Query psy4586
Match_columns 294
No_of_seqs 221 out of 555
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 20:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_X RAD23, UV excision repa 97.0 0.00049 1.7E-08 60.2 3.8 47 66-112 25-81 (171)
2 2lnm_A Protein TIC 40, chlorop 96.8 0.0013 4.3E-08 48.1 4.6 26 63-88 2-27 (62)
3 2llw_A Heat shock protein STI1 96.7 0.0012 4.1E-08 50.1 4.0 25 63-87 10-34 (71)
4 2lnm_A Protein TIC 40, chlorop 96.4 0.0016 5.4E-08 47.6 2.6 39 97-135 6-44 (62)
5 2f4m_B UV excision repair prot 96.0 0.005 1.7E-07 45.7 3.5 42 69-110 7-57 (61)
6 1pve_A HHR23B, UV excision rep 95.9 0.0029 1E-07 48.4 1.8 24 80-103 24-51 (72)
7 2llv_A Heat shock protein STI1 95.7 0.002 6.8E-08 48.4 0.5 49 61-117 11-61 (71)
8 2llw_A Heat shock protein STI1 95.3 0.019 6.4E-07 43.5 4.5 30 103-132 20-49 (71)
9 2llv_A Heat shock protein STI1 93.9 0.0068 2.3E-07 45.4 -1.0 42 92-133 12-54 (71)
10 2f4m_B UV excision repair prot 91.9 0.5 1.7E-05 34.9 6.6 47 76-137 5-51 (61)
11 1oqy_A HHR23A, UV excision rep 91.6 0.058 2E-06 51.6 1.6 30 111-140 256-287 (368)
12 1pve_A HHR23B, UV excision rep 89.5 0.48 1.6E-05 36.1 4.7 37 94-137 17-53 (72)
13 2qsf_X RAD23, UV excision repa 87.6 0.53 1.8E-05 41.1 4.4 39 75-113 25-72 (171)
14 1oqy_A HHR23A, UV excision rep 73.8 3.6 0.00012 39.3 5.0 14 110-126 270-283 (368)
15 1cz6_A Protein (androctonin); 28.4 12 0.00042 23.2 0.0 10 10-19 2-11 (26)
16 2l9b_A MRNA 3'-END-processing 20.3 67 0.0023 26.1 2.9 18 79-96 66-83 (109)
No 1
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=96.96 E-value=0.00049 Score=60.17 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHhhh-CCHHHHhh----hcChHHHHHHHh----hChHHHHHHhhChh-hhhccCCh
Q psy4586 66 LRTIL-DNPLVQGM----LNDPNSMRNLIM----SNPQMQDLIERNPE-INHMLNNP 112 (294)
Q Consensus 66 M~qmM-nNP~VQsM----LSNP~lmrqMI~----sNPqmqqmmeqNPE-lrqMLnNP 112 (294)
+..++ ++|.|++| .+||+++..||+ +||+|.++|.+||+ |.+||++|
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep 81 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEA 81 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCc
Confidence 44566 67777664 499999988886 99999999999986 44444443
No 2
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=96.84 E-value=0.0013 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred HHHHHhhhCCHHHHhhhcChHHHHHH
Q psy4586 63 PEMLRTILDNPLVQGMLNDPNSMRNL 88 (294)
Q Consensus 63 Pe~M~qmMnNP~VQsMLSNP~lmrqM 88 (294)
+|.++.+++||.++.+|+||++++-+
T Consensus 2 ~e~~~kl~~dPe~~~~m~dP~~~~~l 27 (62)
T 2lnm_A 2 EEVISKIMENPDVAMAFQNPRVQAAL 27 (62)
T ss_dssp HHHHHHHTTSHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcChHHHHHcCCHHHHHHH
Confidence 45667788888888888888886543
No 3
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0012 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHhhhCCHHHHhhhcChHHHHH
Q psy4586 63 PEMLRTILDNPLVQGMLNDPNSMRN 87 (294)
Q Consensus 63 Pe~M~qmMnNP~VQsMLSNP~lmrq 87 (294)
+|.+..+|+||.|+.+|+||+++.-
T Consensus 10 ee~~~~~m~dPEi~~im~DP~~~~~ 34 (71)
T 2llw_A 10 EETYQRAMKDPEVAAIMQDPVMQSI 34 (71)
T ss_dssp HHHHHHHHHSHHHHHHHTCTHHHHH
T ss_pred HHHHHHHhcCHHHHHHhCCHHHHHH
Confidence 4566778888888888888866543
No 4
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=96.41 E-value=0.0016 Score=47.61 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=25.5
Q ss_pred HHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHh
Q psy4586 97 DLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQ 135 (294)
Q Consensus 97 qmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~Q 135 (294)
+-+.++|++..+|+||+++..+.++.+||+.+++.+...
T Consensus 6 ~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP 44 (62)
T 2lnm_A 6 SKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDK 44 (62)
T ss_dssp HHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCH
T ss_pred HHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhCh
Confidence 334456677777777777777777777777776665433
No 5
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=95.99 E-value=0.005 Score=45.68 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=23.3
Q ss_pred hhCCHHHHhh----hcChHHHHHHH----hhChHHHHHHhhChh-hhhccC
Q psy4586 69 ILDNPLVQGM----LNDPNSMRNLI----MSNPQMQDLIERNPE-INHMLN 110 (294)
Q Consensus 69 mMnNP~VQsM----LSNP~lmrqMI----~sNPqmqqmmeqNPE-lrqMLn 110 (294)
+.++|.|+.| -+||+++..++ .+||++.++|.+||+ |-+|++
T Consensus 7 Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~ 57 (61)
T 2f4m_B 7 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 57 (61)
T ss_dssp GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHT
T ss_pred HHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHc
Confidence 3445555443 26666665554 556666666666654 455544
No 6
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=95.86 E-value=0.0029 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=11.9
Q ss_pred cChHHHHHHH----hhChHHHHHHhhCh
Q psy4586 80 NDPNSMRNLI----MSNPQMQDLIERNP 103 (294)
Q Consensus 80 SNP~lmrqMI----~sNPqmqqmmeqNP 103 (294)
+||+++..+| .+||++.++|.+||
T Consensus 24 qNP~lL~~lLqqL~~~NPqL~q~I~~n~ 51 (72)
T 1pve_A 24 QNPSLLPALLQQIGRENPQLLQQISQHQ 51 (72)
T ss_dssp TCGGGHHHHHHHHHTTCHHHHHHHHTTH
T ss_pred HCHHHHHHHHHHHHhHCHHHHHHHHHCH
Confidence 5555554443 34555555554444
No 7
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.002 Score=48.36 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=32.0
Q ss_pred CCHHHHHhhhCCHHHHhhhcChHHHHHHHhhChHHHHHHhhChh-hhh-ccCChHHHHH
Q psy4586 61 RNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE-INH-MLNNPELLRQ 117 (294)
Q Consensus 61 ~nPe~M~qmMnNP~VQsMLSNP~lmrqMI~sNPqmqqmmeqNPE-lrq-MLnNPE~LRQ 117 (294)
++|+.+..+.+||.++.+|+||++++-+- -+.+||. +.. .++||.++.-
T Consensus 11 ~~p~~~~kl~~dP~t~~~~~DP~~~~~lq--------~i~~NP~~i~~~~~~dPrv~~~ 61 (71)
T 2llv_A 11 ADPNLIENLKKNPKTSEMMKDPQLVAKLI--------GYKQNPQAIGQDLFTDPRLMTI 61 (71)
T ss_dssp HSSSCHHHHHHSSTTHHHHHSCTHHHHHH--------HHHHSCTTHHHHTTTCHHHHHH
T ss_pred cChHHHHHHHcChHHHHHhcCHHHHHHHH--------HHHHCHHHHHHHHhhCcHHHHH
Confidence 46777778888888888888888865441 1334443 445 6777775543
No 8
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.019 Score=43.47 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=12.9
Q ss_pred hhhhhccCChHHHHHHHHHhhCHHHHHHHH
Q psy4586 103 PEINHMLNNPELLRQTMEMARNPSMLQELM 132 (294)
Q Consensus 103 PElrqMLnNPE~LRQmmemmrNPa~mQEMM 132 (294)
||+..+|+||+++.-+.++++||+.+++.+
T Consensus 20 PEi~~im~DP~~~~~lq~~~~NP~~~~k~~ 49 (71)
T 2llw_A 20 PEVAAIMQDPVMQSILQQAQQNPAALQEHM 49 (71)
T ss_dssp HHHHHHHTCTHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHCHHHHHHHH
Confidence 444444444444443333444444444444
No 9
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.0068 Score=45.42 Aligned_cols=42 Identities=21% Similarity=0.622 Sum_probs=31.8
Q ss_pred ChHHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHH-HHH
Q psy4586 92 NPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQE-LMR 133 (294)
Q Consensus 92 NPqmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQE-MMR 133 (294)
.|.+.+.+..||+++.+|+|||++..+-++.+||+.+++ .++
T Consensus 12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~ 54 (71)
T 2llv_A 12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFT 54 (71)
T ss_dssp SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTT
T ss_pred ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhh
Confidence 455545566778888888888888888888888888877 654
No 10
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=91.85 E-value=0.5 Score=34.86 Aligned_cols=47 Identities=34% Similarity=0.602 Sum_probs=23.9
Q ss_pred HhhhcChHHHHHHHhhChHHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHH
Q psy4586 76 QGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDR 137 (294)
Q Consensus 76 QsMLSNP~lmrqMI~sNPqmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDr 137 (294)
..|.+||+| -+||+++++||++. +.+|.++ -.+||+..+.+.++++.
T Consensus 5 ~~Lr~~Pqf--------~~lR~~vq~NP~~L-----~~lLqql--~~~nP~l~~~I~~n~e~ 51 (61)
T 2f4m_B 5 EFLRNQPQF--------QQMRQIIQQNPSLL-----PALLQQI--GRENPQLLQQISQHQEH 51 (61)
T ss_dssp GGGTTCHHH--------HHHHHHHHHCGGGH-----HHHHHHH--HHHCHHHHHHHHHSHHH
T ss_pred HHHHcChHH--------HHHHHHHHHCHHHH-----HHHHHHH--HhHCHHHHHHHHHCHHH
Confidence 345566654 22455555555554 3334432 24566666666665553
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.58 E-value=0.058 Score=51.59 Aligned_cols=30 Identities=33% Similarity=0.633 Sum_probs=18.7
Q ss_pred ChHHHHHHHHH--hhCHHHHHHHHHHhHHHHH
Q psy4586 111 NPELLRQTMEM--ARNPSMLQELMRTQDRALS 140 (294)
Q Consensus 111 NPE~LRQmmem--mrNPa~mQEMMR~QDrALs 140 (294)
||++|..+++. ..||+++|.+.++++.-|.
T Consensus 256 nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~ 287 (368)
T 1oqy_A 256 NPALLPALLQQLGQENPQLLQQISRHQEQFIQ 287 (368)
T ss_dssp CTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHH
Confidence 55555555553 3577777777777775443
No 12
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=89.47 E-value=0.48 Score=36.13 Aligned_cols=37 Identities=38% Similarity=0.700 Sum_probs=18.8
Q ss_pred HHHHHHhhChhhhhccCChHHHHHHHHHhhCHHHHHHHHHHhHH
Q psy4586 94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDR 137 (294)
Q Consensus 94 qmqqmmeqNPElrqMLnNPE~LRQmmemmrNPa~mQEMMR~QDr 137 (294)
+||+++++||++. +.+|.++ -.+||+.++.+.++++.
T Consensus 17 qlR~~vqqNP~lL-----~~lLqqL--~~~NPqL~q~I~~n~e~ 53 (72)
T 1pve_A 17 QMRQIIQQNPSLL-----PALLQQI--GRENPQLLQQISQHQEH 53 (72)
T ss_dssp THHHHHTTCGGGH-----HHHHHHH--HTTCHHHHHHHHTTHHH
T ss_pred HHHHHHHHCHHHH-----HHHHHHH--HhHCHHHHHHHHHCHHH
Confidence 3455555555544 3333332 24566666666555553
No 13
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=87.60 E-value=0.53 Score=41.05 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=25.1
Q ss_pred HHhhh-cChHH--HHHHHhhChHH-----HHHHhhChhhhhcc-CChH
Q psy4586 75 VQGML-NDPNS--MRNLIMSNPQM-----QDLIERNPEINHML-NNPE 113 (294)
Q Consensus 75 VQsML-SNP~l--mrqMI~sNPqm-----qqmmeqNPElrqML-nNPE 113 (294)
+..|+ +||+| ||++|++||++ +++-++||++.+++ +|||
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe 72 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 72 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH
Confidence 67788 99986 57778888874 33333788877665 3676
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=73.85 E-value=3.6 Score=39.28 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=7.4
Q ss_pred CChHHHHHHHHHhhCHH
Q psy4586 110 NNPELLRQTMEMARNPS 126 (294)
Q Consensus 110 nNPE~LRQmmemmrNPa 126 (294)
+||+++++ +..||+
T Consensus 270 ~nP~l~~~---I~~n~~ 283 (368)
T 1oqy_A 270 ENPQLLQQ---ISRHQE 283 (368)
T ss_dssp TCHHHHHH---HHHHHH
T ss_pred hCHHHHHH---HHHCHH
Confidence 36666654 234554
No 15
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=28.44 E-value=12 Score=23.17 Aligned_cols=10 Identities=60% Similarity=1.066 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy4586 10 SVCRDVKIHN 19 (294)
Q Consensus 10 ~~~~~~~~~~ 19 (294)
||||.+||-.
T Consensus 2 svcrqikicr 11 (26)
T 1cz6_A 2 SVCRQIKICR 11 (26)
T ss_dssp CCCCEEEECC
T ss_pred cHhhhhHHHH
Confidence 7899998853
No 16
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.32 E-value=67 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=12.5
Q ss_pred hcChHHHHHHHhhChHHH
Q psy4586 79 LNDPNSMRNLIMSNPQMQ 96 (294)
Q Consensus 79 LSNP~lmrqMI~sNPqmq 96 (294)
.+||+-++.|+..+||+.
T Consensus 66 ~~nP~~a~~LL~q~PQLA 83 (109)
T 2l9b_A 66 RAHPEDAASLLELCPQLS 83 (109)
T ss_dssp HHCHHHHHHHHHHCHHHH
T ss_pred HhCHHHHHHHHHHCchHH
Confidence 377777777777777764
Done!