RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4582
         (133 letters)



>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 29.0 bits (64), Expect = 0.065
 Identities = 9/65 (13%), Positives = 27/65 (41%)

Query: 16 GSSPSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLA 75
          GSS S G ++   +    L  A  +    +  +  +   + + ++K+ +   +Q ++ + 
Sbjct: 1  GSSGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID 60

Query: 76 RMFER 80
              +
Sbjct: 61 NGVTK 65


>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 131

 Score = 27.8 bits (61), Expect = 0.23
 Identities = 13/79 (16%), Positives = 27/79 (34%)

Query: 43  RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 102
           R +  ++ V    E E+   +  E+   +  LA     I +           + E    +
Sbjct: 2   RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 61

Query: 103 DEILAVLTEKTEVDVDEAV 121
           D+++        +D   AV
Sbjct: 62  DDLITAHLRGWTLDRLPAV 80


>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 218

 Score = 27.0 bits (58), Expect = 0.79
 Identities = 10/80 (12%), Positives = 24/80 (30%)

Query: 19  PSQGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMF 78
           P  GG   +              +R    E  +   +E+ +  + E    +   ++ R  
Sbjct: 128 PEPGGRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLEGETAPVEENLEVFRFL 187

Query: 79  ERIDKEKAELERSISFLKEK 98
            R D       +++     +
Sbjct: 188 SRADLLPERPAKALVKAMPR 207


>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
           gondii [TaxId: 5811]}
          Length = 174

 Score = 25.2 bits (54), Expect = 2.9
 Identities = 4/26 (15%), Positives = 13/26 (50%)

Query: 82  DKEKAELERSISFLKEKETELDEILA 107
           ++EK + ++S+  +      +  + A
Sbjct: 148 EEEKKQFQKSVDDVMALNKAVAALQA 173


>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
           dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
           1583]}
          Length = 163

 Score = 24.0 bits (51), Expect = 6.2
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query: 82  DKEKAELERSISFLKEKETELDEIL 106
             E+ +L +S  +++++  E+ + L
Sbjct: 139 TDEQEKLLQSRDYIQQRFDEIVDTL 163


>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 315

 Score = 24.0 bits (52), Expect = 8.1
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 23  GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILK 61
           G          L     +  R+ +  ++ Q    +E+L 
Sbjct: 272 GYDAVFQKHSDLSDEFLESSRKSLKLEERQFNRLVEMLL 310


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.325 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,738
Number of extensions: 19400
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 44
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.7 bits)