RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4586
(294 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 9e-05
Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 56/216 (25%)
Query: 63 PEMLRTILDNPLVQGMLNDPNS---MRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTM 119
+M ++IL + ++ ++ L + E E++++ +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLF-------WTLLSKQE--------EMVQKFV 83
Query: 120 E--MARNPSMLQELMRTQDRALSNLESIPGGY-SALQRMYRDIQ----------EPM--L 164
E + N L ++T+ R S + + Y R+Y D Q +P L
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 165 NAATQQFSRNPYES-NSSGG-----------NPGRVKAPFRRSKRYLGPRQCARPSSSLS 212
A + + G +V+ +L + C P + L
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 213 TPVLMNLLNRKQPLWPNAANPQQGQENRDPLPNPWN 248
+L LL + P N ++ + +
Sbjct: 201 --MLQKLLYQIDP------NWTSRSDHSSNIKLRIH 228
Score = 37.5 bits (86), Expect = 0.005
Identities = 40/286 (13%), Positives = 75/286 (26%), Gaps = 101/286 (35%)
Query: 5 VIAYG-----------SVCRDVKIHNLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQ 53
V+ G VC K+ + F I+ + L + + N
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIF--W---------LNLKNCN----SP 195
Query: 54 RMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHML---- 109
EML+ L +D + N + +++ L++ P N +L
Sbjct: 196 ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 110 -NNPELLR------QTMEMARNPSMLQELMRTQDRALSNLESIPGGYS-----ALQRMYR 157
N + + + R + L +S L+ + +L Y
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYL 311
Query: 158 DIQEPMLNAATQQFSRNPYESNSSGGNP---GRVKAPFR----RSKRY------------ 198
D + L P E NP + R +
Sbjct: 312 DCRPQDL----------PRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 199 ------LGP-------RQCA--RPSSSLSTPVLMNLLNRKQPLWPN 229
L P + + PS+ + T +L +W +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-------SLIWFD 398
Score = 34.4 bits (78), Expect = 0.042
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 51/151 (33%)
Query: 3 YDVIAYGSVCRDVKIH-------NLLVFFKSIYLDYVLGLGGLDALGMGSANFMELQQRM 55
Y I + H + F+ ++LD+ F+E + R
Sbjct: 474 YSHIGH---------HLKNIEHPERMTLFRMVFLDF---------------RFLEQKIRH 509
Query: 56 QTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSN-PQ----MQDLIE--RNPEINHM 108
+ +IL+ L + I N P+ + +++ E ++
Sbjct: 510 DSTAWNASG---SILN------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE-ENL 559
Query: 109 LNNPE--LLRQTMEMARNPSMLQELMRTQDR 137
+ + LLR + MA + ++ +E + R
Sbjct: 560 ICSKYTDLLRIAL-MAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 44/148 (29%)
Query: 42 GMG------SANFMELQQRMQTEMLRNP--EMLRTILDNPLVQGMLNDP--------NSM 85
GMG S ++ R +L +++NP+ + N
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 86 RNLIMSNPQMQDLIER-NPEIN-----HMLNNP-ELLRQT---------MEMARNPSMLQ 129
+ + + E+ EIN + + LL T ME A +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA----AFE 1745
Query: 130 ELMRTQDRALSNLESIPGG-----YSAL 152
+L + + L ++ G Y+AL
Sbjct: 1746 DL---KSKGLIPADATFAGHSLGEYAAL 1770
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 33.0 bits (74), Expect = 0.11
Identities = 18/149 (12%), Positives = 36/149 (24%), Gaps = 11/149 (7%)
Query: 43 MGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERN 102
M E NP L + G + + Q
Sbjct: 176 MSMGYERERVVAALRASYNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAAGE 234
Query: 103 PEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEP 162
+ + + P+ + +NP++L L L+ + L + QE
Sbjct: 235 NPLEFLRDQPQFQNMRQVIQQNPALLPAL----------LQQLGQENPQLLQQISRHQEQ 284
Query: 163 MLNAATQQFSRNPYESNSSGGNPGRVKAP 191
+ + S+ G +
Sbjct: 285 FIQMLNEPPGELADISDVEGEVGAIGEEA 313
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 32.5 bits (75), Expect = 0.15
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 85 MRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLES 144
M+ I++ +++ L ER+ E+ +L + + + + L R + L
Sbjct: 1 MKPSIVA--KLEALHERHEEVQALLGDAQT-------IADQERFRALSREY----AQLSD 47
Query: 145 IPGGYSALQRMYRDIQE 161
+ ++ Q++ DI+
Sbjct: 48 VSRCFTDWQQVQEDIET 64
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 32.1 bits (74), Expect = 0.17
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
++ L E E+ +L++PE+ ++ Q L R + + + G +
Sbjct: 4 KLDRLEEEYRELEALLSDPEV-------LKDKGRYQSLSRRY----AEMGEVIGLIREYR 52
Query: 154 RMYRDIQE 161
++ D+++
Sbjct: 53 KVLEDLEQ 60
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 32.2 bits (74), Expect = 0.18
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
Q+Q + +R E+ +L++P++ + EL R + +N Y +
Sbjct: 18 QLQAVEDRYEELGELLSDPDV-------VSDTKRFMELSREE----ANSRETVAVYREYK 66
Query: 154 RMYRDIQE 161
++ ++I +
Sbjct: 67 QVVQNIAD 74
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 29.4 bits (66), Expect = 0.25
Identities = 11/59 (18%), Positives = 36/59 (61%)
Query: 89 IMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPG 147
+ ++P + + +++NP+ + M+ +P+L+ + + +NP + + + T R ++ + ++ G
Sbjct: 9 LFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG 67
Score = 27.9 bits (62), Expect = 0.90
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 59 MLRNPEMLRTILDNPLVQGMLNDPNSMRNL--IMSNPQM 95
+ +P ++ + NP M+ DP + L NPQ
Sbjct: 9 LFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQA 47
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 31.2 bits (71), Expect = 0.37
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 22/69 (31%)
Query: 80 NDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRAL 139
+DPN NL +P L+ + ++ L ++ DR L
Sbjct: 491 HDPNEFTNLA-DDPAYAALVR------------DYAQK---------ALSWRLKHADRTL 528
Query: 140 SNLESIPGG 148
++ S P G
Sbjct: 529 THYRSGPEG 537
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 28.2 bits (63), Expect = 0.57
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 90 MSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMR 133
+ + ++PE+ ++ +P + + +NP+ LQE M+
Sbjct: 7 ETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMK 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 30.3 bits (68), Expect = 0.89
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 16/135 (11%)
Query: 59 MLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSN--PQMQDLIERNPEINHML--NNPEL 114
+P+++ V +LND + +++ + L ++NPE
Sbjct: 176 YRTSPDLVPMGDWTSRVVHLLNDQHLG---VVTAATSLITTLAQKNPEEFKTSVSLAVSR 232
Query: 115 LRQTMEMARNPSMLQELMRTQD--------RALSNLESIPGGYSALQRMYRDIQEPMLNA 166
L + + A R L P + R+ ++ + A
Sbjct: 233 LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP-PEDPAVRGRLTECLETILNKA 291
Query: 167 ATQQFSRNPYESNSS 181
S+ SN+
Sbjct: 292 QEPPKSKKVQHSNAK 306
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 28.4 bits (63), Expect = 2.7
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 77 GMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQT---------MEMARNPSM 127
G+L S +DL +R ++ N+P+++ Q +E A+ S
Sbjct: 271 GVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQ-SP 329
Query: 128 LQELMRTQDRAL 139
+ ++ AL
Sbjct: 330 VYKMAMEWKLAL 341
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical
domain, RNA binding protein; NMR {Saccharomyces
cerevisiae} SCOP: a.144.1.1
Length = 92
Score = 26.7 bits (59), Expect = 3.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 102 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQD 136
E+ +L + EL Q + A + + Q+
Sbjct: 54 PQEVFPLLESDELFEQHYKEASA--AYESFKKEQE 86
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 27.6 bits (61), Expect = 3.6
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 89 IMSNPQMQDLIERNPEINHMLNNPELL----RQTMEMARNPSMLQELMRTQDRALSNLES 144
+ + + ++P L+ +L + E R P M + + R +DRA+++ S
Sbjct: 68 LPLERDAESFLLKSPIAPCSLDKRVILIFHSEFSSE--RGPRMCRFI-RERDRAVNDYPS 124
Query: 145 IP--------GGYSALQRMYRDIQEP 162
+ GGY + + EP
Sbjct: 125 LYYPEMYILKGGYKEFFPQHPNFCEP 150
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 29 LDYVLGLGGLDALGMGSANFMELQQRMQTEMLRNPEMLRTILDNPLVQGM---LNDPNSM 85
++YV+ + G DA+G+G+ +F + E L + + L N +
Sbjct: 232 IEYVMNIVGEDAIGIGT-DFTQGHGHDFFEWLTHDKGYARRLTNFGKIVNPLGIRTVGEF 290
Query: 86 RNLI 89
NL
Sbjct: 291 PNLT 294
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 2.00A {Thermotoga maritima} SCOP:
a.149.1.1 d.50.1.1
Length = 252
Score = 28.0 bits (63), Expect = 3.8
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 78 MLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQ 117
M +D + M+ + + + E E N ELL +
Sbjct: 1 MGSDKIHHHHHHMNESERKIVEEFQKETGINFKNEELLFR 40
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 26.9 bits (59), Expect = 5.5
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 79 LNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRA 138
L+ + + ++ P + +R + H R P M + + R +DR
Sbjct: 67 LHMEEEVEDFLLKKPIVPTDGKRVIVVFHC---------EFSSERGPRMCRYV-RERDRL 116
Query: 139 LSNLESIP--------GGYSALQRMYRDIQEP 162
+ + GGY + EP
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEP 148
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 27.3 bits (61), Expect = 6.9
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 48 FMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIE 100
F EL ++M R+P+ I + + ++ +M M D+++
Sbjct: 266 FRELIIEF-SKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVD 317
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 27.0 bits (59), Expect = 7.4
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 79 LNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRA 138
L + N + P + ++ I + R P M + +R +DR+
Sbjct: 101 LYSQEELFNFFLKKPIVPLDTQKRIII--------VFHCEFSSERGPRMCR-CLREEDRS 151
Query: 139 LSNLESIP--------GGYSALQRMYRDIQEP 162
L+ ++ GGY Y ++ EP
Sbjct: 152 LNQYPALYYPELYILKGGYRDFFPEYMELCEP 183
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei
structure initiative; 2.40A {Streptococcus pneumoniae}
SCOP: a.281.1.2
Length = 113
Score = 25.9 bits (57), Expect = 8.3
Identities = 5/64 (7%), Positives = 16/64 (25%), Gaps = 9/64 (14%)
Query: 47 NFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN 106
+++ Q+ +Q I N + + + ++
Sbjct: 44 DYLAFQEEIQKLAQTG---------QMPDASFQAKMEGFGKQIQGNSLLSEFFTKQQQLA 94
Query: 107 HMLN 110
L+
Sbjct: 95 IYLS 98
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (56), Expect = 8.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 85 MRNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQEL 131
M+++ PQM D P+I L+N E L+ E+ + + L E
Sbjct: 44 MKDVYEKTPQMGDPASLEPQIAETLSNIERLKL--EVQKYEAWLAEA 88
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 26.9 bits (60), Expect = 8.7
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 3/75 (4%)
Query: 179 NSSGGNPGRVKAPFRRSKRYLGPRQCA---RPSSSLSTPVLMNLLNRKQPLWPNAANPQQ 235
+ G F L + ++ TP + + + Q
Sbjct: 172 AKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQL 231
Query: 236 GQENRDPLPNPWNPG 250
+ + PN + G
Sbjct: 232 VKRPEELGPNKFPGG 246
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide
degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A
{Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A*
3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Length = 472
Score = 27.0 bits (59), Expect = 9.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 240 RDPLPNPWNPGSNPSSPRPGNTTTGTLPANTPTMTT 275
+P W S S P T+ + ++ T+T+
Sbjct: 429 NSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTS 464
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,461,646
Number of extensions: 254156
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 49
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)