RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4586
(294 letters)
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 30.8 bits (69), Expect = 0.16
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 98 LIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYR 157
L ER+ E+ +L + + + + L R + L + ++ Q++
Sbjct: 2 LHERHEEVQALLGDAQT-------IADQERFRALSR----EYAQLSDVSRCFTDWQQVQE 50
Query: 158 DIQE 161
DI+
Sbjct: 51 DIET 54
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 113
Score = 27.4 bits (61), Expect = 1.0
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 47 NFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN 106
N ++Q R+ + +R +L + L N ++ L+ +++
Sbjct: 42 NVRDIQLRLHEKQMRGAAIL---------PDEIEQAQKAMALAQQNEKLARLMALEQQMS 92
Query: 107 HMLN 110
+
Sbjct: 93 ITIA 96
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 27.0 bits (60), Expect = 1.4
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 94 QMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQ 153
+M+ + +R I + NN +LL + M+ + A S+ + + Y +
Sbjct: 16 RMEKISKRVNAIEEVNNNVKLLTE---------MVMSHSQGGAAAGSSEDLMKELYQRCE 66
Query: 154 RMYRDIQE 161
RM +
Sbjct: 67 RMRPTLFR 74
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 1.8
Identities = 10/81 (12%), Positives = 21/81 (25%)
Query: 86 RNLIMSNPQMQDLIERNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESI 145
+ D E + + + R D+ N++
Sbjct: 113 DTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKF 172
Query: 146 PGGYSALQRMYRDIQEPMLNA 166
Y + Y + +EP+ A
Sbjct: 173 INRYWKAEDYYLETEEPIKRA 193
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 26.6 bits (59), Expect = 1.9
Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 9/65 (13%)
Query: 46 ANFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEI 105
+++ Q+ +Q I N + + + ++
Sbjct: 42 TDYLAFQEEIQKLAQTG---------QMPDASFQAKMEGFGKQIQGNSLLSEFFTKQQQL 92
Query: 106 NHMLN 110
L+
Sbjct: 93 AIYLS 97
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 26.2 bits (58), Expect = 2.2
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 47 NFMELQQRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEIN 106
NF ++Q R+Q + + + Q + L+ + ++ L+E ++
Sbjct: 42 NFRDVQLRLQQKQMAG---------EEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMS 92
Query: 107 HMLN 110
++
Sbjct: 93 MLIG 96
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.4 bits (60), Expect = 2.7
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 14/134 (10%)
Query: 59 MLRNPEMLRTILDNPLVQGMLNDPNSM--RNLIMSNPQMQDLIERNPEINHML--NNPEL 114
+P+++ V +LND + + L ++NPE
Sbjct: 168 YRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSL---ITTLAQKNPEEFKTSVSLAVSR 224
Query: 115 LRQTMEMARNPSMLQEL-----MRTQDRALSNLESI--PGGYSALQRMYRDIQEPMLNAA 167
L + + A + L L+ P + R+ ++ + A
Sbjct: 225 LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQ 284
Query: 168 TQQFSRNPYESNSS 181
S+ SN+
Sbjct: 285 EPPKSKKVQHSNAK 298
>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan
(Trypanosoma cruzi) [TaxId: 5693]}
Length = 85
Score = 25.5 bits (56), Expect = 3.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 102 NPEINHMLNNPELLRQTMEMA 122
N EI ++L+ P LL ++ A
Sbjct: 55 NGEILNLLDTPGLLDAKVQEA 75
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 26.2 bits (57), Expect = 3.4
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 89 IMSNPQMQDLIERNPEINHMLNNPELLRQ-TMEMARNPSMLQELMRTQDRALSNLESIP- 146
+ +++D + + P + ++ R P M + +R +DR + +
Sbjct: 67 LHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCR-YVRERDRLGNEYPKLHY 125
Query: 147 -------GGYSALQRMYRDIQEP 162
GGY + EP
Sbjct: 126 PELYVLKGGYKEFFMKCQSYCEP 148
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 154 RMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCAR 206
Y + +L A N Y+S ++ ++ RY P++ A
Sbjct: 250 GSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIAN 302
>d1m06g_ b.121.5.1 (G:) Microvirus capsid proteins {Bacteriophage
alpha3 [TaxId: 10849]}
Length = 187
Score = 26.1 bits (57), Expect = 4.6
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 242 PLPNPWNPGSNPSSPRPGNTTTGTLPANTPTMTTGQGGRFWVITDIYGPTA 292
P N P N S L AN T+ G + PT
Sbjct: 29 PTGNI--PVINGGSITAERAVV-NLYANMNVSTSSDGSFIVAMKVDTSPTD 76
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 25.2 bits (55), Expect = 4.8
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 102 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQ 135
E+ +L + EL Q + A + + + Q
Sbjct: 54 PQEVFPLLESDELFEQHYKEAS--AAYESFKKEQ 85
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 24.3 bits (53), Expect = 5.3
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 102 NPEINHMLNNPELLRQTMEMA 122
++ +L + + LR ++ A
Sbjct: 33 PAQLLLLLASEDSLRARVDEA 53
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B
(Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 23.8 bits (52), Expect = 7.6
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 53 QRMQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPE-INHMLNN 111
Q+M+ + +NP +L +L + + NPQ+ I ++ E MLN
Sbjct: 12 QQMRQIIQQNPSLLPALL---------------QQIGRENPQLLQQISQHQEHFIQMLNE 56
Query: 112 P 112
P
Sbjct: 57 P 57
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.9 bits (56), Expect = 7.8
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 55 MQTEMLRNPEMLRTILDNPLVQGMLNDPNSMRNLIMSNPQMQDLIERNPEINHMLNNPEL 114
+ N +M+ ++ ++ D N M + + + ++ E +P N + NP+
Sbjct: 142 VAKLHDINAQMVEDQGFLDSLRDLIADSNPM-VVANAVAALSEISESHPNSNLLDLNPQN 200
Query: 115 LRQTMEMARNPS 126
+ + + +
Sbjct: 201 INKLLTALNECT 212
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 186
Score = 25.2 bits (55), Expect = 9.1
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 31 YVLGLGGLDALGMGSANFMELQQRMQTEML---RNPEMLRTILDNPLVQGMLNDPNSMRN 87
+ GG + + + SA++M+ + E +P + R I+D +++ L D
Sbjct: 94 WCFHNGGKEEVFISSADWMKRNLYNRIETACPVLDPTLRREIID--ILEIQLRDNIKACR 151
Query: 88 L 88
+
Sbjct: 152 I 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,088,091
Number of extensions: 49178
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 18
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)