BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4586
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1
Length = 582
Score = 203 bits (517), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 143/239 (59%), Gaps = 48/239 (20%)
Query: 45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
+ NF ELQ +MQ ++L NPEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 156 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 215
Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
I+HMLNNP ++RQT+E+ARNP+M+QE+MR Q+R LSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 216 ISHMLNNPNIMRQTLELARNPAMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPML 275
Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
NAA +QF NP+ S S + P R
Sbjct: 276 NAAQEQFGGNPFASLVSSPSSAEGTQPSRT------------------------------ 305
Query: 225 PLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNT-----TTGTLPANTPTMTTGQG 278
ENRDPLPNPW P + SSP G+T T T N + GQG
Sbjct: 306 -------------ENRDPLPNPWAPQTPQSSPASGSTGSTTNTVSTSAGNATSTPAGQG 351
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1
Length = 582
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 136/212 (64%), Gaps = 43/212 (20%)
Query: 45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
+ NF ELQ +MQ ++L NPEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 156 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 215
Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 216 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 275
Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
NAA +QF NP+ S S + P R
Sbjct: 276 NAAQEQFGGNPFASLVSSSSSAEGTQPSRT------------------------------ 305
Query: 225 PLWPNAANPQQGQENRDPLPNPWNPGSNPSSP 256
ENRDPLPNPW P ++ SSP
Sbjct: 306 -------------ENRDPLPNPWAPQTSQSSP 324
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2
Length = 589
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 132/205 (64%), Gaps = 43/205 (20%)
Query: 45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
+ NF ELQ +MQ ++L NPEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 165 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 224
Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 225 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 284
Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
+AA +QF NP+ S S + G P R
Sbjct: 285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRT------------------------------ 314
Query: 225 PLWPNAANPQQGQENRDPLPNPWNP 249
ENRDPLPNPW P
Sbjct: 315 -------------ENRDPLPNPWAP 326
>sp|Q5R684|UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1
Length = 589
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 132/205 (64%), Gaps = 43/205 (20%)
Query: 45 SANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE 104
+ NF ELQ +MQ ++L NPEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPE
Sbjct: 165 TTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE 224
Query: 105 INHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPML 164
I+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPML
Sbjct: 225 ISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPML 284
Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQ 224
+AA +QF NP+ S S + G P R
Sbjct: 285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRT------------------------------ 314
Query: 225 PLWPNAANPQQGQENRDPLPNPWNP 249
ENRDPLPNPW P
Sbjct: 315 -------------ENRDPLPNPWAP 326
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2
Length = 601
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 142/213 (66%), Gaps = 45/213 (21%)
Query: 46 ANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEI 105
ANFMELQQ+MQ +++ NPEML I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPEI
Sbjct: 176 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEI 235
Query: 106 NHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 165
+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM +
Sbjct: 236 SHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFS 295
Query: 166 AATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQP 225
AA +QF NP+ S+ +G + P R
Sbjct: 296 AAREQFGNNPF-SSLAGNSDSSSSQPLRT------------------------------- 323
Query: 226 LWPNAANPQQGQENRDPLPNPWNPGSNPSSPRP 258
ENR+PLPNPW+P S P+S P
Sbjct: 324 ------------ENREPLPNPWSP-SPPTSQAP 343
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1
Length = 596
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 141/213 (66%), Gaps = 45/213 (21%)
Query: 46 ANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEI 105
ANFMELQQ+MQ +++ NPEML I++NPLVQ M+++P+ MR++IM+NPQMQ L+ERNPEI
Sbjct: 171 ANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEI 230
Query: 106 NHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 165
+HMLNNPEL+RQTME+ARNP+M+QE+MR QDRALSNLES+PGGY+AL+RMY DIQEPM
Sbjct: 231 SHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFT 290
Query: 166 AATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQP 225
AA +QF NP+ S+ +G + P R
Sbjct: 291 AAREQFGNNPF-SSLAGNSDNSSSQPLRT------------------------------- 318
Query: 226 LWPNAANPQQGQENRDPLPNPWNPGSNPSSPRP 258
ENR+PLPNPW+P S P+S P
Sbjct: 319 ------------ENREPLPNPWSP-SPPTSQAP 338
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2
Length = 638
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 119/151 (78%)
Query: 47 NFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN 106
NF ELQ +MQ ++L +PEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPEI+
Sbjct: 174 NFTELQNQMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEIS 233
Query: 107 HMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNA 166
H+LNNP+++RQT+E+ARNP+M+QE+MR QD ALSNLESIPGGY+AL+RMY DIQEPMLNA
Sbjct: 234 HLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNA 293
Query: 167 ATQQFSRNPYESNSSGGNPGRVKAPFRRSKR 197
A +QF NP+ + S G P R R
Sbjct: 294 AQEQFGGNPFATVGSSSTSGEGTQPSRTENR 324
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2
Length = 624
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 102/115 (88%)
Query: 62 NPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEM 121
+PEM+ I++NP VQ ML++P+ MR LIM+NPQMQ LI+RNPEI+H+LNNP+++RQT+E+
Sbjct: 178 SPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEI 237
Query: 122 ARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPY 176
ARNP+M+QE+MR QD ALSNLESIPGGY+AL+RMY DIQEPMLNAA +QF NP+
Sbjct: 238 ARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPF 292
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1
Length = 658
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 31 YVLG-LGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLI 89
+ LG L GL LG+ S +F + + + + PE++ ++D+P +QG+L++ +R L+
Sbjct: 132 FSLGVLTGLSGLGLTSGSFSDQPGSLMWQHISVPELVAQLVDDPFIQGLLSNTGLVRQLV 191
Query: 90 MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGY 149
+ NP MQ LI++NPEI H+LNNPE++RQTME RNPSM+QE+MR+QDRALSNLESIPGGY
Sbjct: 192 LDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGY 251
Query: 150 SALQRMYRDIQEPMLNAATQQFSRNPY 176
+ L+ MY DI +PMLNA +QF NP+
Sbjct: 252 NVLRTMYTDIMDPMLNAVQEQFGGNPF 278
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens GN=UBQLN3 PE=1 SV=2
Length = 655
Score = 151 bits (381), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 31 YVLGL-GGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLI 89
+ LGL GL LG+ F + + + + PE + ++D+P + G+L++ +R L+
Sbjct: 132 FSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGLLSNTGLVRQLV 191
Query: 90 MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGY 149
+ NP MQ LI+ NPEI H+LNNPE++RQT+E RNP+M+QE++R+QDR LSNLESIPGGY
Sbjct: 192 LDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRVLSNLESIPGGY 251
Query: 150 SALQRMYRDIQEPMLNAATQQFSRNPY 176
+ L MY DI +PMLNA +QF NP+
Sbjct: 252 NVLCTMYTDIMDPMLNAVQEQFGGNPF 278
>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1
Length = 523
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 94/132 (71%), Gaps = 7/132 (5%)
Query: 58 EMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQ 117
+M+ NP M++ + ++ ++ +L++P+ R+++M NP+M++++ NPE+ ML++P LRQ
Sbjct: 106 DMMNNP-MIQEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQ 164
Query: 118 TMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFS----- 172
++EM RNP +++E+MR DRA+ N+E+ P G++ L+RMY DIQEP++NAA QQ +
Sbjct: 165 SLEMMRNPELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQT 224
Query: 173 -RNPYESNSSGG 183
NP ++N+
Sbjct: 225 NSNPIQTNTDAN 236
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 62 NPEMLRTILDNPLVQGML----NDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQ 117
+PE ++ +L+NP+ Q M+ +DP M+ +I NPQ++ +++ NP++ +NNPE L
Sbjct: 339 DPERVQQLLNNPVAQQMMQRLMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLN- 397
Query: 118 TMEMARNPSMLQELMRTQ 135
M NP + +M+ Q
Sbjct: 398 ---MMTNPENMNAMMQLQ 412
>sp|Q8IYU4|UBQLN_HUMAN Ubiquilin-like protein OS=Homo sapiens GN=UBQLNL PE=2 SV=3
Length = 475
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 60 LRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHML-NNPELLRQT 118
+ +PE +L+NP +Q +L++ M I + Q L+++NPE++ +L +N E+L QT
Sbjct: 166 VSHPECKAQMLENPSIQRLLSNMEFMWQFISEHLDTQQLMQQNPEVSRLLLDNSEILLQT 225
Query: 119 MEMARNPSMLQELMRTQD-----------RALSNLESIPGGYSALQRMYRDIQEPMLNAA 167
+E+ARN +M+QE+M+ Q + LE++PGG +AL + Y DI + MLN+
Sbjct: 226 LELARNLAMIQEIMQIQQPSQNLEYPLNPQPYLGLETMPGGNNALGQNYADINDQMLNSM 285
Query: 168 TQQFSRNPYESNSSG 182
F NP+ + +G
Sbjct: 286 QDPFGGNPFTALLAG 300
>sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus GN=Ubqlnl PE=2 SV=1
Length = 612
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 62 NPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEM 121
+PE + +L+ VQ +L++ M L +P MQDLI++NPE++H+L+N E+L QT+E+
Sbjct: 168 SPEQIEQMLETLCVQRLLSNMFFMHQLPPEHPDMQDLIQQNPEVSHLLDNSEILCQTLEL 227
Query: 122 ARNPSMLQELMRTQDRALS-----------NLESIPGGYSALQRMYRDIQEPMLNAA 167
AR+ +++QE+M+ Q A + LE+IP G L + Y + + MLN
Sbjct: 228 ARHLAIIQEIMQIQQPAQNPEHTLNPQPYLGLETIPNGNIVLGQGYDNFNDHMLNGV 284
>sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus GN=Ubqlnl PE=1 SV=2
Length = 610
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 64 EMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMAR 123
E + +L+N VQ +L++ + + + P M++LI++NPE++H+L+N E+L QT+E+ R
Sbjct: 170 EHIAQVLENLCVQSLLSNMDFVHQMPPEQPYMEELIQQNPEVSHLLDNSEILCQTLELVR 229
Query: 124 NPSMLQELMRTQDRA-----------LSNLESIPGGYSALQRMYRDIQEPMLNAA 167
+ +++QE+M+ Q A LE++P G + L + Y + + MLN
Sbjct: 230 HLAIIQEIMQIQQPAQNPEYPPNSQPFLGLETVPNGNNHLGQSYVNNNDHMLNGV 284
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 11/70 (15%)
Query: 64 EMLRTILDNPLVQG----MLNDPNSMRNLIMSNPQMQDL------IERNPEINHMLNNPE 113
E+LR +++NP+ Q ML++P + +I SNPQ+Q + + ++P ML NP+
Sbjct: 150 ELLR-MMENPIFQSQMNEMLSNPQMLDFMIQSNPQLQAMGPQARQMLQSPMFRQMLTNPD 208
Query: 114 LLRQTMEMAR 123
++RQ+M+ AR
Sbjct: 209 MIRQSMQFAR 218
>sp|Q0U3Y6|DDI1_PHANO DNA damage-inducible protein 1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DDI1 PE=3 SV=2
Length = 442
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 80 NDPNSMRNLIMSNPQMQ-DLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRA 138
+DP ++R ++ NPQ+Q +L +R+PE+ ++N+ + R+ +N + E R A
Sbjct: 100 SDPEAVRQQVLRNPQVQAELRQRDPELLAIMNDADRWREAFASRQNSAQNAERERQNQIA 159
Query: 139 LSNLESIPGGYSALQRMYRDI--QEPMLNAATQQFSRNP 175
L N + P A QR DI QE ++ + ++ NP
Sbjct: 160 LLNED--PFNVEA-QRKIEDIIRQERVVENLEKAYNENP 195
>sp|Q95PZ2|MICU1_CAEEL Calcium uptake protein 1 homolog, mitochondrial OS=Caenorhabditis
elegans GN=Y67H2A.4 PE=3 SV=2
Length = 534
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 31 YVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIM 90
Y G G +L S F+E Q+R+Q ++L+ R LDNP G++N+ +S L++
Sbjct: 334 YFFGKDGKGSLS--SEKFIEFQERLQHDILKMEFERRDALDNP--DGLINE-DSFAQLLL 388
Query: 91 SNPQMQDLIERNPEINHMLN 110
+ Q+ + ++ HML
Sbjct: 389 LHAQINEKKQK-----HMLK 403
>sp|B7VKH3|RF1_VIBSL Peptide chain release factor 1 OS=Vibrio splendidus (strain LGP32)
GN=prfA PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
+++ L+ER E+ H+L +P++L Q+ R + S LE + G + + Q
Sbjct: 8 KLETLVERYEEVQHLLGDPDVLGN-----------QDKFRALSKEYSQLEEVTGCFKSYQ 56
Query: 154 RMYRDIQ--EPMLN 165
+ D++ E M N
Sbjct: 57 QAQEDLEAAEEMAN 70
>sp|B2HKS2|IF2_MYCMM Translation initiation factor IF-2 OS=Mycobacterium marinum (strain
ATCC BAA-535 / M) GN=infB PE=3 SV=1
Length = 947
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 160 QEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNL 219
Q P + P+ + G PG V P R+ PR P SS + PV +
Sbjct: 156 QRPAPTPGKPAAPQAPHPGMAPGARPGPVPKPGVRT-----PRVGNNPFSS-AQPVDRPI 209
Query: 220 LNRKQPLWPNAANPQQGQENRDPLPNPWNPGSNPSSPRPGNTTTGTLPANT 270
+P P P+ G P P +PG+ P PRPG + G P T
Sbjct: 210 ---PRPQAPRPGAPRPGA----PRPGGASPGNMP--PRPGGASGGPRPPRT 251
>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein
OS=Dictyostelium discoideum GN=sgt PE=1 SV=1
Length = 334
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 35/49 (71%), Gaps = 8/49 (16%)
Query: 68 TILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLR 116
++L NP ++G+ N+ +MS+P+M+++++ N ++ +LNNP+LL+
Sbjct: 286 SLLSNPAIRGLANN-------LMSDPKMKEMMD-NGDMASLLNNPDLLK 326
>sp|P39524|ATC3_YEAST Probable phospholipid-transporting ATPase DRS2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DRS2 PE=1 SV=2
Length = 1355
Score = 32.3 bits (72), Expect = 4.2, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 90 MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGY 149
M P+ +I+ + N + P + +Q R +Q + + + A S E GG
Sbjct: 1229 MYEPETYHVIQEMQKYNISDSRPHV-QQFQNAIRKVRQVQRMKKQRGFAFSQAEE--GGQ 1285
Query: 150 SALQRMYRDIQEPMLNAATQQFSRNPYESNSS-GGNPGRVKAPFRRSKRYLGPRQCARPS 208
+ RMY Q+ Q S NP+ N+ G N PF + G + R S
Sbjct: 1286 EKIVRMYDTTQKRGKYGELQDASANPFNDNNGLGSNDFESAEPFIENPFADGNQNSNRFS 1345
Query: 209 SS 210
SS
Sbjct: 1346 SS 1347
>sp|Q10169|DSK2_SCHPO Deubiquitination-protection protein dph1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dph1 PE=4 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 64 EMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN---HMLNNPELLRQTME 120
E L +L NP+VQ +N+ + SNPQM D+I IN H+ N P +RQ M+
Sbjct: 142 EELANMLSNPMVQSSINE-------MFSNPQMLDMI-----INSSPHLRNAPPYVRQMMQ 189
>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1
SV=2
Length = 1735
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 165 NAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLS-TPVLM--NLLN 221
N ++Q + +P + G ++ P S+ + RQ + SS S +P M NLLN
Sbjct: 704 NLSSQSIASSPAQKKKREGTVFQISYPSAFSQ-LIASRQVSPLFSSQSWSPRSMSPNLLN 762
Query: 222 RKQPLWPNAANPQQGQENRDPLPN 245
PL N ANP + DP N
Sbjct: 763 TASPLAFNIANPSSAADCSDPFAN 786
>sp|B4H1X9|QTRD1_DROPE Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog
OS=Drosophila persimilis GN=GL17966 PE=3 SV=1
Length = 417
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 19/117 (16%)
Query: 106 NHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 165
+H+ P+LL T+ + S + DR LS+ PG + L
Sbjct: 51 SHVTETPQLLELTLSTIDHMSEALAQFNSADRGLSDYIGFPGHLNVL------------- 97
Query: 166 AATQQFSRNPYESNSSGGNPGRVKAPF-RRSKRYLGPRQCARPSSSLSTPVLMNLLN 221
R+P E+ +GGN ++ F RR K L P++ +SL + L +
Sbjct: 98 -----LLRDPCETTPAGGNDRDIQPLFTRRGKESLSPKRYMEMVASLRPDIYQGLCD 149
>sp|Q03653|EFR3_YEAST Protein EFR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=EFR3 PE=1 SV=1
Length = 782
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 32/139 (23%)
Query: 6 IAYGSVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEM 65
+A+ S+C++ LD VL G ++ + + NF++L ++ TE + N +M
Sbjct: 123 LAFSSICQN--------------LDDVLCNGDMEFVQLYQ-NFVDLFFKIVTERIHNDDM 167
Query: 66 LRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLN-----NPELLRQTME 120
L++ ++ N+ N + SNPQ+ + ++ + + ++ NP+ ++E
Sbjct: 168 --------LLKCCIDISNT--NSVSSNPQLNHFVSKS--VAYTISKFQERNPKFKTLSLE 215
Query: 121 MARNPSMLQELMRTQDRAL 139
A ++ + L RTQ R +
Sbjct: 216 AALESNLGKRLSRTQTRTI 234
>sp|E9ES90|STS1_METAR Tethering factor for nuclear proteasome STS1 OS=Metarhizium
anisopliae (strain ARSEF 23 / ATCC MYA-3075) GN=STS1
PE=3 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 95 MQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQR 154
++ L ER+P+I ++ + A PS+L L QD + E+IP G S+ +
Sbjct: 96 LERLCERHPDIG---------QEVVVGAPRPSVLSALDVLQDYHVKLKEAIPYGESSPEY 146
Query: 155 MYRDIQEPML 164
Y ++EP++
Sbjct: 147 TYYRVKEPLI 156
>sp|C0QWA1|RF1_BRAHW Peptide chain release factor 1 OS=Brachyspira hyodysenteriae
(strain ATCC 49526 / WA1) GN=prfA PE=3 SV=1
Length = 358
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 69 ILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMA 122
I DN ++Q ++ + + +++ +++ +++ E N M+NNP+ ++ +MA
Sbjct: 26 IKDNRVIQDLMKKKSEIEDIVEEYKKLKVVLKEIEESNEMVNNPDTDKELKDMA 79
>sp|O94667|RTF1_SCHPO RNA polymerase-associated protein C651.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC651.09c PE=1 SV=1
Length = 560
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 74 LVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSML---QE 130
VQ LND M ++S ++ D+I R E++ + +N + + R + + E
Sbjct: 332 FVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAE 391
Query: 131 LMRTQDRALSNLESIPGG 148
L++ D L+ LE + G
Sbjct: 392 LVKEIDDQLNTLEELSMG 409
>sp|Q5HZJ0|RNC_MOUSE Ribonuclease 3 OS=Mus musculus GN=Drosha PE=1 SV=1
Length = 1373
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 50 ELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHML 109
E +Q + +P++ L+ PL L +PN+ R LI ++P +Q L E I +
Sbjct: 1058 EAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIF 1117
Query: 110 NNPELLRQTMEM 121
+ LL + +
Sbjct: 1118 THVRLLARAFTL 1129
>sp|Q6GUF4|FBP1L_XENTR Formin-binding protein 1-like OS=Xenopus tropicalis GN=fnbp1l PE=2
SV=1
Length = 550
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 83 NSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQEL 131
N M+++ NPQM D +P+I +N E LR ME+ +N + L E+
Sbjct: 371 NKMKDVYEKNPQMGDPSSLHPKIAETTSNIERLR--MEIHKNEAWLSEV 417
>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2
Length = 1374
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 50 ELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHML 109
E +Q + +P++ L+ PL L +PN+ R LI ++P +Q L E I +
Sbjct: 1059 EAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIF 1118
Query: 110 NNPELLRQTMEM 121
+ LL + +
Sbjct: 1119 THVRLLARAFTL 1130
>sp|P0A5P4|ERP_MYCTU Exported repetitive protein OS=Mycobacterium tuberculosis GN=erp
PE=1 SV=1
Length = 284
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 185 PGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLW-PNAANPQQGQENRDPL 243
PG + AP L P + +L+ P L + L P +P G N P+
Sbjct: 124 PGSLAAP----GTTLAPTPGVGANPALTNPALTSPTGATPGLTSPTGLDPALGGANEIPI 179
Query: 244 PNP--WNPGSNPSSPRPGNTTTGTLPANTPTMTTGQGG 279
P +PG++ + P G+ T GT+P++ T +TG GG
Sbjct: 180 TTPVGLDPGADGTYPILGDPTLGTIPSSPATTSTGGGG 217
>sp|P0A5P5|ERP_MYCBO Exported repetitive protein OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=erp PE=3 SV=1
Length = 284
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 185 PGRVKAPFRRSKRYLGPRQCARPSSSLSTPVLMNLLNRKQPLW-PNAANPQQGQENRDPL 243
PG + AP L P + +L+ P L + L P +P G N P+
Sbjct: 124 PGSLAAP----GTTLAPTPGVGANPALTNPALTSPTGATPGLTSPTGLDPALGGANEIPI 179
Query: 244 PNP--WNPGSNPSSPRPGNTTTGTLPANTPTMTTGQGG 279
P +PG++ + P G+ T GT+P++ T +TG GG
Sbjct: 180 TTPVGLDPGADGTYPILGDPTLGTIPSSPATTSTGGGG 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,660,570
Number of Sequences: 539616
Number of extensions: 5211389
Number of successful extensions: 17468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 17120
Number of HSP's gapped (non-prelim): 375
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)