Query psy4583
Match_columns 78
No_of_seqs 85 out of 87
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 20:40:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 68.9 8.3 0.00028 20.8 3.7 29 19-47 3-31 (34)
2 1jb0_X Photosystem I subunit P 39.5 29 0.001 18.8 2.7 17 25-41 15-31 (35)
3 3kcu_A Probable formate transp 35.2 32 0.0011 25.2 3.2 29 47-75 24-52 (285)
4 3kly_A Putative formate transp 34.6 30 0.001 25.3 3.0 29 47-75 23-51 (280)
5 4fc4_A Nitrite transporter NIR 21.0 74 0.0025 23.0 3.0 26 50-75 20-45 (261)
6 2zy9_A Mg2+ transporter MGTE; 18.0 71 0.0024 24.2 2.4 23 49-71 374-396 (473)
7 3tds_E Formate/nitrite transpo 15.5 1.4E+02 0.0047 21.7 3.4 25 51-75 24-48 (268)
8 2lx0_A Membrane fusion protein 13.8 1.6E+02 0.0056 15.3 2.5 17 56-72 6-23 (32)
9 2nq2_A Hypothetical ABC transp 13.7 3.9E+02 0.013 19.5 7.1 42 35-76 128-169 (337)
10 3arc_T Photosystem II reaction 13.7 1.7E+02 0.0058 15.4 2.8 15 27-41 9-23 (32)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=68.95 E-value=8.3 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4583 19 PAIFPHLTILLLGIGIFFTAWFFVYEVTS 47 (78)
Q Consensus 19 pa~yP~La~vLL~iGl~fta~FfiyevT~ 47 (78)
|+.=.+++.+++.-++...+||.+|-+-.
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHHHeeee
Confidence 45567899999999999999999996543
No 2
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=39.49 E-value=29 Score=18.80 Aligned_cols=17 Identities=35% Similarity=0.827 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4583 25 LTILLLGIGIFFTAWFF 41 (78)
Q Consensus 25 La~vLL~iGl~fta~Ff 41 (78)
-+++||+|-+...++.|
T Consensus 15 WalllLaINflVAayYF 31 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999988875
No 3
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=35.20 E-value=32 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=20.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 47 STKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 47 ~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
..|.+|+..|=+..|..|-++.|+|.++-
T Consensus 24 ~~K~~~~~~~~~~~~ilAG~~I~~g~~~~ 52 (285)
T 3kcu_A 24 VYKATKHPLKTFYLAITAGVFISIAFVFY 52 (285)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888999999999987764
No 4
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=34.57 E-value=30 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 47 STKLSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 47 ~~k~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
..|.+|+..|=+..|..|-++.|+|.++-
T Consensus 23 ~~K~~~~~~~~~~~~~~AG~~I~~g~~~~ 51 (280)
T 3kly_A 23 EGKAKKAAYKSFLLAISAGIQIGIAFVFY 51 (280)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888887764
No 5
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=20.97 E-value=74 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 50 LSRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 50 ~~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
.+|+..|=+..|..|-++.|+|.++.
T Consensus 20 ~~~~~~~~~~~~~~AG~~I~~g~~~~ 45 (261)
T 4fc4_A 20 SANNPLGFWVSSAMAGAYVGLGIILI 45 (261)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888999999999999998764
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=17.97 E-value=71 Score=24.24 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=17.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy4583 49 KLSRDLVKELVIALVAALFSGFG 71 (78)
Q Consensus 49 k~~r~l~KEl~ia~vAS~flGfG 71 (78)
...|.+.||+.+|++-.+.+|.-
T Consensus 374 ~~~~~~~ke~~~~~~~g~~~~~~ 396 (473)
T 2zy9_A 374 DWRRVFLKEMGVGLLLGLTLSFL 396 (473)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577999999999877776653
No 7
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=15.55 E-value=1.4e+02 Score=21.66 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 51 SRDLVKELVIALVAALFSGFGTLFL 75 (78)
Q Consensus 51 ~r~l~KEl~ia~vAS~flGfG~lFl 75 (78)
+|+..|=+..|..|-++.|+|.++.
T Consensus 24 ~~~~~~~~~~~~~AG~~I~~g~~~~ 48 (268)
T 3tds_E 24 NTSKVKYLVSSAFAGLYVGIGILLI 48 (268)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788999999999999998764
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=13.83 E-value=1.6e+02 Score=15.28 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=11.4
Q ss_pred HHHHHHHHHHH-HHHHHH
Q psy4583 56 KELVIALVAAL-FSGFGT 72 (78)
Q Consensus 56 KEl~ia~vAS~-flGfG~ 72 (78)
-|.+.+++|-+ |+.||-
T Consensus 6 weviaglvalltflafgf 23 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 46777777754 677774
No 9
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=13.71 E-value=3.9e+02 Score=19.52 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4583 35 FFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLL 76 (78)
Q Consensus 35 ~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG~lFll 76 (78)
...+.+.+|-..+.|+..+..+-++++.+-|.+++-++.++.
T Consensus 128 al~a~~lv~~l~~~~~~~~~~~liL~Gia~s~~~~a~~~~l~ 169 (337)
T 2nq2_A 128 GFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQ 169 (337)
T ss_dssp HHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677776423334666778888888888887776654
No 10
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=13.69 E-value=1.7e+02 Score=15.36 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFF 41 (78)
Q Consensus 27 ~vLL~iGl~fta~Ff 41 (78)
++.+.+|..|.|-||
T Consensus 9 ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 9 IFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhh
Confidence 445567777777774
Done!