582 105 ILAVL 109 (133)
Q Consensus 105 ~l~~l 109 (133)
..+.+
T Consensus 85 ~s~tL 89 (267)
T PF11887_consen 85 TSRTL 89 (267)
T ss_pred HHHHH
Confidence 55544
No 438
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.85 E-value=2e+02 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=2.0
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q psy4582 67 LNQGKFKLARMFERIDKEK 85 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~ 85 (133)
|+.--++|+|+++.|..|-
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 439
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.80 E-value=4.5e+02 Score=21.54 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4582 10 LDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE 89 (133)
Q Consensus 10 ~~~~~~~~~~~~~gti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le 89 (133)
.+.+.++..-++.++|....--.||+..|... |.|++.....++.|+..++.+-. .++.++..|++..-.|=
T Consensus 56 ~~~~~~~g~~sp~ss~~~~~~~~siLpIVtsQ-RDRFR~Rn~ELE~elr~~~~~~~-------~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 56 IPNSGRSGSLSPTSSIIGGGGDSSILPIVTSQ-RDRFRQRNAELEEELRKQQQTIS-------SLRREVESLRADNVKLY 127 (248)
T ss_pred ccCccccCCCCCCccCCCCCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q psy4582 90 RSISFLK 96 (133)
Q Consensus 90 ~~i~~l~ 96 (133)
.-+.-|+
T Consensus 128 EKiRylq 134 (248)
T PF08172_consen 128 EKIRYLQ 134 (248)
T ss_pred HHHHHHh
No 440
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.64 E-value=4e+02 Score=20.90 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
...+...+.++..........+..
T Consensus 102 rK~~~~~~~k~~k~~~~~~~~l~K 125 (236)
T cd07651 102 RKKIQSHMEKLLKKKQDQEKYLEK 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 441
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=21.63 E-value=52 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 63 TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 63 tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
.|.+.-.|.+.+=+-+++++++.-.|....+-|++|+++..+.++
T Consensus 32 ~q~~~s~~sp~~f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~ 76 (106)
T PF12443_consen 32 SQKDDSSGSPGIFDKIREGEQMIQKLGEQTEELKDKVQEFSKRIE 76 (106)
T ss_pred ccccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 344566788889999999999999999999999999888877764
No 442
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=21.63 E-value=3.8e+02 Score=20.63 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHH-------HHHHHH--HH
Q psy4582 17 SSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENE-------LNQGKF-------KLARMF--ER 80 (133)
Q Consensus 17 ~~~~~~gti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~e-------L~~G~~-------kL~~~i--~r 80 (133)
.++-+.+.|-.++..+.-.++=-+.+..+-...+..++.++..+...=++ -..++. ++.... ..
T Consensus 27 ia~vn~~~i~~~~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~k~e~~~~~~~~~~~~~~k~ 106 (170)
T COG2825 27 IAIVNLGRIFQESPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQ 106 (170)
T ss_pred eeeecHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566666666664333333334444444444455555544422111 111111 122222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCcc-ccccCch
Q psy4582 81 IDKEKAELERSISFLKEKETELDEILAVLTEKT--EVDVDE-AVTTTAP 126 (133)
Q Consensus 81 Le~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~--~~dVDe-aV~~tap 126 (133)
-+-++.--.+..+....-.+++.+++...-..+ ++.+|. +|+...|
T Consensus 107 ~~~~~~~~~~~~e~~~~~~~~i~~ai~~~a~~~gy~~vl~~~~V~y~~~ 155 (170)
T COG2825 107 QEYEKDLNRREAEEEQKLLEKIQRAIESVAEKGGYSLVLDSNAVLYAKP 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEecCCchhccCC
Confidence 233444445556666666777777777764444 344443 4444333
No 443
>KOG4674|consensus
Probab=21.62 E-value=9.2e+02 Score=25.91 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLAR----MFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~----~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
|...++.+.++..+|+.+-..|..-+.-++. .-.++++..+.|..++..++.+.++...-+..+.+.-+.++-+
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~ 841 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4445555555555555444433333222222 2234556667777777777777777776666665554444433
No 444
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.55 E-value=2e+02 Score=22.45 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
||.=-=++.||.. ++.|+.+..||..|--.|...+ .++++..
T Consensus 13 IERnalLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 13 IERNALLESELDE-KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCH----------------------
T ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3443445666644 6677777777777777777777 5555543
No 445
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=21.53 E-value=4.4e+02 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=12.6
Q ss_pred hccccccCCCCCCCCCCCCCCch
Q psy4582 5 LTRWTLDQEVGGSSPSQGGTITD 27 (133)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~gti~e 27 (133)
|..-.|-.|.++++|+.+|-...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~md~~ 32 (195)
T PRK15361 10 LPAPSLLTPSSTPSPSGEGMGTE 32 (195)
T ss_pred ecCccccCCCCCCCCCcccCCHH
Confidence 33333444566677777765444
No 446
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.52 E-value=3.6e+02 Score=20.28 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 84 EKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 84 e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
....|+.++.....|+..|+..+.-+
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444
No 447
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.49 E-value=3.4e+02 Score=20.05 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENEL 67 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL 67 (133)
.++..+...+..-+.|
T Consensus 121 ~~~~~l~~k~~~~~kl 136 (218)
T cd07596 121 SLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 448
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.33 E-value=8.3e+02 Score=24.38 Aligned_cols=12 Identities=25% Similarity=0.244 Sum_probs=4.2
Q ss_pred HHhhHHHHHHHH
Q psy4582 67 LNQGKFKLARMF 78 (133)
Q Consensus 67 L~~G~~kL~~~i 78 (133)
|..-...++..+
T Consensus 272 l~~~~~~~~~~~ 283 (1201)
T PF12128_consen 272 LNADEQQLEQEQ 283 (1201)
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 449
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=21.25 E-value=2.3e+02 Score=18.03 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 39 EDKIRRKMNEQKVQAQEEIEILKQT 63 (133)
Q Consensus 39 ~dKLr~rL~e~~~~~~aEle~L~~t 63 (133)
.+-|++||..+=..+..|++.|++.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888754
No 450
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.21 E-value=5.3e+02 Score=22.06 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 55 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 55 aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.+...--.+=..|...+..|...|...+.--..++.. +.....-++.++..|+.
T Consensus 329 ~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 329 EEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443333333333 56666666667766653
No 451
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.18 E-value=4.2e+02 Score=20.91 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=5.6
Q ss_pred cccccCchhhhhh
Q psy4582 119 EAVTTTAPIYKQI 131 (133)
Q Consensus 119 eaV~~tapLy~QL 131 (133)
..+.+-..+++||
T Consensus 108 ~l~~Gv~mi~k~l 120 (185)
T PRK14139 108 KLREGVELTLKQL 120 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 452
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.12 E-value=5.5e+02 Score=22.25 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 59 ILKQTENELNQGKFKLARMFE----RIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 59 ~L~~tq~eL~~G~~kL~~~i~----rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.+...+..+..-...|..++. ....+.+.+++....|.++...++..+..+
T Consensus 314 ~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 314 QLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444433 334444556666666666666666666555
No 453
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=21.06 E-value=4.1e+02 Score=20.82 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV 115 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~ 115 (133)
.++++-.-+.+..++.+.+...+..+.....++.+.+..+...+..
T Consensus 33 k~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (177)
T PF03234_consen 33 KHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEA 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4556666777788888888899999999999999999888766443
No 454
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.02 E-value=4.8e+02 Score=21.54 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 36 SAVEDKIRRKMNEQKVQAQEEIEILKQTE-NELNQGKFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 36 sAV~dKLr~rL~e~~~~~~aEle~L~~tq-~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
..+++.|...+-.-+.+...+++..|.-+ .+-...+..++..+..|+.-+..-++.|...+..
T Consensus 83 e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A 146 (252)
T cd07675 83 EVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKA 146 (252)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556678888888888776 6666667777777777777666666666544433
No 455
>KOG0241|consensus
Probab=20.97 E-value=8.4e+02 Score=25.18 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++.+.+++.+......+++ +....+..-+++++....=++.....++..+..+..-.+|..+.++.+
T Consensus 364 rvirElReEve~lr~qL~~--ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 364 RVIRELREEVEKLREQLEQ--AEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred HHHHHHHHHHHHHHHHHhh--hhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544443333 222333334444444444445556777777877777777777776665
No 456
>KOG0249|consensus
Probab=20.80 E-value=8.1e+02 Score=24.08 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILK-------------------QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~-------------------~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
+++.+......+|++..+ ..+--|+.+.+++++ .++|.++.+.+.+++..+....+.+..
T Consensus 166 ~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~-kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALED-KNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhcC
Q psy4582 105 ILAVLTE 111 (133)
Q Consensus 105 ~l~~l~~ 111 (133)
-+++|.+
T Consensus 245 d~E~Lr~ 251 (916)
T KOG0249|consen 245 DIEDLRG 251 (916)
T ss_pred hHHHHHH
No 457
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.63 E-value=3.6e+02 Score=19.98 Aligned_cols=55 Identities=29% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 56 EIEILKQTENELNQGKFKLARMF-ERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i-~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
....+...-..|.....++..+. ..++.+.+.|=-...-+..|+......|..|.
T Consensus 56 ~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 56 ELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 34444455555555566665444 55666666666666666777777777777664
No 458
>KOG2077|consensus
Probab=20.58 E-value=3.7e+02 Score=25.69 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
|...|..|.+.|+--+..|-.-+-+|..|+++|+.....-++....|++.|.+++
T Consensus 309 ENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elE 363 (832)
T KOG2077|consen 309 ENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELE 363 (832)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 459
>PF15294 Leu_zip: Leucine zipper
Probab=20.52 E-value=5.3e+02 Score=21.84 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q psy4582 35 KSAVEDKIRRKMNEQKVQAQEEIEI----------LKQTENELNQGKFKLARMFERIDKEKAELER-------SISFLKE 97 (133)
Q Consensus 35 lsAV~dKLr~rL~e~~~~~~aEle~----------L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~-------~i~~l~~ 97 (133)
++.++++=--..-+.+...++-... |.-.... .|.+-+..+|.+|+.|.+.+.. .+..+-+
T Consensus 83 iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~--g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~ 160 (278)
T PF15294_consen 83 ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNES--GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALD 160 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhc
Q psy4582 98 KETELDEILAVLT 110 (133)
Q Consensus 98 k~~Ele~~l~~l~ 110 (133)
....++..|.+++
T Consensus 161 Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 161 EKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHH
No 460
>PRK06328 type III secretion system protein; Validated
Probab=20.42 E-value=4.5e+02 Score=20.97 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=44.1
Q ss_pred CCCCCCCchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHH
Q psy4582 19 PSQGGTITDEHIKMSLKSA--VEDKIRRKMNEQKVQAQEEIEILKQT--ENELNQGKFKLARMFERIDKEKAE 87 (133)
Q Consensus 19 ~~~~gti~ee~ir~SLlsA--V~dKLr~rL~e~~~~~~aEle~L~~t--q~eL~~G~~kL~~~i~rLe~e~~~ 87 (133)
+.++.-|=......++++| +-++.+.+.....+..++|.+.++.. ++-...|..+-...+..|..+...
T Consensus 13 ~~~~~~vl~~~~~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~ 85 (223)
T PRK06328 13 VAPNKKVLSPEAFSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQK 85 (223)
T ss_pred cCCccccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566553 66788888889999999999999954 555666666555555555444433
No 461
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.33 E-value=3e+02 Score=18.86 Aligned_cols=54 Identities=31% Similarity=0.403 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDK---EKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~---e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.-.+...-++|+.-...+...|..+.. +...+...+..++.+..+++..+..+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444 23444444444444444444444433
No 462
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.17 E-value=3.1e+02 Score=18.99 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 87 ELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 87 ~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+.-..+..++-.-++|-..|+..
T Consensus 38 EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 38 EIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 33344555555566666666555
No 463
>KOG3088|consensus
Probab=20.10 E-value=2.1e+02 Score=24.69 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhHHH
Q psy4582 59 ILKQTENELNQGKFK 73 (133)
Q Consensus 59 ~L~~tq~eL~~G~~k 73 (133)
.+...|.||.+.++.
T Consensus 61 ~~~~kq~eL~~rqeE 75 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEE 75 (313)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 464
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.03 E-value=5.9e+02 Score=22.21 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...|..+-..+...+..++.+..+++..+..+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666665
Done!