Query psy4583
Match_columns 78
No_of_seqs 85 out of 87
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 20:40:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 50.6 7.7 0.00056 18.9 2.7 19 24-42 8-26 (29)
2 d2yvxa3 f.57.1.1 (A:276-448) M 37.0 12 0.00091 24.0 2.9 27 44-70 71-97 (173)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 35.5 14 0.00099 18.1 2.2 15 27-41 9-23 (30)
4 d1m56c_ f.25.1.1 (C:) Bacteria 17.4 95 0.0069 20.2 4.6 23 15-37 125-148 (265)
5 d1fftc_ f.25.1.1 (C:) Cytochro 14.2 43 0.0032 20.6 2.0 45 26-71 49-93 (185)
6 d1v54j_ f.23.4.1 (J:) Mitochon 13.7 1E+02 0.0075 16.7 3.9 25 24-49 33-57 (58)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 13.5 79 0.0057 15.9 2.6 11 31-41 26-36 (37)
8 d1y5ic1 f.21.3.1 (C:1-225) Res 12.8 84 0.0061 19.8 3.2 15 21-35 11-25 (225)
9 d1eqfa2 a.29.2.1 (A:1498-1625) 12.6 32 0.0023 20.4 0.9 21 5-25 23-43 (128)
10 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 9.5 27 0.0019 20.1 -0.3 23 1-23 12-34 (111)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=50.64 E-value=7.7 Score=18.93 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4583 24 HLTILLLGIGIFFTAWFFV 42 (78)
Q Consensus 24 ~La~vLL~iGl~fta~Ffi 42 (78)
.-|++||+|.+...++.|-
T Consensus 8 ~wa~lllainflvaayyfa 26 (29)
T d1jb0x_ 8 FWAVLLLAINFLVAAYYFA 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998863
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=37.03 E-value=12 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHH
Q psy4583 44 EVTSTKLSRDLVKELVIALVAALFSGF 70 (78)
Q Consensus 44 evT~~k~~r~l~KEl~ia~vAS~flGf 70 (78)
|++.+...|.+.||+.++++=.+.+|+
T Consensus 71 ~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 71 DLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444556678899999999887777765
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.48 E-value=14 Score=18.08 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy4583 27 ILLLGIGIFFTAWFF 41 (78)
Q Consensus 27 ~vLL~iGl~fta~Ff 41 (78)
+.-+.||++|.|.||
T Consensus 9 ifac~i~lfffaiff 23 (30)
T d2axtt1 9 IFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 345679999998885
No 4
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.37 E-value=95 Score=20.19 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=12.1
Q ss_pred CCCCCCchHHH-HHHHHHHHHHHH
Q psy4583 15 SPVNPAIFPHL-TILLLGIGIFFT 37 (78)
Q Consensus 15 sPV~pa~yP~L-a~vLL~iGl~ft 37 (78)
.+++|-..|.+ +++|+..|...+
T Consensus 125 ~~~~~~~l~l~nT~iLl~Ss~~~~ 148 (265)
T d1m56c_ 125 ITFDPWHLPLINTLILLCSGCAAT 148 (265)
T ss_dssp CCCCTTTTHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHccHHHHH
Confidence 34556666655 445555555433
No 5
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=14.24 E-value=43 Score=20.59 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q psy4583 26 TILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFG 71 (78)
Q Consensus 26 a~vLL~iGl~fta~FfiyevT~~k~~r~l~KEl~ia~vAS~flGfG 71 (78)
....+...+..++++++......-| |+-.|.....+.+++.+|.+
T Consensus 49 ~~~~~nT~vLl~SS~~~~~a~~~~~-~~~~~~~~~~L~~t~~lG~~ 93 (185)
T d1fftc_ 49 PFVLVETFLLLFSSITYGMAAIAMY-KNNKSQVISWLALTWLFGAG 93 (185)
T ss_dssp HHHHHHHHHHGGGTTTTTSGGGTTT-TCCGGGGTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666554332111 11123344455555555553
No 6
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.74 E-value=1e+02 Score=16.66 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4583 24 HLTILLLGIGIFFTAWFFVYEVTSTK 49 (78)
Q Consensus 24 ~La~vLL~iGl~fta~FfiyevT~~k 49 (78)
.+++.|..+|.....+ .+|.....|
T Consensus 33 r~Tm~L~~~G~~~s~~-~l~~a~~Pk 57 (58)
T d1v54j_ 33 RVTMTLCLGGTLYSLY-CLGWASFPH 57 (58)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhCCC
Confidence 7899999999977766 577666544
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.49 E-value=79 Score=15.86 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q psy4583 31 GIGIFFTAWFF 41 (78)
Q Consensus 31 ~iGl~fta~Ff 41 (78)
..|..|..|||
T Consensus 26 vl~vLFssYfF 36 (37)
T d2axtl1 26 VLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 45677888886
No 8
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=12.78 E-value=84 Score=19.82 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHH
Q psy4583 21 IFPHLTILLLGIGIF 35 (78)
Q Consensus 21 ~yP~La~vLL~iGl~ 35 (78)
.||.+|+.+..+|..
T Consensus 11 i~pyial~vf~~G~~ 25 (225)
T d1y5ic1 11 IYPYIAGAVFLIGSW 25 (225)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 588999999999964
No 9
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.58 E-value=32 Score=20.37 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=15.1
Q ss_pred ccccccccccCCCCCCchHHH
Q psy4583 5 INYESMQRYVSPVNPAIFPHL 25 (78)
Q Consensus 5 m~~~~m~~y~sPV~pa~yP~L 25 (78)
++...--||..||++..+|..
T Consensus 23 ~~~p~a~pF~~pVd~~~~PdY 43 (128)
T d1eqfa2 23 MAVPDSWPFHHPVNKKFVPDY 43 (128)
T ss_dssp TTSTTCGGGTSCCCTTTSTTH
T ss_pred HcCCCCChhcCCCCcccCcCH
Confidence 333445689999999988853
No 10
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.55 E-value=27 Score=20.07 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=0.0
Q ss_pred CcccccccccccccCCCCCCchH
Q psy4583 1 MQSTINYESMQRYVSPVNPAIFP 23 (78)
Q Consensus 1 ~~~~m~~~~m~~y~sPV~pa~yP 23 (78)
++..++.+.-.+|..||++..+|
T Consensus 12 l~~l~~~~~a~pF~~pvd~~~~p 34 (111)
T d1e6ia_ 12 LTELQNHAAAWPFLQPVNKEEVP 34 (111)
T ss_dssp HHHHHHSTTCGGGSSCCCTTTST
T ss_pred HHHHHhCCCChhhcCCCCchhCc
Done!