RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4583
         (78 letters)



>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite
          reductase, NRFA, NAPC/NIRT family, membrane complex,
          oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
          vulgaris} PDB: 2vr0_C*
          Length = 159

 Score = 28.6 bits (63), Expect = 0.15
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 6/42 (14%)

Query: 10 MQRYVSPVNPAIFPHLTILLLGIGIFFTAWF---FVYEVTST 48
          M    S   PA    L ++L G  +   A     F  + T  
Sbjct: 1  MSEEKSRNGPAR---LKLVLGGATLGVVALATVAFGMKYTDQ 39


>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
           cell inner membrane, cell membrane, ION transport, iron
           transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
          Length = 283

 Score = 26.0 bits (58), Expect = 1.1
 Identities = 7/51 (13%), Positives = 20/51 (39%)

Query: 28  LLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLLLW 78
           L   + I  +A F         +S   + +  + ++  + +   T+ L+ +
Sbjct: 77  LAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSF 127


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,155,279
Number of extensions: 56046
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 9
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)