BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4592
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 246 bits (627), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G +LSLQVE+ + S K +G L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
SHPNP+KVLI+GGGDGGV REV+KHPSVES EID VI+VSKK+LPGMA+G S +L
Sbjct: 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
T+HVGDGF FM ++Q FDVIITDSSDP+GPAESLF+ SY++LM AL+ G++C Q
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211
Query: 174 LWYSLDCVGNTLQHCASVFP 193
W LD + Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 246 bits (627), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G +LSLQVE+ + S K +G L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
SHPNP+KVLI+GGGDGGV REV+KHPSVES EID VI+VSKK+LPGMA+G S +L
Sbjct: 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
T+HVGDGF FM ++Q FDVIITDSSDP+GPAESLF+ SY++LM AL+ G++C Q
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211
Query: 174 LWYSLDCVGNTLQHCASVFP 193
W LD + Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 138/200 (69%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SLQV++ + S ++ +G L+LDGI+Q TE DEFSY EM+A LP+
Sbjct: 45 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 104
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+HP+PK+VLI+GGGDGG+ REVLKH SVE + EID VI+V+KK+LPGM+ G S P+L
Sbjct: 105 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 164
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
+ GDGF F+ H+ EFDVIITDSSDPVGPAESLF SY+EL+ AL+ GI+ SQ +
Sbjct: 165 DLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224
Query: 174 LWYSLDCVGNTLQHCASVFP 193
+W L + + + +FP
Sbjct: 225 VWLHLPLIAHLVAFNRKIFP 244
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 134/200 (67%), Gaps = 9/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL+VE+ + S+ ++ +G L+LDG+IQ TE DE +Y E I LPLC
Sbjct: 57 GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLC 116
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
S PNPKKVL++GGGDGGV REV +H S+E EID V++VSK++ P +A+G DPR+
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRV 176
Query: 114 TVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
+ +GDG F+ + +D +I DSSDP+GPA+ LF+ +F+ ++RALRPGG+VC+QA
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236
Query: 173 TLWYSLDCVGNTLQHCASVF 192
+LW D + + + +C +F
Sbjct: 237 SLWLHXDIIEDIVSNCREIF 256
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 166 bits (421), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 121/192 (63%), Gaps = 12/192 (6%)
Query: 2 GVSLSLQVEEPFYPS-----------SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFL 50
G + SL+VE+ Y + S + +GT LDG IQ T++DEF Y E++
Sbjct: 29 GQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYDEFVYHEVLGHT 88
Query: 51 PLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD 110
LCSHP P++VLI+GGGDGGV REVL+H +VE LV+ID V E SK++ P ++ L+D
Sbjct: 89 SLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQHFPQISRSLAD 148
Query: 111 PRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
PR TV VGDG F+ + +DV+I D++DP GPA LF ++++ + R L+P GI C+
Sbjct: 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208
Query: 170 QAGTLWYSLDCV 181
Q ++W L+ +
Sbjct: 209 QGESIWLDLELI 220
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Query: 1 MGVSLSLQVEEPFYP--SSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNP 58
M V+ +L E+ + +EFG L LDG++ +E DEF Y EM+A +PL +HPNP
Sbjct: 17 MKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNP 76
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118
+ VL+VGGGDGGV RE+LKHPSV+ A LV+ID +VIE SKK+LP +A L DPR+ V V
Sbjct: 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD 136
Query: 119 DGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 178
DGF +++ + ++DVI+ DS++PVGPA +LF ++ +++AL+ GI +Q W++
Sbjct: 137 DGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTP 196
Query: 179 DCVGNTLQHCASVFP 193
+ + N + +FP
Sbjct: 197 ELITNVQRDVKEIFP 211
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 23 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE 82
FG + LDG++Q TE DEF Y EM+ +PL +H + K VLI+GGGDG + REV +H +VE
Sbjct: 49 FGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE 108
Query: 83 SAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
S +VEID V+ ++YLP G DPR + + DG F+++ Q FDVII+D +DP
Sbjct: 109 SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDP 168
Query: 142 VGPAESLFQASYFELMSRALRPGGIVCSQAG 172
+GP ESLF ++++E R L PGGI +Q G
Sbjct: 169 IGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 22 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSV 81
+ G LDGI TE DEF Y EM+A +P+ HPNPKKVLI+GGGDGG REVLKH SV
Sbjct: 55 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSV 114
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
E A L E+D VIE ++KYL + G DPR + + +G ++ + + EFDVII DS+DP
Sbjct: 115 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDP 174
Query: 142 V-GPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193
G LF +++ AL+ G+ ++ +Y + + + VFP
Sbjct: 175 TAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP 227
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL++++ Y + S + +G L+LDG+IQ TE DEF+Y EM+ +P+
Sbjct: 53 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 112
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
PK VL+VGGGDGG+ RE+ K+ SVE+ + EID VIEVSK Y ++ G D R+
Sbjct: 113 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 172
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V + D +F+ +DVII DSSDP+GPAE+LF +++E + AL+P G +Q +
Sbjct: 173 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232
Query: 174 LWYSLDCVGNTLQHCASVFPRL 195
LW + + N + + +F ++
Sbjct: 233 LWIHVGTIKNMIGYAKKLFKKV 254
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL++++ Y + S + +G L+LDG+IQ TE DEF+Y EM+ +P+
Sbjct: 14 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 73
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
PK VL+VGGGDGG+ RE+ K+ SVE+ + EID VIEVSK Y ++ G D R+
Sbjct: 74 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 133
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V + D +F+ +DVII DSSDP+GPAE+LF +++E + AL+P G +Q +
Sbjct: 134 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 193
Query: 174 LWYSLDCVGNTLQHCASVFPRLH 196
LW + + N + + +F ++
Sbjct: 194 LWIHVGTIKNMIGYAKKLFKKVE 216
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL++++ Y + S + +G L+LDG+IQ TE DEF+Y EM+ +P+
Sbjct: 15 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 74
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
PK VL+VGGGDGG+ RE+ K+ SVE+ + EID VIEVSK Y ++ G D R+
Sbjct: 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 134
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V + D +F+ +DVII DSSDP+GPAE+LF +++E + AL+P G +Q +
Sbjct: 135 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194
Query: 174 LWYSLDCVGNTLQHCASVFPRLH 196
LW + + N + + +F ++
Sbjct: 195 LWIHVGTIKNMIGYAKKLFKKVE 217
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
K FG LILD +Q TE DE+ Y E + + +HP PK+VLIVGGG+G REVLKHP+
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT 100
Query: 81 VESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139
VE A +V+ID ++EV+K+++P G DPR + + D ++ ++ +DV+I D +
Sbjct: 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT 160
Query: 140 DPVG---PAESLFQASYFELMSRALRPGGIVCSQAGTL 174
DPVG PA L+ ++ L+ L PGG++ QAG +
Sbjct: 161 DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQAGMI 198
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
K FG LILD +Q TE DE+ Y E + + +HP PK+VLIVGGG+G REVLKHP+
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT 100
Query: 81 VESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139
VE A +V+ID ++EV+K+++P G DPR + + D ++ ++ +DV+I D +
Sbjct: 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT 160
Query: 140 DPVG---PAESLFQASYFELMSRALRPGGIVCSQAGTL 174
DPVG PA L+ ++ L+ L PGG++ Q G +
Sbjct: 161 DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 18/210 (8%)
Query: 2 GVSLSLQVEEPFYPSSSNRKE--------FGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G ++ ++++ Y S ++ FG L LDG +Q E SY E + +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+HP PK+VL++GGGDGG REVL+H V+ +VEID VI VSK L + GL + L
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKD-LIKIDNGLLEAML 129
Query: 114 T-------VHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
+ +GDGF F+ ++ + FDVII DS+DPVGPA+ LF ++ + AL GI
Sbjct: 130 NGKHEKAKLTIGDGFEFI-KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 167 VCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196
+QAG+++ D + + + VF R++
Sbjct: 189 YVTQAGSVYLFTDELISAYKEMKKVFDRVY 218
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 9/181 (4%)
Query: 23 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE 82
FG L +DG +Q E SY E + + +HPNP++VLI+GGGDGG REVLKH VE
Sbjct: 42 FGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPNPRRVLIIGGGDGGAIREVLKHEEVE 101
Query: 83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-------VHVGDGFRFMSEHQQEFDVII 135
+VEID +VIE+S KY+ G+ G+ + L+ + +GDG +F+ E+ FDVII
Sbjct: 102 EVIMVEIDKKVIEISAKYI-GIDGGILEKMLSDKHEKGKLIIGDGVKFIEENSG-FDVII 159
Query: 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195
DS+DPVGPAE LF +++ RAL GI +QAG+++ D + VF ++
Sbjct: 160 VDSTDPVGPAEMLFSEEFYKNAYRALNDPGIYVTQAGSVYLFTDEFLTAYRKMRKVFDKV 219
Query: 196 H 196
+
Sbjct: 220 Y 220
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
V+ VGGG G + + +L+HP ++ Y++E+D ++E K + D RL V D
Sbjct: 35 VVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLK--------SIGDERLEVINEDA 85
Query: 121 FRF 123
+F
Sbjct: 86 SKF 88
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
V+ VGGG G + + +L+HP ++ Y++E+D ++E K + D RL V D
Sbjct: 34 VVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLK--------SIGDERLEVINEDA 84
Query: 121 FRF 123
+F
Sbjct: 85 SKF 87
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 7 LQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 59
L E+ F + +E+G +I+D +I T FD + S + +P +H N +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQ 123
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 7 LQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 59
L E+ F + +E+G +I+D +I T FD + S + +P +H N +
Sbjct: 74 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQ 126
>pdb|3GJY|A Chain A, Crystal Structure Of A Probable Spermidine Synthase From
Corynebacterium Glutamicum Atcc 13032
Length = 317
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 28 ILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLI--VGGGDGGVAREVLKHPSVESAY 85
I+ G Q EF+ + A + +H + K+ I +GGG AR
Sbjct: 58 IVLGQPQALEFEYXRWIATGARAFIDAHQDASKLRITHLGGGACTXARYFADVYPQSRNT 117
Query: 86 LVEIDNRVIEVSKKY--LPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDP 141
+VE+D + +S+++ +P PR+ + V D R ++E DVII D
Sbjct: 118 VVELDAELARLSREWFDIPRA------PRVKIRVDDA-RXVAESFTPASRDVIIRDVFAG 170
Query: 142 VGPAESLFQASYFELMSRALRPGGIVCSQAG 172
++ +FE R L PGG+ + G
Sbjct: 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS 80
K+FG +L+ + F SE++A + C+ K+VLIV G D +A ++ K+ +
Sbjct: 37 KDFGEIAMLNRQLLFKNFLHIE-SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT 95
Query: 81 VESAYLVEIDNRVIEVSKKYLP 102
V+ D ++++ + P
Sbjct: 96 --HIDFVQADEKILDSFISFFP 115
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 3 VSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKK 60
V+ SLQ +PF +SS R+ Q TE + IA L L +HPNP +
Sbjct: 200 VTHSLQCRDPFGAASSGRRA-----------QVTELARSGLAVGIAGLFLEAHPNPNQ 246
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 48 AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG 107
+ L L P ++L +G G A + + +E D R E + K++ A+G
Sbjct: 45 SLLHLLKXAAPARILEIGTAIGYSAIRXAQALPEATIVSIERDERRYEEAHKHVK--ALG 102
Query: 108 LSDPRLTVHVGDGFRFMSEHQQE--FDVIITDSSDPVGPAESLFQASYFELMSRALRPGG 165
L + R+ + GD + + + FDV+ D+ A+ ++ +F+ S +RPGG
Sbjct: 103 L-ESRIELLFGDALQLGEKLELYPLFDVLFIDA------AKGQYR-RFFDXYSPXVRPGG 154
Query: 166 IVCS 169
++ S
Sbjct: 155 LILS 158
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 38 FDEFSYSEM--IAFLPLCSHPNPKKVLIVGGGDGGVA 72
F E Y E IA L + NPK+V+IVG G G++
Sbjct: 24 FRETDYEEFLEIAKNGLSTTSNPKRVVIVGAGMSGLS 60
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 59 KKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
+ VL VGGG+GG +A L+ P + LVE+ +++ GL+D R+TV
Sbjct: 184 RHVLDVGGGNGGMLAAIALRAPHLRGT-LVELAGPAERARRRF---ADAGLAD-RVTVAE 238
Query: 118 GDGFR 122
GD F+
Sbjct: 239 GDFFK 243
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HP 79
K+FG LIL G + E D +Y+ I + K VLI+GGGDGG+ E++K P
Sbjct: 171 KQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDYTG-KDVLILGGGDGGILCEIVKLKP 228
Query: 80 SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----------HQ 128
+ + +VEID VI+ KKY+ + D GD ++ + E
Sbjct: 229 KMVT--MVEIDQMVIDGCKKYMRKTCGDVLDNL----KGDCYQVLIEDCIPVLKRYAKEG 282
Query: 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT--LQ 186
+EFD +I D + V + S + S +E + L V Q G + +CV T L
Sbjct: 283 REFDYVINDLT-AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALS 341
Query: 187 HCASVFPRLHC 197
RL+C
Sbjct: 342 LYEEQLGRLYC 352
>pdb|2V2F|F Chain F, Crystal Structure Of Pbp1a From Drug-resistant Strain 5204
From Streptococcus Pneumoniae
Length = 390
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133
E+ KH +++ V D + ++KY + G S+ RLT VGDGF ++ +
Sbjct: 304 EIEKH--IKNTGYVAPDEMFVGYTRKYSMAVWTGYSN-RLTPIVGDGFLVAAKVYRSMIT 360
Query: 134 IITDSSDP 141
+++ S+P
Sbjct: 361 YLSEGSNP 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,003,269
Number of Sequences: 62578
Number of extensions: 240102
Number of successful extensions: 740
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 37
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)