RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4582
(133 letters)
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 59.2 bits (143), Expect = 5e-13
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 33 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 92
SL SAV DK+R +M E+ +AQ E+ LK+TE +L +G KL M R+D+E AE++++I
Sbjct: 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62
Query: 93 SFLKEKETELDEILA 107
LK+K+ EL L
Sbjct: 63 ELLKKKDEELSSALE 77
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor
receptor and arginine...; endosome, trafficking complex,
VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces
cerevisiae} PDB: 2caz_A
Length = 174
Score = 49.3 bits (117), Expect = 2e-08
Identities = 11/106 (10%), Positives = 36/106 (33%), Gaps = 1/106 (0%)
Query: 28 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 87
++++ + + + ++ + E + + + K L + + I++
Sbjct: 15 QNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHS 74
Query: 88 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIVN 133
L I L ++ + + + + DV+ Q+ N
Sbjct: 75 LNAQIDVLTANRAKVQQFSS-TSHVDDEDVNSIAVAKTDGLNQLYN 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 39/140 (27%)
Query: 12 QEVG-G-----SSPS------QGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQ--AQEEI 57
QE G G +S + + D H K + ++ D + + ++
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 58 EI----LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKT 113
I + GK K E+I KE E S +F EK L T+ T
Sbjct: 1683 RIRENYSAMIFETIVDGKLK----TEKIFKEINEHSTSYTFRSEKG-LLS-----ATQFT 1732
Query: 114 EVDVDEAVTTT--APIYKQI 131
+ A+T A ++ +
Sbjct: 1733 QP----ALTLMEKA-AFEDL 1747
Score = 30.8 bits (69), Expect = 0.12
Identities = 16/118 (13%), Positives = 44/118 (37%), Gaps = 35/118 (29%)
Query: 1 VQLLLTRWTLDQ------EVGGSS-------PSQ-GGTITDEHIKMSLKSAVEDKIRRKM 46
V+++ R Q E+G S+ P + + + E ++ V +++ ++
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ-----YVVERVGKRT 1837
Query: 47 ------------NEQKVQAQEE--IEILKQTENELNQGKFKLARMFE--RIDKEKAEL 88
N+Q V A + ++ + N + K + + + +++ + L
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.009
Identities = 13/90 (14%), Positives = 36/90 (40%)
Query: 25 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKE 84
I +++ + + + + + + + ++E L+ +E E ++ + E I K
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 85 KAELERSISFLKEKETELDEILAVLTEKTE 114
+ EL ++ + K E D+ +
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Score = 33.2 bits (76), Expect = 0.017
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 26 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 85
T++ + + ++ + + + QEEI L++ ++ + + E DK K
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYK 1018
Query: 86 AELERSISFLKEKETELDEILAVLTEKTEVDVDEA 120
E E+ +S LKE+ T L L + E
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Score = 28.2 bits (63), Expect = 0.81
Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 27 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK--- 83
+++ + + + +K+ + + ++ EN++ Q + K+ +
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 84 EKAELERSISFLKEKETELDEILAVLTEKTE 114
+ LE + S EK E L + E+ +
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Score = 25.8 bits (57), Expect = 6.4
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 24 TITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 83
+ + DK + + + + +E+ +LK + ELN+ A+ +
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Query: 84 EKAELERSISFLKEKETELDE 104
+K E K+ E +L++
Sbjct: 1059 KKLVEE-----TKQLELDLND 1074
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 33.7 bits (78), Expect = 0.009
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 19 PSQGGTITDEHI-KM---SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL 74
PS G +TD I M S+ A +D R + EQKV+A +E L L
Sbjct: 112 PSYG--LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLE---SLHGALAADAALL 166
Query: 75 ARMFERIDKEKAELERSISFLKE--KETELDEI 105
+ E+ ++ + + L E + ++D I
Sbjct: 167 S------AAERQVIDDAAAHLSEVAQGDDVDAI 193
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 33.1 bits (76), Expect = 0.015
Identities = 11/75 (14%), Positives = 22/75 (29%)
Query: 37 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 96
+ D IR KM + + + + K A +E + L+
Sbjct: 131 EISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ 190
Query: 97 EKETELDEILAVLTE 111
+ E + + L
Sbjct: 191 KLEDDAKDNQQKLEA 205
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.1 bits (73), Expect = 0.042
Identities = 17/88 (19%), Positives = 38/88 (43%)
Query: 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99
K++ K + + ++ +++ EL + K KL + ++ AEL+ I+ LK +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 100 TELDEILAVLTEKTEVDVDEAVTTTAPI 127
+ +E L + E + + I
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKI 1118
Score = 31.7 bits (72), Expect = 0.050
Identities = 12/78 (15%), Positives = 33/78 (42%)
Query: 37 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 96
+ + K+ +++ +E + L E + L ++ + + +ELE + +
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 97 EKETELDEILAVLTEKTE 114
+ EL++I L ++
Sbjct: 1053 KSRQELEKIKRKLEGESS 1070
Score = 31.3 bits (71), Expect = 0.067
Identities = 13/76 (17%), Positives = 37/76 (48%)
Query: 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
E++ +++ +K + Q+++ L++ E + KL D + ++E I ++++
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 99 ETELDEILAVLTEKTE 114
+L + +L E+
Sbjct: 999 NNKLTKERKLLEERVS 1014
Score = 29.0 bits (65), Expect = 0.48
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
E+ R+K+ +KV A +I+ ++ + KL KE+ LE +S L
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL-------TKERKLLEERVSDLTTN 1019
Query: 99 ETELDEILAVLT---EKTEVDVDE 119
E +E LT K E + E
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISE 1043
Score = 27.1 bits (60), Expect = 1.9
Identities = 10/83 (12%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 35 KSAVEDKIRRKMNEQKV---QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERS 91
+ ++ ++ +K E + + ++E ++ + + ++ + E ++ EKA ++
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Query: 92 ISFLKEKETELDEILAVLTEKTE 114
++ EL+ + L + +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLD 1165
Score = 27.1 bits (60), Expect = 2.3
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106
QK A ++I L+ ++L + + +K+K +L + LK + + +
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 107 AVLTEKTEVDVDE 119
A E D +
Sbjct: 1168 ATQQELRGSDYKD 1180
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/73 (15%), Positives = 34/73 (46%)
Query: 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
E ++ + E +V+ + + L++ +E+ + +++ EK ++++ + L+E+
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 99 ETELDEILAVLTE 111
E + L
Sbjct: 964 LEEEEAARQKLQL 976
Score = 25.2 bits (55), Expect = 9.6
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 28 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL---ARMFERIDKE 84
E IK L+ D + ++ E + Q E L + E EL +L K+
Sbjct: 1059 EKIKRKLEGESSD-LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 85 KAELERSISFLKEK 98
ELE IS L+E
Sbjct: 1118 IRELESHISDLQED 1131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.16
Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 2 QLLLTRWTLDQEVGGS-SPSQGGTITDEHIKMSL-KSAVEDKIRRKMNEQKVQAQEEIE- 58
++LLT T ++V S + I+ +H M+L V+ + + ++ + E+
Sbjct: 267 KILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 59 --------ILKQTENELNQGKFKLARMFERIDKEKAE--LERSISFLKEKET-ELDEILA 107
I + + L ++ ++ +K +E S++ L+ E ++ + L+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 108 VLTEKTEVDVDEAV 121
V + +
Sbjct: 380 VFPP--SAHIPTIL 391
Score = 29.8 bits (66), Expect = 0.29
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 20/92 (21%)
Query: 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID-KEKAELERSISFLKEKETELD 103
+ E + Q ++ + + + F + D K+ ++ +SI KE E+D
Sbjct: 10 ETGEHQYQYKDILSVFED--------AFV-----DNFDCKDVQDMPKSI-LSKE---EID 52
Query: 104 EILAVLTEKTEVD--VDEAVTTTAPIYKQIVN 133
I+ + ++ + ++ V
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Score = 27.9 bits (61), Expect = 1.3
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 27/101 (26%)
Query: 42 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSIS----FLKE 97
+ +K+ IL N L Q K + + I + ER ++ FL +
Sbjct: 503 LEQKIRHDSTAWNASGSIL----NTLQQ--LKFYKPY--ICDNDPKYERLVNAILDFLPK 554
Query: 98 KETEL------DEI-LAVLTEKTEVDVDEAVTTTAPIYKQI 131
E L D + +A++ E + +EA +KQ+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAI-FEEA-------HKQV 587
Score = 26.4 bits (57), Expect = 3.7
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 36/143 (25%)
Query: 2 QLLLTRWTLDQEVGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQK----------V 51
Q LL + + S +IK+ + S ++ ++RR + + V
Sbjct: 203 QKLLYQIDPNWTSRSDHSS--------NIKLRIHS-IQAELRRLLKSKPYENCLLVLLNV 253
Query: 52 QAQEEIE-------ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104
Q + IL T + ++ L+ L E +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFK------QVTDFLSAATTTHISLDHHSMTLTPDEVK--S 305
Query: 105 ILA-VLTEKTEVDVDEAVTTTAP 126
+L L + + D+ V TT P
Sbjct: 306 LLLKYLDCRPQ-DLPREVLTTNP 327
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.4 bits (69), Expect = 0.18
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 35 KSAVEDKIRRKMNEQKVQAQEEIEILKQTEN-----ELNQGKFKLARMFERIDKEKAELE 89
+ ++ + V Q+ ILK+ EN + G + + + LE
Sbjct: 862 HAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 921
Query: 90 RSISFLKEKETELDEILAVLTEKTE 114
+ E + + L + +
Sbjct: 922 AFDGECQSLEGQSNSDLLSILAQLT 946
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 29.7 bits (68), Expect = 0.23
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
+++++ +A+ E+ ++++ L + R +DKE+ + +S +FL K
Sbjct: 145 QRLQKRAKGGDKEAKFELSVMEKILPVLENA--GMIRSVG-LDKEELQAIKSYNFLTLK 200
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 29.6 bits (67), Expect = 0.26
Identities = 10/95 (10%), Positives = 28/95 (29%)
Query: 28 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 87
+ +L+ ++ + + + QK + T + G + + +
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 927
Query: 88 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVT 122
LE + E + + L + + V
Sbjct: 928 LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP 962
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 29.7 bits (67), Expect = 0.28
Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 31/121 (25%)
Query: 23 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQG------------ 70
G + + K + K + + E++ + + G
Sbjct: 350 GQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAM 409
Query: 71 -------KFKLARMFERIDKE------KAELERSISFLKEKETELDEILAVLTEKTEVDV 117
+ +L R F D + EL +L+ EVD
Sbjct: 410 DRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLS------EVDK 463
Query: 118 D 118
+
Sbjct: 464 N 464
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.0 bits (65), Expect = 0.45
Identities = 7/73 (9%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 54 QEEIEILKQTENELNQGKFKLARMFERIDKEKAEL-ERSISFLKEKETELDEILAVLTEK 112
+ + L++ + +N G KL ++++ L + L ++ ++
Sbjct: 1860 TAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKT 1919
Query: 113 TEVDVDEAVTTTA 125
++ + + ++
Sbjct: 1920 SQELIGNCIISSI 1932
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 0.55
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 47 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 106
N+ + E+ + L++ + LN G KL ++ + L + L K + ++ L
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961
Query: 107 AVLTEKTE 114
+ + +
Sbjct: 1962 KQMVQDQQ 1969
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 28.2 bits (64), Expect = 0.73
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 82 DKEKAELERSISFLKEKETELDEILA 107
+ L++S + E L+ +
Sbjct: 285 QADLDLLQKSAKIVDENCKMLESTIG 310
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 28.4 bits (63), Expect = 0.78
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 54 QEEIEILKQTENELNQGKFKLARMFER--IDKEKAELERSISFLKEKETELDEILAVLTE 111
+ I+IL + + + K+ + ID+ RS + + E
Sbjct: 19 PDAIDILSKRYHPESPAMKKVLAINRYTGIDQ------RSSIGNPDHPLVNKPNPPTVKE 72
Query: 112 KTEVDVDEAV 121
EV + + V
Sbjct: 73 LHEVFMSDGV 82
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 28.1 bits (62), Expect = 0.84
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 113
N++N K+ FE + KE + LER + L +K + LD E+L ++ +
Sbjct: 387 GITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENER 446
Query: 114 EVDVDEA 120
+D ++
Sbjct: 447 TLDFHDS 453
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 28.0 bits (63), Expect = 0.94
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 40 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 99
D R +EI L+ N++ K + E +D+ A+ + + E E
Sbjct: 37 DTEWR-------TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89
Query: 100 TELDEILAVLTE 111
E++E+ +
Sbjct: 90 NEVEELKKKIDY 101
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 28.1 bits (62), Expect = 1.1
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 113
Q +LN+ K F +I+KE +E+E I L++ +T++D E+L L +
Sbjct: 368 QINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQH 427
Query: 114 EVDVDEA 120
+D+ ++
Sbjct: 428 TIDLTDS 434
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.1 bits (61), Expect = 1.8
Identities = 11/67 (16%), Positives = 32/67 (47%)
Query: 45 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 104
++++++ + + +E L+ N+L++ KL R + + + ++ + E EL +
Sbjct: 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK 93
Query: 105 ILAVLTE 111
+ L
Sbjct: 94 VEEELKN 100
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 26.7 bits (60), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 82 DKEKAELERSISFLKEKETELDEILA 107
DKE+ +L+ SI+ +K+ EILA
Sbjct: 295 DKEREQLQVSINAIKDLNKAAAEILA 320
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 26.5 bits (59), Expect = 2.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 DKIRRKMNEQKVQAQEEI-EILKQTENELNQGKF 72
KI E+K A++E E LK E +L +
Sbjct: 111 RKIWTSKGEEKEAAKKEFIEALKLLEEQLGDKTY 144
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.1
Identities = 8/65 (12%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 39 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE-LERSISFLKE 97
+ + E + +A++++E Q ++ E+++K K +F ++
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQS-------------EQVEKNKINNRIADKAFYQQ 148
Query: 98 KETEL 102
+ ++
Sbjct: 149 PDADI 153
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 26.1 bits (57), Expect = 3.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
N++N K+ F + KE LER I L +K
Sbjct: 47 GITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKK 83
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG,
transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Length = 157
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 74 LARMFERIDKEKAEL------ERSISFLKEKETELDEILAVLTEKTEVDVDE 119
+ ++FE + + + E +S + + L +I+ L++ +V VD+
Sbjct: 35 MRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIGDVTVDK 86
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A*
2exe_A 3nr9_A*
Length = 355
Score = 26.1 bits (58), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 41 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFE 79
KI R + + + A+ EI +LK+ + + + KF M +
Sbjct: 51 KIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSD 89
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 25.9 bits (58), Expect = 4.0
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 82 DKEKAELERSISFLKEKETELDEIL 106
+ EK + + ++ +K+ L L
Sbjct: 282 EDEKRKFDEAVQAVKKLVETLPPQL 306
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 25.8 bits (56), Expect = 4.3
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 58 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
E + + LN + +R+ EL I L EK
Sbjct: 43 EAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEK 83
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 26.0 bits (57), Expect = 4.6
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 27 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFER--IDKE 84
+ + L+ + DK + ++ K + L G+F + E+ +
Sbjct: 210 EYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIK 269
Query: 85 KAELERSISFLKEKETEL 102
+ER L E L
Sbjct: 270 DWGIERPARGLSGGERAL 287
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 25.9 bits (58), Expect = 4.7
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 52 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
+EE I+++ L + K + R + ++E + S+ L K
Sbjct: 181 AKKEEQAIIEKVYQYLTETK-QPIRKGDWSNREVEII-NSLYLLTAK 225
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 25.9 bits (58), Expect = 4.7
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 82 DKEKAELERSISFLKEKETELDEIL 106
E+ +L +S +++++ E+ + L
Sbjct: 285 TDEQEKLLQSRDYIQQRFDEIVDTL 309
>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase; ssgcid, beta helix,
acyltransferase, amino-acid biosynthesis, cytoplasm;
1.87A {Brucella suis}
Length = 304
Score = 25.9 bits (56), Expect = 5.1
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 14 VGGSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFK 73
+G G + SL+ +E + E E ++Q+ L++G+ +
Sbjct: 9 MGTLEAQTQGPSMTKPDLASLEKTIEKAFDERDGINTATRGEVREAVEQSLILLDRGEVR 68
Query: 74 LA 75
+A
Sbjct: 69 VA 70
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 25.6 bits (57), Expect = 5.5
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 82 DKEKAELERSISFLKEKETELDEILA 107
++EK + ++S+ + + + A
Sbjct: 304 EEEKKQFQKSVDDVMALNKAVAALQA 329
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 25.6 bits (57), Expect = 5.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 82 DKEKAELERSISFLKEKETELDEILAVL 109
EKA+L+ S + +L +
Sbjct: 284 ADEKAQLKTSAGHVHSNLDDLQRLRDEG 311
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 25.5 bits (55), Expect = 6.7
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 26 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFK---------LAR 76
++ KI K EQ A+ +++ K + K K + R
Sbjct: 461 APPKTFEKSMMNLQTKIDAK-KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Query: 77 MFERIDKEKAELE-----RSISFLKEKETELDE-ILAVLTEKTEVDVDEAVTTT 124
+ E++ K + + + I+ K LD I +K V +++ T
Sbjct: 520 LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 573
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 25.6 bits (57), Expect = 6.8
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 48 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 107
+ + ++ ++ ++ N++ + K E + A + K E L E A
Sbjct: 35 REVQELKKRLQEVQTERNQVAKRVPKAPP--EEKEALIARGKALGEEAKRLEEALREKEA 92
Query: 108 VLTE 111
L
Sbjct: 93 RLEA 96
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP:
h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 25.4 bits (55), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 60 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
+ Q +LN+ K F +I+KE +E+E I L++
Sbjct: 45 IDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKY 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 25.6 bits (57), Expect = 7.0
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 29/98 (29%)
Query: 27 DE---HIKMSLKSAVE--DKIRRKMNEQKVQAQEEIEI--------------LKQTENEL 67
DE ++M+L+SA E D + RK Q EIE LK E E+
Sbjct: 386 DEAAARLRMALESAPEEIDALERKK------LQLEIEREALKKEKDPDSQERLKAIEAEI 439
Query: 68 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 105
+ ++A++ ++E+ L + + + LDE+
Sbjct: 440 AKLTEEIAKLRAEWEREREILRK-LREAQH---RLDEV 473
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B*
3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B*
1jso_B* 2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B*
3lzf_B* 3r2x_B* 3sm5_B* ...
Length = 174
Score = 25.0 bits (54), Expect = 7.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 60 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
N++N K+ FE + KE + LER + L +K
Sbjct: 45 FDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKK 83
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA;
2.50A {Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 25.0 bits (54), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
Q +LN+ K F +I+KE +E+E I L++
Sbjct: 47 QINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKY 83
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 25.0 bits (54), Expect = 7.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
Q +LN+ K + FE ID E E+E+ I +
Sbjct: 47 QITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINW 83
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 25.1 bits (56), Expect = 8.1
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 38 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 97
+ ++ + + E + + ++ E K + + S++ L
Sbjct: 485 LSEEQYKLVKELEREIEKWKEFYKSE-------RVS-------VAVGGDTRSYSVATLMT 530
Query: 98 KETELDEILAVLTEKTEVD--VDEAV 121
LD++ + V E V
Sbjct: 531 MNYTLDDVKEKFGYEVPQHPYVKEEV 556
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 25.2 bits (54), Expect = 8.3
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 32 MSLKSAVEDKI---RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 88
MS + ++ I ++KM + + EIE Q +L K+ + +L
Sbjct: 1 MSELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDL 60
Query: 89 ERSISFLKEKETELDEILAVLTEK 112
E+ ++ E E E+
Sbjct: 61 EQKLASGAENPGEKKSFSERAAEE 84
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 25.3 bits (56), Expect = 8.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 41 KIRRKMNEQKV--QAQEEIEILKQTENELNQGKFKLARMFE 79
KI + N + A+ EI++L+ F+ +M E
Sbjct: 46 KIVK--NVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLE 84
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 25.0 bits (54), Expect = 8.4
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 62 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 98
+ +++N K+ + + ID E +E+E ++ + K
Sbjct: 47 KITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNK 83
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 25.1 bits (55), Expect = 8.6
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 52 QAQEEIEILKQTENELNQGKFKLARMFE 79
QAQ E+ +L+ + K+ + +
Sbjct: 96 QAQIEVRLLELMNKHDTEMKYYIVHLKR 123
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-biology, protei structure initiative; HET: PLP;
3.00A {Campylobacter jejuni subsp}
Length = 619
Score = 25.2 bits (55), Expect = 8.7
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 78 FERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVD 118
I AE+ +I+ E EL+ I+ + E+ + +
Sbjct: 139 LINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPN 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.325
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,878,299
Number of extensions: 103493
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 178
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.5 bits)