Query psy4583
Match_columns 78
No_of_seqs 85 out of 87
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 20:40:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05251 UPF0197: Uncharacteri 100.0 1.2E-40 2.5E-45 214.9 8.0 72 7-78 1-72 (77)
2 KOG4452|consensus 100.0 1.1E-40 2.5E-45 214.6 6.0 74 5-78 1-74 (79)
3 cd06550 TM_ABC_iron-siderophor 82.0 11 0.00023 27.4 7.3 29 49-77 78-106 (261)
4 PF06522 B12D: NADH-ubiquinone 76.0 4.9 0.00011 25.0 3.5 29 17-47 2-30 (73)
5 PF14316 DUF4381: Domain of un 73.1 12 0.00026 25.3 5.1 17 7-23 2-18 (146)
6 PF10966 DUF2768: Protein of u 71.2 22 0.00047 22.0 5.7 45 27-73 4-48 (58)
7 COG1108 ZnuB ABC-type Mn2+/Zn2 70.8 17 0.00037 27.8 6.0 28 49-76 84-111 (274)
8 PF14159 CAAD: CAAD domains of 66.1 11 0.00023 24.5 3.5 37 22-58 45-81 (90)
9 PRK03814 oxaloacetate decarbox 61.4 13 0.00029 24.1 3.3 21 57-77 6-26 (85)
10 PRK02919 oxaloacetate decarbox 61.3 13 0.00029 23.9 3.2 22 56-77 4-25 (82)
11 PF13807 GNVR: G-rich domain o 56.1 16 0.00035 22.4 2.9 18 58-75 62-79 (82)
12 PF12725 DUF3810: Protein of u 52.7 54 0.0012 25.3 5.9 40 10-50 14-53 (318)
13 PF00510 COX3: Cytochrome c ox 52.3 33 0.00072 25.4 4.5 52 16-76 120-172 (258)
14 TIGR02897 QoxC cytochrome aa3 51.9 62 0.0013 22.9 5.7 47 23-70 50-96 (190)
15 PF00950 ABC-3: ABC 3 transpor 51.0 34 0.00073 25.5 4.4 23 53-75 79-101 (257)
16 PF14256 YwiC: YwiC-like prote 50.8 72 0.0016 21.7 5.7 27 43-71 99-125 (129)
17 PF11833 DUF3353: Protein of u 50.4 37 0.00081 24.7 4.4 28 30-63 121-148 (194)
18 PF01226 Form_Nir_trans: Forma 50.4 23 0.0005 26.4 3.4 33 44-76 10-42 (250)
19 PRK02251 putative septation in 48.7 37 0.0008 22.4 3.8 28 15-42 27-54 (87)
20 MTH00219 COX3 cytochrome c oxi 48.4 68 0.0015 24.3 5.7 53 15-76 123-176 (262)
21 PF11833 DUF3353: Protein of u 47.5 54 0.0012 23.9 4.9 50 25-75 145-194 (194)
22 TIGR03017 EpsF chain length de 46.7 32 0.0007 26.5 3.8 24 53-76 395-418 (444)
23 MTH00130 COX3 cytochrome c oxi 45.4 1.2E+02 0.0025 23.0 6.6 49 15-70 122-171 (261)
24 MTH00099 COX3 cytochrome c oxi 45.0 85 0.0018 23.6 5.8 52 16-76 123-175 (261)
25 PRK11677 hypothetical protein; 44.6 39 0.00085 23.6 3.7 34 25-59 5-39 (134)
26 PF08078 PsaX: PsaX family; I 44.4 34 0.00074 19.5 2.7 17 25-41 18-34 (37)
27 PF11346 DUF3149: Protein of u 44.0 54 0.0012 18.9 3.6 23 25-47 16-39 (42)
28 TIGR00790 fnt formate/nitrite 43.8 39 0.00085 24.9 3.7 27 49-75 1-27 (239)
29 PRK00159 putative septation in 43.5 49 0.0011 21.9 3.8 29 14-42 25-53 (87)
30 MTH00083 COX3 cytochrome c oxi 42.4 1.1E+02 0.0024 23.0 6.0 51 16-76 119-170 (256)
31 PF06781 UPF0233: Uncharacteri 42.3 35 0.00077 22.4 3.0 28 15-42 26-53 (87)
32 PF13974 YebO: YebO-like prote 41.5 33 0.00071 22.4 2.7 20 28-47 4-23 (80)
33 PRK11056 hypothetical protein; 39.7 23 0.00049 24.8 1.8 46 13-69 30-75 (120)
34 PRK15204 undecaprenyl-phosphat 39.1 1.8E+02 0.004 23.4 7.1 56 17-73 47-105 (476)
35 PF14098 SSPI: Small, acid-sol 37.7 38 0.00082 21.3 2.4 35 42-78 8-46 (65)
36 PF07226 DUF1422: Protein of u 37.2 22 0.00048 24.8 1.5 19 13-31 30-48 (117)
37 PRK08378 hypothetical protein; 37.1 1.2E+02 0.0027 20.0 5.8 36 28-70 9-44 (93)
38 COG2116 FocA Formate/nitrite f 36.9 41 0.00089 26.0 3.0 29 48-76 21-49 (265)
39 MTH00189 COX3 cytochrome c oxi 35.6 1.3E+02 0.0028 22.7 5.5 53 15-76 121-174 (260)
40 TIGR03770 anch_rpt_perm anchor 35.5 1.2E+02 0.0026 22.7 5.2 25 51-75 89-113 (270)
41 PRK09713 focB putative formate 35.4 57 0.0012 25.1 3.6 28 48-75 25-52 (282)
42 TIGR03867 MprA_tail MprA prote 35.3 42 0.00092 18.0 2.1 15 23-37 8-22 (27)
43 MTH00075 COX3 cytochrome c oxi 34.6 2E+02 0.0044 21.7 6.6 52 16-76 123-175 (261)
44 PF01810 LysE: LysE type trans 34.4 1.5E+02 0.0032 20.0 6.9 48 27-75 137-188 (191)
45 PRK10805 formate transporter; 34.4 52 0.0011 25.3 3.2 29 47-75 24-52 (285)
46 PRK10764 potassium-tellurite e 34.4 1.4E+02 0.003 22.7 5.5 51 13-76 189-239 (324)
47 TIGR00847 ccoS cytochrome oxid 33.7 57 0.0012 19.5 2.7 17 62-78 8-24 (51)
48 PF15038 Jiraiya: Jiraiya 33.3 47 0.001 24.4 2.7 21 56-76 132-152 (175)
49 PF12670 DUF3792: Protein of u 33.3 1E+02 0.0022 20.3 4.1 28 13-40 30-57 (116)
50 COG1784 Predicted membrane pro 33.2 47 0.001 27.4 2.9 48 14-70 120-167 (395)
51 TIGR02842 CyoC cytochrome o ub 32.8 1.5E+02 0.0032 20.7 5.1 46 27-75 44-89 (180)
52 PRK02935 hypothetical protein; 32.3 1.6E+02 0.0036 20.3 5.1 30 12-41 4-33 (110)
53 PF14007 YtpI: YtpI-like prote 32.3 89 0.0019 20.5 3.7 38 33-70 4-41 (89)
54 MTH00189 COX3 cytochrome c oxi 32.1 2.2E+02 0.0048 21.4 6.7 16 26-41 127-142 (260)
55 PF03419 Peptidase_U4: Sporula 31.9 2.2E+02 0.0047 21.3 6.7 39 36-74 66-104 (293)
56 PF12046 DUF3529: Protein of u 31.6 58 0.0013 23.9 3.0 23 25-51 10-32 (173)
57 MTH00052 COX3 cytochrome c oxi 31.5 1.8E+02 0.0038 21.9 5.6 52 15-75 123-175 (262)
58 cd01665 Cyt_c_Oxidase_III Cyto 31.4 2.2E+02 0.0047 21.1 6.7 53 15-76 106-159 (243)
59 TIGR00400 mgtE Mg2+ transporte 31.0 60 0.0013 25.8 3.2 20 51-70 352-371 (449)
60 PF12351 Fig1: Ca2+ regulator 31.0 2E+02 0.0043 20.5 6.4 49 24-73 79-129 (182)
61 KOG0860|consensus 30.7 1E+02 0.0022 21.4 3.9 26 53-78 91-116 (116)
62 TIGR03007 pepcterm_ChnLen poly 30.6 82 0.0018 24.8 3.8 20 56-75 415-434 (498)
63 TIGR01006 polys_exp_MPA1 polys 30.5 95 0.002 21.9 3.8 23 53-75 173-195 (226)
64 PF05571 DUF766: Protein of un 30.3 1.3E+02 0.0027 23.9 4.8 31 18-48 44-74 (296)
65 PF07297 DPM2: Dolichol phosph 30.3 1.1E+02 0.0024 19.7 3.8 40 11-50 35-75 (78)
66 cd02432 Nodulin-21_like_1 Nodu 30.1 2.2E+02 0.0049 20.8 6.2 46 26-72 170-216 (218)
67 PF06295 DUF1043: Protein of u 29.3 98 0.0021 20.9 3.6 33 26-59 2-35 (128)
68 PF11118 DUF2627: Protein of u 28.2 60 0.0013 21.2 2.3 32 13-44 32-64 (77)
69 PRK13499 rhamnose-proton sympo 28.1 1.7E+02 0.0036 23.3 5.2 48 23-70 137-188 (345)
70 cd02863 Ubiquinol_oxidase_III 27.8 2.2E+02 0.0048 20.0 5.8 47 23-70 48-94 (186)
71 COG3630 OadG Na+-transporting 27.8 96 0.0021 20.5 3.2 16 62-77 10-25 (84)
72 MTH00155 COX3 cytochrome c oxi 27.6 1.9E+02 0.004 21.7 5.2 52 16-76 121-173 (255)
73 PF14348 DUF4400: Domain of un 27.3 74 0.0016 22.4 2.8 24 16-39 172-195 (198)
74 PF10066 DUF2304: Uncharacteri 27.3 1.4E+02 0.003 19.5 4.0 35 26-60 68-104 (115)
75 PRK09543 znuB high-affinity zi 26.8 1.5E+02 0.0032 22.0 4.5 25 52-76 78-102 (261)
76 PF02687 FtsX: FtsX-like perme 26.7 1.5E+02 0.0032 17.6 6.0 24 52-75 45-68 (121)
77 TIGR00816 tdt C4-dicarboxylate 26.6 1.9E+02 0.0042 21.6 5.1 58 14-76 188-245 (320)
78 MTH00039 COX3 cytochrome c oxi 26.5 2.3E+02 0.0049 21.4 5.5 52 15-75 121-173 (260)
79 COG3766 Predicted membrane pro 26.3 1.7E+02 0.0036 20.9 4.4 39 23-61 9-47 (133)
80 PF01790 LGT: Prolipoprotein d 26.2 2.6E+02 0.0057 20.4 6.8 57 16-76 10-66 (256)
81 PF09489 CbtB: Probable cobalt 25.8 1.6E+02 0.0035 17.7 3.9 24 53-76 7-30 (54)
82 PF07332 DUF1469: Protein of u 25.7 1.5E+02 0.0032 18.9 3.8 24 52-75 32-55 (121)
83 PRK13108 prolipoprotein diacyl 25.2 2.4E+02 0.0052 23.3 5.8 42 28-69 28-69 (460)
84 PF04276 DUF443: Protein of un 25.0 2.6E+02 0.0057 20.0 6.4 66 11-76 77-157 (199)
85 MTH00118 COX3 cytochrome c oxi 25.0 2.4E+02 0.0051 21.3 5.3 53 15-76 122-175 (261)
86 cd01665 Cyt_c_Oxidase_III Cyto 24.9 2.2E+02 0.0048 21.1 5.1 17 25-41 111-127 (243)
87 PF13373 DUF2407_C: DUF2407 C- 24.9 1.1E+02 0.0024 21.3 3.3 28 50-77 84-111 (140)
88 PF06679 DUF1180: Protein of u 24.5 1E+02 0.0022 22.3 3.1 28 25-52 97-124 (163)
89 PF15071 TMEM220: Transmembran 24.3 2.1E+02 0.0046 18.7 6.2 42 29-70 51-99 (104)
90 MTH00130 COX3 cytochrome c oxi 24.2 2.9E+02 0.0063 20.9 5.7 27 16-42 118-144 (261)
91 TIGR02854 spore_II_GA sigma-E 24.0 3.2E+02 0.007 20.7 6.7 38 35-72 65-102 (288)
92 PF00510 COX3: Cytochrome c ox 23.9 3E+02 0.0066 20.3 7.2 28 15-42 114-141 (258)
93 MTH00075 COX3 cytochrome c oxi 23.8 2.4E+02 0.0051 21.3 5.1 17 26-42 128-144 (261)
94 PRK09174 F0F1 ATP synthase sub 23.6 1.6E+02 0.0035 21.4 4.1 12 13-24 43-54 (204)
95 COG1271 CydA Cytochrome bd-typ 23.6 2.3E+02 0.005 23.7 5.4 56 13-70 318-373 (457)
96 PF03597 CcoS: Cytochrome oxid 23.4 1E+02 0.0023 17.7 2.5 17 62-78 7-23 (45)
97 PF14362 DUF4407: Domain of un 23.2 2.9E+02 0.0062 20.5 5.4 33 15-47 8-42 (301)
98 PF04688 Phage_holin: Phage ly 22.7 1.2E+02 0.0027 17.6 2.7 25 16-40 6-30 (47)
99 PF08636 Pkr1: ER protein Pkr1 22.5 1.5E+02 0.0032 19.0 3.3 25 25-49 49-73 (75)
100 PF02158 Neuregulin: Neureguli 22.3 29 0.00063 28.7 0.0 24 25-54 15-40 (404)
101 PRK12586 putative monovalent c 22.1 1.3E+02 0.0028 21.3 3.3 22 55-77 4-25 (145)
102 COG1271 CydA Cytochrome bd-typ 22.0 4.1E+02 0.009 22.2 6.6 51 10-60 174-224 (457)
103 PLN02194 cytochrome-c oxidase 22.0 3.1E+02 0.0067 20.8 5.5 15 56-70 160-174 (265)
104 COG1007 NuoN NADH:ubiquinone o 21.6 4.9E+02 0.011 21.8 7.0 21 55-75 154-174 (475)
105 PF01769 MgtE: Divalent cation 21.6 1.6E+02 0.0034 19.3 3.4 25 44-68 28-52 (135)
106 MTH00009 COX3 cytochrome c oxi 21.3 2.8E+02 0.0061 20.9 5.1 52 15-75 120-172 (259)
107 MTH00052 COX3 cytochrome c oxi 21.2 3.6E+02 0.0079 20.2 6.7 16 26-41 129-144 (262)
108 MTH00039 COX3 cytochrome c oxi 21.2 3.7E+02 0.008 20.3 6.7 14 27-40 128-141 (260)
109 PRK11715 inner membrane protei 21.2 2.4E+02 0.0051 23.3 5.0 39 27-67 306-344 (436)
110 MTH00141 COX3 cytochrome c oxi 20.9 3.5E+02 0.0077 20.1 5.5 48 16-70 121-169 (259)
111 PF06609 TRI12: Fungal trichot 20.7 2.3E+02 0.005 24.1 5.0 44 26-69 273-323 (599)
112 TIGR02184 Myco_arth_vir_N Myco 20.7 54 0.0012 18.3 0.9 23 47-69 5-27 (33)
113 PRK02955 small acid-soluble sp 20.7 37 0.0008 21.7 0.2 29 50-78 16-48 (68)
114 PF15055 DUF4536: Domain of un 20.6 48 0.001 19.6 0.7 28 41-70 19-46 (47)
115 MTH00024 COX3 cytochrome c oxi 20.2 3.5E+02 0.0076 20.4 5.4 52 16-76 123-175 (261)
116 COG3944 Capsular polysaccharid 20.2 2E+02 0.0044 22.1 4.1 23 54-76 172-194 (226)
117 PF06123 CreD: Inner membrane 20.2 2.6E+02 0.0055 23.0 4.9 39 27-67 300-338 (430)
118 PF12823 DUF3817: Domain of un 20.1 1.6E+02 0.0034 19.0 3.1 33 33-66 45-77 (92)
No 1
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=100.00 E-value=1.2e-40 Score=214.94 Aligned_cols=72 Identities=72% Similarity=1.306 Sum_probs=71.0
Q ss_pred ccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4583 7 YESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLLLW 78 (78)
Q Consensus 7 ~~~m~~y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFllLw 78 (78)
+|+|+||+|||||++||+||++||+||++++|||||||+|++|++||++||+++|++||+|+|||++|++||
T Consensus 1 ~~~m~~Y~sPV~p~~~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL~ 72 (77)
T PF05251_consen 1 IESMSRYTSPVNPALYPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLLW 72 (77)
T ss_pred CCcccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999
No 2
>KOG4452|consensus
Probab=100.00 E-value=1.1e-40 Score=214.62 Aligned_cols=74 Identities=65% Similarity=1.232 Sum_probs=73.5
Q ss_pred ccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4583 5 INYESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLLLW 78 (78)
Q Consensus 5 m~~~~m~~y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFllLw 78 (78)
||+++|+||+|||||++||||+.+||+||++|+||||++|||++|++||+.||++++++||+|+|||++|++||
T Consensus 1 m~~~~M~RYtsPVNpAvfPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl~aSvFlGFG~vFLLLw 74 (79)
T KOG4452|consen 1 MDISKMNRYTSPVNPAVFPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISLTASVFLGFGSVFLLLW 74 (79)
T ss_pred CchHHHhhhcCCCChhHhHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=82.02 E-value=11 Score=27.38 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4583 49 KLSRDLVKELVIALVAALFSGFGTLFLLL 77 (78)
Q Consensus 49 k~~r~l~KEl~ia~vAS~flGfG~lFllL 77 (78)
|+.++..+|..++.+-+.+++.|+.++-.
T Consensus 78 ~~~~~~~~~~~iGi~~~~~~~~~~~~ls~ 106 (261)
T cd06550 78 RGGLSPSKLILIGIVLSAFFSAGVILISL 106 (261)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999999988643
No 4
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=75.97 E-value=4.9 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.450 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4583 17 VNPAIFPHLTILLLGIGIFFTAWFFVYEVTS 47 (78)
Q Consensus 17 V~pa~yP~La~vLL~iGl~fta~FfiyevT~ 47 (78)
.+|++||.++++-.+.| ..+++..+..+.
T Consensus 2 ~~pel~PL~~~vg~a~~--~a~~~~~r~l~~ 30 (73)
T PF06522_consen 2 KHPELYPLFVIVGVAVG--GATFYLYRLLLT 30 (73)
T ss_pred CCccccchHHHHHHHHH--HHHHHHHHHHhc
Confidence 47999999886655544 556666666643
No 5
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=73.12 E-value=12 Score=25.34 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=13.8
Q ss_pred ccccccccCCCCCCchH
Q psy4583 7 YESMQRYVSPVNPAIFP 23 (78)
Q Consensus 7 ~~~m~~y~sPV~pa~yP 23 (78)
++.+...+.|-++++.|
T Consensus 2 L~~L~DI~~P~~vswwP 18 (146)
T PF14316_consen 2 LAQLRDIHLPPPVSWWP 18 (146)
T ss_pred ccccCCCCCCCCCCCCC
Confidence 35678888999999888
No 6
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=71.16 E-value=22 Score=21.98 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTL 73 (78)
Q Consensus 27 ~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~l 73 (78)
+.+.++|+++.+-..+|-... |.++-.=+.+++++|=+++.+|.+
T Consensus 4 iS~~~iglMfisv~~i~~sR~--Klk~~~lk~i~~~vAy~lli~~gl 48 (58)
T PF10966_consen 4 ISFGAIGLMFISVILIYFSRY--KLKGKFLKFIVSLVAYILLIVSGL 48 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999986553 445534456778999888888754
No 7
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=70.85 E-value=17 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 49 KLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 49 k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|++....+|..++.+.|.++++|++.+-
T Consensus 84 ~~~~~~~~D~aigiv~s~~~alGlvl~s 111 (274)
T COG1108 84 RRRSKLKEDTAIGIVFSSGLALGLVLLS 111 (274)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999998753
No 8
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=66.14 E-value=11 Score=24.50 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q psy4583 22 FPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKEL 58 (78)
Q Consensus 22 yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl 58 (78)
.|.+.-+|=.+|+..++||........+..+.+.+++
T Consensus 45 iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 45 IPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 4666677788999999999777777644444444443
No 9
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=61.40 E-value=13 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.727 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy4583 57 ELVIALVAALFSGFGTLFLLL 77 (78)
Q Consensus 57 El~ia~vAS~flGfG~lFllL 77 (78)
|++.-.+-=.++|+|++|++|
T Consensus 6 ~~l~~~~~lm~~GM~~VF~fL 26 (85)
T PRK03814 6 SLLVDAATLMLTGMGVVFIFL 26 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777889999999876
No 10
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=61.35 E-value=13 Score=23.95 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4583 56 KELVIALVAALFSGFGTLFLLL 77 (78)
Q Consensus 56 KEl~ia~vAS~flGfG~lFllL 77 (78)
-|++.-.+--.++|.|++|++|
T Consensus 4 ~~ll~~gl~lMvlGMg~VfvFL 25 (82)
T PRK02919 4 AELLGEGFTLMFLGMGFVLAFL 25 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777899999999886
No 11
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=56.13 E-value=16 Score=22.36 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4583 58 LVIALVAALFSGFGTLFL 75 (78)
Q Consensus 58 l~ia~vAS~flGfG~lFl 75 (78)
+.+|++.++++|.|..|+
T Consensus 62 l~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566666655553
No 12
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=52.75 E-value=54 Score=25.34 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=22.9
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4583 10 MQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKL 50 (78)
Q Consensus 10 m~~y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~ 50 (78)
+.+..+.+|-++-. +-++++++.++...+..+...-+.|+
T Consensus 14 l~~~~g~~PFSvgd-i~~~~~il~ll~~~~~~~~~~~k~~~ 53 (318)
T PF12725_consen 14 LRRLFGWFPFSVGD-ILYYLLILFLLYYLIRLIRKIFKKKK 53 (318)
T ss_pred HHHhccCcChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45667788877664 44455555555555555555444333
No 13
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=52.26 E-value=33 Score=25.36 Aligned_cols=52 Identities=33% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||-..|.+ +.+|++.|...+-.- +.+.+ ++ .|+...++.+++.+|. .|+.
T Consensus 120 ~~~~~~lp~lnT~lLl~Ss~~~~~a~--~~~~~--~~---~~~~~~~L~~t~~LG~--~Fl~ 172 (258)
T PF00510_consen 120 PLNPLGLPLLNTILLLSSSVTVTWAH--HALKR--GN---RKAARLWLLLTILLGL--LFLV 172 (258)
T ss_dssp -TTTTCHHHHHHHHHHHHHHHHHHHH--HHHHT--TB---HHHHHHHHHHHHHHHH--HHHH
T ss_pred chhccchHHHHhHhhhhhHHHHHHHH--HHHHh--hh---hhhhhhhHHHHHHHHH--HHHH
Confidence 4556667765 666666665443221 12211 12 2566677777776665 5543
No 14
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=51.90 E-value=62 Score=22.94 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 23 PHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 23 P~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
+.+...++...+..++++.+.-....-+.++ .|+....+.+++.+|.
T Consensus 50 ~~l~~~~lnT~vLl~SS~~~~~A~~a~~~~~-~~~~~~~L~~tl~lG~ 96 (190)
T TIGR02897 50 FELPLVLIMTFLLLFSSFTCGIAIYEMRKEN-QKLMMFWMIITLLLGA 96 (190)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 3455555666666666666655443211112 2566666777766665
No 15
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=50.99 E-value=34 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 53 DLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 53 ~l~KEl~ia~vAS~flGfG~lFl 75 (78)
+..+|-.++.+-|.++|.|++++
T Consensus 79 ~~~~d~~igiv~~~~~algvll~ 101 (257)
T PF00950_consen 79 KISEDAAIGIVFSFSFALGVLLL 101 (257)
T ss_pred CcchhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999876
No 16
>PF14256 YwiC: YwiC-like protein
Probab=50.83 E-value=72 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHHHH
Q psy4583 43 YEVTSTKLSRDLVKELVIALVAALFSGFG 71 (78)
Q Consensus 43 yevT~~k~~r~l~KEl~ia~vAS~flGfG 71 (78)
|++- .|++|++..|+...+ |+..+|..
T Consensus 99 ~~~~-~~~eRsLlndl~~i~-a~~l~~~~ 125 (129)
T PF14256_consen 99 YFAK-RKRERSLLNDLAAIA-AFSLMGPA 125 (129)
T ss_pred HHHH-hcCchhHHHhHHHHH-HHHHHHHH
Confidence 3444 389999999998744 44444443
No 17
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=50.39 E-value=37 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q psy4583 30 LGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALV 63 (78)
Q Consensus 30 L~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~v 63 (78)
|++|+....|| .+||+|++.|=+++++.
T Consensus 121 Lal~~~~~iyf------l~~K~~~~~rA~~~~~~ 148 (194)
T PF11833_consen 121 LALGLGACIYF------LNRKERKLGRAFLWTLG 148 (194)
T ss_pred HHHHHHHHHHH------HHHhcchHHHHHHHHHH
Confidence 66777777777 33678888888877554
No 18
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=50.37 E-value=23 Score=26.38 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=27.4
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 44 EVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 44 evT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
+....|-+|+..|-+.-|..|.++.|+|..+.+
T Consensus 10 ~~g~~k~~~~~~~~~~~~~lAG~~ig~g~~~~~ 42 (250)
T PF01226_consen 10 EAGEKKANRPPSKLFLRGILAGAFIGFGALLSL 42 (250)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888999999999999999999988754
No 19
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=48.70 E-value=37 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 15 sPV~pa~yP~La~vLL~iGl~fta~Ffi 42 (78)
.+.||.+|+.+.+-|+.+|+.-...|.+
T Consensus 27 ~~~sP~W~~~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 27 TKSNPRWFVPLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999976555544
No 20
>MTH00219 COX3 cytochrome c oxidase subunit III; Provisional
Probab=48.43 E-value=68 Score=24.27 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFP-HLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 15 sPV~pa~yP-~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.|+||...| .=+++|++.|...+..- +.+.. .+ .|+...++..++.+|. +|+.
T Consensus 123 ~~~~~~~ipllnT~iLL~Ss~tvt~a~--~a~~~--~~---~~~~~~~L~~Ti~LG~--~F~~ 176 (262)
T MTH00219 123 NPLNPFQVPLLNTAVLLASGVTVTWAH--HSLME--SN---HKEAQQGLLFTILLGL--YFTM 176 (262)
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHHH--HHHHh--CC---HHHHHHHHHHHHHHHH--HHHH
Confidence 345665666 33566666666544432 22221 11 2456666777666655 5553
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=47.46 E-value=54 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 25 LTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 25 La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
+++..|.+|.++.+..-..--.. --.....-|.+.++++-+++.+|..||
T Consensus 145 ~~~~~L~~G~~lGs~l~~~l~~~-~~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 145 WTLGGLVVGLILGSLLASWLPVD-IVPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-cCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45666677776665552111110 001456679999999999999999886
No 22
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.69 E-value=32 Score=26.47 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 53 DLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 53 ~l~KEl~ia~vAS~flGfG~lFll 76 (78)
+..+-+.+|++.++++|+|..|++
T Consensus 395 ~~~~~l~~~~~~Gl~lg~~~~~l~ 418 (444)
T TIGR03017 395 RLLLNLVLSIFLGMLLGIGFAFLA 418 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888888898888864
No 23
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=45.37 E-value=1.2e+02 Score=23.01 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=27.3
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
.|+||...|.+ +++|++.|...+-. .+.+... =.|+...++..++.+|.
T Consensus 122 ~~~~~~~~pllnT~iLL~Ss~tv~~A--~~a~~~~-----~~~~~~~~L~~Ti~LG~ 171 (261)
T MTH00130 122 TTLDPFEVPLLNTAVLLASGVTVTWA--HHSIMEG-----ERKQAIQSLTLTILLGF 171 (261)
T ss_pred cccCchhhhHHHHHHHHHHHHHHHHH--HHHHHhC-----CHHHHHHHHHHHHHHHH
Confidence 34566667744 77777777765522 2222221 12555666777766665
No 24
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=45.02 E-value=85 Score=23.64 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=27.0
Q ss_pred CCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFP-HLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP-~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||...| .=+++|++.|...+..= +.+.. ++ .|+...++..++.+|. .|+.
T Consensus 123 ~~~~~~~pllnT~lLL~Ss~tv~~a~--~a~~~--~~---~~~~~~~L~~Ti~LG~--~Fl~ 175 (261)
T MTH00099 123 PLNPLEVPLLNTSVLLASGVSITWAH--HSLME--GN---RKHMLQALFITILLGL--YFTL 175 (261)
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHHH--HHHHh--CC---HHHHHHHHHHHHHHHH--HHHH
Confidence 45666666 33566666666444332 22221 11 2556667777776665 5543
No 25
>PRK11677 hypothetical protein; Provisional
Probab=44.60 E-value=39 Score=23.58 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHH
Q psy4583 25 LTILLLGIGIFFTAWFFVYEVTST-KLSRDLVKELV 59 (78)
Q Consensus 25 La~vLL~iGl~fta~FfiyevT~~-k~~r~l~KEl~ 59 (78)
++++.+.||+++ ++|...-.+++ |+++++-+|+=
T Consensus 5 ~a~i~livG~ii-G~~~~R~~~~~~~~q~~le~eLe 39 (134)
T PRK11677 5 YALIGLVVGIII-GAVAMRFGNRKLRQQQALQYELE 39 (134)
T ss_pred HHHHHHHHHHHH-HHHHHhhccchhhHHHHHHHHHH
Confidence 566777777744 34444433333 56777877763
No 26
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=44.36 E-value=34 Score=19.52 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4583 25 LTILLLGIGIFFTAWFF 41 (78)
Q Consensus 25 La~vLL~iGl~fta~Ff 41 (78)
-+++||+|-+...++.|
T Consensus 18 Wa~llLaINflVAayYF 34 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYF 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67899999999988875
No 27
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=44.01 E-value=54 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=13.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhc
Q psy4583 25 LTILLLGIGIF-FTAWFFVYEVTS 47 (78)
Q Consensus 25 La~vLL~iGl~-fta~FfiyevT~ 47 (78)
+.++...+|+. +..|+|+|++-.
T Consensus 16 l~vI~~~igm~~~~~~~F~~k~~~ 39 (42)
T PF11346_consen 16 LIVIVFTIGMGVFFIRYFIRKMKE 39 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44555555554 566777887654
No 28
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=43.79 E-value=39 Score=24.86 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 49 KLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 49 k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
|-+|+..|-+.-|..|.++.|+|..+.
T Consensus 1 k~~~~~~~~~~~a~~AG~~i~~g~~~~ 27 (239)
T TIGR00790 1 KAALSLLNLLVLSILAGAFIALGLVFY 27 (239)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999997654
No 29
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=43.47 E-value=49 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=23.4
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy4583 14 VSPVNPAIFPHLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 14 ~sPV~pa~yP~La~vLL~iGl~fta~Ffi 42 (78)
..+-||.+|..+.+.|+.+|+.-...|.+
T Consensus 25 ~~~~sp~W~~~~m~glm~~GllWlvvyYl 53 (87)
T PRK00159 25 KAGPSSVWYVVLMLGLMLIGLAWLVVNYL 53 (87)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 35668999999999999999976655544
No 30
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=42.42 E-value=1.1e+02 Score=23.04 Aligned_cols=51 Identities=33% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||...|.+ +++|++.|...+..= +.+ |++| |+...++..++.+|. +|+.
T Consensus 119 ~~~~~~~pllnT~iLL~Ss~tvt~a~--~a~---~~~~---~~~~~~L~~Ti~LG~--~F~~ 170 (256)
T MTH00083 119 LVNYLGVPLLNTIILLSSGVSVTWSH--HSL---CLSN---KSCTNSLLLTCFLGL--YFTS 170 (256)
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHH--HHH---HHhh---HHHHHHHHHHHHHHH--HHHH
Confidence 3444445544 555666665544322 111 1222 456677777776655 5553
No 31
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=42.29 E-value=35 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 15 sPV~pa~yP~La~vLL~iGl~fta~Ffi 42 (78)
..-||.+|..+.+.|+.+|++-...|.+
T Consensus 26 ~~~sp~W~~p~m~~lmllGL~WiVvyYi 53 (87)
T PF06781_consen 26 AKPSPRWYAPLMLGLMLLGLLWIVVYYI 53 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhhhhc
Confidence 3678999999999999999975544443
No 32
>PF13974 YebO: YebO-like protein
Probab=41.49 E-value=33 Score=22.41 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy4583 28 LLLGIGIFFTAWFFVYEVTS 47 (78)
Q Consensus 28 vLL~iGl~fta~FfiyevT~ 47 (78)
.++..=+.+..||||--...
T Consensus 4 ~~~~~lv~livWFFVnRaSv 23 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRASV 23 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444455789999977653
No 33
>PRK11056 hypothetical protein; Provisional
Probab=39.75 E-value=23 Score=24.84 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=26.5
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSG 69 (78)
Q Consensus 13 y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flG 69 (78)
++|.||-+.||.+|.+|-.=. .||-- -++..-.++..-..|.+|+|
T Consensus 30 f~s~VpFSiFPlIaLvLavyc--------LyQ~Y---l~~~m~eg~P~~a~acFflG 75 (120)
T PRK11056 30 FSSIVPFSIFPLIALVLAVYC--------LHQRY---LNRPMPEGLPGLAAACFFLG 75 (120)
T ss_pred HccccccHHHHHHHHHHHHHH--------HHHHH---hcCCCCCCChHHHHHHHHHH
Confidence 468888999998888764321 23322 22344445555555555555
No 34
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=39.09 E-value=1.8e+02 Score=23.41 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH-HHHhccccch--hHHHHHHHHHHHHHHHHHHHH
Q psy4583 17 VNPAIFPHLTILLLGIGIFFTAWFFV-YEVTSTKLSR--DLVKELVIALVAALFSGFGTL 73 (78)
Q Consensus 17 V~pa~yP~La~vLL~iGl~fta~Ffi-yevT~~k~~r--~l~KEl~ia~vAS~flGfG~l 73 (78)
+|.........+...+++++.+||.+ |..- +++.| .-.||++-+.+.+.+..+..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~e~k~~~~~~~~~~~~~~a~~ 105 (476)
T PRK15204 47 IPQDQLDTRVITHFILSVVCVGWFWIRLRHY-TYRKPFWYELKEIFRTIVIFAIFDLALI 105 (476)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHcCCc-eecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555688888899877 3544 34444 334444444443443333333
No 35
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=37.73 E-value=38 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.582 Sum_probs=27.7
Q ss_pred HHHHhccccchhHHHHHHHHHHHH----HHHHHHHHHHHhC
Q psy4583 42 VYEVTSTKLSRDLVKELVIALVAA----LFSGFGTLFLLLW 78 (78)
Q Consensus 42 iyevT~~k~~r~l~KEl~ia~vAS----~flGfG~lFllLw 78 (78)
++.++. ++++=.||.+.-.+.| .+=|+|++|-..|
T Consensus 8 ~~nv~g--~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W 46 (65)
T PF14098_consen 8 IHNVKG--SSKEELKDTIEDAIQSGEEKALPGLGVLFEVIW 46 (65)
T ss_pred HHHccC--CCHHHHHHHHHHHHhccchhcCCchHHHHHHHH
Confidence 444443 6678889999999884 7889999999988
No 36
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=37.18 E-value=22 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=14.5
Q ss_pred ccCCCCCCchHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHLTILLLG 31 (78)
Q Consensus 13 y~sPV~pa~yP~La~vLL~ 31 (78)
.+|.|+-+.||.+|.+|-+
T Consensus 30 ~~s~VpFSiFPlIaLvLav 48 (117)
T PF07226_consen 30 FSSEVPFSIFPLIALVLAV 48 (117)
T ss_pred HhcccccHHHHHHHHHHHH
Confidence 4678888889888877643
No 37
>PRK08378 hypothetical protein; Provisional
Probab=37.11 E-value=1.2e+02 Score=20.03 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 28 LLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 28 vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
..+.+++..+|+..+ ..||+.+-.....+-|+++..
T Consensus 9 ~iLl~~ll~~A~~~v-------~~rdLl~avi~~~~~sll~al 44 (93)
T PRK08378 9 YIILALMIISAILAV-------EWRDLLAAAVGMAAVSLFASL 44 (93)
T ss_pred HHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHH
Confidence 345566777777744 446787777766666665543
No 38
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=36.86 E-value=41 Score=26.04 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=25.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 48 TKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 48 ~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.|.+|+..+=++.|..|.+|.|+|.+|..
T Consensus 21 ~k~~~~~~~~~l~ai~AG~~i~lg~~~~~ 49 (265)
T COG2116 21 KKATKSPLKLLLLAILAGAFIGLGFLFYI 49 (265)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999998854
No 39
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=35.63 E-value=1.3e+02 Score=22.71 Aligned_cols=53 Identities=32% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.|+||...|.+ +++|++.|...+..- +.+.. ++ .|+...++..++.+|. .|+.
T Consensus 121 ~~~~~~~~pllnT~iLL~Ss~tv~~a~--~a~~~--~~---~~~~~~~L~~ti~LG~--~Fl~ 174 (260)
T MTH00189 121 EPLNPFEVPLLNTAVLLSSGVTVTWAH--HSLME--GN---RKEAIQALTLTVILGV--YFTL 174 (260)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHH--HHHHh--CC---HHHHHHHHHHHHHHHH--HHHH
Confidence 34566667744 667777776544332 22211 11 2455566666666655 5543
No 40
>TIGR03770 anch_rpt_perm anchored repeat-type ABC transporter, permease subunit. This protein family is the permease subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in the adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous permease subunits outside the scope of this family include manganese transporter MntB in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=35.51 E-value=1.2e+02 Score=22.71 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 51 SRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 51 ~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
++...+|-.++.+-|.+++.|++++
T Consensus 89 ~~~~~~d~~igiv~s~~~algvill 113 (270)
T TIGR03770 89 NRRLKEDSIIGIFFVAAFALGLVII 113 (270)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhh
Confidence 3567788999999999999999875
No 41
>PRK09713 focB putative formate transporter; Provisional
Probab=35.38 E-value=57 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 48 TKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 48 ~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
.|-+|+..|-+..|..|-+++|+|..+.
T Consensus 25 ~k~~~~~~~~~~~~i~AG~~I~~g~~~~ 52 (282)
T PRK09713 25 HKIARSKVSVFLMAMSAGVFMAIGFTFY 52 (282)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777776654
No 42
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=35.31 E-value=42 Score=17.97 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy4583 23 PHLTILLLGIGIFFT 37 (78)
Q Consensus 23 P~La~vLL~iGl~ft 37 (78)
|.+|.+++++|++--
T Consensus 8 ~~~A~Lll~aG~~~~ 22 (27)
T TIGR03867 8 PWLAALLLAAGLLGF 22 (27)
T ss_pred HHHHHHHHHHHhhhH
Confidence 889999999998743
No 43
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=34.63 E-value=2e+02 Score=21.69 Aligned_cols=52 Identities=29% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||...|.+ +++|++.|...+.. .+.+-.+ + .|+...++..++.+|. .|+.
T Consensus 123 ~~~~~~~pllnT~iLL~Ss~tvt~a--~~a~~~~--~---~~~~~~~L~~Ti~LG~--~Fl~ 175 (261)
T MTH00075 123 PLDPFEVPLLNTAVLLASGVTVTWA--HHSIMQG--N---RKEAIQSLALTIILGL--YFTL 175 (261)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHH--HHHHHhC--C---HHHHHHHHHHHHHHHH--HHHH
Confidence 3455566655 66677777655442 2222221 1 2444556666665554 5553
No 44
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=34.41 E-value=1.5e+02 Score=20.01 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFFVYEVTSTK----LSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 27 ~vLL~iGl~fta~FfiyevT~~k----~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
+..+++-.....|+..+-....+ .+++-.+ .+--..+.++.++|+.++
T Consensus 137 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~li~~av~l~ 188 (191)
T PF01810_consen 137 VFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WINRISGLLLIGFAVYLL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 33344444455677776665432 2222233 666778888889988765
No 45
>PRK10805 formate transporter; Provisional
Probab=34.38 E-value=52 Score=25.25 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 47 STKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 47 ~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
..|-+|+..|-+.-|..|-++.|+|.++-
T Consensus 24 ~~k~~~~~~~~~~~ailAG~~Ig~g~~~~ 52 (285)
T PRK10805 24 VYKATKHPLKTFYLAITAGVFISIAFVFY 52 (285)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999998763
No 46
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=34.37 E-value=1.4e+02 Score=22.70 Aligned_cols=51 Identities=27% Similarity=0.288 Sum_probs=35.0
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 13 y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.+.|.+++.-|.+.+.+-=.|++..+|.-+.+ ...+ .++.++.|+|..+++
T Consensus 189 ~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~-----~~~~--------~~~~~l~~~~l~~~~ 239 (324)
T PRK10764 189 SSGELPTALRPSLGIQLAPAFVGCSAYLSVNG-----GEGD--------TLAKMLFGYGLLQLL 239 (324)
T ss_pred cCCCCChhHHHHHHHHHhhHHHHHHHHHHHcC-----cchh--------HHHHHHHHHHHHHHH
Confidence 35688889999999988888888888873322 1112 355667788876543
No 47
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=33.68 E-value=57 Score=19.45 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy4583 62 LVAALFSGFGTLFLLLW 78 (78)
Q Consensus 62 ~vAS~flGfG~lFllLw 78 (78)
.-.|+++|.+.+..++|
T Consensus 8 IpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44678888888888877
No 48
>PF15038 Jiraiya: Jiraiya
Probab=33.35 E-value=47 Score=24.44 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4583 56 KELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 56 KEl~ia~vAS~flGfG~lFll 76 (78)
-|..-|.++|+.+|.|.+|+.
T Consensus 132 f~~~~~~~~s~ilG~g~vfl~ 152 (175)
T PF15038_consen 132 FHSEPGIATSIILGSGAVFLG 152 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477778899999999999974
No 49
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=33.29 E-value=1e+02 Score=20.27 Aligned_cols=28 Identities=18% Similarity=0.673 Sum_probs=22.9
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHLTILLLGIGIFFTAWF 40 (78)
Q Consensus 13 y~sPV~pa~yP~La~vLL~iGl~fta~F 40 (78)
|..+++++..|.++.+...++.+.-++.
T Consensus 30 ~~~~~~e~~~~~~~~~i~~ls~~~GG~~ 57 (116)
T PF12670_consen 30 YFTSLSESILPWLVVIIYILSVFIGGFY 57 (116)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888988888888888887777
No 50
>COG1784 Predicted membrane protein [Function unknown]
Probab=33.18 E-value=47 Score=27.42 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=33.9
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 14 VSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 14 ~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
..|.-|..||++.++++.|-..+ +-|| |.+|+-..++++-+ +|=++|+
T Consensus 120 ~~~~y~~~~~~i~~~ll~I~~~~----~~~e----~~~r~~l~allvf~-~SG~lG~ 167 (395)
T COG1784 120 LGPLYPAIYPIIPVVLLTILAIM----ILYE----RGERNKLWALLVFL-LSGALGF 167 (395)
T ss_pred HhhhHHHHHhhHHHHHHHHHHHH----HHHH----hhhhhhHHHHHHHH-HhCccee
Confidence 46778899999999999876543 3344 67788889988844 4444443
No 51
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=32.77 E-value=1.5e+02 Score=20.74 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 27 ~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
..++...+..++++.+.-....-+ |+=-|+....+.+++.+|. .|+
T Consensus 44 ~~~~nT~vLl~Ss~~~~~A~~a~~-~~~~~~~~~~L~~t~~lG~--~Fl 89 (180)
T TIGR02842 44 FVLVETFLLLLSSITFGFAMLAMN-KKNKKMVILWLAITFLLGL--GFI 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH--HHH
Confidence 333444455555555544433211 1122455555666655554 454
No 52
>PRK02935 hypothetical protein; Provisional
Probab=32.27 E-value=1.6e+02 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=18.2
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy4583 12 RYVSPVNPAIFPHLTILLLGIGIFFTAWFF 41 (78)
Q Consensus 12 ~y~sPV~pa~yP~La~vLL~iGl~fta~Ff 41 (78)
.|+|-||.---=.|..++.+++.+-...||
T Consensus 4 k~ssKINkiRt~aL~lvfiG~~vMy~Giff 33 (110)
T PRK02935 4 KYSNKINKIRTFALSLVFIGFIVMYLGIFF 33 (110)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666654444556666666666667665
No 53
>PF14007 YtpI: YtpI-like protein
Probab=32.27 E-value=89 Score=20.47 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 33 GIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 33 Gl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
+.++++-|.+|--++..|+++...--..+.=|++.+|.
T Consensus 4 ~Ii~S~~~yvy~k~k~~Rs~~p~~k~~~~aka~ialG~ 41 (89)
T PF14007_consen 4 LIIISLVFYVYYKIKYFRSKDPMEKKWYSAKANIALGI 41 (89)
T ss_pred eHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 44555556666555555544444434445566666664
No 54
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=32.08 E-value=2.2e+02 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFF 41 (78)
Q Consensus 26 a~vLL~iGl~fta~Ff 41 (78)
.+-++-..+..++...
T Consensus 127 ~~pllnT~iLL~Ss~t 142 (260)
T MTH00189 127 EVPLLNTAVLLSSGVT 142 (260)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444443
No 55
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=31.89 E-value=2.2e+02 Score=21.26 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy4583 36 FTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLF 74 (78)
Q Consensus 36 fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lF 74 (78)
..+..++.=.-..|+-|...|-..+-.+.|+++|=+..+
T Consensus 66 l~s~lmv~iaf~~~~~~~~~k~~~~fy~~sf~~gG~~~~ 104 (293)
T PF03419_consen 66 LISVLMVLIAFGPKRWRQFIKALLIFYLVSFLLGGIMFA 104 (293)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433445567789999999988888888755544
No 56
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=31.65 E-value=58 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q psy4583 25 LTILLLGIGIFFTAWFFVYEVTSTKLS 51 (78)
Q Consensus 25 La~vLL~iGl~fta~FfiyevT~~k~~ 51 (78)
+-.+|++||+ ||||.-.++.|.+
T Consensus 10 ~LtlLl~iGL----~ffiraS~KdRt~ 32 (173)
T PF12046_consen 10 LLTLLLAIGL----FFFIRASVKDRTE 32 (173)
T ss_pred HHHHHHHhHH----HHHHHHhccccEE
Confidence 3456778888 6788887765544
No 57
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=31.50 E-value=1.8e+02 Score=21.93 Aligned_cols=52 Identities=33% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFP-HLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 15 sPV~pa~yP-~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
.|+||-..| .=+++|+..|...+.. .+.+.. +=.|+...++..++.+|. .|+
T Consensus 123 ~~~~~~~~pllnT~iLl~Ss~tvt~a--~~a~~~-----~~~~~~~~~L~~Ti~LG~--~Fl 175 (262)
T MTH00052 123 DPLNPFSVPLLNTAVLLSSGATVTWA--HHGIIS-----GKRKEAIIGLALTVALGL--LFT 175 (262)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHH--HHHHHh-----CCHHHHHHHHHHHHHHHH--HHH
Confidence 355666667 3466666666655422 222222 112555666777776665 454
No 58
>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=31.42 E-value=2.2e+02 Score=21.13 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.|+||-..|.+ +++|++.|...+.. .+.+.+ +=.|+...++..++.+|. .|+.
T Consensus 106 ~~~~~~~lp~lnT~iLL~Ss~tvt~a--~~a~~~-----~~~~~~~~~L~~Ti~LG~--~Fl~ 159 (243)
T cd01665 106 EPLNPFGIPLLNTIILLSSGATVTWA--HHALLL-----GNRKKAILGLILTILLGV--YFTG 159 (243)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHH--HHHHHh-----CCHHHHHHHHHHHHHHHH--HHHH
Confidence 34566566655 55566666554443 222221 123666777777777665 5543
No 59
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=31.03 E-value=60 Score=25.80 Aligned_cols=20 Identities=5% Similarity=0.260 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy4583 51 SRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 51 ~r~l~KEl~ia~vAS~flGf 70 (78)
.|.+.||+.++++-++.+|.
T Consensus 352 ~~~~~~e~~v~~~~g~~~g~ 371 (449)
T TIGR00400 352 FKVILREICVSILVGAILAS 371 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48889999999988888874
No 60
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=30.98 E-value=2e+02 Score=20.50 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccccchhHHH-HHHHHHHHHHHHHHHHH
Q psy4583 24 HLTILLLGIGIFFTAWFFV-YEVTSTKLSRDLVK-ELVIALVAALFSGFGTL 73 (78)
Q Consensus 24 ~La~vLL~iGl~fta~Ffi-yevT~~k~~r~l~K-El~ia~vAS~flGfG~l 73 (78)
-.+++|..++++..+||-- .|+.. .++|-+.| =+..+.+++++.+.|++
T Consensus 79 ~~aiiL~~~~~lll~~~~~~~~~~P-~~~~~v~~~~l~l~~~~~~l~~~~a~ 129 (182)
T PF12351_consen 79 MAAIILFLLCFLLLAYFPGSIPVLP-FPSRAVSKVALGLSFLSVLLWLVGAM 129 (182)
T ss_pred HHHHHHHHHHHHHHHHHHccCcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777731 23332 33342333 23455677777777765
No 61
>KOG0860|consensus
Probab=30.72 E-value=1e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4583 53 DLVKELVIALVAALFSGFGTLFLLLW 78 (78)
Q Consensus 53 ~l~KEl~ia~vAS~flGfG~lFllLw 78 (78)
++--=+.+++++.++++.++++.++|
T Consensus 91 n~Km~~il~~v~~i~l~iiii~~~~~ 116 (116)
T KOG0860|consen 91 NCKMRIILGLVIIILLVVIIIYIFLW 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445788999999999999999987
No 62
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.57 E-value=82 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4583 56 KELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 56 KEl~ia~vAS~flGfG~lFl 75 (78)
+=+.+|+++++++|.|..|+
T Consensus 415 ~~l~~g~~~Gl~lg~~~~~l 434 (498)
T TIGR03007 415 LLMLAGLLGGLGAGIGLAFL 434 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776665
No 63
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=30.52 E-value=95 Score=21.90 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 53 DLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 53 ~l~KEl~ia~vAS~flGfG~lFl 75 (78)
+..+-+.+|+++.+.+|+|..|+
T Consensus 173 ~~~~~~~~g~~~G~~~~~~~~~~ 195 (226)
T TIGR01006 173 NPKRNLLIGFLLGLVVALIIVLL 195 (226)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777665
No 64
>PF05571 DUF766: Protein of unknown function (DUF766); InterPro: IPR008485 This family consists of several eukaryotic proteins of unknown function.
Probab=30.33 E-value=1.3e+02 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4583 18 NPAIFPHLTILLLGIGIFFTAWFFVYEVTST 48 (78)
Q Consensus 18 ~pa~yP~La~vLL~iGl~fta~FfiyevT~~ 48 (78)
+|+.|-.+=..+.+.--...-||||--..++
T Consensus 44 ~~~~YDWlYL~FmallpL~lh~~fI~~~~~~ 74 (296)
T PF05571_consen 44 SPELYDWLYLGFMALLPLVLHWFFIDMYAKN 74 (296)
T ss_pred CCchhhHHHHHHHHHHHHHHHHheeeeeccc
Confidence 4678888888888888889999998665554
No 65
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=30.32 E-value=1.1e+02 Score=19.72 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=28.1
Q ss_pred ccccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4583 11 QRYVSPVNPAIFP-HLTILLLGIGIFFTAWFFVYEVTSTKL 50 (78)
Q Consensus 11 ~~y~sPV~pa~yP-~La~vLL~iGl~fta~FfiyevT~~k~ 50 (78)
.+.++-.+|..|- .+-.+++.+|+...+.|.=+-.-++++
T Consensus 35 ~~i~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vmik~~~ 75 (78)
T PF07297_consen 35 HPIHSFFPPREYAIILPIFLLLLGLSGVGTFLGYVMIKSKK 75 (78)
T ss_pred chHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455555677774 667778888998888887776666544
No 66
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=30.08 E-value=2.2e+02 Score=20.85 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHH
Q psy4583 26 TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF-SGFGT 72 (78)
Q Consensus 26 a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~f-lGfG~ 72 (78)
++++.++.++++.++ .-.++..+..|...+-++++++|... -++|-
T Consensus 170 s~~~~~~aL~~~G~~-~a~~~~~~~~~~~l~~~~iG~~aa~vty~iG~ 216 (218)
T cd02432 170 TIIATLLALALTGYV-SARLGGASVLRAILRNVIWGALAMALTYLIGR 216 (218)
T ss_pred HHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666665 33345545556777777777776533 44553
No 67
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.28 E-value=98 Score=20.86 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFFVYEVTST-KLSRDLVKELV 59 (78)
Q Consensus 26 a~vLL~iGl~fta~FfiyevT~~-k~~r~l~KEl~ 59 (78)
+++-+.||+++.. +...-..++ ++++++-+||-
T Consensus 2 ~~i~lvvG~iiG~-~~~r~~~~~~~~q~~l~~eL~ 35 (128)
T PF06295_consen 2 AIIGLVVGLIIGF-LIGRLTSSNQQKQAKLEQELE 35 (128)
T ss_pred hHHHHHHHHHHHH-HHHHHhccchhhHHHHHHHHH
Confidence 4566777774433 322222222 34456666653
No 68
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=28.20 E-value=60 Score=21.16 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred ccCCCCCCchHHH-HHHHHHHHHHHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHL-TILLLGIGIFFTAWFFVYE 44 (78)
Q Consensus 13 y~sPV~pa~yP~L-a~vLL~iGl~fta~Ffiye 44 (78)
..+|.+.-+.+.+ -+++.++|+.|.+-|+.|.
T Consensus 32 ~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~R 64 (77)
T PF11118_consen 32 LFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHR 64 (77)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHhHhhee
Confidence 3578777777755 4677789999999997765
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=28.07 E-value=1.7e+02 Score=23.29 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcc---ccchhHHHHHHHHHHHHHHHHH
Q psy4583 23 PHLTILLLGIGIFFTAWFFV-YEVTST---KLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 23 P~La~vLL~iGl~fta~Ffi-yevT~~---k~~r~l~KEl~ia~vAS~flGf 70 (78)
-.++++++.+|..++++=-. .|-..+ .+++|..|-+.+++++.+..++
T Consensus 137 ~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~ 188 (345)
T PRK13499 137 TLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSAC 188 (345)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHH
Confidence 46788888888888887311 121111 2346899999999988887664
No 70
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=27.84 E-value=2.2e+02 Score=20.02 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 23 PHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 23 P~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
+.+...++...+..++++.+.-..+.-+ |+=.|+....+..++.+|.
T Consensus 48 ~~~~~~~~nT~vLl~SS~~~~~a~~a~~-~~~~~~~~~~L~~t~~lG~ 94 (186)
T cd02863 48 FELPLVFIETFLLLLSSFTCGLAMIAMN-KNNKKKVILWLIITFLLGL 94 (186)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 3444555666666666666554443211 1223566666666666655
No 71
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=27.75 E-value=96 Score=20.47 Aligned_cols=16 Identities=31% Similarity=0.631 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4583 62 LVAALFSGFGTLFLLL 77 (78)
Q Consensus 62 ~vAS~flGfG~lFllL 77 (78)
.+--.++|.|.+|++|
T Consensus 10 g~~L~vlGmg~VflfL 25 (84)
T COG3630 10 GITLMVLGMGFVFLFL 25 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445688999998876
No 72
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=27.62 E-value=1.9e+02 Score=21.70 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=23.8
Q ss_pred CCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||-..|.+ +++|++.|...+..= +.+.. .+ .|+...++..++.+|. .|+.
T Consensus 121 ~~~~~~~p~lnT~iLL~Ss~tv~~a~--~a~~~--~~---~~~~~~~L~~t~~LG~--~Fl~ 173 (255)
T MTH00155 121 PFNPFQIPLLNTIILLSSGVTVTWAH--HSLME--NN---YKQATQSLFFTIILGI--YFTM 173 (255)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHH--HHHHh--CC---HHHHHHHHHHHHHHHH--HHHH
Confidence 3455556633 455555555443221 22211 12 2445555665555544 5553
No 73
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=27.35 E-value=74 Score=22.44 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=18.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHLTILLLGIGIFFTAW 39 (78)
Q Consensus 16 PV~pa~yP~La~vLL~iGl~fta~ 39 (78)
||||...|..+.+++++.+..++.
T Consensus 172 ~i~P~~~~l~~a~llg~av~~t~s 195 (198)
T PF14348_consen 172 SIPPNLVPLPAALLLGLAVWITAS 195 (198)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHH
Confidence 788888888777888777766654
No 74
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=27.31 E-value=1.4e+02 Score=19.51 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cccchhHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFFVYEVTS--TKLSRDLVKELVI 60 (78)
Q Consensus 26 a~vLL~iGl~fta~FfiyevT~--~k~~r~l~KEl~i 60 (78)
.++++++.+++.-.|..|-..+ .++.+++++|+.+
T Consensus 68 ~lf~~~i~~ll~~~~~l~~~is~le~~i~~L~qeiAl 104 (115)
T PF10066_consen 68 LLFYLGILFLLVIIFSLYVRISRLEEKIKRLAQEIAL 104 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333 3667788888765
No 75
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=26.83 E-value=1.5e+02 Score=21.97 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 52 RDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 52 r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
..+.+|-.++.+-|.+++.|+.++-
T Consensus 78 ~~~~~d~~iGi~~s~~~a~g~~l~s 102 (261)
T PRK09543 78 PQLAIDTLLGIMAHSALSLGLVVVS 102 (261)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 76
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=26.72 E-value=1.5e+02 Score=17.61 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 52 RDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 52 r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
|...+|...-...+..+|...-..
T Consensus 45 ~~~~~e~~~~~~~~~~~g~~~~~~ 68 (121)
T PF02687_consen 45 KMFLYEALLIALIGILIGILLGIL 68 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778877777777777554433
No 77
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=26.63 E-value=1.9e+02 Score=21.56 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=36.7
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 14 VSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 14 ~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
+.|.+++.-|.+.+.+--.|....++--+. +..+.+..++... .+|-++.|+|..+.+
T Consensus 188 ~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~----~~~~~~~~~~~~~-~~a~~l~~~~~~~~~ 245 (320)
T TIGR00816 188 HGLLPSALRPTMFINLAPIGVGIVALINIV----NHGEFITIKEPFL-ILAIILWGFGLWQLL 245 (320)
T ss_pred cCCCccchhhhhhheeccHHHHHHHHHHHh----hccchhhhhhhHH-HHHHHHHHHHHHHHH
Confidence 566788888888888888888777776431 1111122223222 677788888887654
No 78
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=26.51 E-value=2.3e+02 Score=21.42 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFP-HLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 15 sPV~pa~yP-~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
.|+||...| .=+++|++.|...+.. .+.+.. ++ .|+...++..++.+|. .|+
T Consensus 121 ~~~~~~~~pllnT~iLL~Ss~tvt~a--~~a~~~--~~---~~~~~~~L~~Ti~LG~--~Fl 173 (260)
T MTH00039 121 NPINPFLVPLLNTAVLLSSGVTITWS--HHSILE--GN---RTEAIQALFLTVLLGL--YFT 173 (260)
T ss_pred cccCchhhhHHHHHHHHHHHHHHHHH--HHHHHh--CC---HHHHHHHHHHHHHHHH--HHH
Confidence 356676677 4466666777655432 222222 11 2556666777766665 444
No 79
>COG3766 Predicted membrane protein [Function unknown]
Probab=26.35 E-value=1.7e+02 Score=20.92 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q psy4583 23 PHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIA 61 (78)
Q Consensus 23 P~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia 61 (78)
|..+--+..-.+++...++|||--..-++..+.||==+|
T Consensus 9 ~a~~~~~sv~~l~~i~F~~iy~~vTpyke~elIk~GN~A 47 (133)
T COG3766 9 LAFAAYFSVGVLMLILFLFIYEKVTPYKEWELIKEGNTA 47 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHccCHH
Confidence 333444444555666667899987767788888885444
No 80
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=26.21 E-value=2.6e+02 Score=20.42 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=36.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|++-..|+ ++.++|++...+...++..+.+-+++-..++.+..+-+.++|-=..+.+
T Consensus 10 pl~i~~yg----l~~~lg~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~l~gilGARl~~vl 66 (256)
T PF01790_consen 10 PLAIPWYG----LMMALGFLLALLLALRRARRRGLDPDQLEDLLLWALLGGILGARLFYVL 66 (256)
T ss_pred CchHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444443 5667788777777777777666666767777776666666665555443
No 81
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=25.77 E-value=1.6e+02 Score=17.73 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 53 DLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 53 ~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.-..+-++.++++.++|.+++|..
T Consensus 7 ~~~~~~~~~~~~a~~lg~~l~~~~ 30 (54)
T PF09489_consen 7 ARSASRLVQAAAAALLGLLLLYFV 30 (54)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788888888888764
No 82
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=25.69 E-value=1.5e+02 Score=18.92 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 52 RDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 52 r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
++..+-+....++.+++.+|.+|+
T Consensus 32 ~~~~~~~~~~~~a~vl~~~~l~~l 55 (121)
T PF07332_consen 32 RRLGRGLALLVLAAVLALLALLFL 55 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554
No 83
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.25 E-value=2.4e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q psy4583 28 LLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSG 69 (78)
Q Consensus 28 vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flG 69 (78)
++.++|+++..|...++..+.+.+++...++.+-.+-..++|
T Consensus 28 l~ialGil~a~~l~~r~~kr~g~~~~~i~dl~i~~vi~giIG 69 (460)
T PRK13108 28 VCVITGIIVALLIGDRRLTARGGERGMTYDIALWAVPFGLIG 69 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 577888887777766776665556666667665554444444
No 84
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=25.05 E-value=2.6e+02 Score=20.01 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=46.0
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccch-h--------------HHHHHHHHHHHHHHHHHHHHHH
Q psy4583 11 QRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSR-D--------------LVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 11 ~~y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r-~--------------l~KEl~ia~vAS~flGfG~lFl 75 (78)
.+|..-.|-..-+.+.++++.++++....+++|--.+.|++- + -.|+..-...+-++.|+.+.+.
T Consensus 77 r~~~~~~~i~~~~~i~~~i~~i~~l~v~~l~~~l~kk~k~~i~~~~~~~~~ki~l~P~~~K~~~~~lf~yi~~~~~~i~~ 156 (199)
T PF04276_consen 77 RPYIDYFNIQSSRIINIIICIIVILGVLILRIYLNKKLKKKIYNRNKNSKQKIILIPETFKNFFKNLFAYIFFLFFSIFL 156 (199)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceEEEEEEcchHHHHHHHHHHHHHHHHHHHH
Confidence 355556677777888899999999888877766443322110 1 3788888888888888877665
Q ss_pred H
Q psy4583 76 L 76 (78)
Q Consensus 76 l 76 (78)
+
T Consensus 157 ~ 157 (199)
T PF04276_consen 157 F 157 (199)
T ss_pred H
Confidence 4
No 85
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=25.04 E-value=2.4e+02 Score=21.32 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
.|+||...|.+ +++|++.|...+.. .+.+.+ .+ .|+...++..++.+|. .|+.
T Consensus 122 ~~~~~~~lpllnT~iLL~Ss~tvt~a--~~a~~~--~~---~~~~~~~L~~Ti~LG~--~F~~ 175 (261)
T MTH00118 122 KPLNPFEVPLLNTAVLLASGVTVTWA--HHSIME--GN---RKQAIQALTLTILLGL--YFTA 175 (261)
T ss_pred cccCccccHHHHHHHHHHHHHHHHHH--HHHHHh--CC---HHHHHHHHHHHHHHHH--HHHH
Confidence 35666667743 56666666654442 222222 12 2455566666666655 5543
No 86
>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=24.92 E-value=2.2e+02 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4583 25 LTILLLGIGIFFTAWFF 41 (78)
Q Consensus 25 La~vLL~iGl~fta~Ff 41 (78)
..+-++-..+..++...
T Consensus 111 ~~lp~lnT~iLL~Ss~t 127 (243)
T cd01665 111 FGIPLLNTIILLSSGAT 127 (243)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 34444555555555443
No 87
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=24.89 E-value=1.1e+02 Score=21.33 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4583 50 LSRDLVKELVIALVAALFSGFGTLFLLL 77 (78)
Q Consensus 50 ~~r~l~KEl~ia~vAS~flGfG~lFllL 77 (78)
.+....++++++++=-+|+|++.++.|+
T Consensus 84 ~~~~~~~dlL~G~liGff~g~~~~~~L~ 111 (140)
T PF13373_consen 84 SNSGHNDDLLWGLLIGFFFGLFSLFWLL 111 (140)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3456789999999999999999966654
No 88
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=24.51 E-value=1e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccch
Q psy4583 25 LTILLLGIGIFFTAWFFVYEVTSTKLSR 52 (78)
Q Consensus 25 La~vLL~iGl~fta~FfiyevT~~k~~r 52 (78)
--+|+.++......||.|.-+...|++|
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R~r~~~r 124 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFRLRRRNR 124 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3467788888888999888776544333
No 89
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=24.28 E-value=2.1e+02 Score=18.68 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHHH
Q psy4583 29 LLGIGIFFTAWFFVYEVTSTKL-------SRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 29 LL~iGl~fta~FfiyevT~~k~-------~r~l~KEl~ia~vAS~flGf 70 (78)
.+.+|.......++.+....+. +....+|..-.++.++-+++
T Consensus 51 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~EegRE~~GLli~~~~m~l 99 (104)
T PF15071_consen 51 ACSLWPFFLAGGVFEEVQQEILSMSSEKPHIEEGREFFGLLIVAIWMLL 99 (104)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhhhcccchhHHHHHHHHhHHHHHHHHHH
Confidence 6777888888888888776666 77889998888777776654
No 90
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=24.19 E-value=2.9e+02 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=12.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 16 PV~pa~yP~La~vLL~iGl~fta~Ffi 42 (78)
|......+...+-++-.-+..++.+.+
T Consensus 118 p~g~~~~~~~~~pllnT~iLL~Ss~tv 144 (261)
T MTH00130 118 PTGITTLDPFEVPLLNTAVLLASGVTV 144 (261)
T ss_pred CCCccccCchhhhHHHHHHHHHHHHHH
Confidence 333333333344445555555555544
No 91
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=24.02 E-value=3.2e+02 Score=20.66 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q psy4583 35 FFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGT 72 (78)
Q Consensus 35 ~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~ 72 (78)
++.+..+++=.-..|+-|+..|-+.+=.++|+++|=|.
T Consensus 65 ~~~s~lmv~iafg~~~~~~f~k~~~~fy~~sf~~gG~~ 102 (288)
T TIGR02854 65 LLYSFLIIFIAFGPKSLRFFLKLLFLFYFVSFATGGGL 102 (288)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444466778999999999888888877554
No 92
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=23.89 E-value=3e+02 Score=20.28 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=11.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 15 sPV~pa~yP~La~vLL~iGl~fta~Ffi 42 (78)
+|.+........+-++...+..++.+.+
T Consensus 114 pP~gi~~~~~~~lp~lnT~lLl~Ss~~~ 141 (258)
T PF00510_consen 114 PPVGIEPLNPLGLPLLNTILLLSSSVTV 141 (258)
T ss_dssp S-TT---TTTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccchhccchHHHHhHhhhhhHHHH
Confidence 3443333323444455555555555544
No 93
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=23.79 E-value=2.4e+02 Score=21.29 Aligned_cols=17 Identities=18% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFFV 42 (78)
Q Consensus 26 a~vLL~iGl~fta~Ffi 42 (78)
..-++...+..++.+.+
T Consensus 128 ~~pllnT~iLL~Ss~tv 144 (261)
T MTH00075 128 EVPLLNTAVLLASGVTV 144 (261)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 33345555555555533
No 94
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.64 E-value=1.6e+02 Score=21.40 Aligned_cols=12 Identities=8% Similarity=0.371 Sum_probs=9.7
Q ss_pred ccCCCCCCchHH
Q psy4583 13 YVSPVNPAIFPH 24 (78)
Q Consensus 13 y~sPV~pa~yP~ 24 (78)
--||.|+..||.
T Consensus 43 ~~p~~~~~~~~~ 54 (204)
T PRK09174 43 VFPPFDSTHYAS 54 (204)
T ss_pred CCCCCcchhccH
Confidence 368999999984
No 95
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=23.58 E-value=2.3e+02 Score=23.67 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=35.2
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 13 YVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 13 y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
+.|||-+..+-.=-++-++.++...+++..+..-+.|. +..|=++.+.+.+..+++
T Consensus 318 ~~P~v~~~f~sfriMvg~g~~~~~l~~~~~~~~~r~~~--~~~k~~l~~~i~~~pl~~ 373 (457)
T COG1271 318 EPPPVAHVFWSFRIMVGLGFLMILLALLALWLTLRGRI--DQSKWLLKALILAIPLPW 373 (457)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHHHhHHHH
Confidence 66777777776555555555555555555555544322 667777888888887765
No 96
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.42 E-value=1e+02 Score=17.73 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy4583 62 LVAALFSGFGTLFLLLW 78 (78)
Q Consensus 62 ~vAS~flGfG~lFllLw 78 (78)
.--|+++|.+.+..++|
T Consensus 7 ip~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 7 IPVSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677766666666
No 97
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.16 E-value=2.9e+02 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=13.9
Q ss_pred CCCCCCchHHHHHHHHHHHHH--HHHHHHHHHHhc
Q psy4583 15 SPVNPAIFPHLTILLLGIGIF--FTAWFFVYEVTS 47 (78)
Q Consensus 15 sPV~pa~yP~La~vLL~iGl~--fta~FfiyevT~ 47 (78)
+|-+...|=.+..+.+..+++ +.+.+++|.+..
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~ 42 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLAGLSGGYALYTVFG 42 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444443333333332 444455555554
No 98
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.69 E-value=1.2e+02 Score=17.55 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHLTILLLGIGIFFTAWF 40 (78)
Q Consensus 16 PV~pa~yP~La~vLL~iGl~fta~F 40 (78)
||+.+.--.+......+|..+.+|+
T Consensus 6 pi~e~~i~~~~s~v~t~~~~l~aww 30 (47)
T PF04688_consen 6 PIDEEQINQLISAVFTIVTALYAWW 30 (47)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445445556566667777778887
No 99
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=22.54 E-value=1.5e+02 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.543 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q psy4583 25 LTILLLGIGIFFTAWFFVYEVTSTK 49 (78)
Q Consensus 25 La~vLL~iGl~fta~FfiyevT~~k 49 (78)
+....++.|+..+--.|++|..+.|
T Consensus 49 ivL~~l~~~Lw~Sv~WFi~EL~~~~ 73 (75)
T PF08636_consen 49 IVLSFLALGLWASVNWFIAELKKAQ 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777777777788887644
No 100
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=22.35 E-value=29 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHhccccchhH
Q psy4583 25 LTILLLGIGIFFTA--WFFVYEVTSTKLSRDL 54 (78)
Q Consensus 25 La~vLL~iGl~fta--~FfiyevT~~k~~r~l 54 (78)
+++-+|.+|+++.+ |+ +|||+|.=
T Consensus 15 IcvaLlVVGi~Cvv~aYC------KTKKQRkk 40 (404)
T PF02158_consen 15 ICVALLVVGIVCVVDAYC------KTKKQRKK 40 (404)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHH------HhHHHHHH
Confidence 56778889988776 44 66777653
No 101
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.07 E-value=1.3e+02 Score=21.34 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy4583 55 VKELVIALVAALFSGFGTLFLLL 77 (78)
Q Consensus 55 ~KEl~ia~vAS~flGfG~lFllL 77 (78)
.+|+. -.++++++..|.+|.++
T Consensus 4 ~~~~~-~il~~ill~lG~~f~li 25 (145)
T PRK12586 4 TKEIF-SLIAAIMILLGSIIALI 25 (145)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 34443 57889999999998764
No 102
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=21.99 E-value=4.1e+02 Score=22.19 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=39.4
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Q psy4583 10 MQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVI 60 (78)
Q Consensus 10 m~~y~sPV~pa~yP~La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~i 60 (78)
...+.+|.-|..|.|-...-...|-++.+...-|+.-++|+.+..-|-+-+
T Consensus 174 ~a~i~NPs~~~~~~H~v~a~~~tgaf~v~gisAy~llk~r~~~~~k~~l~i 224 (457)
T COG1271 174 LAAVFNPSFPYRFVHTVLAAYLTGAFVVAGISAYYLLKGRDKEFAKKSLKI 224 (457)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445678888889999988888899999999999999987765544444444
No 103
>PLN02194 cytochrome-c oxidase
Probab=21.99 E-value=3.1e+02 Score=20.85 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy4583 56 KELVIALVAALFSGF 70 (78)
Q Consensus 56 KEl~ia~vAS~flGf 70 (78)
|+...++..++.+|.
T Consensus 160 ~~~~~~L~~Ti~LG~ 174 (265)
T PLN02194 160 KRAVYALVATVLLAL 174 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666665
No 104
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]
Probab=21.58 E-value=4.9e+02 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4583 55 VKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 55 ~KEl~ia~vAS~flGfG~lFl 75 (78)
.|=+.++.++|.++=+|.-++
T Consensus 154 lKYfvlGalsS~~~l~G~al~ 174 (475)
T COG1007 154 LKYFVLGALSSAFLLYGIALV 174 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999998765
No 105
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=21.56 E-value=1.6e+02 Score=19.28 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=14.4
Q ss_pred HHhccccchhHHHHHHHHHHHHHHH
Q psy4583 44 EVTSTKLSRDLVKELVIALVAALFS 68 (78)
Q Consensus 44 evT~~k~~r~l~KEl~ia~vAS~fl 68 (78)
|+...++.|.+.||+..+.+-++.+
T Consensus 28 ~~~~~~~~~~~~~e~~~~~~~~~~~ 52 (135)
T PF01769_consen 28 EIEPSPRKRVLLKELLAGLLNGLLL 52 (135)
T ss_dssp SS-SSSHHHHHHHHHHHHHH----H
T ss_pred CCCcchhHHHhhhhhhhhhhHHHHH
Confidence 3444455688999999988833333
No 106
>MTH00009 COX3 cytochrome c oxidase subunit III; Validated
Probab=21.27 E-value=2.8e+02 Score=20.87 Aligned_cols=52 Identities=29% Similarity=0.346 Sum_probs=26.5
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
.|+||...|.+ +++|++.|...+..- +.+.. +-.|+...++..++.+|. .|+
T Consensus 120 ~~~~~~~~p~lnT~iLL~Ss~tv~~a~--~a~~~-----~~~~~~~~~L~~Ti~LG~--~Fl 172 (259)
T MTH00009 120 EPLNPFSVPLLNTAVLLASGVTVTWAH--HSLIE-----GDRPEATQALILTVLLGA--YFT 172 (259)
T ss_pred cccCcccchHHHHHHHHHHHHHHHHHH--HHHHh-----CCHHHHHHHHHHHHHHHH--HHH
Confidence 34566566654 455555555444322 12211 123555667777776665 444
No 107
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=21.24 E-value=3.6e+02 Score=20.22 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFF 41 (78)
Q Consensus 26 a~vLL~iGl~fta~Ff 41 (78)
.+-++...+..++.+.
T Consensus 129 ~~pllnT~iLl~Ss~t 144 (262)
T MTH00052 129 SVPLLNTAVLLSSGAT 144 (262)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444444443
No 108
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=21.24 E-value=3.7e+02 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWF 40 (78)
Q Consensus 27 ~vLL~iGl~fta~F 40 (78)
+.++-..+..++.+
T Consensus 128 ~pllnT~iLL~Ss~ 141 (260)
T MTH00039 128 VPLLNTAVLLSSGV 141 (260)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444444
No 109
>PRK11715 inner membrane protein; Provisional
Probab=21.21 E-value=2.4e+02 Score=23.27 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67 (78)
Q Consensus 27 ~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~f 67 (78)
.-+|.|++-|++.| +.|+.+ |..-.+.+=+++++.=.+|
T Consensus 306 YgiLFI~LTF~~fF-lfE~~~-~~~iHpiQYlLVGlAl~lF 344 (436)
T PRK11715 306 YAILFIALTFAAFF-LFELLK-KLRIHPVQYLLVGLALVLF 344 (436)
T ss_pred HHHHHHHHHHHHHH-HHHHhc-CceecHHHHHHHHHHHHHH
Confidence 45778888777755 889887 5556888888887654443
No 110
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=20.91 E-value=3.5e+02 Score=20.12 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPH-LTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 16 PV~pa~yP~-La~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
++||...|. =+++|++.|...+.. .+.+.. ++ .|+...++..++.+|.
T Consensus 121 ~~~~~~~pllnT~iLL~Ss~tv~~a--~~a~~~--~~---~~~~~~~L~~ti~LG~ 169 (259)
T MTH00141 121 PLNPFQVPLLNTAVLLASGVTVTWA--HHSLME--GD---YKSALQGLGLTIILGV 169 (259)
T ss_pred ccCchhhhHHHHHHHHHHHHHHHHH--HHHHHh--CC---HHHHHHHHHHHHHHHH
Confidence 355555663 344555555544332 222221 12 2455556666666655
No 111
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.73 E-value=2.3e+02 Score=24.11 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-c---cchhHHHH---HHHHHHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFFVYEVTST-K---LSRDLVKE---LVIALVAALFSG 69 (78)
Q Consensus 26 a~vLL~iGl~fta~FfiyevT~~-k---~~r~l~KE---l~ia~vAS~flG 69 (78)
.+..+.+|.+...-|.+||.-.. | ..+.+.|+ +...++.+...|
T Consensus 273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G 323 (599)
T PF06609_consen 273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISG 323 (599)
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHH
Confidence 45678999999999999997532 2 23556665 444444444433
No 112
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=20.70 E-value=54 Score=18.30 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q psy4583 47 STKLSRDLVKELVIALVAALFSG 69 (78)
Q Consensus 47 ~~k~~r~l~KEl~ia~vAS~flG 69 (78)
+.|+++-+.--+..++++|.-.|
T Consensus 5 KKKKnkIl~~al~a~l~~S~s~g 27 (33)
T TIGR02184 5 KKKKNKIATLVIVTSLLTSLTIS 27 (33)
T ss_pred hhhhhheehHHHHHHHHHhheee
Confidence 45788888877888887776443
No 113
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=20.68 E-value=37 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.676 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHHH----HHHHHHHHHHHhC
Q psy4583 50 LSRDLVKELVIALVAA----LFSGFGTLFLLLW 78 (78)
Q Consensus 50 ~~r~l~KEl~ia~vAS----~flGfG~lFllLw 78 (78)
.+++=.||.+.-.+.| .+=|+|++|-..|
T Consensus 16 ~s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W 48 (68)
T PRK02955 16 NSKEELEGTIVDAIQSGEEKMLPGLGVLFEVIW 48 (68)
T ss_pred CCHHHHHHHHHHHHhccchhcCCcchhHHHHHH
Confidence 5667789999988884 6889999998888
No 114
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=20.63 E-value=48 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=16.1
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 41 FVYEVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 41 fiyevT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
++|...+ |..+...-.....+|+++-+.
T Consensus 19 Yv~~~ar--k~~k~~~~~~~~tia~~~~~l 46 (47)
T PF15055_consen 19 YVYAQAR--KRMKPGGPYGMGTIAQMAFGL 46 (47)
T ss_pred HHHHHHh--hcccCCCCCchHHHHHHHhhc
Confidence 4666664 444555555666666666554
No 115
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=20.17 E-value=3.5e+02 Score=20.37 Aligned_cols=52 Identities=37% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 16 PVNPAIFPHL-TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 16 PV~pa~yP~L-a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
|+||-..|.+ +++|++.|...+.. .+.+..+| .|+...++..++.+|. .|+.
T Consensus 123 ~~~~~~~pllnT~iLL~Ss~~v~~a--~~a~~~~~-----~~~~~~~L~~Ti~LG~--~Fl~ 175 (261)
T MTH00024 123 PLNPFSVPLLNTAVLLSSGATVTWA--HHAIISGK-----RKEAILGLFLTVFLGV--LFTG 175 (261)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHH--HHHHHhCC-----HHHHHHHHHHHHHHHH--HHHH
Confidence 3455455544 55666666654433 22232211 2455556666665554 5553
No 116
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=20.16 E-value=2e+02 Score=22.08 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 54 LVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 54 l~KEl~ia~vAS~flGfG~lFll 76 (78)
...-+++|+++.++.|.|..|++
T Consensus 172 ~~~Ni~iaf~~Gl~~~igiafl~ 194 (226)
T COG3944 172 VMRNIVIAFLAGLAGAIGIAFLL 194 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666653
No 117
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.15 E-value=2.6e+02 Score=22.99 Aligned_cols=39 Identities=36% Similarity=0.578 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67 (78)
Q Consensus 27 ~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~f 67 (78)
.-+|.||+-|++.| +.|+.+ |+.-.+.+=+++|+.=.+|
T Consensus 300 YgiLFI~LTF~~ff-lfE~~~-~~~iHpiQY~LVGlAl~lF 338 (430)
T PF06123_consen 300 YGILFIGLTFLAFF-LFELLS-KLRIHPIQYLLVGLALVLF 338 (430)
T ss_pred HHHHHHHHHHHHHH-HHHHHh-cCcccHHHHHHHHHHHHHH
Confidence 46788888887765 678876 5666888988887654443
No 118
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=20.15 E-value=1.6e+02 Score=18.97 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q psy4583 33 GIFFTAWFFVYEVTSTKLSRDLVKELVIALVAAL 66 (78)
Q Consensus 33 Gl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~ 66 (78)
|..|+++-..--....|.+.++ ++.+.+++||+
T Consensus 45 G~lF~~Yl~~~~~~~~~~rW~~-~~~~~~llas~ 77 (92)
T PF12823_consen 45 GFLFMLYLVAALDLASKYRWSL-KRTLLALLASV 77 (92)
T ss_pred HHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHc
Confidence 5555555443333343555555 67777777775
Done!