Query psy4582
Match_columns 133
No_of_seqs 69 out of 71
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:39:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iv1_A Tumor susceptibility ge 99.9 2E-24 6.8E-29 148.2 9.4 75 33-107 3-77 (78)
2 2p22_A Suppressor protein STP2 99.7 1.4E-16 4.7E-21 123.3 8.8 102 31-133 17-119 (174)
3 2jee_A YIIU; FTSZ, septum, coi 96.1 0.1 3.4E-06 35.6 10.0 68 33-100 6-79 (81)
4 2v66_B Nuclear distribution pr 94.5 0.83 2.8E-05 32.6 11.0 64 43-106 5-72 (111)
5 1cii_A Colicin IA; bacteriocin 92.2 1.4 4.9E-05 38.8 10.8 122 4-130 313-440 (602)
6 2p22_A Suppressor protein STP2 90.1 2 6.7E-05 32.8 8.6 73 38-110 13-90 (174)
7 2wt7_B Transcription factor MA 87.8 5 0.00017 27.5 9.0 61 41-102 28-88 (90)
8 3oja_B Anopheles plasmodium-re 87.6 8 0.00027 32.6 11.6 29 76-104 537-565 (597)
9 3oja_B Anopheles plasmodium-re 87.5 5.6 0.00019 33.5 10.7 53 58-110 526-578 (597)
10 2v71_A Nuclear distribution pr 87.2 8.6 0.0003 29.5 11.4 62 46-107 61-126 (189)
11 2pnv_A Small conductance calci 86.6 1.9 6.4E-05 25.9 5.2 38 72-109 5-42 (43)
12 2v71_A Nuclear distribution pr 84.4 12 0.00042 28.7 11.6 66 41-106 74-139 (189)
13 1d7m_A Cortexillin I; coiled-c 84.1 8.5 0.00029 26.7 10.5 59 47-105 3-61 (101)
14 3ghg_A Fibrinogen alpha chain; 83.5 5.5 0.00019 35.3 8.8 41 66-106 114-154 (562)
15 3he5_A Synzip1; heterodimeric 82.9 5.8 0.0002 23.9 7.4 44 49-92 4-47 (49)
16 2v66_B Nuclear distribution pr 82.5 11 0.00037 26.7 11.6 67 40-106 20-86 (111)
17 2w83_C C-JUN-amino-terminal ki 82.0 9.2 0.00032 25.6 9.4 65 46-110 7-71 (77)
18 3bas_A Myosin heavy chain, str 81.9 9.2 0.00031 25.5 11.1 68 43-110 16-83 (89)
19 1nkp_B MAX protein, MYC proto- 81.9 4.4 0.00015 26.4 6.0 77 31-111 2-82 (83)
20 2fxo_A Myosin heavy chain, car 81.3 12 0.00041 26.4 11.8 34 75-108 68-101 (129)
21 3ghg_A Fibrinogen alpha chain; 80.8 8 0.00027 34.3 8.8 43 73-119 114-156 (562)
22 3hnw_A Uncharacterized protein 80.7 14 0.00047 26.7 11.8 34 76-109 96-129 (138)
23 2k48_A Nucleoprotein; viral pr 79.9 14 0.00046 26.2 8.7 48 62-109 46-101 (107)
24 3he5_B Synzip2; heterodimeric 79.7 7.5 0.00026 23.6 5.9 36 57-92 12-47 (52)
25 3u85_B Histone-lysine N-methyl 77.6 1.1 3.7E-05 23.0 1.4 18 6-23 1-18 (21)
26 3he4_A Synzip6; heterodimeric 77.2 10 0.00034 23.4 6.0 36 71-106 19-54 (56)
27 1go4_E MAD1 (mitotic arrest de 76.7 11 0.00037 26.3 6.9 43 77-119 13-55 (100)
28 3oja_A Leucine-rich immune mol 76.1 31 0.0011 28.4 11.6 8 39-46 376-383 (487)
29 3na7_A HP0958; flagellar bioge 76.1 25 0.00085 27.2 10.8 65 46-110 23-87 (256)
30 1nkp_A C-MYC, MYC proto-oncoge 74.6 16 0.00055 24.3 8.4 82 26-111 1-87 (88)
31 2dfs_A Myosin-5A; myosin-V, in 74.5 33 0.0011 32.3 11.5 24 73-96 1020-1043(1080)
32 3q8t_A Beclin-1; autophagy, AT 73.6 18 0.00063 24.5 8.3 26 74-99 23-48 (96)
33 1i84_S Smooth muscle myosin he 73.5 21 0.0007 33.6 9.9 25 77-101 914-938 (1184)
34 3hnw_A Uncharacterized protein 71.2 26 0.00089 25.2 10.6 17 86-102 113-129 (138)
35 2akf_A Coronin-1A; coiled coil 70.0 12 0.00041 20.8 4.8 27 73-99 3-29 (32)
36 1gmj_A ATPase inhibitor; coile 69.8 23 0.00078 24.0 9.5 51 47-104 29-79 (84)
37 2ic6_A Nucleocapsid protein; h 69.6 22 0.00075 23.7 7.7 53 57-109 4-71 (78)
38 3oja_A Leucine-rich immune mol 66.9 52 0.0018 27.0 10.6 12 74-85 419-430 (487)
39 2dfs_A Myosin-5A; myosin-V, in 66.8 58 0.002 30.7 11.4 34 73-106 1013-1046(1080)
40 1wt6_A Myotonin-protein kinase 66.7 26 0.0009 23.5 9.5 15 31-45 12-26 (81)
41 1t3j_A Mitofusin 1; coiled coi 64.1 29 0.00099 23.9 6.7 23 72-94 50-72 (96)
42 2l5g_B Putative uncharacterize 63.2 18 0.00063 21.5 4.8 33 74-106 7-39 (42)
43 1wt6_A Myotonin-protein kinase 62.8 32 0.0011 23.1 10.1 34 48-81 14-47 (81)
44 3vkg_A Dynein heavy chain, cyt 62.6 42 0.0014 35.5 10.2 38 73-110 2046-2083(3245)
45 2ic9_A Nucleocapsid protein; h 61.8 33 0.0011 23.8 6.6 20 90-109 52-71 (96)
46 3o0z_A RHO-associated protein 61.7 49 0.0017 24.9 10.7 39 57-95 29-67 (168)
47 1kd8_A GABH AIV, GCN4 acid bas 60.9 21 0.00073 20.5 5.5 27 73-99 5-31 (36)
48 2w6b_A RHO guanine nucleotide 60.7 28 0.00097 21.8 6.2 45 32-81 6-50 (56)
49 1dkg_A Nucleotide exchange fac 60.6 34 0.0012 25.9 7.3 60 72-132 67-131 (197)
50 1ez3_A Syntaxin-1A; three heli 60.1 36 0.0012 22.9 7.7 67 45-111 16-82 (127)
51 1c1g_A Tropomyosin; contractIl 59.1 46 0.0016 23.7 13.1 25 77-101 77-101 (284)
52 1m1j_B Fibrinogen beta chain; 58.5 90 0.0031 26.9 11.4 17 62-78 125-141 (464)
53 3t97_C Nuclear pore glycoprote 58.2 28 0.00096 22.2 5.4 38 74-111 17-54 (64)
54 2p22_C Protein SRN2; endosome, 58.2 58 0.002 24.7 9.1 53 51-103 65-117 (192)
55 1x79_B RAB GTPase binding effe 58.1 46 0.0016 23.5 8.3 30 81-110 36-65 (112)
56 3ljc_A ATP-dependent protease 58.0 21 0.00071 27.3 5.7 32 38-69 216-250 (252)
57 3he5_B Synzip2; heterodimeric 57.6 29 0.00099 21.0 6.0 35 52-86 14-48 (52)
58 1ci6_A Transcription factor AT 57.3 32 0.0011 21.4 6.6 23 80-102 34-56 (63)
59 1ic2_A Tropomyosin alpha chain 56.6 37 0.0013 21.9 10.9 67 42-108 4-73 (81)
60 1deq_A Fibrinogen (alpha chain 56.0 86 0.003 26.6 9.5 23 84-106 135-157 (390)
61 2w6b_A RHO guanine nucleotide 55.5 36 0.0012 21.4 7.4 37 73-109 14-50 (56)
62 1deq_A Fibrinogen (alpha chain 55.2 88 0.003 26.6 9.4 6 42-47 72-77 (390)
63 3qne_A Seryl-tRNA synthetase, 55.1 67 0.0023 27.7 8.9 22 47-68 39-60 (485)
64 2dq0_A Seryl-tRNA synthetase; 54.5 70 0.0024 27.0 8.9 20 49-68 39-58 (455)
65 2ve7_A Kinetochore protein HEC 53.8 29 0.00099 28.0 6.1 45 40-91 170-214 (315)
66 3l4f_A RHO guanine nucleotide 53.7 22 0.00076 22.7 4.3 26 70-95 22-47 (61)
67 3hh0_A Transcriptional regulat 52.6 11 0.00037 27.0 3.1 43 75-117 79-121 (146)
68 2w6a_A ARF GTPase-activating p 52.6 43 0.0015 21.4 7.4 40 49-88 21-60 (63)
69 3uul_A Utrophin; spectrin repe 52.5 44 0.0015 21.5 12.2 67 44-110 46-116 (118)
70 4ani_A Protein GRPE; chaperone 52.4 72 0.0025 24.7 8.0 62 69-132 84-150 (213)
71 1u00_A HSC66, chaperone protei 50.1 80 0.0027 23.8 9.5 84 24-109 115-207 (227)
72 3uun_A Dystrophin; triple heli 50.1 48 0.0016 21.2 12.4 68 44-111 46-117 (119)
73 3trt_A Vimentin; cytoskeleton, 50.1 45 0.0015 21.0 10.8 61 40-100 12-73 (77)
74 1fxk_C Protein (prefoldin); ar 50.0 49 0.0017 22.7 6.2 35 75-109 7-41 (133)
75 2aze_B Transcription factor E2 49.4 47 0.0016 22.9 5.9 34 71-104 8-41 (106)
76 1s94_A S-syntaxin; three helix 49.3 71 0.0024 23.0 8.5 68 44-111 46-113 (180)
77 1t3j_A Mitofusin 1; coiled coi 49.2 62 0.0021 22.3 8.1 32 38-69 44-75 (96)
78 1l8d_A DNA double-strand break 49.0 56 0.0019 21.7 10.9 64 46-109 22-97 (112)
79 2zvf_A Alanyl-tRNA synthetase; 48.9 34 0.0012 24.3 5.3 50 53-102 9-58 (171)
80 3a7p_A Autophagy protein 16; c 48.7 80 0.0027 23.4 11.8 41 69-109 96-137 (152)
81 1m1j_A Fibrinogen alpha subuni 47.9 1.4E+02 0.0048 26.0 11.0 45 63-107 112-156 (491)
82 2yy0_A C-MYC-binding protein; 47.3 40 0.0014 20.5 4.7 21 83-103 26-46 (53)
83 2zqm_A Prefoldin beta subunit 47.1 60 0.002 21.5 8.6 62 48-109 27-110 (117)
84 2zqm_A Prefoldin beta subunit 47.0 60 0.0021 21.5 6.4 35 76-110 70-104 (117)
85 3tnu_B Keratin, type II cytosk 46.5 71 0.0024 22.2 10.9 24 44-67 39-62 (129)
86 1yke_B RNA polymerase II holoe 45.3 80 0.0027 23.0 6.9 41 52-92 86-126 (151)
87 1kd8_B GABH BLL, GCN4 acid bas 45.3 42 0.0014 19.3 5.5 28 73-100 5-32 (36)
88 3tnu_A Keratin, type I cytoske 44.2 79 0.0027 22.0 10.7 21 45-65 42-62 (131)
89 2de0_X Alpha-(1,6)-fucosyltran 44.0 1.1E+02 0.0039 26.3 8.7 60 38-100 49-113 (526)
90 1kd8_A GABH AIV, GCN4 acid bas 43.9 45 0.0015 19.1 4.6 25 65-89 11-35 (36)
91 3m48_A General control protein 43.7 43 0.0015 18.9 4.3 23 74-96 5-27 (33)
92 1p9i_A Cortexillin I/GCN4 hybr 43.5 26 0.00088 19.2 2.9 23 74-96 4-26 (31)
93 1ykh_B RNA polymerase II holoe 43.3 37 0.0013 24.2 4.7 41 52-92 86-126 (132)
94 2ocy_A RAB guanine nucleotide 43.2 98 0.0034 22.9 10.6 27 62-88 48-74 (154)
95 1hjb_A Ccaat/enhancer binding 41.9 76 0.0026 21.2 8.2 43 69-111 36-78 (87)
96 3gpv_A Transcriptional regulat 41.9 89 0.003 22.0 7.1 41 70-110 89-129 (148)
97 1wle_A Seryl-tRNA synthetase; 41.8 1.7E+02 0.0058 25.2 11.6 19 49-67 78-96 (501)
98 4e81_A Chaperone protein DNAK; 41.6 1.1E+02 0.0038 23.1 10.0 84 24-109 118-210 (219)
99 2oxj_A Hybrid alpha/beta pepti 41.2 49 0.0017 18.8 4.5 24 73-96 5-28 (34)
100 3a7o_A Autophagy protein 16; c 41.2 75 0.0026 20.9 8.7 51 46-96 23-73 (75)
101 4fla_A Regulation of nuclear P 41.1 1E+02 0.0035 22.5 12.1 65 45-109 83-147 (152)
102 3c3g_A Alpha/beta peptide with 41.1 48 0.0016 18.7 4.5 25 73-97 4-28 (33)
103 3gp4_A Transcriptional regulat 40.8 92 0.0031 21.9 6.6 46 63-108 82-127 (142)
104 3gp4_A Transcriptional regulat 40.6 93 0.0032 21.8 8.5 29 76-104 88-116 (142)
105 2lf0_A Uncharacterized protein 40.1 55 0.0019 23.6 5.1 51 47-99 9-59 (123)
106 1l8d_A DNA double-strand break 39.3 82 0.0028 20.8 7.0 32 79-110 13-44 (112)
107 3efg_A Protein SLYX homolog; x 39.3 78 0.0027 20.6 6.8 33 72-104 31-63 (78)
108 2zdi_C Prefoldin subunit alpha 39.3 52 0.0018 23.3 5.0 41 72-112 12-55 (151)
109 2fxo_A Myosin heavy chain, car 39.1 96 0.0033 21.6 12.7 44 66-109 73-116 (129)
110 2wq1_A General control protein 38.9 53 0.0018 18.5 4.5 25 73-97 4-28 (33)
111 1ses_A Seryl-tRNA synthetase; 38.8 1.7E+02 0.0058 24.3 10.7 22 47-68 34-55 (421)
112 2jee_A YIIU; FTSZ, septum, coi 38.1 88 0.003 20.8 11.3 68 38-109 7-74 (81)
113 3lbx_A Spectrin alpha chain, e 38.1 1E+02 0.0036 21.7 7.2 62 44-105 98-160 (161)
114 3nr7_A DNA-binding protein H-N 37.9 88 0.003 20.8 5.8 49 71-123 33-81 (86)
115 3m9b_A Proteasome-associated A 37.8 49 0.0017 26.4 5.0 21 89-109 74-94 (251)
116 3c3f_A Alpha/beta peptide with 37.5 57 0.0019 18.5 4.5 24 73-96 5-28 (34)
117 4etp_A Kinesin-like protein KA 37.3 1E+02 0.0035 25.5 7.2 37 73-109 21-57 (403)
118 3u06_A Protein claret segregat 36.9 1.6E+02 0.0056 24.5 8.4 29 53-81 8-36 (412)
119 1nlw_A MAD protein, MAX dimeri 36.7 82 0.0028 20.4 5.2 30 77-106 48-77 (80)
120 3frt_A Charged multivesicular 36.5 96 0.0033 23.9 6.4 32 60-91 12-43 (218)
121 3m9b_A Proteasome-associated A 36.3 93 0.0032 24.8 6.4 40 57-96 56-95 (251)
122 2gd5_A Charged multivesicular 36.0 79 0.0027 23.1 5.7 6 67-72 48-53 (179)
123 2hy6_A General control protein 35.8 61 0.0021 18.4 4.4 25 73-97 5-29 (34)
124 3s9g_A Protein hexim1; cyclin 35.8 1.1E+02 0.0038 21.3 7.5 44 46-89 42-85 (104)
125 3s9g_A Protein hexim1; cyclin 35.1 1.1E+02 0.0039 21.2 8.8 45 65-109 33-77 (104)
126 1nha_A TFIIF-alpha, transcript 34.7 20 0.00068 24.2 1.9 25 11-35 3-29 (82)
127 3ljm_A Coil Ser L9C; de novo d 34.6 58 0.002 17.7 4.0 25 86-110 4-28 (31)
128 3ghg_B Fibrinogen beta chain; 34.4 2.3E+02 0.0077 24.5 10.3 68 42-109 100-189 (461)
129 2yy0_A C-MYC-binding protein; 33.3 82 0.0028 19.1 4.8 8 56-63 20-27 (53)
130 1vp7_A Exodeoxyribonuclease VI 33.3 19 0.00066 25.0 1.7 26 95-121 32-57 (100)
131 1m1j_A Fibrinogen alpha subuni 33.1 2.5E+02 0.0084 24.5 10.0 21 90-110 132-152 (491)
132 2dq0_A Seryl-tRNA synthetase; 33.1 2.2E+02 0.0075 23.9 10.6 20 43-62 40-59 (455)
133 3mq9_A Bone marrow stromal ant 32.9 2E+02 0.0067 23.4 11.6 28 62-89 397-424 (471)
134 2eqb_B RAB guanine nucleotide 32.8 1.2E+02 0.0041 20.8 8.3 7 97-103 83-89 (97)
135 2j69_A Bacterial dynamin-like 32.6 2.6E+02 0.0087 24.6 10.7 70 26-97 585-669 (695)
136 4fi5_A Nucleoprotein; structur 32.5 1.3E+02 0.0045 21.2 8.2 48 62-109 33-88 (113)
137 3lss_A Seryl-tRNA synthetase; 32.1 2.4E+02 0.0083 24.2 12.1 25 85-109 113-137 (484)
138 2kho_A Heat shock protein 70; 32.0 1.5E+02 0.0051 25.5 7.5 44 23-66 505-552 (605)
139 3swy_A Cyclic nucleotide-gated 31.9 84 0.0029 18.8 6.6 18 65-82 26-43 (46)
140 3gpv_A Transcriptional regulat 31.6 1.2E+02 0.0041 21.3 5.9 35 73-107 99-133 (148)
141 2wt7_A Proto-oncogene protein 31.4 92 0.0031 19.1 9.9 32 74-105 28-59 (63)
142 3kqg_A Langerin, C-type lectin 31.3 82 0.0028 21.9 5.0 11 54-64 5-15 (182)
143 4dnd_A Syntaxin-10, SYN10; str 31.3 1.3E+02 0.0045 21.2 6.0 36 59-94 64-99 (130)
144 3hd7_A Vesicle-associated memb 30.9 1.1E+02 0.0039 20.0 6.0 30 73-102 6-35 (91)
145 1uo4_A General control protein 30.8 76 0.0026 17.9 4.5 23 74-96 6-28 (34)
146 2ve7_C Kinetochore protein NUF 30.7 51 0.0018 25.8 4.0 59 48-110 145-203 (250)
147 1gd2_E Transcription factor PA 30.6 1.1E+02 0.0037 19.6 6.8 43 43-85 24-66 (70)
148 2bni_A General control protein 30.3 78 0.0027 17.9 4.5 24 73-96 5-28 (34)
149 3t97_C Nuclear pore glycoprote 30.3 82 0.0028 19.9 4.3 49 54-102 11-59 (64)
150 4g1a_A AQ-C16C19 peptide; heli 30.3 27 0.00092 19.2 1.6 25 74-98 5-29 (32)
151 3nmd_A CGMP dependent protein 30.2 1.2E+02 0.0039 19.8 7.3 25 85-109 42-66 (72)
152 1lwu_C Fibrinogen gamma chain; 29.7 1.6E+02 0.0056 24.0 7.0 25 81-105 31-55 (323)
153 3fav_A ESAT-6-like protein ESX 29.5 1.1E+02 0.0038 19.5 7.3 16 45-60 25-40 (101)
154 2zxx_A Geminin; coiled-coil, c 29.5 1.2E+02 0.0043 20.0 7.3 48 18-67 12-60 (79)
155 2dq3_A Seryl-tRNA synthetase; 29.5 66 0.0022 26.8 4.7 21 48-68 37-57 (425)
156 3tnf_B LIDA, RAS-related prote 29.4 14 0.00049 30.7 0.6 50 58-108 8-57 (384)
157 1n6j_G Calcineurin-binding pro 29.3 25 0.00085 19.8 1.4 10 20-29 4-13 (35)
158 1lwu_C Fibrinogen gamma chain; 29.2 1.3E+02 0.0045 24.5 6.4 33 77-109 20-52 (323)
159 1jnm_A Proto-oncogene C-JUN; B 28.6 1E+02 0.0035 18.7 7.3 19 78-96 31-49 (62)
160 3h6p_C ESAT-6-like protein ESX 28.3 1.2E+02 0.004 19.3 6.1 57 53-109 4-72 (96)
161 2efr_A General control protein 27.9 1.8E+02 0.0061 21.3 10.7 37 56-92 57-93 (155)
162 2j69_A Bacterial dynamin-like 27.2 2.7E+02 0.0092 24.4 8.5 41 40-83 629-669 (695)
163 3ra3_A P1C; coiled coil domain 27.0 78 0.0027 16.8 4.0 23 80-102 4-26 (28)
164 3qao_A LMO0526 protein, MERR-l 26.8 1.1E+02 0.0037 23.6 5.2 43 79-121 79-121 (249)
165 1quu_A Human skeletal muscle a 26.3 2E+02 0.0067 21.2 10.5 25 45-69 59-83 (250)
166 1fxk_C Protein (prefoldin); ar 26.1 1.6E+02 0.0054 20.0 6.6 30 73-102 12-41 (133)
167 4b4t_K 26S protease regulatory 25.9 1.8E+02 0.0062 24.3 6.8 50 62-111 42-91 (428)
168 2yko_A LINE-1 ORF1P; RNA-bindi 25.3 2E+02 0.0067 22.6 6.5 16 111-126 88-103 (233)
169 1hlo_A Protein (transcription 24.9 1.4E+02 0.0047 18.9 4.8 35 26-60 7-41 (80)
170 3mq7_A Bone marrow stromal ant 24.7 1.9E+02 0.0066 20.6 10.7 30 77-106 72-101 (121)
171 2w83_C C-JUN-amino-terminal ki 24.7 1.6E+02 0.0053 19.5 8.2 51 57-107 25-75 (77)
172 3oa7_A Head morphogenesis prot 24.1 2.5E+02 0.0086 21.7 7.8 45 46-97 28-72 (206)
173 3mq7_A Bone marrow stromal ant 24.0 2E+02 0.0068 20.5 11.9 37 71-107 73-109 (121)
174 2efl_A Formin-binding protein 24.0 2.3E+02 0.0078 21.2 12.4 21 38-58 95-115 (305)
175 1gmj_A ATPase inhibitor; coile 23.9 1.2E+02 0.004 20.4 4.3 17 80-96 62-78 (84)
176 1vf6_A PALS-1, PALS1-associate 23.1 16 0.00054 24.7 -0.2 9 125-133 37-45 (83)
177 2zdi_C Prefoldin subunit alpha 22.8 2E+02 0.0069 20.1 6.4 43 67-109 96-138 (151)
178 1grj_A GREA protein; transcrip 22.4 2E+02 0.007 20.5 5.8 23 88-110 51-73 (158)
179 3i00_A HIP-I, huntingtin-inter 22.4 2E+02 0.007 20.1 10.4 15 46-60 20-34 (120)
180 2xzr_A Immunoglobulin-binding 22.3 2E+02 0.007 20.0 6.2 50 55-104 52-104 (114)
181 4i0x_B ESAT-6-like protein MAB 21.9 1.7E+02 0.0058 18.9 8.9 26 84-109 61-86 (103)
182 3bas_A Myosin heavy chain, str 21.5 1.8E+02 0.006 19.0 9.9 28 71-98 58-85 (89)
183 2aze_B Transcription factor E2 21.5 1.6E+02 0.0055 20.1 4.8 17 49-65 7-23 (106)
184 3u06_A Protein claret segregat 21.4 3.5E+02 0.012 22.4 8.8 10 83-92 45-54 (412)
185 3efg_A Protein SLYX homolog; x 21.4 1.7E+02 0.0059 18.9 6.3 43 70-112 22-64 (78)
186 4b9q_A Chaperone protein DNAK; 21.1 3.9E+02 0.013 22.8 11.5 84 24-109 506-598 (605)
187 1q06_A Transcriptional regulat 21.1 2.1E+02 0.0071 19.6 6.4 38 74-111 77-114 (135)
188 3uux_B Mitochondrial division 21.0 3.1E+02 0.011 21.7 9.6 69 44-112 152-220 (242)
189 1sfc_A VAMP 2, protein (synapt 20.9 1.9E+02 0.0066 19.2 6.3 16 86-101 68-83 (96)
190 2pms_C Pneumococcal surface pr 20.7 2.4E+02 0.0081 20.2 6.1 26 86-111 64-89 (125)
191 3tkl_B LIDA protein, substrate 20.4 8 0.00027 30.9 -2.5 60 59-119 26-85 (267)
192 2fa5_A Transcriptional regulat 20.4 2E+02 0.0067 19.1 5.2 27 24-50 15-41 (162)
193 1a93_B MAX protein, coiled coi 20.3 1.3E+02 0.0044 17.0 4.7 22 46-67 5-26 (34)
No 1
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=148.18 Aligned_cols=75 Identities=45% Similarity=0.671 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 33 SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
||+|||+||||+|++|.|++++|||++|++|++||+.|+++|++||.+|++|++.|++||.+|++|.+||+++++
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=99.67 E-value=1.4e-16 Score=123.29 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 31 KMSLKSAVEDKIRRKMNEQKVQAQEEI-EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 31 r~SLlsAV~dKLr~rL~e~~~~~~aEl-e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
-.++++++.++++.++.+.+.+.++++ .+|++++++|..|..+|++|+.+|++++..|+.++..++.+...+++|++.
T Consensus 17 Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~- 95 (174)
T 2p22_A 17 LQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST- 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 458999999999999999999999999 899999999999999999999999999999999999999988888888765
Q ss_pred cCCCCCCCccccccCchhhhhhcC
Q psy4582 110 TEKTEVDVDEAVTTTAPIYKQIVN 133 (133)
Q Consensus 110 ~~~~~~dVDeaV~~tapLy~QLl~ 133 (133)
.+.+.||||++|++++|+||||++
T Consensus 96 ~~~~~~diD~~v~~~~~l~~Qll~ 119 (174)
T 2p22_A 96 SHVDDEDVNSIAVAKTDGLNQLYN 119 (174)
T ss_dssp SCCCSSCGGGTEECSSHHHHHHHH
T ss_pred CCCCCCChhhhhcCCcHHHHHHHH
Confidence 456789999999999999999974
No 3
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.05 E-value=0.1 Score=35.56 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 33 SLKSAVEDKIRRKM------NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 33 SLlsAV~dKLr~rL------~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
.+++.++.|+..-+ +..+..+..+..+|..-.++++.+...+.+...+|..|+..++..+..|-+|.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555666655442 334455556666666667778888888999999999999999999999888754
No 4
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.49 E-value=0.83 Score=32.58 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILK----QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~----~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.+.|+...+.+..|.++++ ..+.+-..-...|++.+..|...+..+..-+..|..+.+.++++-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 3455555566666666554 334444445555666666666666666666666666666655543
No 5
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=92.18 E-value=1.4 Score=38.79 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=85.8
Q ss_pred hhccccccCC---CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4582 4 LLTRWTLDQE---VGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNE---QKVQAQEEIEILKQTENELNQGKFKLARM 77 (133)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~gti~ee~ir~SLlsAV~dKLr~rL~e---~~~~~~aEle~L~~tq~eL~~G~~kL~~~ 77 (133)
|||.-.|+|. ..+.+|-....+-.+-=.-...-|=+++||+|+.+ .+.+.+..+.+++.+-+.+..-++.-++-
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~ 392 (602)
T 1cii_A 313 LLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDA 392 (602)
T ss_dssp HHTSCHHHHHHHTSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhhhhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555553 34455655544433332223344568999998764 55678888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhh
Q psy4582 78 FERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQ 130 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~Q 130 (133)
+..++.++..+++.+...+.|+.|-.+...+.+. |-++|..|+-.|+-
T Consensus 393 l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~a-----IKDAVkfTAdFykk 440 (602)
T 1cii_A 393 LNALLKEKENIRNQLSGINQKIAEEKRKQDELKA-----TKDAINFTTEFLKS 440 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHH-----HHHHHHHHHHHHHH
Confidence 9999999999999999999998888777665432 55566666665553
No 6
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=90.07 E-value=2 Score=32.76 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 38 VEDKIRRKMNEQKVQAQ-EEIEILKQTENEL----NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~-aEle~L~~tq~eL----~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+-++|+.-+.+...+.. -.++.+...|..| ++.+..+..+..+|+.++..++.+.+.+...++.++....+++
T Consensus 13 ~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 13 MLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555 5667777777766 9999999999999999999999999999999999999665553
No 7
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.83 E-value=5 Score=27.51 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
..|++++...+...+-.-.+... .+|......+...+..|..|...+...++.|+.+-+.|
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~-~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQK-HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999988888888887544 67888888888888888888888888888888776543
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.58 E-value=8 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..+.+++.+...+++.++..+++..++.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 33333334555555544444444444433
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.52 E-value=5.6 Score=33.52 Aligned_cols=53 Identities=8% Similarity=0.052 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 58 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 58 e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.+++..++++.-..+++..+.+|+...+...+.+..+++....+.+-+..+.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555556666665555555555555555555555555553
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.17 E-value=8.6 Score=29.55 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILK----QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 46 L~e~~~~~~aEle~L~----~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
|+...+++..|++.++ ..+.+...-...|++.+..|...+..+...|..|....+.+++..+
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444432 3333333444555555555555555555555555555555554443
No 11
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=86.60 E-value=1.9 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.-+-|++.+|..-...+++.+..|..|.+.|.+.++.|
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34668999999999999999999999999999888754
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.36 E-value=12 Score=28.71 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 41 KLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.++.++....+.....+..|..-=..|+.....+..-|+.|+...+.++..........+.++..+
T Consensus 74 ~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 74 ALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444466666666666677777777888888888888887777766666655544
No 13
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=84.12 E-value=8.5 Score=26.72 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
...++.++..++.=+-.+++|.+-+..++..++.|+.+...-++.+..++.+.++.=+.
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~ 61 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555666666666777777777777777777777777777777777777666654333
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.48 E-value=5.5 Score=35.31 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
||++-...|+..|..--....+|+.+|+.+..+++.||..|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444555555555555555555555554
No 15
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.86 E-value=5.8 Score=23.87 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
++.|+..|..+|..-.+.|+.-.-.-+|.|+.|+.|.+-+.+.|
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777889999988887776654
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.51 E-value=11 Score=26.72 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
+.++.++..........+.+|..-=..|+.....+..-|++|++..+.++..-.......+.++..+
T Consensus 20 e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 20 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence 4556666665555556677777777778888888999999999999999988777666666665544
No 17
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.97 E-value=9.2 Score=25.58 Aligned_cols=65 Identities=25% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+-..+...-.|...|..|++.|+--+..|-.-+.+|-.|+..+...+..++.....++..+.+++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677888888888888888888888888888888777777777777777766666654
No 18
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.91 E-value=9.2 Score=25.52 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
-..+.+.+..+...++.......+|.....++......|.......+..+..|.....+|+.-+.++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666667777766666666666777777777777777777777664
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.88 E-value=4.4 Score=26.42 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 31 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGK----FKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 31 r~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~----~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
|...+++++-+=|..+++.|..+..-+-.+... +..+ .+--+.|..|+.+...++..++.|+.....|...+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~----k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE----KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777666666777666655444322100 0011 11234677888888888888888888888888888
Q ss_pred HHhcC
Q psy4582 107 AVLTE 111 (133)
Q Consensus 107 ~~l~~ 111 (133)
..+++
T Consensus 78 ~~L~~ 82 (83)
T 1nkp_B 78 RALGG 82 (83)
T ss_dssp HTCSC
T ss_pred HHhcC
Confidence 87754
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.32 E-value=12 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
++++.+|...+..++..+.-+....++.+.....
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.82 E-value=8 Score=34.31 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
.|+.-|..|+.+.+.--++|..|+..++++-.-|.+|+ +|||=
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE----vDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE----VDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 45566666666666666777777777777777777776 55554
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.71 E-value=14 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
..+..++-..+.+.+.+..|+.+..+|.+.+.+|
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444433
No 23
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=79.91 E-value=14 Score=26.18 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAEL--------ERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~l--------e~~i~~l~~k~~Ele~~l~~l 109 (133)
.++..|....+||++.-...+.--+++ +..+..|+.|..++.+.+++.
T Consensus 46 ~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 46 AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444322222 235778889999999988876
No 24
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.68 E-value=7.5 Score=23.64 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
+.+|+.-.-.|...++-++.+|+.|..|.+.+++.+
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555566667777778888877777777654
No 25
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=77.63 E-value=1.1 Score=23.00 Aligned_cols=18 Identities=28% Similarity=0.710 Sum_probs=14.4
Q ss_pred ccccccCCCCCCCCCCCC
Q psy4582 6 TRWTLDQEVGGSSPSQGG 23 (133)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g 23 (133)
.||.+|..|++.+.+..|
T Consensus 1 srwrfparpg~s~~sg~g 18 (21)
T 3u85_B 1 SRWRFPARPGTTGGGGGG 18 (26)
T ss_pred CccccccCCCcccCCCcc
Confidence 489999999988776554
No 26
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=77.19 E-value=10 Score=23.37 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
..+++.+++||+-..+-+++.|..|..-+..+++-+
T Consensus 19 naklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999988888887654
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.65 E-value=11 Score=26.28 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
.+..|..+.+.|+...+.|+..+++|+..++....+++.|.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~ 55 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSR 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 5566667777777777778888888888888877788888754
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.09 E-value=31 Score=28.35 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy4582 39 EDKIRRKM 46 (133)
Q Consensus 39 ~dKLr~rL 46 (133)
.+++++..
T Consensus 376 ~~~~~~~~ 383 (487)
T 3oja_A 376 VSNGRRAH 383 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.08 E-value=25 Score=27.16 Aligned_cols=65 Identities=6% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+...+....++++.|...-..|...-.+++..+..++.+...++..+..++.+.......+....
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 87 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44444455677777777777777777777777777777777777777777777777777665443
No 30
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.65 E-value=16 Score=24.28 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 26 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILK-----QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 26 ~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~-----~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
+++.-+.+.+++++-+=|..|++.|..+..-+=.+. .--.=|.. =-+.|..|+.+...+...++.|+.+..
T Consensus 1 ~ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~----A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 1 GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKK----ATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999998877788888887666554442 00111111 135677888888888888888888888
Q ss_pred HHHHHHHHhcC
Q psy4582 101 ELDEILAVLTE 111 (133)
Q Consensus 101 Ele~~l~~l~~ 111 (133)
.|..-|..|.+
T Consensus 77 ~L~~rl~~L~~ 87 (88)
T 1nkp_A 77 QLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhc
Confidence 88888888764
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.48 E-value=33 Score=32.32 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
.|++.+..|+.+...|++.++.+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 32
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.56 E-value=18 Score=24.48 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+-..+..|+.++..++..+..++...
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.51 E-value=21 Score=33.61 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
.+.+++.+...++..+..++...++
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333333
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.23 E-value=26 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4582 86 AELERSISFLKEKETEL 102 (133)
Q Consensus 86 ~~le~~i~~l~~k~~El 102 (133)
..+...+..|+.+...|
T Consensus 113 ~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 35
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=70.00 E-value=12 Score=20.83 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+|++.++.|+....++++.+++|.+.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655544
No 36
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=69.80 E-value=23 Score=23.97 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
.|...-.+-+.+.|..+.. +|.+.|..-..+...++..|.+.+.++.+|+.
T Consensus 29 ~Ee~YfrqkekEqL~~LKk-------kl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 29 EEERYFRARAKEQLAALKK-------HKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555555555443 33566666666677777777777777777654
No 37
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=69.63 E-value=22 Score=23.74 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELE---------------RSISFLKEKETELDEILAVL 109 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le---------------~~i~~l~~k~~Ele~~l~~l 109 (133)
|+.|+.+|.++..-+.+|--...+|+......+ ..+..|+.|..++.+.|++.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555555555555544433 35778899999999988876
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.95 E-value=52 Score=27.02 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEK 85 (133)
Q Consensus 74 L~~~i~rLe~e~ 85 (133)
.+.|..+++.|+
T Consensus 419 ~~~~~~~~~~~~ 430 (487)
T 3oja_A 419 YEEMYVEQQSVQ 430 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.82 E-value=58 Score=30.66 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
++...-.+|+...+.+++....|++..++++..+
T Consensus 1013 ~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555555555555433
No 40
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.70 E-value=26 Score=23.53 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy4582 31 KMSLKSAVEDKIRRK 45 (133)
Q Consensus 31 r~SLlsAV~dKLr~r 45 (133)
+..|.||++.-++.+
T Consensus 12 ~leLQSALeaEIqAK 26 (81)
T 1wt6_A 12 LRELQEALEEEVLTR 26 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555444433
No 41
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=64.12 E-value=29 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.-|+++|++|+.+.+.++.....
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 42
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.20 E-value=18 Score=21.48 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
|-.-|.+..+|.+..+..|..|+.+..+|+++-
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334567777888888888888888888888764
No 43
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.84 E-value=32 Score=23.13 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERI 81 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rL 81 (133)
++-+.+++||.+=...+++|.+-+........+|
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL 47 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQL 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666644444443333333
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.63 E-value=42 Score=35.51 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
++++..+...+|+..|+..++..+.|.+-.++.+..|.
T Consensus 2046 ~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2046 TYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555666777777777777777777777777664
No 45
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=61.78 E-value=33 Score=23.76 Aligned_cols=20 Identities=40% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4582 90 RSISFLKEKETELDEILAVL 109 (133)
Q Consensus 90 ~~i~~l~~k~~Ele~~l~~l 109 (133)
..+..|+.|..++.+.|++.
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999988876
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.73 E-value=49 Score=24.92 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l 95 (133)
...|+..+.|+......++..+++|+.-...++..-..|
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~L 67 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777666666555555444433333333333
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.90 E-value=21 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+|++.+.+|-.++..|+..+.+|+.-.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344444445555555555555544433
No 48
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=60.65 E-value=28 Score=21.83 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4582 32 MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI 81 (133)
Q Consensus 32 ~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rL 81 (133)
.||..+|. .|+..++.++.|...++++=++=......|+.+++++
T Consensus 6 KSlVDtVY-----aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 6 KSLVDTVY-----ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665 3555555666666666666555555556666666655
No 49
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=60.57 E-value=34 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 72 FKLARMFERIDKEKAELE-----RSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le-----~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
...+..-+|.++++.... +-+..|-.-.+.+++++..... ...++...+.+-.-+|+||+
T Consensus 67 Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~-~~~~~~~l~~Gv~~~~~~l~ 131 (197)
T 1dkg_A 67 AEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADK-ANPDMSAMVEDIELTLKSML 131 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc-ccchHHHHHHHHHHHHHHHH
Confidence 334444444444444332 3344455555556666543321 12233334444455555553
No 50
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=60.15 E-value=36 Score=22.91 Aligned_cols=67 Identities=7% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.++..+......++.|...+......-.....+=.+|+.-.+........++.+.+.|++.....++
T Consensus 16 ~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 82 (127)
T 1ez3_A 16 EIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666666677766666543221222334566666666777777788888888887776644
No 51
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=59.06 E-value=46 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETE 101 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~E 101 (133)
.+.+++.....+...+..+......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (284)
T 1c1g_A 77 KATDAEADVASLNRRIQLFEEELDR 101 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.48 E-value=90 Score=26.90 Aligned_cols=17 Identities=12% Similarity=-0.029 Sum_probs=7.4
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy4582 62 QTENELNQGKFKLARMF 78 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i 78 (133)
..+..++.-++++.+++
T Consensus 125 ~Iq~slk~~Q~Qi~en~ 141 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDND 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchh
Confidence 34444444444444433
No 53
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=58.25 E-value=28 Score=22.16 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
|-..+.+.+..+.+++..++....--.||+.+|..++.
T Consensus 17 L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 17 LHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777788888888888888888877754
No 54
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=58.17 E-value=58 Score=24.66 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 51 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 103 (133)
Q Consensus 51 ~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele 103 (133)
...+.+++.++..-+.|..-+++++.....++..-..+..-...+..|-++++
T Consensus 65 q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~ 117 (192)
T 2p22_C 65 TDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYH 117 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444444444444443
No 55
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.06 E-value=46 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 81 IDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 81 Le~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+...+..+...+..|....+.-+..|.+|.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666553
No 56
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=57.96 E-value=21 Score=27.28 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q psy4582 38 VEDKIRRKMNEQKVQAQEE---IEILKQTENELNQ 69 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aE---le~L~~tq~eL~~ 69 (133)
++.+++.+.++.++..|-| -++|+..|.||..
T Consensus 216 l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 216 VEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555666666666666666 5566666666543
No 57
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.59 E-value=29 Score=20.98 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 86 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~ 86 (133)
.+..+.-+|.+-++.|.+--.-+.++|+||+.|.+
T Consensus 14 rlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555556666666666777777766543
No 58
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.25 E-value=32 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 80 RIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~~k~~El 102 (133)
.|+.+...|...+..|+..+.-|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.57 E-value=37 Score=21.91 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKF---KLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~---kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
|+.+|..+-.....-.+.+...+..|+..+. +.+..+..|..-...++..++.+.........-++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333334444444444444333 344445555554444555544444444444444433
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.97 E-value=86 Score=26.60 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 84 EKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 84 e~~~le~~i~~l~~k~~Ele~~l 106 (133)
...+|+.+++.+..+++.||..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555
No 61
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=55.55 E-value=36 Score=21.37 Aligned_cols=37 Identities=8% Similarity=0.302 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+|+|.+.+|+++...+.+..+.=+..-.+|++.+.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.22 E-value=88 Score=26.56 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy4582 42 IRRKMN 47 (133)
Q Consensus 42 Lr~rL~ 47 (133)
|+..|.
T Consensus 72 L~~~L~ 77 (390)
T 1deq_A 72 LRDSLF 77 (390)
T ss_pred HHHHHH
Confidence 333333
No 63
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.11 E-value=67 Score=27.73 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~ 68 (133)
-+..-+++.+++.|++.++.+.
T Consensus 39 d~~~r~~~~~~~~l~~~rn~~s 60 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNSVQ 60 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666665555544
No 64
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.54 E-value=70 Score=27.04 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~ 68 (133)
..-+.+.+++.|++.++.+.
T Consensus 39 ~~r~~~~~~~~l~~~~n~~s 58 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIA 58 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555444443
No 65
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=53.76 E-value=29 Score=27.99 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
+.+..++....+....++++|....+ .|+.++++|++++....+.
T Consensus 170 ~e~~~~~~~~~n~~~~eie~L~~~~~-------~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 170 AELQSKLKDLFNVDAFKLESLEAKNR-------ALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Confidence 33444444444444555555555544 4445555555555554443
No 66
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=53.71 E-value=22 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFL 95 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l 95 (133)
+..++..-+++-+.-+..+++.+..+
T Consensus 22 e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 22 DNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 67
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=52.64 E-value=11 Score=27.02 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 117 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dV 117 (133)
...+..|+...+.+...+..++...+.++..+..++....+++
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~ 121 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNV 121 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 3444556666777777777777777777777777766555543
No 68
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.58 E-value=43 Score=21.41 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
.+.+..|-++.|.+..+-|..--..+..+|..|+.|...+
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3345556666666555544444444444555555554433
No 69
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=52.46 E-value=44 Score=21.51 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQ-G---KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~-G---~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+...+...+..++.+..+...|.. | .+....+-.+|......++.-......+...|+.++..+.
T Consensus 46 ~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 46 ETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888899999999999999864 2 3334445566777777888888888888888888887664
No 70
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=52.39 E-value=72 Score=24.66 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCchhhhhhc
Q psy4582 69 QGKFKLARMFERIDKEKAEL-----ERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIV 132 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~l-----e~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~tapLy~QLl 132 (133)
+-..-.+..-+|.++++... ++-+..|-...+.+++++.... ...++...+.+-..+|+||+
T Consensus 84 R~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~--~~~~~~~l~eGvemi~k~l~ 150 (213)
T 4ani_A 84 RLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIET--DNEQAKSILQGMEMVYRSLV 150 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCS--CCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHH
Confidence 33333444444555544443 3445556666666777764332 22344445556666666664
No 71
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=50.13 E-value=80 Score=23.81 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLK----SAVEDKIRRKMNEQKVQAQEEIEILKQTENELN-----QGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 24 ti~ee~ir~SLl----sAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~-----~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.++++.|...+- -+.+|+.++...+..+.+..=+-.++..=.++. .-..+|...+.+++.--. ......
T Consensus 115 ~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl~--~~d~~~ 192 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ--GDDVDA 192 (227)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT--SSCHHH
T ss_pred CCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHH
Confidence 367776665433 456788888888888877777766665444431 112344444444442211 012455
Q ss_pred HHHHHHHHHHHHHHh
Q psy4582 95 LKEKETELDEILAVL 109 (133)
Q Consensus 95 l~~k~~Ele~~l~~l 109 (133)
++.+.++|++.+..+
T Consensus 193 ~~~~~~~L~~~~~~i 207 (227)
T 1u00_A 193 IEQAIKNVDKQTQDF 207 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555443
No 72
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=50.10 E-value=48 Score=21.23 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQG----KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G----~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
..+...+...+..++.+..+...|... .+....+-.++......++.-......+...|+.++..+..
T Consensus 46 ~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q~ 117 (119)
T 3uun_A 46 EGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQN 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357778888999999999999998642 33445556677777788888888888888899988887653
No 73
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.07 E-value=45 Score=20.96 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTE-NELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq-~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
.-+|..-.+....+.+|++...+.+ ++|...-.+=.+.+...+.|..++...++.|+...+
T Consensus 12 ~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 12 RDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666677777666544 234443333344444444555555555555544433
No 74
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.97 E-value=49 Score=22.73 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 75 ARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 75 ~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+..++.+...+..++..++.+..+++++++.+
T Consensus 7 ~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 7 VAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 75
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=49.45 E-value=47 Score=22.87 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..+|+.+++.|+.+...|+.-+..++.....+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666666666555543
No 76
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.33 E-value=71 Score=23.01 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
..++..+......++.|...+......-..-..+=.+|+.-..........++.+.+.|++.+....+
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35666666777777777777777554433333444566666667777777778888888887766643
No 77
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.22 E-value=62 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~ 69 (133)
..|..+..|++.+.++..+++.|...+..++.
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44455555555666666666655555554443
No 78
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.99 E-value=56 Score=21.69 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQ-GK-----------FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~-G~-----------~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
|+........+++.+...-..|.. |. ......+...+.+...+...+..++....++++.+..+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777765 32 23334555555555555555555555555555555544
No 79
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.88 E-value=34 Score=24.32 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
.....+.|......|+...+.|.+-+.+|..+...+++.+..++.+....
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777767888888889999999999999888886665
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.75 E-value=80 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKE-KETELDEILAVL 109 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~-k~~Ele~~l~~l 109 (133)
+.-+.+.|++.-|+.+-+.++.....++. ...=+++|+...
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888887 455567777665
No 81
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.85 E-value=1.4e+02 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 63 TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 63 tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
..++|..-...|++-+..=-+...+|+.+++-+..+++.||..|.
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433335555666666666666666666664
No 82
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.34 E-value=40 Score=20.50 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 83 KEKAELERSISFLKEKETELD 103 (133)
Q Consensus 83 ~e~~~le~~i~~l~~k~~Ele 103 (133)
.|.++++..+..|....+|+.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 83
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.08 E-value=60 Score=21.50 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELNQ----------------------GKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~----------------------G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..+.....++..+..+..+|.. ..+.|+.-+..++.+.+.|++.+..+..+..++...
T Consensus 27 ~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 27 QQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666644 234455555555555555566666666666666555
Q ss_pred HHHh
Q psy4582 106 LAVL 109 (133)
Q Consensus 106 l~~l 109 (133)
+..+
T Consensus 107 l~~~ 110 (117)
T 2zqm_A 107 IQSA 110 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.00 E-value=60 Score=21.49 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.+..|+...+.++..+..|..+...+...+.++.
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665553
No 85
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.45 E-value=71 Score=22.18 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL 67 (133)
..++..++.+++|+++++.+..-|
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345566677777777777655444
No 86
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.29 E-value=80 Score=23.02 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
+-...+++|+.++.++..-...+...+++-+.....++..+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655555555554444433
No 87
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=45.28 E-value=42 Score=19.25 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
+|++-+.+|-.++..|+..+.+|+....
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444444444455555555555544433
No 88
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.20 E-value=79 Score=22.05 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEILKQTEN 65 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~ 65 (133)
.++..++.+++|+++++.+..
T Consensus 42 elrr~iq~L~~el~~l~~~~~ 62 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKA 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 345555666777777665443
No 89
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=43.99 E-value=1.1e+02 Score=26.28 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRK----MNEQKVQAQEEIEILKQ-TENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 100 (133)
Q Consensus 38 V~dKLr~r----L~e~~~~~~aEle~L~~-tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~ 100 (133)
-++.||+| ++|+....+++++.|.. ... +-++.|..++..++..+..|...++.|.....
T Consensus 49 ~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~g 113 (526)
T 2de0_X 49 DHEILRRRIENGAKELWFFLQSELKKLKNLEGN---ELQRHADEFLLDLGHHERSIMTDLYYLSQTDG 113 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35666665 56888888888888887 333 33457777777777777778777777665443
No 90
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.93 E-value=45 Score=19.15 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=17.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELE 89 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le 89 (133)
++|......|+++++||+..-.+|+
T Consensus 11 EeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 11 EEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4555566677778888877776664
No 91
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.65 E-value=43 Score=18.88 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~ 96 (133)
|++-+.+|-.++..++..+.+|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555555544
No 92
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.46 E-value=26 Score=19.18 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~ 96 (133)
+...++.|++|...+...++.+-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444333
No 93
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=43.31 E-value=37 Score=24.17 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 52 ~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
+-...+++++.++.++..-...+...+++-+.....++..+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666555555554443
No 94
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.17 E-value=98 Score=22.86 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=11.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAEL 88 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~l 88 (133)
....++....+.+.+...+|..++...
T Consensus 48 ~l~~~~~~~~~e~~~L~~~l~~E~~~R 74 (154)
T 2ocy_A 48 TLKRELSDRDDEVKRLREDIAKENELR 74 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.94 E-value=76 Score=21.22 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 69 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 69 ~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.....+......|+.|...|...+..|+.....|...+..+.+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3445667778889999999999999999888888888876543
No 96
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.85 E-value=89 Score=22.00 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
|...+.+...-|+.....++..+..|+...+.++..+..++
T Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 89 GDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555666666666666666666655554
No 97
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.75 E-value=1.7e+02 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~eL 67 (133)
..-+.+.+++.|++.++.+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~ 96 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAV 96 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 98
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=41.60 E-value=1.1e+02 Score=23.06 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=49.2
Q ss_pred CCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLK----SAVEDKIRRKMNEQKVQAQEEIEILKQTENELN-----QGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 24 ti~ee~ir~SLl----sAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~-----~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.++++.|..-+. -+.+|+.++...+..+++..=+..++++=.++. .-..+|+..+.+++.--+. .....
T Consensus 118 ~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~--~~~~~ 195 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG--EDKAA 195 (219)
T ss_dssp SCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHS--SCHHH
T ss_pred cccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhc--CCHHH
Confidence 467776655443 456788888888888877777776666544422 1233455555544433322 13556
Q ss_pred HHHHHHHHHHHHHHh
Q psy4582 95 LKEKETELDEILAVL 109 (133)
Q Consensus 95 l~~k~~Ele~~l~~l 109 (133)
++.+.++|++....+
T Consensus 196 i~~~~~~L~~~~~~i 210 (219)
T 4e81_A 196 IEAKMQELAQVSQKL 210 (219)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777776665544
No 99
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.20 E-value=49 Score=18.77 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
+|++-+.+|-.++..++..+.+|+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444455555555555555444
No 100
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=41.16 E-value=75 Score=20.92 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
|++.+-....|+..|+..-.-=.+--++|.|+|--+.-|.+.|+.....++
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 444444556666666666555556778888888888888888877665554
No 101
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=41.12 E-value=1e+02 Score=22.46 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|.+-.+.+.+|++.=++...-|.....-.+..+++-+..-+++.+-..+++....+|++-+..|
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35666677778888888887777777777777777777777777777777777777777777766
No 102
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.06 E-value=48 Score=18.67 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+|++-+.+|-.++..++..+.+|+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555555555555555543
No 103
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.84 E-value=92 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 63 TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 63 tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
..+-|..-...|+..|.+|+...+.++..+..++......+..+..
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555556666666777777777776666666666555555544
No 104
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.62 E-value=93 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 76 RMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 76 ~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
.-+.+++++...++.....|..+.+..+.
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 105
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=40.12 E-value=55 Score=23.56 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~ 99 (133)
+..+.+++.-++.+++-.+.+..... .++|.++..|.+.+.+.|..++.+-
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd--~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEA--ADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTC--TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444433322 3578888888888888888887654
No 106
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.34 E-value=82 Score=20.84 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 79 ERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 79 ~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.++..+...+...+..+..+..++...+..+.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444455555555555555554
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.28 E-value=78 Score=20.58 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 72 FKLARMFERIDKEKAELERSISFLKEKETELDE 104 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~ 104 (133)
..|.+.+.+-+++.+.+...+..|.++..+++.
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666666666666666666666665553
No 108
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.26 E-value=52 Score=23.29 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCC
Q psy4582 72 FKLARMFERIDKEKAELERSISFL---KEKETELDEILAVLTEK 112 (133)
Q Consensus 72 ~kL~~~i~rLe~e~~~le~~i~~l---~~k~~Ele~~l~~l~~~ 112 (133)
+++...+..++.+...+..+...| ..+..|+.++++.++.-
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l 55 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKI 55 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666777777777777 77778888888887653
No 109
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.06 E-value=96 Score=21.57 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 66 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 66 eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|...+..|+..|..|.......+.....|......++.-++++
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444444444444444444444333
No 110
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.86 E-value=53 Score=18.51 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+|++-+.+|-.++..++..+.+++.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555555556666655555543
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.84 E-value=1.7e+02 Score=24.32 Aligned_cols=22 Identities=5% Similarity=0.261 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 47 NEQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 47 ~e~~~~~~aEle~L~~tq~eL~ 68 (133)
-+..-+.+.+++.|++.++.+.
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666654
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.15 E-value=88 Score=20.84 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
|-++|-.|++..+.+. .-|+--=++|+.-...+......+...++.++...+.|+..-..-.+.|+.|
T Consensus 7 lleqLE~KIq~avdtI----~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666555543 3333334444445555556666666666666666666666555555555554
No 113
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=38.07 E-value=1e+02 Score=21.68 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGK-FKLARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~-~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
..+...+...+.-++.+.....+|.... ..-..+-.+|+.....++.-......+...|..+
T Consensus 98 ~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eA 160 (161)
T 3lbx_A 98 QSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777888888888888885533 3344444556666666666666666666655543
No 114
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=37.88 E-value=88 Score=20.81 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTT 123 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV~~ 123 (133)
..|+...+.+-+.+..........-..|.+++-+-| . .+.+||+|.+.+
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l---~-~~GI~~eeL~~~ 81 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREML---I-ADGIDPNELLNS 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HcCCCHHHHHhh
Confidence 334444444444444333333333333333333333 2 345899887643
No 115
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.78 E-value=49 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy4582 89 ERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 89 e~~i~~l~~k~~Ele~~l~~l 109 (133)
...+..++.+...+.+-++.|
T Consensus 74 ~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444
No 116
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.45 E-value=57 Score=18.47 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
+|++-+.+|-.++..++..+.+|+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444445555555554444
No 117
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.34 E-value=1e+02 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+++..+.+++.+...+......-...-..|...+.++
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333344444444444443333333344444444444
No 118
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.93 E-value=1.6e+02 Score=24.47 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERI 81 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rL 81 (133)
+..|+..|+..-.+|.+--.++..++.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333333
No 119
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.66 E-value=82 Score=20.39 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
.|..|+.+...+....+.|+....+|..-+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544443
No 120
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=36.47 E-value=96 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4582 60 LKQTENELNQGKFKLARMFERIDKEKAELERS 91 (133)
Q Consensus 60 L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~ 91 (133)
+|.-+..|+.....|++.+.+|+.+...+...
T Consensus 12 ~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~ 43 (218)
T 3frt_A 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRS 43 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 121
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.30 E-value=93 Score=24.80 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
+..|.+.-..|..-..+|.+.++++.++...++..++.|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555556666666666666666666666665554
No 122
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=36.01 E-value=79 Score=23.08 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.5
Q ss_pred HHhhHH
Q psy4582 67 LNQGKF 72 (133)
Q Consensus 67 L~~G~~ 72 (133)
.+.|..
T Consensus 48 ~k~g~~ 53 (179)
T 2gd5_A 48 AKKGQK 53 (179)
T ss_dssp HHTTCH
T ss_pred HHcCCH
Confidence 334443
No 123
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=35.84 E-value=61 Score=18.35 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
+|++-+.+|-.++..|+..+.+|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555555555555555555554
No 124
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.78 E-value=1.1e+02 Score=21.31 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE 89 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le 89 (133)
|...+++++.|..+|+......-..-..|+.++.+|..|...|.
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655554444445555555555544443
No 125
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.06 E-value=1.1e+02 Score=21.25 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 65 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
++|..-.=.|++-+.+|+.+...+...-...-.++.+|+.-++.|
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 455555555666666666665555554444444555555444444
No 126
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=34.69 E-value=20 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=12.1
Q ss_pred cCCCCC--CCCCCCCCCchHHHHHHHH
Q psy4582 11 DQEVGG--SSPSQGGTITDEHIKMSLK 35 (133)
Q Consensus 11 ~~~~~~--~~~~~~gti~ee~ir~SLl 35 (133)
|+|.++ .+.++.+-|+||.+|+=|+
T Consensus 3 ~~p~s~~~~~~~~~~~iTEe~VRryL~ 29 (82)
T 1nha_A 3 PQPPSGKTTPNSGDVQVTEDAVRRYLT 29 (82)
T ss_dssp -------------CCCCCHHHHHHHHH
T ss_pred CCCCccCcCCccCCCCCCHHHHHHHHH
Confidence 566665 3334558999999998776
No 127
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.58 E-value=58 Score=17.73 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 86 AELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 86 ~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
..+++.|..|..|.+.+++.++.++
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777664
No 128
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.37 E-value=2.3e+02 Score=24.50 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHH------------HHHHHHHHHHHHHHHHHHH
Q psy4582 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLA----------RMFER------------IDKEKAELERSISFLKEKE 99 (133)
Q Consensus 42 Lr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~----------~~i~r------------Le~e~~~le~~i~~l~~k~ 99 (133)
|...|.+..+....--+-...++.-++..++... .||.+ .+.-..+|+..++.+..|+
T Consensus 100 Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 100 LNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 3344444444444444445566666666655555 35554 3334445666666666666
Q ss_pred HHHHHHHHHh
Q psy4582 100 TELDEILAVL 109 (133)
Q Consensus 100 ~Ele~~l~~l 109 (133)
+.|+..+..+
T Consensus 180 ~~l~~~~~~~ 189 (461)
T 3ghg_B 180 QKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6666666655
No 129
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.31 E-value=82 Score=19.07 Aligned_cols=8 Identities=50% Similarity=0.792 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy4582 56 EIEILKQT 63 (133)
Q Consensus 56 Ele~L~~t 63 (133)
+++.|++-
T Consensus 20 d~eaLk~E 27 (53)
T 2yy0_A 20 EIELLRLE 27 (53)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 130
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=33.27 E-value=19 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.377 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy4582 95 LKEKETELDEILAVLTEKTEVDVDEAV 121 (133)
Q Consensus 95 l~~k~~Ele~~l~~l~~~~~~dVDeaV 121 (133)
|.+...+|+..++.|+ .+++++|+++
T Consensus 32 FEeal~eLEeIV~~LE-~gel~LEesl 57 (100)
T 1vp7_A 32 FETALAELESLVSAME-NGTLPLEQSL 57 (100)
T ss_dssp HHHHHHHHHHHHHHHH-TTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCCCHHHHH
Confidence 5556666666666666 4456666654
No 131
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.12 E-value=2.5e+02 Score=24.53 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy4582 90 RSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 90 ~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.+|..|+..++.+-.-|.+|+
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.07 E-value=2.2e+02 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQ 62 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~ 62 (133)
++.+.....+++++...+-+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555554444443
No 133
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.94 E-value=2e+02 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAELE 89 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~le 89 (133)
.....|.++-...++-+..++..-+.|.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 3444444444444444444444444443
No 134
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.81 E-value=1.2e+02 Score=20.83 Aligned_cols=7 Identities=14% Similarity=0.031 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy4582 97 EKETELD 103 (133)
Q Consensus 97 ~k~~Ele 103 (133)
.+...|.
T Consensus 83 ~kn~~L~ 89 (97)
T 2eqb_B 83 ILNKRLT 89 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 135
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=32.58 E-value=2.6e+02 Score=24.56 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4582 26 TDEHIKMSLKSAVEDKIRRKMN---------------EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 90 (133)
Q Consensus 26 ~ee~ir~SLlsAV~dKLr~rL~---------------e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~ 90 (133)
..++-|..++.++...+.+.+. +.+.....++. .+++.+...-+..|+..+...+.....+++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 662 (695)
T 2j69_A 585 QADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVS--KRINDDIVSRKSELDNLVKQKQTREINRES 662 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666655555544 33333333332 356666677777777777776665555555
Q ss_pred HHHHHHH
Q psy4582 91 SISFLKE 97 (133)
Q Consensus 91 ~i~~l~~ 97 (133)
....|+.
T Consensus 663 ~~~~l~~ 669 (695)
T 2j69_A 663 EFNRLKN 669 (695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 136
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.53 E-value=1.3e+02 Score=21.24 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAEL--------ERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~l--------e~~i~~l~~k~~Ele~~l~~l 109 (133)
.++..|.-..+||++.-..-+..-+++ ...+..|+.|..++.+.|++.
T Consensus 33 ~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 33 AHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444443322222 245778899999999998877
No 137
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.05 E-value=2.4e+02 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 85 KAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 85 ~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+...+..++....++++.+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 138
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=31.98 E-value=1.5e+02 Score=25.47 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 23 GTITDEHIKMSLKS----AVEDKIRRKMNEQKVQAQEEIEILKQTENE 66 (133)
Q Consensus 23 gti~ee~ir~SLls----AV~dKLr~rL~e~~~~~~aEle~L~~tq~e 66 (133)
+.++++.|...+.. +-+|+.++...+..+.+..=+..++..=.+
T Consensus 505 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~ 552 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE 552 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666554433 456777777777777666666655544333
No 139
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.91 E-value=84 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=8.2
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy4582 65 NELNQGKFKLARMFERID 82 (133)
Q Consensus 65 ~eL~~G~~kL~~~i~rLe 82 (133)
.+..+.+.||+.-|+.||
T Consensus 26 ae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 26 AEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 140
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.55 E-value=1.2e+02 Score=21.32 Aligned_cols=35 Identities=6% Similarity=0.152 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
-++.-+.+|+++...++.....+..+...++..++
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555443
No 141
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.44 E-value=92 Score=19.10 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
|++....|+.+...|...+..|+.....|...
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 142
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=31.34 E-value=82 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=1.1
Q ss_pred HHHHHHHHHHH
Q psy4582 54 QEEIEILKQTE 64 (133)
Q Consensus 54 ~aEle~L~~tq 64 (133)
.++++.|++-.
T Consensus 5 ~~~~~~l~~~~ 15 (182)
T 3kqg_A 5 NAQIPELKSDL 15 (182)
T ss_dssp --------CHH
T ss_pred hhhHHHHHHHH
Confidence 34444444433
No 143
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.32 E-value=1.3e+02 Score=21.21 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 59 ILKQTENELNQGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 59 ~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.+..+..||...-..|+.-+..|+.-...+++|-.+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~k 99 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGK 99 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 445555566665555555555555555555544433
No 144
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=30.95 E-value=1.1e+02 Score=20.04 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+|...=.+++..+..+..|++.+-+.-+.|
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL 35 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 35 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 333333444444444444444444333333
No 145
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=30.80 E-value=76 Score=17.95 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~ 96 (133)
|++-..+|-.++..++..+.+|+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444444444444443
No 146
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.72 E-value=51 Score=25.75 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
+.+...+.-++.+.+.+.++++ ++..|.+|+++..+-++.+.-.+.-..+|-..+++++
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~----le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~ 203 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQE----ALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHH----HHHSCC-------------CTTTHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhce
Confidence 4444555555555555555443 4444455555555555554444555556666666664
No 147
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.56 E-value=1.1e+02 Score=19.62 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy4582 43 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 85 (133)
Q Consensus 43 r~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~ 85 (133)
|.|=..-+..++..+..|......|..--..|...+..|..|.
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666555554444444444444444443
No 148
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.35 E-value=78 Score=17.91 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLK 96 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~ 96 (133)
+|++-+.+|-.++..++..+.+|+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 344444444444444444444444
No 149
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.30 E-value=82 Score=19.91 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 54 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 54 ~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+..+..|...=......+.+|+..+.-.++.+++|+.-+..|...+++.
T Consensus 11 gekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~ 59 (64)
T 3t97_C 11 GEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444455566788888888888888888888777666554
No 150
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=30.26 E-value=27 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 74 LARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
|+.-|+-|++....|+..|..|.+|
T Consensus 5 leqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455556666666666555555443
No 151
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.24 E-value=1.2e+02 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 85 KAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 85 ~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
...+++.+......+.+|..-+.++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444
No 152
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.73 E-value=1.6e+02 Score=23.95 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 81 IDKEKAELERSISFLKEKETELDEI 105 (133)
Q Consensus 81 Le~e~~~le~~i~~l~~k~~Ele~~ 105 (133)
|+.....++..|+.|+.++.++...
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555544444443
No 153
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=29.51 E-value=1.1e+02 Score=19.47 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 45 KMNEQKVQAQEEIEIL 60 (133)
Q Consensus 45 rL~e~~~~~~aEle~L 60 (133)
++...+..+...++.|
T Consensus 25 ~l~~~l~~l~~~~~~L 40 (101)
T 3fav_A 25 DLKTQIDQVESTAGSL 40 (101)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 154
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.47 E-value=1.2e+02 Score=20.00 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 18 SPSQG-GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 18 ~~~~~-gti~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL 67 (133)
+||.+ .-.=.|.=|..|-.|+.+- ++|...+.+.+.|+..|+.-...|
T Consensus 12 ~Pse~YWk~lAE~RR~AL~eaL~EN--~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 12 NPSSQYWKEVAEQRRKALYEALKEN--EKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 3344455666677766653 666677777777777666655544
No 155
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.46 E-value=66 Score=26.84 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 48 EQKVQAQEEIEILKQTENELN 68 (133)
Q Consensus 48 e~~~~~~aEle~L~~tq~eL~ 68 (133)
+..-+.+.+++.|++.++.+.
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~s 57 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLS 57 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 156
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=29.41 E-value=14 Score=30.74 Aligned_cols=50 Identities=14% Similarity=0.416 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 58 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 108 (133)
Q Consensus 58 e~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~ 108 (133)
+.+++.|+-|+.| ..|+.-|..|+++...+..--..|....++..+....
T Consensus 8 ~ai~~~qen~~k~-e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~ 57 (384)
T 3tnf_B 8 QAIKRAQENIKKG-EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTD 57 (384)
T ss_dssp HHHHHHHTTTTTT-THHHHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTT
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcch
Confidence 4578888899999 8899999999999999998888888877766555433
No 157
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=29.25 E-value=25 Score=19.83 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=7.6
Q ss_pred CCCCCCchHH
Q psy4582 20 SQGGTITDEH 29 (133)
Q Consensus 20 ~~~gti~ee~ 29 (133)
++.|+|+||+
T Consensus 4 sp~gsiseet 13 (35)
T 1n6j_G 4 SPKGSISEET 13 (35)
T ss_dssp CCSSCCCHHH
T ss_pred CCCCcccHHH
Confidence 4568899876
No 158
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.22 E-value=1.3e+02 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
.|...+.+...|+..+..++.++++|+..|..+
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555544444
No 159
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.56 E-value=1e+02 Score=18.73 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4582 78 FERIDKEKAELERSISFLK 96 (133)
Q Consensus 78 i~rLe~e~~~le~~i~~l~ 96 (133)
+..|+.+...|...+..|.
T Consensus 31 v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 160
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=28.31 E-value=1.2e+02 Score=19.25 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh
Q psy4582 53 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL------------ERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 53 ~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~l------------e~~i~~l~~k~~Ele~~l~~l 109 (133)
.....+.+..+-.++.....+|+..+.+|+.....| ............++...|..+
T Consensus 4 i~v~~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i 72 (96)
T 3h6p_C 4 IMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSM 72 (96)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666655544 233344444444444444444
No 161
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.95 E-value=1.8e+02 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 56 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92 (133)
Q Consensus 56 Ele~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i 92 (133)
-+.+|......-.....+.++-|..|...-...+...
T Consensus 57 nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RA 93 (155)
T 2efr_A 57 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRA 93 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444433333333333
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=27.20 E-value=2.7e+02 Score=24.40 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy4582 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 83 (133)
Q Consensus 40 dKLr~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~ 83 (133)
+.+..+|...++..+.+++.+.. .-..++..++..+++|+.
T Consensus 629 ~~~~~~~~~~i~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 629 REVSKRINDDIVSRKSELDNLVK---QKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHh
Confidence 33444444444444444444332 233455666666666666
No 163
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.03 E-value=78 Score=16.85 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 80 RIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~~k~~El 102 (133)
-|+=|.+.++..|..|++|+.-+
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 35667777777777777776654
No 164
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=26.83 E-value=1.1e+02 Score=23.59 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy4582 79 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAV 121 (133)
Q Consensus 79 ~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDeaV 121 (133)
.-|+.....++..+..|......+++.+..+++...++.++.|
T Consensus 79 ~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~~~~~e~f 121 (249)
T 3qao_A 79 VALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKF 121 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3455666666667777777777777888777777666665544
No 165
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=26.25 E-value=2e+02 Score=21.19 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 45 KMNEQKVQAQEEIEILKQTENELNQ 69 (133)
Q Consensus 45 rL~e~~~~~~aEle~L~~tq~eL~~ 69 (133)
.+...+...+..++.+.....+|..
T Consensus 59 ~~~~el~~~~~~v~~l~~~~~~L~~ 83 (250)
T 1quu_A 59 AFESDLAAHQDRVEQIAAIAQELNE 83 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777777754
No 166
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.12 E-value=1.6e+02 Score=20.05 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 73 KLARMFERIDKEKAELERSISFLKEKETEL 102 (133)
Q Consensus 73 kL~~~i~rLe~e~~~le~~i~~l~~k~~El 102 (133)
+++.++..+.+....+...+..+....+.+
T Consensus 12 ~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 12 IYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.89 E-value=1.8e+02 Score=24.25 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 62 ~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
....+|...-.++++++..|..+++.++.....++.+...+.+-+..++.
T Consensus 42 ~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 42 NVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445555555566666666666666777777777666666666666654
No 168
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.27 E-value=2e+02 Score=22.65 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=7.2
Q ss_pred CCCCCCCccccccCch
Q psy4582 111 EKTEVDVDEAVTTTAP 126 (133)
Q Consensus 111 ~~~~~dVDeaV~~tap 126 (133)
...++.|++|--+..+
T Consensus 88 ke~diqV~ea~Rsp~~ 103 (233)
T 2yko_A 88 RQANVQIQEIQRTPQR 103 (233)
T ss_dssp ---CCCEEEEEEC---
T ss_pred cccceeeechhcCCCC
Confidence 3466777877666544
No 169
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.92 E-value=1.4e+02 Score=18.93 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 26 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEIL 60 (133)
Q Consensus 26 ~ee~ir~SLlsAV~dKLr~rL~e~~~~~~aEle~L 60 (133)
..+.-+...+++++-+=|..|+..|..+..-+-.+
T Consensus 7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSL 41 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 34566778888888887777888777766655443
No 170
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.73 E-value=1.9e+02 Score=20.60 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 77 MFERIDKEKAELERSISFLKEKETELDEIL 106 (133)
Q Consensus 77 ~i~rLe~e~~~le~~i~~l~~k~~Ele~~l 106 (133)
-+.+|+.|...|...++....+++.+.+-.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555444444444444444333
No 171
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.70 E-value=1.6e+02 Score=19.52 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 57 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 57 le~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
-..|.-..+||-..=..|..+-.-|..|...|.....+++.++.|+++-+.
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666777777777777777777777766554
No 172
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.12 E-value=2.5e+02 Score=21.73 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~ 97 (133)
-.|.++|..|+.-+-.+--+||.....+ |.+|.+.+..++..|+.
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~-------l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNT-------LSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHccC
Confidence 3455666666666666555555554444 44444444444444443
No 173
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.04 E-value=2e+02 Score=20.53 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~ 107 (133)
-+.|+++|..|.+.-......+++|+...+.+...|.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3445666666666666666666666666666655553
No 174
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=23.97 E-value=2.3e+02 Score=21.18 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4582 38 VEDKIRRKMNEQKVQAQEEIE 58 (133)
Q Consensus 38 V~dKLr~rL~e~~~~~~aEle 58 (133)
+.+.|+..+-+.+.....+.+
T Consensus 95 ~a~~l~~~v~~~l~~~~~~~~ 115 (305)
T 2efl_A 95 ISENMASQIIVDLARYVQELK 115 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333444444443
No 175
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.89 E-value=1.2e+02 Score=20.39 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4582 80 RIDKEKAELERSISFLK 96 (133)
Q Consensus 80 rLe~e~~~le~~i~~l~ 96 (133)
+|+.+.+...++|..|+
T Consensus 62 ~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 62 RLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444443
No 176
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=23.08 E-value=16 Score=24.75 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=6.2
Q ss_pred chhhhhhcC
Q psy4582 125 APIYKQIVN 133 (133)
Q Consensus 125 apLy~QLl~ 133 (133)
+||++|||+
T Consensus 37 SPLF~qILt 45 (83)
T 1vf6_A 37 SPLFNQILT 45 (83)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 577777763
No 177
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.78 E-value=2e+02 Score=20.11 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 67 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 67 L~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
+..+..-+++-+..++...+.++..+..+++....+...+..+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777777777777777666665
No 178
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=22.45 E-value=2e+02 Score=20.50 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy4582 88 LERSISFLKEKETELDEILAVLT 110 (133)
Q Consensus 88 le~~i~~l~~k~~Ele~~l~~l~ 110 (133)
.......+.....+|+..|+...
T Consensus 51 ak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 51 AREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCe
Confidence 33444555667777888777764
No 179
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.44 E-value=2e+02 Score=20.08 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEIL 60 (133)
Q Consensus 46 L~e~~~~~~aEle~L 60 (133)
|+..+....++++.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 180
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=22.32 E-value=2e+02 Score=20.01 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4582 55 EEIEILKQTENELNQGKFKLARMFERIDK---EKAELERSISFLKEKETELDE 104 (133)
Q Consensus 55 aEle~L~~tq~eL~~G~~kL~~~i~rLe~---e~~~le~~i~~l~~k~~Ele~ 104 (133)
+--.+|++..+-|..-+.+|++-..+|.+ ..+++-..+.-+.-.+..+.+
T Consensus 52 anTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 52 ANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456666777777777777765544443 333333333334444444433
No 181
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.85 E-value=1.7e+02 Score=18.89 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4582 84 EKAELERSISFLKEKETELDEILAVL 109 (133)
Q Consensus 84 e~~~le~~i~~l~~k~~Ele~~l~~l 109 (133)
....+......+.....++...+...
T Consensus 61 ~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 61 AHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 182
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.51 E-value=1.8e+02 Score=19.00 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 71 KFKLARMFERIDKEKAELERSISFLKEK 98 (133)
Q Consensus 71 ~~kL~~~i~rLe~e~~~le~~i~~l~~k 98 (133)
-...+++..+|...+..++..+.-+...
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666665555555443
No 183
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.46 E-value=1.6e+02 Score=20.06 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4582 49 QKVQAQEEIEILKQTEN 65 (133)
Q Consensus 49 ~~~~~~aEle~L~~tq~ 65 (133)
.+..+++|++.|...++
T Consensus 7 ~~~~Lk~El~~L~~~E~ 23 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQ 23 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666555554
No 184
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.43 E-value=3.5e+02 Score=22.41 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy4582 83 KEKAELERSI 92 (133)
Q Consensus 83 ~e~~~le~~i 92 (133)
.++..|.+.+
T Consensus 45 ~~rr~l~n~~ 54 (412)
T 3u06_A 45 MERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 185
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.43 E-value=1.7e+02 Score=18.85 Aligned_cols=43 Identities=12% Similarity=-0.061 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 70 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 70 G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
.-.-.++.|.+|..+...-...|..|+.....|.+.+..+...
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445567888888888888888888888888888877777543
No 186
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=21.15 E-value=3.9e+02 Score=22.81 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=43.9
Q ss_pred CCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSL----KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELN-----QGKFKLARMFERIDKEKAELERSISF 94 (133)
Q Consensus 24 ti~ee~ir~SL----lsAV~dKLr~rL~e~~~~~~aEle~L~~tq~eL~-----~G~~kL~~~i~rLe~e~~~le~~i~~ 94 (133)
.++++.|..-+ ..+-+|+.+++..+..+.+..=+..+++.=+++. .-+.+|+..+.+++.--.. ...+.
T Consensus 506 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 583 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG--EDKAA 583 (605)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHS--SCHHH
T ss_pred CCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhc--CCHHH
Confidence 46666665544 4456777777777777776666655554433321 1122344444443332221 12455
Q ss_pred HHHHHHHHHHHHHHh
Q psy4582 95 LKEKETELDEILAVL 109 (133)
Q Consensus 95 l~~k~~Ele~~l~~l 109 (133)
++.+.++|++.+..+
T Consensus 584 ~~~~~~~l~~~~~~~ 598 (605)
T 4b9q_A 584 IEAKMQELAQVSQKL 598 (605)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655443
No 187
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.12 E-value=2.1e+02 Score=19.64 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 74 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 74 L~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
..+...-|+.....++..+..|+.....|+..+....+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (135)
T 1q06_A 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPG 114 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455566677777777777777777777777765543
No 188
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.04 E-value=3.1e+02 Score=21.68 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4582 44 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 112 (133)
Q Consensus 44 ~rL~e~~~~~~aEle~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~ 112 (133)
..|+.......-+++-|--...=...==..|+..|+.|..-+.-+...+..+++...+|+..|..++.+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 189
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.85 E-value=1.9e+02 Score=19.19 Aligned_cols=16 Identities=13% Similarity=0.190 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4582 86 AELERSISFLKEKETE 101 (133)
Q Consensus 86 ~~le~~i~~l~~k~~E 101 (133)
+.|...-..++..-..
T Consensus 68 e~L~~~S~~F~k~A~k 83 (96)
T 1sfc_A 68 DALQAGASQFETSAAK 83 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 190
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.68 E-value=2.4e+02 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4582 86 AELERSISFLKEKETELDEILAVLTE 111 (133)
Q Consensus 86 ~~le~~i~~l~~k~~Ele~~l~~l~~ 111 (133)
.++..-+..|..++.+++.-++++..
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555566666666655544
No 191
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=20.41 E-value=8 Score=30.91 Aligned_cols=60 Identities=15% Similarity=0.385 Sum_probs=4.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy4582 59 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 119 (133)
Q Consensus 59 ~L~~tq~eL~~G~~kL~~~i~rLe~e~~~le~~i~~l~~k~~Ele~~l~~l~~~~~~dVDe 119 (133)
.+++.|+-|+.| ..|+.-|..|+++...+..--..|....++..+....-+.-..-+||+
T Consensus 26 ai~~~qen~~k~-e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine 85 (267)
T 3tkl_B 26 AIKRAQENIKKG-EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINE 85 (267)
T ss_dssp --------------------------------------------------CCCCCHHHHHH
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHH
Confidence 567888899999 889999999999999998888888887777666554443333334444
No 192
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=20.39 E-value=2e+02 Score=19.11 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy4582 24 TITDEHIKMSLKSAVEDKIRRKMNEQK 50 (133)
Q Consensus 24 ti~ee~ir~SLlsAV~dKLr~rL~e~~ 50 (133)
....+..-..++..+...+++.+...+
T Consensus 15 ~~~~~~~l~~~l~~~~~~~~~~~~~~l 41 (162)
T 2fa5_A 15 LLNLEQFLPYRLSVLSNRISGNIAKVY 41 (162)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556667767766666555
No 193
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.30 E-value=1.3e+02 Score=16.96 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4582 46 MNEQKVQAQEEIEILKQTENEL 67 (133)
Q Consensus 46 L~e~~~~~~aEle~L~~tq~eL 67 (133)
++.+....+++++.|++...-|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~L 26 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHH
Confidence 4555666677776666655433
Done!