Query psy4592
Match_columns 197
No_of_seqs 135 out of 1922
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:52:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 3.9E-33 8.3E-38 223.5 21.5 195 2-196 28-232 (308)
2 PRK00811 spermidine synthase; 100.0 1.1E-32 2.3E-37 219.7 20.5 195 2-196 13-216 (283)
3 PF01564 Spermine_synth: Sperm 100.0 2.7E-32 5.9E-37 213.0 16.0 195 2-196 13-216 (246)
4 COG0421 SpeE Spermidine syntha 100.0 4.1E-31 9E-36 208.5 20.6 195 2-196 13-215 (282)
5 TIGR00417 speE spermidine synt 100.0 7.1E-31 1.5E-35 208.2 20.9 195 2-196 9-211 (270)
6 PLN02823 spermine synthase 100.0 1.5E-30 3.3E-35 210.5 21.2 195 2-196 40-247 (336)
7 PRK00536 speE spermidine synth 100.0 5.6E-30 1.2E-34 200.0 18.9 179 2-196 10-196 (262)
8 PRK01581 speE spermidine synth 100.0 7.4E-29 1.6E-33 200.1 19.3 187 8-196 95-293 (374)
9 PRK03612 spermidine synthase; 99.9 1.6E-25 3.4E-30 191.8 20.0 185 8-192 237-437 (521)
10 KOG1562|consensus 99.9 3.1E-25 6.8E-30 171.8 11.6 196 2-197 58-262 (337)
11 PRK04457 spermidine synthase; 99.9 1.5E-21 3.3E-26 154.0 19.3 163 24-194 27-197 (262)
12 COG4262 Predicted spermidine s 99.9 2.1E-21 4.5E-26 154.5 14.6 182 10-191 235-427 (508)
13 COG2226 UbiE Methylase involve 99.8 1.3E-18 2.8E-23 134.1 14.6 109 56-173 50-158 (238)
14 COG2521 Predicted archaeal met 99.8 1.2E-18 2.6E-23 131.4 12.5 166 26-195 103-273 (287)
15 PF12847 Methyltransf_18: Meth 99.8 5.6E-19 1.2E-23 121.9 7.5 109 58-171 2-111 (112)
16 COG4123 Predicted O-methyltran 99.8 4.4E-17 9.6E-22 125.8 15.3 127 56-190 43-184 (248)
17 PF05175 MTS: Methyltransferas 99.8 1.5E-18 3.4E-23 128.7 6.9 111 57-173 31-142 (170)
18 PF01209 Ubie_methyltran: ubiE 99.7 1E-17 2.2E-22 130.0 8.4 123 56-188 46-169 (233)
19 PRK00121 trmB tRNA (guanine-N( 99.7 1.9E-16 4.2E-21 120.6 14.8 126 57-190 40-171 (202)
20 TIGR00091 tRNA (guanine-N(7)-) 99.7 2.2E-16 4.8E-21 119.6 14.8 126 57-190 16-147 (194)
21 COG4106 Tam Trans-aconitate me 99.7 3E-17 6.4E-22 122.6 8.7 114 44-175 20-133 (257)
22 PF13847 Methyltransf_31: Meth 99.7 1.9E-17 4.1E-22 120.6 7.6 108 57-173 3-112 (152)
23 PRK15001 SAM-dependent 23S rib 99.7 8.3E-17 1.8E-21 132.3 10.5 114 58-174 229-343 (378)
24 PF13659 Methyltransf_26: Meth 99.7 1.2E-16 2.7E-21 111.0 8.9 109 59-171 2-115 (117)
25 PRK09489 rsmC 16S ribosomal RN 99.7 2.1E-16 4.5E-21 129.0 11.5 118 57-182 196-314 (342)
26 COG2813 RsmC 16S RNA G1207 met 99.7 2.4E-16 5.2E-21 124.2 11.4 122 57-185 158-280 (300)
27 PF08241 Methyltransf_11: Meth 99.7 5.1E-17 1.1E-21 108.3 6.5 95 62-169 1-95 (95)
28 PRK14103 trans-aconitate 2-met 99.7 2.2E-16 4.8E-21 124.4 10.9 99 56-171 28-126 (255)
29 PRK11036 putative S-adenosyl-L 99.7 4E-16 8.6E-21 123.0 12.2 107 56-171 43-149 (255)
30 PLN02233 ubiquinone biosynthes 99.7 3.2E-16 6.8E-21 123.9 11.1 110 56-171 72-182 (261)
31 COG2242 CobL Precorrin-6B meth 99.7 1.2E-15 2.5E-20 112.5 13.2 120 55-191 32-151 (187)
32 COG2227 UbiG 2-polyprenyl-3-me 99.7 3.2E-16 6.9E-21 119.4 10.5 106 57-174 59-164 (243)
33 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.4E-16 9.5E-21 122.2 11.6 108 56-171 55-164 (247)
34 PRK15128 23S rRNA m(5)C1962 me 99.7 1.7E-15 3.6E-20 125.8 15.6 127 56-185 219-353 (396)
35 TIGR02752 MenG_heptapren 2-hep 99.7 1.3E-15 2.8E-20 118.2 13.9 107 56-171 44-151 (231)
36 TIGR00138 gidB 16S rRNA methyl 99.7 9.2E-16 2E-20 114.8 12.1 101 57-171 42-142 (181)
37 PRK01683 trans-aconitate 2-met 99.7 6E-16 1.3E-20 122.1 11.7 102 56-172 30-131 (258)
38 TIGR02469 CbiT precorrin-6Y C5 99.7 6.2E-16 1.3E-20 108.3 10.0 105 56-171 18-122 (124)
39 PRK00107 gidB 16S rRNA methylt 99.7 7.1E-16 1.5E-20 115.8 10.6 104 56-173 44-147 (187)
40 PRK14966 unknown domain/N5-glu 99.7 3.6E-15 7.8E-20 123.2 15.2 112 57-173 251-383 (423)
41 COG2230 Cfa Cyclopropane fatty 99.7 9.6E-16 2.1E-20 120.4 11.2 107 56-173 71-178 (283)
42 TIGR03534 RF_mod_PrmC protein- 99.7 4.9E-15 1.1E-19 116.2 15.4 110 56-171 86-217 (251)
43 PLN02244 tocopherol O-methyltr 99.7 7.2E-16 1.6E-20 126.2 10.7 107 56-171 117-223 (340)
44 PRK14121 tRNA (guanine-N(7)-)- 99.7 3.8E-15 8.3E-20 122.3 14.8 114 57-174 122-238 (390)
45 PRK08287 cobalt-precorrin-6Y C 99.7 2.4E-15 5.1E-20 113.3 12.6 118 56-191 30-147 (187)
46 KOG1540|consensus 99.6 3.6E-15 7.8E-20 114.1 12.8 110 56-171 99-214 (296)
47 PRK00377 cbiT cobalt-precorrin 99.6 5.7E-15 1.2E-19 112.2 13.4 122 56-191 39-161 (198)
48 PLN02396 hexaprenyldihydroxybe 99.6 2.1E-15 4.6E-20 122.0 11.3 107 57-173 131-237 (322)
49 PTZ00098 phosphoethanolamine N 99.6 3.3E-15 7.1E-20 118.2 11.9 106 56-171 51-156 (263)
50 TIGR00537 hemK_rel_arch HemK-r 99.6 5.8E-15 1.3E-19 110.4 11.5 106 56-171 18-140 (179)
51 PRK10258 biotin biosynthesis p 99.6 7.9E-15 1.7E-19 115.3 12.6 101 56-172 41-141 (251)
52 COG1092 Predicted SAM-dependen 99.6 1.4E-14 3E-19 119.2 14.4 126 57-185 217-350 (393)
53 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.5E-14 3.3E-19 117.5 14.0 102 57-170 113-214 (340)
54 PRK11207 tellurite resistance 99.6 3.3E-15 7.2E-20 113.4 9.6 103 57-169 30-132 (197)
55 TIGR00740 methyltransferase, p 99.6 1.7E-14 3.7E-19 112.6 13.8 108 56-171 52-161 (239)
56 PF13649 Methyltransf_25: Meth 99.6 6.2E-16 1.3E-20 105.0 4.8 97 61-165 1-101 (101)
57 PRK09328 N5-glutamine S-adenos 99.6 4.3E-14 9.3E-19 112.4 16.1 110 56-171 107-238 (275)
58 TIGR00477 tehB tellurite resis 99.6 5.7E-15 1.2E-19 111.9 10.2 103 57-170 30-132 (195)
59 TIGR03533 L3_gln_methyl protei 99.6 8.4E-15 1.8E-19 117.0 11.5 112 57-173 121-253 (284)
60 TIGR00536 hemK_fam HemK family 99.6 3.7E-14 8.1E-19 113.4 15.2 145 22-173 80-246 (284)
61 TIGR02072 BioC biotin biosynth 99.6 1.3E-14 2.8E-19 112.6 11.7 103 56-171 33-135 (240)
62 PF02353 CMAS: Mycolic acid cy 99.6 5E-15 1.1E-19 117.4 9.3 110 53-173 58-168 (273)
63 PF08242 Methyltransf_12: Meth 99.6 1.1E-16 2.5E-21 108.1 -0.1 98 62-167 1-99 (99)
64 PRK11805 N5-glutamine S-adenos 99.6 2.6E-14 5.6E-19 115.3 13.4 110 59-173 135-265 (307)
65 PRK10909 rsmD 16S rRNA m(2)G96 99.6 6E-14 1.3E-18 106.3 14.3 106 57-172 53-160 (199)
66 TIGR03704 PrmC_rel_meth putati 99.6 1E-13 2.2E-18 109.0 15.6 121 58-190 87-230 (251)
67 PRK07402 precorrin-6B methylas 99.6 5.9E-14 1.3E-18 106.4 13.8 106 56-173 39-144 (196)
68 PRK11873 arsM arsenite S-adeno 99.6 1.7E-14 3.8E-19 114.6 11.0 106 56-170 76-182 (272)
69 PRK14967 putative methyltransf 99.6 5.2E-14 1.1E-18 108.8 13.3 108 56-171 35-159 (223)
70 PLN02781 Probable caffeoyl-CoA 99.6 2E-14 4.4E-19 111.8 11.1 104 56-169 67-176 (234)
71 TIGR00080 pimt protein-L-isoas 99.6 2.4E-14 5.2E-19 110.1 11.3 112 44-173 67-179 (215)
72 PRK11188 rrmJ 23S rRNA methylt 99.6 2.3E-14 5E-19 109.7 11.1 132 44-196 40-186 (209)
73 TIGR00406 prmA ribosomal prote 99.6 6.1E-14 1.3E-18 112.4 14.0 120 56-193 158-277 (288)
74 PRK13944 protein-L-isoaspartat 99.6 2.8E-14 6.1E-19 108.9 11.5 103 56-172 71-174 (205)
75 smart00828 PKS_MT Methyltransf 99.6 7.8E-15 1.7E-19 113.3 8.6 104 59-171 1-104 (224)
76 PRK13942 protein-L-isoaspartat 99.6 2.9E-14 6.3E-19 109.4 11.2 115 41-173 63-178 (212)
77 PLN02336 phosphoethanolamine N 99.6 3.1E-14 6.8E-19 121.5 12.6 105 56-171 265-369 (475)
78 TIGR00446 nop2p NOL1/NOP2/sun 99.6 8.3E-14 1.8E-18 110.3 13.8 132 56-194 70-220 (264)
79 PRK04266 fibrillarin; Provisio 99.6 7.6E-14 1.7E-18 107.8 13.1 104 55-170 70-175 (226)
80 COG2518 Pcm Protein-L-isoaspar 99.6 3.2E-14 6.9E-19 107.0 10.5 110 43-172 61-170 (209)
81 PRK01544 bifunctional N5-gluta 99.6 5.9E-14 1.3E-18 120.2 13.4 146 22-172 81-270 (506)
82 COG4122 Predicted O-methyltran 99.6 6.4E-14 1.4E-18 106.7 12.1 105 56-170 58-165 (219)
83 PRK08317 hypothetical protein; 99.6 1.7E-13 3.7E-18 106.3 14.8 106 56-171 18-124 (241)
84 PRK15068 tRNA mo(5)U34 methylt 99.6 5.3E-14 1.1E-18 114.3 12.2 105 57-171 122-226 (322)
85 PF02390 Methyltransf_4: Putat 99.6 3.4E-14 7.3E-19 107.5 10.0 123 60-190 20-148 (195)
86 PRK14903 16S rRNA methyltransf 99.6 1.1E-13 2.4E-18 116.5 13.9 133 56-194 236-387 (431)
87 COG2519 GCD14 tRNA(1-methylade 99.5 6.6E-14 1.4E-18 107.6 11.1 123 55-195 92-216 (256)
88 PRK12335 tellurite resistance 99.5 2.7E-14 5.8E-19 114.4 9.1 103 57-170 120-222 (287)
89 PLN02476 O-methyltransferase 99.5 9.2E-14 2E-18 109.8 11.7 105 56-170 117-227 (278)
90 TIGR00452 methyltransferase, p 99.5 7.4E-14 1.6E-18 112.6 11.4 103 56-171 120-225 (314)
91 PF01596 Methyltransf_3: O-met 99.5 2.1E-14 4.6E-19 109.2 7.8 105 56-170 44-154 (205)
92 PRK06922 hypothetical protein; 99.5 1.1E-13 2.4E-18 119.5 12.6 110 57-171 418-537 (677)
93 PF10672 Methyltrans_SAM: S-ad 99.5 1E-13 2.2E-18 110.0 11.5 128 56-186 122-253 (286)
94 PRK00517 prmA ribosomal protei 99.5 2E-13 4.2E-18 107.4 13.0 112 56-191 118-229 (250)
95 COG2890 HemK Methylase of poly 99.5 3.9E-13 8.4E-18 107.1 14.7 139 23-172 79-239 (280)
96 PRK10901 16S rRNA methyltransf 99.5 1.5E-13 3.3E-18 115.7 13.0 116 56-176 243-377 (427)
97 PRK14902 16S rRNA methyltransf 99.5 1.4E-13 3E-18 116.6 12.6 117 56-176 249-384 (444)
98 PRK11705 cyclopropane fatty ac 99.5 1.3E-13 2.9E-18 114.3 11.9 102 56-171 166-267 (383)
99 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.5E-13 3.3E-18 122.0 13.0 117 57-176 538-661 (702)
100 PF08704 GCD14: tRNA methyltra 99.5 6.7E-14 1.5E-18 108.9 9.4 144 37-196 19-168 (247)
101 PF05401 NodS: Nodulation prot 99.5 5E-14 1.1E-18 104.8 8.1 126 56-193 42-173 (201)
102 PLN03075 nicotianamine synthas 99.5 1.6E-13 3.5E-18 109.0 11.5 110 56-171 122-233 (296)
103 COG2264 PrmA Ribosomal protein 99.5 1.1E-13 2.4E-18 109.7 10.4 123 56-195 161-284 (300)
104 PF01135 PCMT: Protein-L-isoas 99.5 4.7E-14 1E-18 107.6 7.9 116 39-172 57-173 (209)
105 PRK11088 rrmA 23S rRNA methylt 99.5 1.2E-13 2.5E-18 109.9 10.3 97 57-174 85-184 (272)
106 COG0220 Predicted S-adenosylme 99.5 7.3E-13 1.6E-17 102.0 14.0 111 59-173 50-166 (227)
107 TIGR01177 conserved hypothetic 99.5 2.1E-13 4.5E-18 111.3 11.5 111 56-173 181-296 (329)
108 PRK14904 16S rRNA methyltransf 99.5 2.8E-13 6.1E-18 114.7 12.4 115 56-176 249-382 (445)
109 PTZ00146 fibrillarin; Provisio 99.5 1.5E-12 3.1E-17 103.3 15.6 137 45-193 120-265 (293)
110 PHA03411 putative methyltransf 99.5 3.5E-13 7.6E-18 105.7 11.8 118 57-185 64-198 (279)
111 PRK14901 16S rRNA methyltransf 99.5 4.5E-13 9.7E-18 113.1 13.2 115 56-174 251-387 (434)
112 TIGR03587 Pse_Me-ase pseudamin 99.5 1.7E-13 3.7E-18 104.4 9.6 99 56-169 42-140 (204)
113 PLN02672 methionine S-methyltr 99.5 1.5E-12 3.3E-17 118.5 17.1 116 58-173 119-280 (1082)
114 KOG1270|consensus 99.5 4.1E-14 8.8E-19 108.8 5.9 105 58-173 90-197 (282)
115 PRK05785 hypothetical protein; 99.5 5.8E-13 1.2E-17 103.2 12.2 91 57-165 51-141 (226)
116 PLN02336 phosphoethanolamine N 99.5 6.6E-14 1.4E-18 119.5 6.9 105 57-171 37-142 (475)
117 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.7E-12 3.7E-17 99.8 13.9 105 56-171 38-143 (223)
118 TIGR00563 rsmB ribosomal RNA s 99.5 6.5E-13 1.4E-17 111.9 12.2 118 56-176 237-373 (426)
119 TIGR00438 rrmJ cell division p 99.5 7.1E-13 1.5E-17 99.9 11.0 121 56-195 31-166 (188)
120 PRK00216 ubiE ubiquinone/menaq 99.5 7.3E-13 1.6E-17 102.9 11.4 108 56-171 50-158 (239)
121 PLN02589 caffeoyl-CoA O-methyl 99.5 9E-13 1.9E-17 102.9 11.6 105 56-170 78-189 (247)
122 KOG4300|consensus 99.5 4.7E-13 1E-17 99.6 9.3 105 58-171 77-182 (252)
123 PRK14968 putative methyltransf 99.5 1.2E-12 2.6E-17 98.2 11.5 112 56-173 22-150 (188)
124 PF06325 PrmA: Ribosomal prote 99.5 6.2E-14 1.3E-18 111.9 4.5 144 26-190 131-274 (295)
125 PHA03412 putative methyltransf 99.4 5.5E-13 1.2E-17 102.4 9.4 102 57-170 49-161 (241)
126 TIGR03840 TMPT_Se_Te thiopurin 99.4 1E-12 2.2E-17 100.7 10.7 112 56-171 33-152 (213)
127 PF03848 TehB: Tellurite resis 99.4 1.9E-13 4.1E-18 102.4 6.4 104 57-171 30-133 (192)
128 cd02440 AdoMet_MTases S-adenos 99.4 2E-12 4.4E-17 86.4 10.9 102 60-170 1-103 (107)
129 PRK05134 bifunctional 3-demeth 99.4 1.2E-12 2.7E-17 101.7 11.1 106 56-172 47-152 (233)
130 PRK00312 pcm protein-L-isoaspa 99.4 1E-12 2.3E-17 100.8 10.5 100 56-172 77-176 (212)
131 PF13489 Methyltransf_23: Meth 99.4 6.3E-13 1.4E-17 97.0 8.3 97 56-173 21-117 (161)
132 TIGR01983 UbiG ubiquinone bios 99.4 2.2E-12 4.7E-17 99.6 11.0 106 57-172 45-150 (224)
133 KOG2904|consensus 99.4 6.6E-12 1.4E-16 97.2 12.7 124 46-172 137-286 (328)
134 TIGR02716 C20_methyl_CrtF C-20 99.4 1.7E-12 3.6E-17 105.0 9.6 106 56-170 148-253 (306)
135 PRK13943 protein-L-isoaspartat 99.4 6.3E-12 1.4E-16 101.8 12.7 101 56-171 79-180 (322)
136 PRK06202 hypothetical protein; 99.4 1.9E-12 4.2E-17 100.6 9.3 103 56-170 59-165 (232)
137 smart00650 rADc Ribosomal RNA 99.4 5.8E-12 1.2E-16 93.3 11.4 100 56-171 12-113 (169)
138 KOG1271|consensus 99.4 2.7E-12 5.8E-17 93.8 8.6 113 57-175 67-185 (227)
139 TIGR02021 BchM-ChlM magnesium 99.4 5E-12 1.1E-16 97.4 10.6 104 56-170 54-157 (219)
140 PF03602 Cons_hypoth95: Conser 99.4 1.4E-12 3.1E-17 97.6 7.0 109 57-173 42-155 (183)
141 PRK13255 thiopurine S-methyltr 99.4 5.8E-12 1.2E-16 96.9 10.4 110 56-169 36-153 (218)
142 TIGR03438 probable methyltrans 99.4 6.5E-12 1.4E-16 101.3 10.4 112 56-172 62-178 (301)
143 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.4E-11 5.3E-16 102.9 14.2 103 56-172 296-401 (443)
144 TIGR00095 RNA methyltransferas 99.3 1.8E-11 4E-16 92.2 11.8 107 57-172 49-160 (189)
145 smart00138 MeTrc Methyltransfe 99.3 1.4E-12 3E-17 103.3 5.9 112 57-171 99-242 (264)
146 PRK03522 rumB 23S rRNA methylu 99.3 2.2E-11 4.8E-16 98.8 12.6 103 57-172 173-275 (315)
147 PF08003 Methyltransf_9: Prote 99.3 1.3E-11 2.9E-16 97.5 10.9 141 41-197 102-265 (315)
148 COG2263 Predicted RNA methylas 99.3 3.3E-11 7.2E-16 88.9 11.9 94 56-161 44-137 (198)
149 PRK07580 Mg-protoporphyrin IX 99.3 2.1E-11 4.5E-16 94.4 11.2 102 56-168 62-163 (230)
150 PLN02585 magnesium protoporphy 99.3 6.7E-11 1.5E-15 95.6 14.4 104 57-169 144-248 (315)
151 PF07021 MetW: Methionine bios 99.3 1.3E-11 2.7E-16 91.8 8.8 98 56-172 12-110 (193)
152 PRK01544 bifunctional N5-gluta 99.3 7.7E-11 1.7E-15 101.2 14.6 115 56-174 346-465 (506)
153 TIGR02085 meth_trns_rumB 23S r 99.3 4.9E-11 1.1E-15 98.9 12.5 102 57-171 233-334 (374)
154 KOG1541|consensus 99.3 4.4E-11 9.6E-16 90.0 10.9 105 57-172 50-161 (270)
155 COG0742 N6-adenine-specific me 99.3 6.8E-11 1.5E-15 87.8 11.6 111 56-173 42-156 (187)
156 PRK11933 yebU rRNA (cytosine-C 99.3 2.5E-10 5.5E-15 96.7 15.7 133 56-194 112-263 (470)
157 TIGR00479 rumA 23S rRNA (uraci 99.3 3.6E-10 7.9E-15 95.5 16.5 102 56-170 291-395 (431)
158 KOG2899|consensus 99.3 5.4E-11 1.2E-15 90.7 10.1 132 56-190 57-227 (288)
159 PF02475 Met_10: Met-10+ like- 99.2 3.2E-11 6.9E-16 91.3 8.3 139 12-168 57-199 (200)
160 TIGR02081 metW methionine bios 99.2 7.3E-11 1.6E-15 89.3 9.6 91 57-163 13-104 (194)
161 KOG3010|consensus 99.2 4.3E-11 9.3E-16 91.2 7.9 104 59-173 35-139 (261)
162 PRK04338 N(2),N(2)-dimethylgua 99.2 1.1E-10 2.5E-15 96.7 10.9 101 58-171 58-158 (382)
163 PF05891 Methyltransf_PK: AdoM 99.2 2.7E-11 5.9E-16 91.6 6.5 107 57-171 55-161 (218)
164 COG4976 Predicted methyltransf 99.2 7.1E-12 1.5E-16 94.8 3.0 101 58-173 126-227 (287)
165 PRK11727 23S rRNA mA1618 methy 99.2 1.6E-10 3.5E-15 93.3 10.6 85 57-143 114-202 (321)
166 KOG3191|consensus 99.2 3.7E-10 7.9E-15 82.7 11.3 123 56-189 42-182 (209)
167 TIGR02143 trmA_only tRNA (urac 99.2 6.6E-10 1.4E-14 91.5 14.2 99 58-171 198-311 (353)
168 PRK14896 ksgA 16S ribosomal RN 99.2 5.1E-10 1.1E-14 88.4 12.8 101 20-143 4-104 (258)
169 PRK05031 tRNA (uracil-5-)-meth 99.2 4.1E-10 8.8E-15 93.1 12.6 98 59-171 208-320 (362)
170 PTZ00338 dimethyladenosine tra 99.1 4.2E-10 9.1E-15 90.2 10.7 104 20-143 11-114 (294)
171 PRK13256 thiopurine S-methyltr 99.1 3.8E-10 8.3E-15 86.9 10.0 112 56-171 42-163 (226)
172 KOG1663|consensus 99.1 9.6E-10 2.1E-14 83.5 11.8 105 56-170 72-182 (237)
173 PRK00274 ksgA 16S ribosomal RN 99.1 1.3E-09 2.8E-14 86.8 12.1 78 56-143 41-118 (272)
174 TIGR00755 ksgA dimethyladenosi 99.1 1.1E-09 2.3E-14 86.3 11.5 76 56-142 28-106 (253)
175 COG1041 Predicted DNA modifica 99.1 3.7E-10 8E-15 91.0 8.7 119 44-172 186-311 (347)
176 COG2520 Predicted methyltransf 99.1 3.3E-09 7.3E-14 86.0 14.0 154 3-174 133-292 (341)
177 KOG1661|consensus 99.1 3E-10 6.5E-15 84.9 7.3 121 40-172 66-194 (237)
178 PF05724 TPMT: Thiopurine S-me 99.1 3.6E-10 7.8E-15 86.9 7.7 110 56-169 36-153 (218)
179 TIGR00308 TRM1 tRNA(guanine-26 99.1 1.6E-09 3.4E-14 89.6 11.2 101 59-171 46-147 (374)
180 COG3963 Phospholipid N-methylt 99.0 8.1E-09 1.8E-13 74.7 12.5 108 56-174 47-159 (194)
181 COG0030 KsgA Dimethyladenosine 99.0 1.6E-09 3.6E-14 84.6 9.7 103 21-143 6-108 (259)
182 PF01170 UPF0020: Putative RNA 99.0 5.4E-10 1.2E-14 83.5 6.5 111 55-170 26-150 (179)
183 KOG2361|consensus 99.0 4.9E-10 1.1E-14 85.5 5.4 107 57-170 71-182 (264)
184 PF00891 Methyltransf_2: O-met 99.0 8.6E-10 1.9E-14 86.2 6.6 99 56-171 99-199 (241)
185 PF06080 DUF938: Protein of un 99.0 2.4E-09 5.2E-14 80.7 8.5 133 60-194 28-167 (204)
186 COG2265 TrmA SAM-dependent met 99.0 2.1E-08 4.5E-13 84.4 14.9 104 57-173 293-398 (432)
187 COG0144 Sun tRNA and rRNA cyto 99.0 9.6E-09 2.1E-13 84.6 12.7 118 55-176 154-293 (355)
188 PLN02232 ubiquinone biosynthes 99.0 1.4E-09 3.1E-14 79.8 7.0 81 85-171 1-81 (160)
189 PF10294 Methyltransf_16: Puta 99.0 1.5E-09 3.3E-14 80.7 6.9 126 56-190 44-172 (173)
190 PF05185 PRMT5: PRMT5 arginine 98.9 1.9E-09 4E-14 91.1 6.7 107 58-171 187-297 (448)
191 PF05219 DREV: DREV methyltran 98.9 3.9E-08 8.5E-13 76.4 12.9 95 57-171 94-188 (265)
192 KOG2940|consensus 98.9 1.6E-09 3.4E-14 82.3 4.8 102 58-171 73-174 (325)
193 KOG2352|consensus 98.9 4.2E-09 9E-14 87.9 7.3 133 57-195 295-438 (482)
194 PF03291 Pox_MCEL: mRNA cappin 98.9 2.4E-09 5.3E-14 87.1 5.2 116 57-173 62-188 (331)
195 KOG1500|consensus 98.9 1.8E-08 3.9E-13 80.5 9.6 109 56-173 176-284 (517)
196 PF09445 Methyltransf_15: RNA 98.8 5.9E-09 1.3E-13 76.2 5.7 75 60-139 2-78 (163)
197 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 6.9E-09 1.5E-13 83.0 6.6 135 55-195 83-241 (283)
198 PF01728 FtsJ: FtsJ-like methy 98.8 5E-08 1.1E-12 72.9 10.6 119 40-173 6-141 (181)
199 TIGR00478 tly hemolysin TlyA f 98.8 1.4E-07 3E-12 73.0 13.1 120 25-171 45-171 (228)
200 KOG3420|consensus 98.8 1.3E-08 2.8E-13 72.1 6.2 98 56-162 47-144 (185)
201 PF05958 tRNA_U5-meth_tr: tRNA 98.8 3.7E-08 8E-13 81.2 9.8 101 58-174 197-312 (352)
202 TIGR02987 met_A_Alw26 type II 98.8 2.1E-08 4.7E-13 86.8 8.4 127 57-187 31-212 (524)
203 COG0293 FtsJ 23S rRNA methylas 98.8 7.4E-08 1.6E-12 72.7 10.0 132 44-196 34-180 (205)
204 KOG1709|consensus 98.8 5.9E-08 1.3E-12 73.1 9.3 105 56-170 100-205 (271)
205 PF02384 N6_Mtase: N-6 DNA Met 98.8 6.1E-09 1.3E-13 84.4 4.2 116 56-173 45-185 (311)
206 KOG1499|consensus 98.8 1.7E-08 3.6E-13 81.2 6.3 105 56-171 59-167 (346)
207 PRK00050 16S rRNA m(4)C1402 me 98.7 9.2E-08 2E-12 76.6 10.1 86 44-138 9-98 (296)
208 KOG0820|consensus 98.7 6.8E-08 1.5E-12 75.2 8.7 80 56-143 57-136 (315)
209 PF12147 Methyltransf_20: Puta 98.7 1.7E-07 3.7E-12 73.8 10.9 128 56-190 134-265 (311)
210 PF02527 GidB: rRNA small subu 98.7 3E-07 6.5E-12 68.8 11.2 100 60-173 51-150 (184)
211 KOG2915|consensus 98.7 8E-08 1.7E-12 74.7 8.3 124 52-191 100-226 (314)
212 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.6E-07 3.5E-12 83.9 10.6 115 56-173 189-349 (702)
213 KOG1975|consensus 98.7 3.5E-08 7.7E-13 78.4 5.6 117 56-173 116-239 (389)
214 PF00398 RrnaAD: Ribosomal RNA 98.6 2E-07 4.4E-12 73.8 8.8 112 21-159 6-119 (262)
215 COG0116 Predicted N6-adenine-s 98.6 3.7E-07 8.1E-12 74.8 10.0 115 53-172 187-345 (381)
216 PRK10742 putative methyltransf 98.6 4E-07 8.7E-12 70.7 8.5 82 60-143 91-177 (250)
217 PF13578 Methyltransf_24: Meth 98.5 9.4E-08 2E-12 65.1 3.8 96 62-169 1-103 (106)
218 PRK01747 mnmC bifunctional tRN 98.5 1.2E-06 2.6E-11 78.0 11.4 113 58-171 58-206 (662)
219 PF03141 Methyltransf_29: Puta 98.5 2.8E-07 6E-12 77.5 6.5 97 59-171 119-219 (506)
220 PF01269 Fibrillarin: Fibrilla 98.5 3.7E-06 8.1E-11 64.1 11.9 122 53-190 69-202 (229)
221 KOG3178|consensus 98.5 6.2E-07 1.3E-11 72.4 7.7 98 59-172 179-276 (342)
222 KOG1122|consensus 98.5 8.2E-07 1.8E-11 73.0 8.5 135 56-196 240-394 (460)
223 COG4076 Predicted RNA methylas 98.5 2.9E-07 6.3E-12 68.0 5.0 100 59-170 34-134 (252)
224 PF05148 Methyltransf_8: Hypot 98.4 1.3E-06 2.8E-11 65.9 8.2 104 56-189 71-174 (219)
225 PRK04148 hypothetical protein; 98.4 6.9E-07 1.5E-11 63.1 6.1 70 56-138 15-85 (134)
226 KOG2187|consensus 98.4 3.2E-06 6.9E-11 71.3 10.9 103 56-170 382-489 (534)
227 PRK10611 chemotaxis methyltran 98.4 5.7E-07 1.2E-11 71.8 5.0 111 58-170 116-261 (287)
228 PF08123 DOT1: Histone methyla 98.3 3.6E-06 7.9E-11 64.1 8.3 109 56-169 41-156 (205)
229 PF01739 CheR: CheR methyltran 98.3 1.1E-06 2.4E-11 66.5 5.0 111 57-170 31-174 (196)
230 PF07942 N2227: N2227-like pro 98.3 6.7E-06 1.4E-10 65.0 9.5 111 56-173 55-203 (270)
231 COG0357 GidB Predicted S-adeno 98.3 3.6E-06 7.7E-11 64.3 7.4 99 58-169 68-166 (215)
232 KOG3115|consensus 98.3 3E-06 6.5E-11 63.4 6.7 113 59-171 62-183 (249)
233 COG1889 NOP1 Fibrillarin-like 98.3 4.4E-05 9.5E-10 57.3 12.5 136 44-191 63-205 (231)
234 KOG2198|consensus 98.3 9.8E-06 2.1E-10 65.9 9.8 136 55-194 153-321 (375)
235 PF03059 NAS: Nicotianamine sy 98.2 9.6E-06 2.1E-10 64.3 9.1 108 57-171 120-230 (276)
236 KOG4589|consensus 98.2 1.4E-05 3E-10 59.3 8.7 122 56-196 68-205 (232)
237 KOG3045|consensus 98.1 2.1E-05 4.6E-10 61.1 8.6 88 56-173 179-266 (325)
238 TIGR03439 methyl_EasF probable 98.1 7.7E-05 1.7E-09 60.6 12.1 109 56-171 75-197 (319)
239 PF09243 Rsm22: Mitochondrial 98.1 2.4E-05 5.2E-10 62.4 9.0 124 56-189 32-157 (274)
240 COG1352 CheR Methylase of chem 98.1 2E-05 4.3E-10 62.4 8.3 110 57-169 96-239 (268)
241 PRK11760 putative 23S rRNA C24 98.1 5.4E-05 1.2E-09 61.5 10.7 112 56-189 210-324 (357)
242 PF05430 Methyltransf_30: S-ad 98.1 1.7E-05 3.8E-10 55.5 6.8 62 111-173 31-92 (124)
243 COG1189 Predicted rRNA methyla 98.1 4.1E-05 8.9E-10 58.9 9.1 116 37-171 61-178 (245)
244 COG3897 Predicted methyltransf 98.0 2E-05 4.3E-10 58.8 6.5 100 57-171 79-178 (218)
245 TIGR01444 fkbM_fam methyltrans 98.0 1.8E-05 4E-10 56.5 5.5 57 60-120 1-57 (143)
246 KOG2730|consensus 98.0 5.9E-05 1.3E-09 57.3 8.3 78 57-139 94-174 (263)
247 PF01861 DUF43: Protein of unk 98.0 6.1E-05 1.3E-09 58.2 8.6 101 57-168 44-145 (243)
248 COG0500 SmtA SAM-dependent met 98.0 0.00012 2.5E-09 51.7 9.7 103 61-173 52-157 (257)
249 PF05971 Methyltransf_10: Prot 98.0 7.9E-06 1.7E-10 65.4 3.8 84 58-144 103-191 (299)
250 TIGR00006 S-adenosyl-methyltra 97.9 0.00011 2.5E-09 59.1 9.8 78 56-138 19-100 (305)
251 PF02005 TRM: N2,N2-dimethylgu 97.9 5.3E-05 1.2E-09 63.0 7.6 104 58-171 50-154 (377)
252 KOG0822|consensus 97.8 4.9E-05 1.1E-09 64.5 6.6 124 58-189 368-496 (649)
253 PF04672 Methyltransf_19: S-ad 97.8 0.00028 6E-09 55.6 10.5 126 59-191 70-210 (267)
254 PF04816 DUF633: Family of unk 97.8 0.00016 3.5E-09 55.1 8.6 101 61-171 1-101 (205)
255 KOG3987|consensus 97.8 2.7E-05 5.9E-10 58.7 3.7 95 56-170 111-206 (288)
256 PF13679 Methyltransf_32: Meth 97.7 8.1E-05 1.7E-09 53.4 5.7 103 56-171 24-131 (141)
257 COG1867 TRM1 N2,N2-dimethylgua 97.7 0.00038 8.2E-09 56.9 9.7 102 58-171 53-154 (380)
258 KOG2352|consensus 97.7 0.00049 1.1E-08 58.1 10.4 144 22-172 9-162 (482)
259 PF04445 SAM_MT: Putative SAM- 97.6 1.6E-05 3.5E-10 61.4 0.8 83 59-143 77-164 (234)
260 PF01795 Methyltransf_5: MraW 97.6 0.00034 7.4E-09 56.4 8.2 87 44-138 10-101 (310)
261 COG0286 HsdM Type I restrictio 97.6 0.00038 8.2E-09 60.0 8.9 114 57-173 186-328 (489)
262 KOG1269|consensus 97.5 9.9E-05 2.1E-09 60.9 4.1 106 56-170 109-214 (364)
263 PF06962 rRNA_methylase: Putat 97.5 0.00069 1.5E-08 48.3 7.7 102 83-189 1-111 (140)
264 PF04989 CmcI: Cephalosporin h 97.5 0.00072 1.6E-08 51.3 7.6 115 39-170 20-146 (206)
265 COG2384 Predicted SAM-dependen 97.4 0.0016 3.5E-08 49.6 9.4 105 56-170 15-119 (226)
266 PRK11524 putative methyltransf 97.4 0.0012 2.5E-08 53.0 9.2 61 111-171 7-80 (284)
267 cd00315 Cyt_C5_DNA_methylase C 97.4 0.0004 8.6E-09 55.4 6.3 118 60-190 2-133 (275)
268 KOG3201|consensus 97.4 0.00026 5.7E-09 51.4 4.3 125 58-190 30-156 (201)
269 PF11599 AviRa: RRNA methyltra 97.4 0.00089 1.9E-08 50.9 7.2 115 55-169 49-212 (246)
270 COG0275 Predicted S-adenosylme 97.4 0.0019 4.2E-08 51.5 9.2 78 56-138 22-104 (314)
271 PF07091 FmrO: Ribosomal RNA m 97.3 0.00048 1E-08 53.6 5.6 75 56-137 104-178 (251)
272 KOG1099|consensus 97.3 0.00032 6.8E-09 53.8 4.2 121 58-197 42-185 (294)
273 KOG1596|consensus 97.3 0.0024 5.3E-08 49.4 8.8 106 55-176 154-266 (317)
274 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00022 4.8E-09 56.1 2.4 112 57-171 56-199 (256)
275 KOG1331|consensus 97.1 0.00037 8.1E-09 55.0 2.9 101 57-173 45-145 (293)
276 COG1064 AdhP Zn-dependent alco 97.1 0.0063 1.4E-07 49.8 10.1 96 56-173 165-261 (339)
277 PF11968 DUF3321: Putative met 97.1 0.0026 5.6E-08 48.5 7.3 107 58-187 52-171 (219)
278 KOG2671|consensus 97.1 0.00052 1.1E-08 55.6 3.4 114 55-172 206-355 (421)
279 PRK13699 putative methylase; P 96.9 0.0023 4.9E-08 49.7 5.8 59 113-171 2-72 (227)
280 COG5459 Predicted rRNA methyla 96.9 0.006 1.3E-07 49.8 8.2 111 55-171 111-225 (484)
281 PTZ00357 methyltransferase; Pr 96.8 0.0058 1.3E-07 54.0 7.9 105 60-166 703-830 (1072)
282 PF10354 DUF2431: Domain of un 96.8 0.0015 3.3E-08 48.2 3.8 107 62-173 1-127 (166)
283 KOG1253|consensus 96.8 0.0019 4.1E-08 54.7 4.5 104 57-171 109-216 (525)
284 PHA01634 hypothetical protein 96.7 0.0046 1E-07 43.2 5.3 74 56-138 27-100 (156)
285 COG1063 Tdh Threonine dehydrog 96.7 0.025 5.5E-07 46.7 10.8 99 58-173 169-271 (350)
286 KOG1098|consensus 96.7 0.0034 7.3E-08 54.6 5.3 120 56-194 43-177 (780)
287 PF12692 Methyltransf_17: S-ad 96.6 0.0028 6.1E-08 45.3 3.7 113 46-169 17-132 (160)
288 COG4798 Predicted methyltransf 96.6 0.01 2.2E-07 44.6 6.5 113 53-171 44-166 (238)
289 KOG0024|consensus 96.4 0.03 6.4E-07 45.4 8.7 101 56-171 168-273 (354)
290 COG1568 Predicted methyltransf 96.4 0.016 3.5E-07 45.9 7.1 105 57-171 152-260 (354)
291 KOG2798|consensus 96.4 0.009 1.9E-07 48.0 5.7 107 57-169 150-294 (369)
292 KOG2793|consensus 96.4 0.01 2.2E-07 46.5 5.9 106 57-169 86-197 (248)
293 TIGR00675 dcm DNA-methyltransf 96.3 0.014 3E-07 47.6 6.5 69 61-140 1-69 (315)
294 KOG1501|consensus 96.3 0.0059 1.3E-07 51.2 4.2 56 59-118 68-123 (636)
295 PRK09880 L-idonate 5-dehydroge 96.3 0.043 9.3E-07 44.9 9.4 97 57-171 169-266 (343)
296 cd08283 FDH_like_1 Glutathione 96.2 0.051 1.1E-06 45.4 9.8 109 56-171 183-306 (386)
297 COG3129 Predicted SAM-dependen 96.2 0.012 2.6E-07 45.4 5.3 84 57-143 78-166 (292)
298 PF03141 Methyltransf_29: Puta 96.2 0.011 2.4E-07 50.4 5.6 100 58-170 366-466 (506)
299 PF00145 DNA_methylase: C-5 cy 96.1 0.011 2.3E-07 47.9 5.1 117 60-190 2-132 (335)
300 PRK11524 putative methyltransf 96.1 0.014 3E-07 46.8 5.6 57 45-103 196-252 (284)
301 PF01555 N6_N4_Mtase: DNA meth 96.0 0.0098 2.1E-07 45.4 4.3 42 56-99 190-231 (231)
302 PRK09424 pntA NAD(P) transhydr 95.9 0.11 2.3E-06 45.2 10.5 111 56-172 163-286 (509)
303 COG0270 Dcm Site-specific DNA 95.9 0.042 9.1E-07 45.0 7.5 72 59-140 4-77 (328)
304 PRK10458 DNA cytosine methylas 95.8 0.058 1.3E-06 46.3 8.3 76 58-140 88-179 (467)
305 TIGR00518 alaDH alanine dehydr 95.8 0.14 3E-06 42.8 10.3 101 57-171 166-267 (370)
306 PF03269 DUF268: Caenorhabditi 95.6 0.037 7.9E-07 40.4 5.5 102 58-171 2-111 (177)
307 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.034 7.3E-07 38.6 5.4 90 67-174 1-92 (130)
308 PF07279 DUF1442: Protein of u 95.4 0.46 1E-05 36.4 10.8 90 44-139 30-124 (218)
309 TIGR00561 pntA NAD(P) transhyd 95.3 0.2 4.4E-06 43.4 10.0 108 57-170 163-283 (511)
310 KOG2078|consensus 95.3 0.065 1.4E-06 44.9 6.6 66 56-125 248-313 (495)
311 cd08230 glucose_DH Glucose deh 95.3 0.17 3.6E-06 41.6 9.3 95 56-171 171-269 (355)
312 cd08281 liver_ADH_like1 Zinc-d 95.3 0.21 4.5E-06 41.4 9.7 99 56-171 190-290 (371)
313 PRK13699 putative methylase; P 95.2 0.052 1.1E-06 42.1 5.6 45 56-102 162-206 (227)
314 PF14314 Methyltrans_Mon: Viru 95.2 0.048 1E-06 48.5 5.8 68 128-196 413-480 (675)
315 TIGR03451 mycoS_dep_FDH mycoth 95.2 0.25 5.5E-06 40.7 9.9 99 56-171 175-276 (358)
316 COG0686 Ald Alanine dehydrogen 95.1 0.33 7.2E-06 39.3 9.7 100 57-170 167-267 (371)
317 PF05711 TylF: Macrocin-O-meth 95.1 0.39 8.4E-06 37.8 10.0 107 56-170 73-211 (248)
318 PLN03154 putative allyl alcoho 95.0 0.4 8.8E-06 39.4 10.5 98 56-171 157-258 (348)
319 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.1 2.2E-06 37.9 6.3 100 60-171 1-103 (157)
320 KOG1227|consensus 94.9 0.017 3.7E-07 46.2 2.1 96 57-166 194-290 (351)
321 COG4301 Uncharacterized conser 94.9 0.27 5.8E-06 38.6 8.4 109 57-171 78-193 (321)
322 TIGR01202 bchC 2-desacetyl-2-h 94.8 0.23 5E-06 40.1 8.6 87 57-171 144-231 (308)
323 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.23 5E-06 37.2 8.0 124 59-187 1-137 (185)
324 PF06859 Bin3: Bicoid-interact 94.7 0.00099 2.1E-08 45.3 -4.5 40 130-171 1-44 (110)
325 cd08254 hydroxyacyl_CoA_DH 6-h 94.7 0.41 9E-06 38.6 9.8 98 56-171 164-263 (338)
326 cd08237 ribitol-5-phosphate_DH 94.6 0.4 8.7E-06 39.3 9.7 93 56-171 162-256 (341)
327 PF01262 AlaDh_PNT_C: Alanine 94.6 0.075 1.6E-06 39.1 4.9 102 57-171 19-139 (168)
328 TIGR03366 HpnZ_proposed putati 94.6 1.1 2.4E-05 35.5 11.9 96 57-171 120-218 (280)
329 cd05188 MDR Medium chain reduc 94.6 0.53 1.2E-05 36.4 10.0 99 56-172 133-233 (271)
330 cd08239 THR_DH_like L-threonin 94.5 0.7 1.5E-05 37.5 10.7 99 56-171 162-262 (339)
331 cd08293 PTGR2 Prostaglandin re 94.4 0.46 1E-05 38.6 9.6 96 59-171 156-254 (345)
332 TIGR00497 hsdM type I restrict 94.2 0.29 6.2E-06 42.6 8.3 112 58-171 218-355 (501)
333 PF04378 RsmJ: Ribosomal RNA s 94.1 0.77 1.7E-05 36.0 9.7 118 62-191 62-182 (245)
334 KOG2912|consensus 94.0 0.31 6.8E-06 39.5 7.3 77 61-140 106-188 (419)
335 COG4121 Uncharacterized conser 94.0 0.074 1.6E-06 41.8 3.7 112 59-171 60-208 (252)
336 PF07757 AdoMet_MTase: Predict 93.9 0.052 1.1E-06 36.8 2.5 34 57-92 58-91 (112)
337 KOG0821|consensus 93.9 0.069 1.5E-06 41.1 3.3 59 58-122 51-109 (326)
338 cd08294 leukotriene_B4_DH_like 93.8 0.86 1.9E-05 36.6 10.0 96 56-170 142-240 (329)
339 PRK10309 galactitol-1-phosphat 93.7 0.83 1.8E-05 37.3 9.8 100 56-171 159-260 (347)
340 KOG2920|consensus 93.7 0.06 1.3E-06 42.8 2.8 111 56-171 115-234 (282)
341 COG0604 Qor NADPH:quinone redu 93.7 0.91 2E-05 37.2 9.8 98 56-172 141-242 (326)
342 KOG4058|consensus 93.6 0.11 2.4E-06 37.4 3.8 50 50-100 65-114 (199)
343 TIGR02825 B4_12hDH leukotriene 93.5 1.4 3.1E-05 35.5 10.8 97 56-171 137-237 (325)
344 PF02636 Methyltransf_28: Puta 93.5 0.096 2.1E-06 41.2 3.7 46 58-103 19-72 (252)
345 cd08285 NADP_ADH NADP(H)-depen 93.5 1.1 2.5E-05 36.5 10.2 98 56-170 165-265 (351)
346 PRK05562 precorrin-2 dehydroge 93.4 0.63 1.4E-05 36.0 8.0 82 41-138 8-93 (223)
347 PF02826 2-Hacid_dh_C: D-isome 93.3 2.5 5.5E-05 31.3 11.8 91 57-173 35-128 (178)
348 PRK11064 wecC UDP-N-acetyl-D-m 93.3 2.2 4.8E-05 36.2 11.8 102 59-173 4-121 (415)
349 cd08295 double_bond_reductase_ 93.1 1.7 3.7E-05 35.3 10.7 98 56-171 150-251 (338)
350 cd05278 FDH_like Formaldehyde 93.1 1.3 2.9E-05 35.9 10.0 98 56-170 166-266 (347)
351 TIGR00936 ahcY adenosylhomocys 93.0 3.2 7E-05 35.1 12.2 102 56-185 193-297 (406)
352 PLN02353 probable UDP-glucose 93.0 2.3 5E-05 36.8 11.6 111 59-174 2-130 (473)
353 cd08232 idonate-5-DH L-idonate 93.0 0.91 2E-05 36.8 8.8 97 57-171 165-262 (339)
354 PF10237 N6-adenineMlase: Prob 92.9 1.1 2.3E-05 33.0 8.2 99 57-171 25-123 (162)
355 PLN02740 Alcohol dehydrogenase 92.8 1.5 3.3E-05 36.4 10.1 99 56-171 197-300 (381)
356 PTZ00117 malate dehydrogenase; 92.8 2.9 6.3E-05 34.2 11.4 108 58-173 5-124 (319)
357 PLN02827 Alcohol dehydrogenase 92.6 1.4 3E-05 36.7 9.6 99 56-171 192-295 (378)
358 KOG2539|consensus 92.6 0.75 1.6E-05 39.2 7.8 126 56-186 199-330 (491)
359 PRK08293 3-hydroxybutyryl-CoA 92.6 0.82 1.8E-05 36.6 7.9 103 59-171 4-120 (287)
360 COG1565 Uncharacterized conser 92.6 0.28 6.1E-06 40.5 5.2 51 53-103 73-131 (370)
361 TIGR03201 dearomat_had 6-hydro 92.2 2.9 6.2E-05 34.3 10.9 98 56-171 165-272 (349)
362 PRK06223 malate dehydrogenase; 92.1 4.7 0.0001 32.5 11.9 108 59-173 3-121 (307)
363 PRK07502 cyclohexadienyl dehyd 92.1 1.5 3.3E-05 35.4 9.0 89 59-168 7-97 (307)
364 PRK09260 3-hydroxybutyryl-CoA 91.9 0.46 1E-05 38.0 5.8 102 59-172 2-118 (288)
365 cd08261 Zn_ADH7 Alcohol dehydr 91.9 2.2 4.7E-05 34.6 9.8 98 56-171 158-258 (337)
366 PF07669 Eco57I: Eco57I restri 91.7 0.49 1.1E-05 32.0 4.8 57 130-189 2-70 (106)
367 COG2961 ComJ Protein involved 91.6 5.6 0.00012 31.4 11.0 118 62-191 93-213 (279)
368 PRK00066 ldh L-lactate dehydro 91.6 5.6 0.00012 32.4 11.7 110 56-172 4-123 (315)
369 cd08234 threonine_DH_like L-th 91.5 2 4.3E-05 34.6 9.2 99 56-171 158-257 (334)
370 PF11899 DUF3419: Protein of u 91.5 0.79 1.7E-05 38.4 6.8 60 111-173 275-336 (380)
371 cd00401 AdoHcyase S-adenosyl-L 91.2 2.5 5.5E-05 35.8 9.6 87 57-171 201-289 (413)
372 PF01555 N6_N4_Mtase: DNA meth 91.2 0.45 9.8E-06 36.1 4.9 46 131-176 1-61 (231)
373 cd05285 sorbitol_DH Sorbitol d 91.2 3 6.5E-05 33.9 9.9 99 56-171 161-265 (343)
374 TIGR00027 mthyl_TIGR00027 meth 91.2 3 6.5E-05 33.0 9.5 112 57-174 81-200 (260)
375 PRK05225 ketol-acid reductoiso 91.0 1.1 2.4E-05 38.3 7.2 90 57-170 35-130 (487)
376 cd08277 liver_alcohol_DH_like 91.0 4 8.6E-05 33.7 10.6 99 56-171 183-286 (365)
377 TIGR02818 adh_III_F_hyde S-(hy 90.9 3.5 7.5E-05 34.1 10.2 99 56-171 184-287 (368)
378 COG1748 LYS9 Saccharopine dehy 90.7 2 4.3E-05 36.1 8.4 74 59-140 2-78 (389)
379 cd08233 butanediol_DH_like (2R 90.6 3.3 7.1E-05 33.8 9.7 99 56-171 171-272 (351)
380 COG4017 Uncharacterized protei 90.6 0.45 9.8E-06 35.9 4.1 39 55-95 42-81 (254)
381 COG0287 TyrA Prephenate dehydr 90.6 1.2 2.7E-05 35.6 6.9 90 59-168 4-95 (279)
382 PF02254 TrkA_N: TrkA-N domain 90.6 3.3 7.1E-05 27.9 8.3 93 61-173 1-98 (116)
383 cd08300 alcohol_DH_class_III c 90.6 4.5 9.8E-05 33.4 10.6 99 56-171 185-288 (368)
384 TIGR02822 adh_fam_2 zinc-bindi 90.6 3.1 6.7E-05 33.9 9.4 90 56-171 164-254 (329)
385 cd08278 benzyl_alcohol_DH Benz 90.4 4.9 0.00011 33.2 10.6 99 56-171 185-285 (365)
386 cd05291 HicDH_like L-2-hydroxy 90.2 7.5 0.00016 31.5 11.3 107 60-173 2-119 (306)
387 PRK12475 thiamine/molybdopteri 90.2 0.87 1.9E-05 37.5 5.9 34 58-91 24-58 (338)
388 cd08236 sugar_DH NAD(P)-depend 90.0 4.3 9.4E-05 32.9 9.9 99 56-171 158-258 (343)
389 KOG2651|consensus 90.0 0.57 1.2E-05 39.0 4.5 40 59-99 155-194 (476)
390 cd08238 sorbose_phosphate_red 90.0 7 0.00015 32.9 11.4 105 56-171 174-288 (410)
391 PRK07530 3-hydroxybutyryl-CoA 89.9 2.1 4.5E-05 34.3 7.8 102 59-173 5-121 (292)
392 PLN02668 indole-3-acetate carb 89.8 2.4 5.1E-05 35.6 8.2 19 57-75 63-81 (386)
393 PRK03562 glutathione-regulated 89.8 4.4 9.6E-05 36.3 10.4 95 58-171 400-498 (621)
394 PRK10083 putative oxidoreducta 89.8 4.2 9.1E-05 32.9 9.6 99 56-171 159-259 (339)
395 TIGR02356 adenyl_thiF thiazole 89.6 1.2 2.6E-05 33.8 5.9 33 58-90 21-54 (202)
396 cd08286 FDH_like_ADH2 formalde 89.6 6.8 0.00015 31.8 10.8 99 56-171 165-266 (345)
397 PLN02586 probable cinnamyl alc 89.5 5.9 0.00013 32.7 10.4 95 56-171 182-278 (360)
398 cd08301 alcohol_DH_plants Plan 89.2 9.7 0.00021 31.4 11.5 99 56-171 186-289 (369)
399 PF00106 adh_short: short chai 89.2 4.8 0.0001 28.7 8.7 77 59-142 1-92 (167)
400 PRK08213 gluconate 5-dehydroge 89.0 5.9 0.00013 30.7 9.6 77 57-139 11-98 (259)
401 cd00757 ThiF_MoeB_HesA_family 88.9 1.3 2.8E-05 34.2 5.7 33 58-90 21-54 (228)
402 TIGR02819 fdhA_non_GSH formald 88.8 6.8 0.00015 32.9 10.4 109 56-172 184-300 (393)
403 COG1062 AdhC Zn-dependent alco 88.7 7.7 0.00017 32.1 10.1 100 56-171 184-285 (366)
404 cd05288 PGDH Prostaglandin deh 88.6 6.9 0.00015 31.3 10.1 98 56-171 144-244 (329)
405 cd08243 quinone_oxidoreductase 88.6 9.4 0.0002 30.2 10.8 96 56-171 141-238 (320)
406 PRK05476 S-adenosyl-L-homocyst 88.5 5.5 0.00012 34.0 9.6 87 57-171 211-299 (425)
407 cd08245 CAD Cinnamyl alcohol d 88.5 8.9 0.00019 30.8 10.7 95 56-171 161-256 (330)
408 PF06460 NSP13: Coronavirus NS 88.4 1.8 4E-05 34.2 6.1 114 41-173 43-171 (299)
409 PRK06130 3-hydroxybutyryl-CoA 88.4 2.2 4.9E-05 34.4 7.1 101 59-171 5-115 (311)
410 PRK12921 2-dehydropantoate 2-r 88.4 3.6 7.8E-05 32.9 8.2 95 60-170 2-101 (305)
411 PRK06035 3-hydroxyacyl-CoA deh 88.3 2.7 5.8E-05 33.7 7.4 99 59-170 4-120 (291)
412 PRK12439 NAD(P)H-dependent gly 88.2 8.5 0.00018 31.7 10.4 100 56-170 5-110 (341)
413 PF11312 DUF3115: Protein of u 88.2 0.49 1.1E-05 38.3 3.0 112 59-170 88-241 (315)
414 cd08255 2-desacetyl-2-hydroxye 88.1 6.4 0.00014 30.8 9.4 93 56-171 96-190 (277)
415 KOG1209|consensus 87.7 5.8 0.00012 30.8 8.2 77 56-140 5-91 (289)
416 PLN02494 adenosylhomocysteinas 87.7 10 0.00023 32.8 10.7 99 57-182 253-353 (477)
417 TIGR01470 cysG_Nterm siroheme 87.6 5.7 0.00012 30.3 8.4 68 56-139 7-78 (205)
418 PLN02514 cinnamyl-alcohol dehy 87.5 12 0.00026 30.8 10.9 95 57-171 180-275 (357)
419 cd08296 CAD_like Cinnamyl alco 87.4 8.1 0.00017 31.3 9.8 97 56-171 162-259 (333)
420 TIGR00692 tdh L-threonine 3-de 87.4 9.7 0.00021 30.9 10.3 99 56-171 160-261 (340)
421 PF05050 Methyltransf_21: Meth 87.4 1.1 2.4E-05 32.1 4.3 38 63-100 1-42 (167)
422 PRK10637 cysG siroheme synthas 87.4 4.1 9E-05 35.0 8.3 74 49-138 3-80 (457)
423 cd05290 LDH_3 A subgroup of L- 87.3 14 0.00031 30.0 11.7 108 60-173 1-121 (307)
424 PRK03659 glutathione-regulated 87.2 3.7 8E-05 36.6 8.2 96 59-173 401-500 (601)
425 PF02737 3HCDH_N: 3-hydroxyacy 87.2 1.6 3.4E-05 32.5 5.1 101 60-173 1-116 (180)
426 PRK07688 thiamine/molybdopteri 87.2 2.3 5E-05 35.1 6.4 32 58-90 24-57 (339)
427 TIGR01763 MalateDH_bact malate 87.1 15 0.00032 29.8 11.7 107 59-173 2-120 (305)
428 TIGR03376 glycerol3P_DH glycer 87.0 10 0.00022 31.4 10.1 97 60-168 1-113 (342)
429 PRK09422 ethanol-active dehydr 87.0 9.3 0.0002 30.8 9.9 99 56-171 161-261 (338)
430 PF01408 GFO_IDH_MocA: Oxidore 87.0 7.3 0.00016 26.2 10.2 108 60-191 2-112 (120)
431 cd05281 TDH Threonine dehydrog 87.0 10 0.00022 30.8 10.1 99 56-171 162-262 (341)
432 cd08263 Zn_ADH10 Alcohol dehyd 86.9 7.1 0.00015 32.1 9.3 99 56-171 186-287 (367)
433 PRK08410 2-hydroxyacid dehydro 86.9 11 0.00024 30.7 10.2 87 57-170 144-231 (311)
434 PRK15116 sulfur acceptor prote 86.8 3.6 7.9E-05 32.8 7.1 34 57-90 29-63 (268)
435 PLN02702 L-idonate 5-dehydroge 86.7 6.9 0.00015 32.1 9.2 99 56-171 180-285 (364)
436 cd05297 GH4_alpha_glucosidase_ 86.7 0.89 1.9E-05 38.7 3.9 75 60-139 2-83 (423)
437 cd05279 Zn_ADH1 Liver alcohol 86.7 12 0.00026 30.8 10.6 99 56-171 182-285 (365)
438 PRK08306 dipicolinate synthase 86.7 5 0.00011 32.4 8.0 91 57-172 151-242 (296)
439 PRK07417 arogenate dehydrogena 86.7 4.4 9.5E-05 32.3 7.7 84 60-167 2-87 (279)
440 cd00755 YgdL_like Family of ac 86.6 2.4 5.1E-05 33.0 5.9 34 58-91 11-45 (231)
441 KOG3924|consensus 86.5 2.2 4.8E-05 35.7 5.9 112 53-169 188-306 (419)
442 PRK05867 short chain dehydroge 86.3 9.4 0.0002 29.4 9.3 77 57-139 8-95 (253)
443 PRK07523 gluconate 5-dehydroge 86.3 13 0.00028 28.7 10.0 78 57-140 9-97 (255)
444 PRK07066 3-hydroxybutyryl-CoA 86.3 5.8 0.00013 32.5 8.2 101 59-171 8-119 (321)
445 PRK05786 fabG 3-ketoacyl-(acyl 86.1 13 0.00028 28.2 11.0 108 57-171 4-135 (238)
446 PRK15076 alpha-galactosidase; 86.0 12 0.00026 32.0 10.4 76 59-139 2-84 (431)
447 PRK08324 short chain dehydroge 86.0 20 0.00044 32.5 12.3 106 58-171 422-557 (681)
448 COG0677 WecC UDP-N-acetyl-D-ma 86.0 18 0.00039 30.6 10.8 105 59-174 10-131 (436)
449 PRK07677 short chain dehydroge 85.9 11 0.00024 29.0 9.5 75 59-139 2-87 (252)
450 cd01488 Uba3_RUB Ubiquitin act 85.9 2.1 4.5E-05 34.5 5.4 31 60-90 1-32 (291)
451 KOG0022|consensus 85.9 17 0.00037 29.9 10.4 100 56-170 191-293 (375)
452 PRK06949 short chain dehydroge 85.8 14 0.0003 28.4 10.6 77 57-139 8-95 (258)
453 PRK05396 tdh L-threonine 3-deh 85.7 12 0.00027 30.2 10.1 98 57-171 163-263 (341)
454 TIGR03026 NDP-sugDHase nucleot 85.6 21 0.00045 30.2 12.7 105 60-171 2-120 (411)
455 PF02153 PDH: Prephenate dehyd 85.5 2.4 5.2E-05 33.4 5.6 76 72-169 2-77 (258)
456 PTZ00082 L-lactate dehydrogena 85.5 19 0.0004 29.5 13.1 103 59-173 7-130 (321)
457 cd08266 Zn_ADH_like1 Alcohol d 85.5 13 0.00028 29.7 10.0 97 56-171 165-265 (342)
458 PLN02178 cinnamyl-alcohol dehy 85.4 17 0.00038 30.2 10.9 94 57-171 178-273 (375)
459 PRK07576 short chain dehydroge 85.4 14 0.00031 28.8 10.0 77 57-139 8-95 (264)
460 KOG0023|consensus 85.2 5.7 0.00012 32.6 7.4 98 56-171 180-279 (360)
461 PRK07454 short chain dehydroge 85.1 15 0.00032 28.0 10.2 76 58-139 6-92 (241)
462 cd08241 QOR1 Quinone oxidoredu 85.1 16 0.00034 28.7 10.3 96 56-170 138-237 (323)
463 KOG1201|consensus 85.0 14 0.0003 29.9 9.5 74 57-139 37-123 (300)
464 PRK13243 glyoxylate reductase; 85.0 10 0.00022 31.2 9.2 89 57-169 149-238 (333)
465 TIGR01963 PHB_DH 3-hydroxybuty 85.0 10 0.00022 29.0 8.9 75 59-139 2-87 (255)
466 cd08279 Zn_ADH_class_III Class 84.9 18 0.00038 29.8 10.7 98 56-170 181-281 (363)
467 PRK10669 putative cation:proto 84.8 6.9 0.00015 34.5 8.6 94 59-172 418-516 (558)
468 PRK08267 short chain dehydroge 84.6 17 0.00036 28.1 10.5 74 59-140 2-87 (260)
469 cd01487 E1_ThiF_like E1_ThiF_l 84.5 3.4 7.4E-05 30.5 5.7 32 60-91 1-33 (174)
470 PRK06522 2-dehydropantoate 2-r 84.4 12 0.00025 29.9 9.2 94 60-171 2-100 (304)
471 PRK05708 2-dehydropantoate 2-r 84.3 4 8.7E-05 33.0 6.5 95 59-170 3-103 (305)
472 PRK15001 SAM-dependent 23S rib 84.1 14 0.00031 31.0 9.7 95 60-171 47-142 (378)
473 cd05213 NAD_bind_Glutamyl_tRNA 84.0 20 0.00044 29.1 10.5 93 57-173 177-274 (311)
474 PRK05597 molybdopterin biosynt 84.0 3.7 8E-05 34.1 6.2 34 58-91 28-62 (355)
475 cd08297 CAD3 Cinnamyl alcohol 83.9 15 0.00033 29.6 9.9 98 56-171 164-265 (341)
476 PF07991 IlvN: Acetohydroxy ac 83.9 4.9 0.00011 29.5 6.1 90 57-170 3-94 (165)
477 cd08240 6_hydroxyhexanoate_dh_ 83.7 14 0.00031 29.9 9.6 97 57-170 175-273 (350)
478 PRK07097 gluconate 5-dehydroge 83.7 16 0.00035 28.4 9.6 78 57-140 9-97 (265)
479 PRK09496 trkA potassium transp 83.6 23 0.0005 30.0 11.2 72 57-139 230-306 (453)
480 cd08231 MDR_TM0436_like Hypoth 83.6 16 0.00034 29.9 9.9 98 57-171 177-280 (361)
481 cd00300 LDH_like L-lactate deh 83.4 18 0.0004 29.2 9.9 104 62-173 2-117 (300)
482 PRK08945 putative oxoacyl-(acy 83.4 6.6 0.00014 30.2 7.2 78 57-139 11-101 (247)
483 PLN02928 oxidoreductase family 83.3 21 0.00045 29.6 10.3 104 57-173 158-263 (347)
484 cd05286 QOR2 Quinone oxidoredu 83.3 15 0.00033 28.8 9.4 97 56-171 135-235 (320)
485 PRK08762 molybdopterin biosynt 83.3 2.9 6.2E-05 35.0 5.3 34 57-90 134-168 (376)
486 PRK06194 hypothetical protein; 83.2 20 0.00044 28.1 10.7 77 58-140 6-93 (287)
487 PRK12826 3-ketoacyl-(acyl-carr 83.2 18 0.00039 27.5 9.9 77 58-140 6-93 (251)
488 cd01492 Aos1_SUMO Ubiquitin ac 83.2 3.7 8E-05 31.0 5.5 33 58-90 21-54 (197)
489 cd08235 iditol_2_DH_like L-idi 83.1 17 0.00037 29.3 9.8 98 56-171 164-265 (343)
490 PRK08644 thiamine biosynthesis 83.0 4.3 9.3E-05 31.1 5.8 34 57-90 27-61 (212)
491 PF03807 F420_oxidored: NADP o 82.9 10 0.00022 24.5 7.1 87 60-168 1-91 (96)
492 PF01488 Shikimate_DH: Shikima 82.8 14 0.0003 25.9 8.5 75 57-142 11-87 (135)
493 KOG1198|consensus 82.7 11 0.00023 31.3 8.4 76 56-139 156-234 (347)
494 PRK06436 glycerate dehydrogena 82.7 23 0.0005 28.8 10.2 89 57-173 121-210 (303)
495 PTZ00075 Adenosylhomocysteinas 82.6 13 0.00028 32.2 9.0 85 57-170 253-340 (476)
496 PRK00094 gpsA NAD(P)H-dependen 82.6 18 0.00039 29.2 9.7 98 60-171 3-105 (325)
497 cd08265 Zn_ADH3 Alcohol dehydr 82.5 19 0.00041 29.9 10.0 100 56-171 202-307 (384)
498 cd08289 MDR_yhfp_like Yhfp put 82.3 15 0.00033 29.3 9.2 95 58-171 147-243 (326)
499 cd08284 FDH_like_2 Glutathione 82.1 25 0.00054 28.4 10.6 98 56-171 166-266 (344)
500 COG0240 GpsA Glycerol-3-phosph 81.9 23 0.0005 29.1 9.8 101 59-171 2-105 (329)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=3.9e-33 Score=223.51 Aligned_cols=195 Identities=51% Similarity=0.958 Sum_probs=175.3
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...+++++++|++++|+ +..+|+.|++||.+|++.++++.|++++.+++++.++++++||+||||.|+++.
T Consensus 28 ~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~r 107 (308)
T PLN02366 28 GEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLR 107 (308)
T ss_pred CceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHH
Confidence 455789999999999999 777999999999999999999999999999998888889999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQAS 152 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~ 152 (197)
++++..+..+++.||+|+.+++.++++++.++.++++++++++++|+.+++... .++||+|++|.+.+..+...+++.+
T Consensus 108 ellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~e 187 (308)
T PLN02366 108 EIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKP 187 (308)
T ss_pred HHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHH
Confidence 999876567999999999999999999876543456789999999999988764 5689999999998888878888999
Q ss_pred HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhC-Cccc
Q psy4592 153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVF-PRLH 196 (197)
Q Consensus 153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f-~~v~ 196 (197)
|++.++++|+|||++++++.++|...+.++.+.++++++| +.|+
T Consensus 188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~ 232 (308)
T PLN02366 188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN 232 (308)
T ss_pred HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence 9999999999999999999999998899999999999999 4553
No 2
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=1.1e-32 Score=219.73 Aligned_cols=195 Identities=50% Similarity=0.869 Sum_probs=173.9
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...++.++++|++++|+ +..+|+.|++||..|++..+++.|++++.+++++.++++++||+||||+|.++.
T Consensus 13 ~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 13 NYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLR 92 (283)
T ss_pred ccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHH
Confidence 345678999999999999 667899999999999999999999999999998888899999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQAS 152 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~ 152 (197)
++++..+..++++||+|+++++.|+++++.+..+ +++++++++.+|+.+++....++||+|++|.+.+..+...+++.+
T Consensus 93 ~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~e 172 (283)
T PRK00811 93 EVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKE 172 (283)
T ss_pred HHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHH
Confidence 9988756679999999999999999988654322 246799999999999887666799999999988887777888899
Q ss_pred HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
+++.+++.|+|||+++++..+++...+.+..+.++++++|++|.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 99999999999999999988888878899999999999999986
No 3
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=2.7e-32 Score=213.04 Aligned_cols=195 Identities=47% Similarity=0.854 Sum_probs=175.1
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...+++++++|++++|+ +..||+.+++||..|+..++++.|++++.+++++.++++++||.||.|.|+.+.
T Consensus 13 ~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ 92 (246)
T PF01564_consen 13 GLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTAR 92 (246)
T ss_dssp TEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHH
T ss_pred CceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhh
Confidence 567899999999999999 778999999999999999999999999999999888999999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC-ceeEEEECCCCCCCCCcccccHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQAS 152 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~D~I~~~~~~~~~~~~~l~~~~ 152 (197)
++++..+..++++||+||.+++.|+++++.....+++++++++.+|+..++....+ +||+|++|.+.+..+...+++.+
T Consensus 93 ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~e 172 (246)
T PF01564_consen 93 ELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTRE 172 (246)
T ss_dssp HHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHH
T ss_pred hhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHH
Confidence 99988767899999999999999999987543334678999999999999998767 99999999999888777799999
Q ss_pred HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
|++.++++|+|||+++++..++......++.+.++++++||.|.
T Consensus 173 f~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceE
Confidence 99999999999999999998888888999999999999999774
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-31 Score=208.54 Aligned_cols=195 Identities=47% Similarity=0.826 Sum_probs=180.2
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
+.+...++++++++++|. +..||+.+++||..|++..+.+.|++|+.+.+++.++++++||.||.|.|+.++
T Consensus 13 ~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlR 92 (282)
T COG0421 13 GLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLR 92 (282)
T ss_pred cccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHH
Confidence 456778899999999998 678999999999999999999999999999999989999999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY 153 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~ 153 (197)
++++..+..+++.|||||+++++++++++.+..+..+++++++.+|+.+++.....+||+|++|.+.+.++...|++.+|
T Consensus 93 evlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eF 172 (282)
T COG0421 93 EVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEF 172 (282)
T ss_pred HHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHH
Confidence 99999888999999999999999999999876444478999999999999998777999999999999888899999999
Q ss_pred HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
++.++++|+++|+++.++.+++...+..+...+.++.+|+.+.
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~ 215 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP 215 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccc
Confidence 9999999999999999998899888888999999999998765
No 5
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.98 E-value=7.1e-31 Score=208.23 Aligned_cols=195 Identities=49% Similarity=0.900 Sum_probs=173.9
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...+++++++|++++|+ +..+|+.|++||..|+...+++.|++++.+++++.++++++||+||||+|.++.
T Consensus 9 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~ 88 (270)
T TIGR00417 9 NFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLR 88 (270)
T ss_pred CceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHH
Confidence 456789999999999999 667899999999999999999999999999988888888999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY 153 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~ 153 (197)
++++..+..+++++|+++++++.++++++.++..+..++++++.+|+.+++....++||+|++|.+.+..+...+++.++
T Consensus 89 ~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef 168 (270)
T TIGR00417 89 EVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEF 168 (270)
T ss_pred HHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHH
Confidence 98887656799999999999999999886543334567899999999998877667999999999887777777888999
Q ss_pred HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
++.+++.|+|||++++++.+++...+.++.+.++++++|++|+
T Consensus 169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~ 211 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITE 211 (270)
T ss_pred HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeE
Confidence 9999999999999999988888888999999999999999985
No 6
>PLN02823 spermine synthase
Probab=99.98 E-value=1.5e-30 Score=210.48 Aligned_cols=195 Identities=36% Similarity=0.617 Sum_probs=170.8
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...++.++++|++++|+ +..+|+.|++||..|+...+++.|++++.+.+++.++++++||.||+|.|..+.
T Consensus 40 ~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~r 119 (336)
T PLN02823 40 DLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAR 119 (336)
T ss_pred CcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHH
Confidence 345678899999999999 667899999999999999999999999999998888889999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCC--CCCcccccH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPV--GPAESLFQA 151 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~--~~~~~l~~~ 151 (197)
++++..+..++++||+|+++++.|+++++.+...+.+++++++.+|++.++....++||+|++|.+.+. ++...+++.
T Consensus 120 e~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~ 199 (336)
T PLN02823 120 EVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTK 199 (336)
T ss_pred HHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccH
Confidence 998876667999999999999999999876544456789999999999999876779999999987765 345578899
Q ss_pred HHHH-HHHhhcCCCcEEEEEcCCC--CcChhHHHHHHHHHHhhCCccc
Q psy4592 152 SYFE-LMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 152 ~~~~-~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
+|++ .+++.|+|||+++++..++ +...+.+..++++++++||+|.
T Consensus 200 eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~ 247 (336)
T PLN02823 200 SFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVV 247 (336)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEE
Confidence 9998 9999999999999998663 3346778999999999999985
No 7
>PRK00536 speE spermidine synthase; Provisional
Probab=99.97 E-value=5.6e-30 Score=200.00 Aligned_cols=179 Identities=19% Similarity=0.238 Sum_probs=159.0
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|...+++++++|++++|+ +..||+.|++| ..+.+..+++.|++|+.|.+++.+++|++||.||+|.|+.++
T Consensus 10 ~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~R 88 (262)
T PRK00536 10 YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAH 88 (262)
T ss_pred CceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHH
Confidence 355678999999999999 78899999999 555688999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY 153 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~ 153 (197)
++++.. .+++.||||+++++.++++++.+...+++|+++++.. ......++||+|++|.. ++++|
T Consensus 89 EvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~---------~~~~f 153 (262)
T PRK00536 89 QLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE---------PDIHK 153 (262)
T ss_pred HHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEEEcCC---------CChHH
Confidence 999984 4999999999999999999998776788999999862 22223478999999963 34789
Q ss_pred HHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 154 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 154 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
++.++++|+|||.++.++.++++..+.+..+.++++++|+.|+
T Consensus 154 y~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~ 196 (262)
T PRK00536 154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAM 196 (262)
T ss_pred HHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceE
Confidence 9999999999999999999999988999999999999999875
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=99.97 E-value=7.4e-29 Score=200.06 Aligned_cols=187 Identities=27% Similarity=0.372 Sum_probs=160.1
Q ss_pred eeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC
Q psy4592 8 QVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP 79 (197)
Q Consensus 8 ~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 79 (197)
.+.++|+++.|+ +..| .|++||.+|++..+++.|++++.+.++..++++++||+||||+|..+.++++..
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~ 172 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE 172 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC
Confidence 356899999999 4445 699999999999999999999999988888999999999999999999998876
Q ss_pred CCccEEEEEcCHHHHHHHHhh--cCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC-CCcccccHHHHH
Q psy4592 80 SVESAYLVEIDNRVIEVSKKY--LPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG-PAESLFQASYFE 155 (197)
Q Consensus 80 ~~~~v~~ve~~~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~-~~~~l~~~~~~~ 155 (197)
+..++++||+|+++++.|+++ ++.+. ..+++++++++++|+.+++....++||+|++|.+.+.. +...+++.+|++
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~ 252 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFA 252 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHH
Confidence 668999999999999999973 22221 23457899999999999988767799999999987654 356788899999
Q ss_pred HHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 156 LMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 156 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
.+++.|+|||+++++..+++.....+..+.++++++|+.++
T Consensus 253 ~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 253 RIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred HHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 99999999999999988887766777788999999998764
No 9
>PRK03612 spermidine synthase; Provisional
Probab=99.94 E-value=1.6e-25 Score=191.81 Aligned_cols=185 Identities=31% Similarity=0.571 Sum_probs=156.1
Q ss_pred eeeceeecCCCC--------CCC-CC--cEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHh
Q psy4592 8 QVEEPFYPSSSN--------RKE-FG--TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVL 76 (197)
Q Consensus 8 ~~~~~~~~~~~~--------~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~ 76 (197)
..++++++++|+ +.. +| ..+++||..|.+..+++.|++++.+.++..++++++|||||||+|..+.+++
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHH
Confidence 467788888888 223 35 7799999999888889999999988877777888999999999999999998
Q ss_pred cCCCCccEEEEEcCHHHHHHHHhh--cCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC-cccccHH
Q psy4592 77 KHPSVESAYLVEIDNRVIEVSKKY--LPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA-ESLFQAS 152 (197)
Q Consensus 77 ~~~~~~~v~~ve~~~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~-~~l~~~~ 152 (197)
+..+..++++||+|+++++.++++ ++.+. +.+++++++++++|+++++....++||+|++|++.+..+. .++++++
T Consensus 317 ~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~e 396 (521)
T PRK03612 317 KYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVE 396 (521)
T ss_pred hCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHH
Confidence 865447999999999999999994 33221 1245679999999999988776689999999998776543 5688899
Q ss_pred HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-C
Q psy4592 153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-F 192 (197)
Q Consensus 153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f 192 (197)
+++.++++|||||+++++..+++...+.+..+.++++++ |
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999999999999999999988888888899999999988 7
No 10
>KOG1562|consensus
Probab=99.93 E-value=3.1e-25 Score=171.78 Aligned_cols=196 Identities=52% Similarity=0.895 Sum_probs=183.0
Q ss_pred cceeeeeeeceeecCCCC--------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHH
Q psy4592 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAR 73 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~ 73 (197)
|+.++.++|.+|+.++|. +.-||+.+++||..|.++++++.|++|+.++++..+++|++||.||.|.|++.+
T Consensus 58 g~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlr 137 (337)
T KOG1562|consen 58 GQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLR 137 (337)
T ss_pred CceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCcccee
Confidence 788999999999999998 566999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCCCCCCCcccccHH
Q psy4592 74 EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSDPVGPAESLFQAS 152 (197)
Q Consensus 74 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~~~~~~~~l~~~~ 152 (197)
+..++-....+..+|++.++++..+++++.+..++.++++.+..||...++... .++||+|+.+...+.++...++...
T Consensus 138 evikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~ 217 (337)
T KOG1562|consen 138 EVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKP 217 (337)
T ss_pred eeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHH
Confidence 988876667999999999999999999998888889999999999999998875 6799999999999999888888899
Q ss_pred HHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcccC
Q psy4592 153 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLHC 197 (197)
Q Consensus 153 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~ 197 (197)
+++.+.+.||++|+.+++..+.|...+..++..+..+.+|+.+.+
T Consensus 218 ~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~y 262 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAY 262 (337)
T ss_pred HHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccce
Confidence 999999999999999999999999999999999999999997753
No 11
>PRK04457 spermidine synthase; Provisional
Probab=99.89 E-value=1.5e-21 Score=154.00 Aligned_cols=163 Identities=25% Similarity=0.360 Sum_probs=124.8
Q ss_pred CcEEEEcC-eeeee----cc--chhhHHHHH-HhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH
Q psy4592 24 GTALILDG-IIQCT----EF--DEFSYSEMI-AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE 95 (197)
Q Consensus 24 ~~~l~~~~-~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~ 95 (197)
.+.|.+++ ..|+. .+ ..+.|.+++ ..+. ..+++++|||||||+|.++..+++..+..++++||+||++++
T Consensus 27 ~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~--~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~ 104 (262)
T PRK04457 27 VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLL--FNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIA 104 (262)
T ss_pred EEEEEECCCcceeeeecCCcccccCHHHHHHHHHHh--cCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 35566665 34432 22 234565544 3332 235678999999999999999988777789999999999999
Q ss_pred HHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592 96 VSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW 175 (197)
Q Consensus 96 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~ 175 (197)
.|++++.... ..++++++++|+.+++....++||+|++|.+........+.+.+++++++++|+|||++++|...
T Consensus 105 ~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~-- 179 (262)
T PRK04457 105 VARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS-- 179 (262)
T ss_pred HHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC--
Confidence 9999986421 24689999999999887656789999999865545555677899999999999999999997533
Q ss_pred cChhHHHHHHHHHHhhCCc
Q psy4592 176 YSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 176 ~~~~~~~~~~~~~~~~f~~ 194 (197)
..+.+...++.++++|++
T Consensus 180 -~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 180 -RDKRYDRYLERLESSFEG 197 (262)
T ss_pred -CchhHHHHHHHHHHhcCC
Confidence 345567788899999986
No 12
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.87 E-value=2.1e-21 Score=154.55 Aligned_cols=182 Identities=34% Similarity=0.543 Sum_probs=153.1
Q ss_pred eceeecCCCC-------CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCc
Q psy4592 10 EEPFYPSSSN-------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE 82 (197)
Q Consensus 10 ~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~ 82 (197)
|+|++...|+ ++.....|++||-.|.+.++++.|++.+.+.+.-..+...+||.+|.|.|-..+++.+.....
T Consensus 235 deIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~ 314 (508)
T COG4262 235 DEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVE 314 (508)
T ss_pred CceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcc
Confidence 6789999988 333344589999999999999999998887766555677899999999999999999987678
Q ss_pred cEEEEEcCHHHHHHHHhh--cCCC-CCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCC-CcccccHHHHHHHH
Q psy4592 83 SAYLVEIDNRVIEVSKKY--LPGM-AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGP-AESLFQASYFELMS 158 (197)
Q Consensus 83 ~v~~ve~~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~-~~~l~~~~~~~~~~ 158 (197)
+|+-||+||+|++.++++ +... .+.+.+++++++..|+.+|++...+.||+||.|.++|..+ -.++++.+|+..++
T Consensus 315 qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~ 394 (508)
T COG4262 315 QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLS 394 (508)
T ss_pred eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence 999999999999999954 2222 1335678999999999999998888999999999987753 35688999999999
Q ss_pred hhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 159 RALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 159 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
+.|+++|.++++..++....+.+=.+.+++++.
T Consensus 395 ~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A 427 (508)
T COG4262 395 RHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA 427 (508)
T ss_pred HhcCcCceEEEecCCCccCCceeeeehhHHHhC
Confidence 999999999999999888777777777777765
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=1.3e-18 Score=134.14 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=93.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||||.++..+++..+..+++++|+|++|++.+++..... ...+++++.+||.+ ++.++++||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhh-CCCCCCccCEEE
Confidence 4678999999999999999998777789999999999999999987653 22349999999977 678889999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+....+..++. ++.|++++|+|||||++++...+
T Consensus 125 ~~fglrnv~d~----~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 125 ISFGLRNVTDI----DKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred eeehhhcCCCH----HHHHHHHHHhhcCCeEEEEEEcC
Confidence 98877776665 88999999999999988876533
No 14
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=131.36 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=133.3
Q ss_pred EEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC
Q psy4592 26 ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA 105 (197)
Q Consensus 26 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~ 105 (197)
.+-+||..|........+.+.+..+.....+++.+|||.|.|.|+.+.+.++++. .+|..||.||+++++|+-| +..
T Consensus 103 TiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lN-PwS- 179 (287)
T COG2521 103 TIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLN-PWS- 179 (287)
T ss_pred eEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccC-CCC-
Confidence 4678888887666667777777777766567789999999999999999988853 5999999999999999876 322
Q ss_pred CCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc---ChhHH
Q psy4592 106 VGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY---SLDCV 181 (197)
Q Consensus 106 ~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~---~~~~~ 181 (197)
.++-...++++.+|+.+.++. .+++||+|+.|||-.... ..|++++|+++++|+|||||.++-+++.|.. ..+..
T Consensus 180 r~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~A-geLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~ 258 (287)
T COG2521 180 RELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLA-GELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLP 258 (287)
T ss_pred ccccccccEEecccHHHHHhcCCccccceEeeCCCccchh-hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChh
Confidence 222335799999999999887 467899999999854432 3789999999999999999999999987753 35677
Q ss_pred HHHHHHHHhh-CCcc
Q psy4592 182 GNTLQHCASV-FPRL 195 (197)
Q Consensus 182 ~~~~~~~~~~-f~~v 195 (197)
+.+.+.++++ |..|
T Consensus 259 ~gVa~RLr~vGF~~v 273 (287)
T COG2521 259 KGVAERLRRVGFEVV 273 (287)
T ss_pred HHHHHHHHhcCceee
Confidence 7888888887 6644
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=5.6e-19 Score=121.94 Aligned_cols=109 Identities=21% Similarity=0.301 Sum_probs=84.5
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+.+|||||||+|.++.++++..+..+++++|++|++++.|++++... . ..++++++++|+ .......++||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--G-LSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--T-TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 46999999999999999998545589999999999999999988321 1 357999999998 3333345689999998
Q ss_pred C-CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 S-SDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~-~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
. ..+..... -...++++.+++.|+|||+++++.
T Consensus 78 ~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 33222111 112678999999999999999864
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.76 E-value=4.4e-17 Score=125.80 Aligned_cols=127 Identities=19% Similarity=0.271 Sum_probs=102.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I 134 (197)
+...+|||+|||+|.++..++++.+..++++||+++++.+.|+++.... .+ .++++++++|+.++.+.. ..+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l-~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PL-EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cc-hhceeEehhhHHHhhhcccccccCEE
Confidence 3468999999999999999998866689999999999999999997752 22 369999999999987764 3469999
Q ss_pred EECCCCCCCCCc--------------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 135 ITDSSDPVGPAE--------------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 135 ~~~~~~~~~~~~--------------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
++|||....... .+.-+++++.+.++|||||.+.+. .+.+.+.+++..+++
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-----~r~erl~ei~~~l~~ 184 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-----HRPERLAEIIELLKS 184 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-----ecHHHHHHHHHHHHh
Confidence 999996543221 011267999999999999999974 346778888887776
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.76 E-value=1.5e-18 Score=128.71 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=86.8
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++... .-.++++..+|..+.++ .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n----~~~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN----GLENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT----TCTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc----Ccccccccccccccccc--ccceeEEEE
Confidence 557999999999999999999887778999999999999999998753 12239999999765443 479999999
Q ss_pred CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|||.+...... ....++++++.+.|||||.+++....
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 99976664311 12378999999999999999776544
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1e-17 Score=129.97 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||||.++..+++. .+..+++++|++++|++.|++..... ...+++++++|+.+ ++..+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----~~~~i~~v~~da~~-lp~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----GLQNIEFVQGDAED-LPFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT----T--SEEEEE-BTTB---S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh----CCCCeeEEEcCHHH-hcCCCCceeEE
Confidence 56789999999999999998875 44579999999999999999887542 23489999999987 56667899999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 188 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 188 (197)
++....+..++. ...+++++|+|||||.+++...+ .+....++.++..+
T Consensus 121 ~~~fglrn~~d~----~~~l~E~~RVLkPGG~l~ile~~-~p~~~~~~~~~~~y 169 (233)
T PF01209_consen 121 TCSFGLRNFPDR----ERALREMYRVLKPGGRLVILEFS-KPRNPLLRALYKFY 169 (233)
T ss_dssp EEES-GGG-SSH----HHHHHHHHHHEEEEEEEEEEEEE-B-SSHHHHHHHHH-
T ss_pred EHHhhHHhhCCH----HHHHHHHHHHcCCCeEEEEeecc-CCCCchhhceeeee
Confidence 998866655554 78999999999999998875422 12234555555443
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.73 E-value=1.9e-16 Score=120.58 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=94.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I 134 (197)
++.+|||+|||+|.++..+++..+..+++++|+++++++.+++++... ..++++++++|+.+.++ ...++||.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----CCCCEEEEecCHHHHHHHHcCccccceE
Confidence 557999999999999999887766679999999999999999887542 22579999999933344 235789999
Q ss_pred EECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 135 ITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
+++.+.++... .....+.+++++.++|||||.+++.+.. ......+.+.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence 99876654321 1122378999999999999999997544 3455555555544
No 20
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.73 E-value=2.2e-16 Score=119.57 Aligned_cols=126 Identities=14% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I 134 (197)
...++||||||+|.++..+++..+...++++|+++.+++.|+++.... ...+++++++|+.+.+.. ..+++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~----~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL----GLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh----CCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 345999999999999999998877789999999999999998876542 224899999999886543 24589999
Q ss_pred EECCCCCCCCC----cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 135 ITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
+++.+.++... ..+..+++++.+.++|||||.+++.+.. ......+.+.+.+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~~~~~~~ 147 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDMLKVLSE 147 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 99998877432 2344578999999999999999987644 2334444444443
No 21
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.72 E-value=3e-17 Score=122.61 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=98.2
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF 123 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 123 (197)
.+++.+++. ..+.+|.|+|||+|..+..+..+.+...++|+|.|++|++.|++.. +++++..+|++++
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 345555543 5678999999999999999999999999999999999999998764 5789999999886
Q ss_pred HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW 175 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~ 175 (197)
-+. .+.|+|++|..++|.++. .++|..+...|.|||++.+++...+
T Consensus 88 ~p~--~~~dllfaNAvlqWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 88 KPE--QPTDLLFANAVLQWLPDH----PELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CCC--Cccchhhhhhhhhhcccc----HHHHHHHHHhhCCCceEEEECCCcc
Confidence 543 679999999999999886 7899999999999999999985543
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=1.9e-17 Score=120.64 Aligned_cols=108 Identities=23% Similarity=0.326 Sum_probs=87.7
Q ss_pred CCCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I 134 (197)
+..+|||+|||+|.++..++ +..+..+++++|+++++++.|++.+... ..++++++++|+.+ ++.. .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----~~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----GLDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----TSTTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----cccccceEEeehhc-cccccCCCeeEE
Confidence 46799999999999999999 5566689999999999999999976542 23489999999988 5521 2789999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+++.+.++..+. ..+++++.+.|+++|.+++....
T Consensus 78 ~~~~~l~~~~~~----~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDP----EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHH----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence 999877555544 67999999999999999986533
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.70 E-value=8.3e-17 Score=132.35 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=88.5
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
..+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++...... ...++++..+|+.+.. ..++||+|++|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence 35999999999999999998877789999999999999999987542100 1237899999975533 23589999999
Q ss_pred CCCCCCCCc-ccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 138 SSDPVGPAE-SLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 138 ~~~~~~~~~-~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
||+|..... .-...++++.++++|+|||.+++..+..
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 998765311 0112578999999999999999986554
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.69 E-value=1.2e-16 Score=111.04 Aligned_cols=109 Identities=28% Similarity=0.433 Sum_probs=85.1
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEEC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITD 137 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~ 137 (197)
.+|||+|||+|.++..+++.. ..+++++|++|..++.++.+++.. + ...+++++++|+.+.... ..++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--G-LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--T-TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--c-CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999988876 589999999999999999988753 1 135799999999887633 46899999999
Q ss_pred CCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 SSDPVGP----AESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|..... ...-....+++++.++|+|||.+++.+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9875321 111123689999999999999998864
No 25
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.69 E-value=2.1e-16 Score=129.04 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=91.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++... ....+++.+|..+. ..++||+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l~~~~~~~D~~~~---~~~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GLEGEVFASNVFSD---IKGRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEcccccc---cCCCccEEEE
Confidence 345899999999999999998777679999999999999999987652 22456777886542 2468999999
Q ss_pred CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHH
Q psy4592 137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 182 (197)
Q Consensus 137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 182 (197)
|+|+|...... -....+++++.+.|||||.+++..+....+.+.++
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence 99988753321 11378999999999999999998876555444444
No 26
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.4e-16 Score=124.16 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=94.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...+|||+|||.|.++..+++..|..+++.+|+|...++.|++++..+ ...+..+..+|..+.. .++||+|++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N----~~~~~~v~~s~~~~~v---~~kfd~Iis 230 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN----GVENTEVWASNLYEPV---EGKFDLIIS 230 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc----CCCccEEEEecccccc---cccccEEEe
Confidence 345999999999999999999988899999999999999999998752 2223367778765433 248999999
Q ss_pred CCCCCCCCCcc-cccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592 137 DSSDPVGPAES-LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 185 (197)
Q Consensus 137 ~~~~~~~~~~~-l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 185 (197)
|||+|.+..-. -...+++..+.+.|++||.|++..+........+++++
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 99998874321 11258999999999999999998875444444444443
No 27
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=5.1e-17 Score=108.31 Aligned_cols=95 Identities=23% Similarity=0.334 Sum_probs=78.3
Q ss_pred EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCC
Q psy4592 62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~ 141 (197)
||+|||+|..+..+.+. +..+++++|+++++++.+++.... .++++..+|+.+. +.++++||+|++....+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999988 558999999999999999998753 4567999998775 66678999999988776
Q ss_pred CCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 142 VGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+..+. ..+++++.|+|||||++++
T Consensus 72 ~~~~~----~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDP----EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHH----HHHHHHHHHHEEEEEEEEE
T ss_pred eccCH----HHHHHHHHHHcCcCeEEeC
Confidence 66433 7899999999999999985
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=2.2e-16 Score=124.41 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=84.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.+|||+|||+|.++..+++..+..+++++|+++.|++.|++. +++++++|+.++. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence 566899999999999999998876667999999999999998652 4678899987652 246899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++...++.++. ..++++++++|||||.+++..
T Consensus 95 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPEH----ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCCH----HHHHHHHHHhCCCCcEEEEEc
Confidence 99988887664 789999999999999999875
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=4e-16 Score=122.98 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=87.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.+|||+|||+|.++..+++.. .+++++|+++++++.|+++.... + ..++++++++|+.+..+...++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g-~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--G-VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--C-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 456799999999999999998764 69999999999999999887542 1 135789999999876444467899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+....++..++ ..+++++.++|||||.+++..
T Consensus 118 ~~~vl~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP----KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 98877666554 678999999999999998754
No 30
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=3.2e-16 Score=123.88 Aligned_cols=110 Identities=17% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+++.+|||+|||+|.++..+++. .+..+++++|++++|++.|+++.+..... ..++++++++|+.+ ++..+++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~-lp~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATD-LPFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEccccc-CCCCCCCEeEE
Confidence 45679999999999998888765 34469999999999999998764311000 23579999999876 35556789999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++....++.+++ ..++++++++|||||.+++..
T Consensus 150 ~~~~~l~~~~d~----~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRNVVDR----LKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEecccccCCCH----HHHHHHHHHHcCcCcEEEEEE
Confidence 998877776654 789999999999999988764
No 31
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.68 E-value=1.2e-15 Score=112.50 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..++.+++|||||||+++.+++...+..++++||-+++.++..++|..++ .-+|++++.+|+.+.++... ++|.|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L~~~~-~~dai 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEALPDLP-SPDAI 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhhcCCC-CCCEE
Confidence 45667999999999999999998788899999999999999999998775 35799999999999887643 89999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
|.... . . -++.++.+...|||||+++.|... .+.+..+++.+++.
T Consensus 107 FIGGg----~--~--i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~ 151 (187)
T COG2242 107 FIGGG----G--N--IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL 151 (187)
T ss_pred EECCC----C--C--HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence 98773 1 1 178999999999999999998755 57777777777765
No 32
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.68 E-value=3.2e-16 Score=119.41 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=89.5
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||.|.++..+++.+ ..|+++|+++++++.|+..... +.-.+++.+..+.+.... .++||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-----~gv~i~y~~~~~edl~~~-~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-----SGVNIDYRQATVEDLASA-GGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-----ccccccchhhhHHHHHhc-CCCccEEEE
Confidence 56799999999999999999886 8999999999999999988664 334567888888775543 489999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
.-...+-+++ +.+++.+.+++||||.+++.+.+.
T Consensus 131 mEVlEHv~dp----~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 131 MEVLEHVPDP----ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred hhHHHccCCH----HHHHHHHHHHcCCCcEEEEecccc
Confidence 8877776676 679999999999999999987653
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=4.4e-16 Score=122.18 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=84.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhc--CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLK--HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
+++.+|||+|||+|..+..+++ ..+..+++++|+++.|++.|++++...+ ...+++++++|+.+. + .+.+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~-~--~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI-A--IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhC-C--CCCCCE
Confidence 4567999999999999888776 3456899999999999999999875421 234799999998653 2 245999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+++...++.++.. ...++++++++|||||.+++..
T Consensus 129 vv~~~~l~~l~~~~--~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSE--RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence 99988766654322 2679999999999999999864
No 34
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.68 E-value=1.7e-15 Score=125.83 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=96.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D 132 (197)
.++++|||+|||+|+++..++.. +..+++++|+++.+++.|++++... +++..+++++++|+.+++.. ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N--gl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35679999999999998876654 3469999999999999999998752 22224799999999998754 246899
Q ss_pred EEEECCCCCCCCCcccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592 133 VIITDSSDPVGPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 185 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 185 (197)
+|++|||........+. -.++++.+.++|+|||.+++.++++....+.+.+++
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence 99999986443221111 145667789999999999998888777666666555
No 35
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=1.3e-15 Score=118.24 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=86.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+++.+|||+|||+|.++..+++. .+..+++++|+++++++.+++++... ..++++++++|+.+. +...++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMEL-PFDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcC-CCCCCCccEE
Confidence 45679999999999999988865 34579999999999999999887542 235799999998763 3345789999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++...++.++. .++++++.++|+|||.+++..
T Consensus 119 ~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRNVPDY----MQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEecccccCCCH----HHHHHHHHHHcCcCeEEEEEE
Confidence 998776665544 679999999999999998754
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=9.2e-16 Score=114.82 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=81.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..++...+..+++++|+++++++.++++.... ..++++++++|+.+. . ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----~~~~i~~i~~d~~~~-~-~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----GLNNVEIVNGRAEDF-Q-HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----CCCCeEEEecchhhc-c-ccCCccEEEe
Confidence 367999999999999988876666679999999999999998876542 224699999999874 2 2468999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+. . .+. +.+++.+.++|+|||.+++..
T Consensus 116 ~~-~---~~~----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 116 RA-L---ASL----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hh-h---hCH----HHHHHHHHHhcCCCCEEEEEc
Confidence 76 1 111 568899999999999999864
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=6e-16 Score=122.07 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=86.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++ ++++++.+|+.++. ..++||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4567999999999999999887766689999999999999998864 35789999987643 246899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++...++.++. ..+++++.++|||||.+++...
T Consensus 99 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPDH----LELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCCH----HHHHHHHHHhcCCCcEEEEECC
Confidence 99988877654 6899999999999999999753
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.67 E-value=6.2e-16 Score=108.29 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+..+|||+|||+|.++..+++..+..+++++|+++.+++.++++.... ..++++++.+|+.+.+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhhcCCCCEEE
Confidence 3456999999999999999988766689999999999999999886542 234788998987653333346899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+..... . ..++++.+.+.|||||.+++..
T Consensus 94 ~~~~~~-----~--~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-----L--LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-----h--HHHHHHHHHHHcCCCCEEEEEe
Confidence 976321 1 1579999999999999999865
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.67 E-value=7.1e-16 Score=115.81 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=84.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++.+|||+|||+|..+..+++..+..+++++|+++++++.|+++.... ..++++++++|+.+. .. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~----~l~~i~~~~~d~~~~-~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL----GLKNVTVVHGRAEEF-GQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc----CCCCEEEEeccHhhC-CC-CCCccEEE
Confidence 3468999999999999998887556689999999999999999987653 223599999998774 33 56899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++.. .+. +.+++.+++.|||||.+++....
T Consensus 118 ~~~~----~~~----~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV----ASL----SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc----cCH----HHHHHHHHHhcCCCeEEEEEeCC
Confidence 9752 111 67999999999999999987533
No 40
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.66 E-value=3.6e-15 Score=123.20 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=83.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.+|||+|||+|.++..+++..+..+++++|+|+++++.|+++.... +.+++++++|+.+......++||+|++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-----GARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEcchhccccccCCCccEEEE
Confidence 346999999999999998887666689999999999999999997652 347999999976532112357999999
Q ss_pred CCCCCCCCCc-------------cc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAE-------------SL--------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~-------------~l--------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|||....... .+ .-..+++.+.+.|+|||.+++..+.
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 9985221100 01 1136777888999999999886533
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=9.6e-16 Score=120.42 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=87.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++++|||||||+|+++..+++..+ .+|+++++|+++.+.+++.+... ++. .++++...|.+++ .++||.|+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~--gl~-~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAAR--GLE-DNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHc--CCC-cccEEEecccccc----ccccceee
Confidence 6789999999999999999998874 79999999999999999977653 222 4899999996654 34599999
Q ss_pred ECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+-... |.+.... +.||+.+++.|+|||.+++.+..
T Consensus 143 SvgmfEhvg~~~~---~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 143 SVGMFEHVGKENY---DDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ehhhHHHhCcccH---HHHHHHHHhhcCCCceEEEEEec
Confidence 96654 4454332 88999999999999999998744
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.66 E-value=4.9e-15 Score=116.17 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=85.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.... ..++++++++|+.+.. ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----GLDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhccC--cCCceeEEE
Confidence 3456999999999999999998766679999999999999999987542 2246999999987633 247899999
Q ss_pred ECCCCCCCCCcc-----cc-----------------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAES-----LF-----------------QASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~-----l~-----------------~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+|........ .. -..+++.+.+.|+|||.+++..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999864321110 00 1357889999999999999864
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=7.2e-16 Score=126.17 Aligned_cols=107 Identities=18% Similarity=0.320 Sum_probs=86.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||||||+|.++..+++..+ .++++||+++.+++.++++.... + ..++++++++|+.+ ++..+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~--g-~~~~v~~~~~D~~~-~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQ--G-LSDKVSFQVADALN-QPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEEcCccc-CCCCCCCccEEE
Confidence 4567999999999999999887653 79999999999999998875431 1 23579999999876 344467999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+....++.++. ..++++++++|||||.+++..
T Consensus 192 s~~~~~h~~d~----~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPDK----RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 98776665554 689999999999999999865
No 44
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.66 E-value=3.8e-15 Score=122.28 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~ 135 (197)
....+||||||+|.++..+++..+...++|+|+++.+++.+.++.... +..++.++.+|+...+.. ..+++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~----gL~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL----NLKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 445999999999999999998888889999999999999988876542 235799999999876433 467999999
Q ss_pred ECCCCCCCC--CcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 136 TDSSDPVGP--AESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 136 ~~~~~~~~~--~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
++.+.+|.. +.++..+.+++.++++|+|||.+.+.+...
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 999988852 234556899999999999999999987653
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=2.4e-15 Score=113.25 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=88.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.... ...+++++.+|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----~~~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----GCGNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCeEEEecCchhhc---CcCCCEEE
Confidence 4567999999999999999888766689999999999999999887543 2246899999974322 35799999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
++.... . ...+++.+.+.|+|||++++.... .+...++.+.+++.
T Consensus 103 ~~~~~~---~----~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~~l~~~ 147 (187)
T PRK08287 103 IGGSGG---N----LTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALAHLEKC 147 (187)
T ss_pred ECCCcc---C----HHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHHHHHHC
Confidence 876421 1 166889999999999999885322 23445555555543
No 46
>KOG1540|consensus
Probab=99.65 E-value=3.6e-15 Score=114.08 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=87.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCC------ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSV------ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~------~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 129 (197)
.+..++||++||||.++..+++..+. .+|+++||+|.|++.++++..+. .-...+++.++.+||++ ++.+++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~-LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAED-LPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCccc-CCCCCC
Confidence 45689999999999999998876443 79999999999999999886331 11234569999999987 567789
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+||+.++..-....++. ++.+++++|+|||||+|.+-.
T Consensus 177 s~D~yTiafGIRN~th~----~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHI----QKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCCCH----HHHHHHHHHhcCCCcEEEEEE
Confidence 99999987654444444 789999999999999887643
No 47
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.64 E-value=5.7e-15 Score=112.16 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=93.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|.++..+++. .+..+++++|+++.+++.++++.... ++ ..+++++.+|+.+.++...++||+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~-~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GV-LNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CC-CCCeEEEEechhhhHhhcCCCCCEE
Confidence 46679999999999999988764 34469999999999999999887642 11 3578999999987666545689999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
+++... .. ...+++.+.++|+|||++++... ..+.+..+...+++.
T Consensus 116 ~~~~~~---~~----~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 116 FIGGGS---EK----LKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALENI 161 (198)
T ss_pred EECCCc---cc----HHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHHc
Confidence 986521 11 16789999999999999998543 346667777777554
No 48
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=2.1e-15 Score=121.96 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=86.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.+|||||||+|.++..+++.. .++++||+++++++.|+++.... + ...+++++++|+.+. +...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~--~-~~~~i~~~~~dae~l-~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD--P-VTSTIEYLCTTAEKL-ADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--C-cccceeEEecCHHHh-hhccCCCCEEEE
Confidence 34699999999999998887653 69999999999999999875431 1 124799999998774 334578999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
....++..++ ..+++++.++|||||.+++....
T Consensus 205 ~~vLeHv~d~----~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 205 LEVIEHVANP----AEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred hhHHHhcCCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence 8777666555 78999999999999999987643
No 49
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=3.3e-15 Score=118.20 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=82.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||||||+|..+..+++..+ .+++++|+++++++.|+++... .+++.+.++|+.+ .+...++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~-~~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILK-KDFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCccc-CCCCCCCeEEEE
Confidence 5667999999999999888876543 6999999999999999987653 3579999999764 233457899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+....++.+... ...++++++++|||||.+++..
T Consensus 123 s~~~l~h~~~~d--~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHLSYAD--KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhCCHHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence 965433332111 2679999999999999999864
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=5.8e-15 Score=110.36 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+.+..+ +++++|+++++++.+++++.. ...+++++.+|+.+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL-----NNVGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEccccccc---CCcccEEE
Confidence 3457899999999999999887753 899999999999999998764 2246888999975532 35899999
Q ss_pred ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++|.+..... ......+++++.++|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 99986543211 0012568999999999999998865
No 51
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=7.9e-15 Score=115.26 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=82.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+.+.. .+++++|+++++++.++++.. ...++++|+.+ ++...++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~-~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIES-LPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCccc-CcCCCCcEEEEE
Confidence 345799999999999988887653 799999999999999988653 24578889865 344457899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++.+.++.++. ..++.++.++|+|||.+++...
T Consensus 109 s~~~l~~~~d~----~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 109 SNLAVQWCGNL----STALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ECchhhhcCCH----HHHHHHHHHHcCCCeEEEEEeC
Confidence 99888776654 7899999999999999998753
No 52
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=119.21 Aligned_cols=126 Identities=23% Similarity=0.327 Sum_probs=103.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~ 133 (197)
.+++||++.|.||+++.+++..+ ..++|.||+|...++.|++|+.. +++...++.++++|+.+++... +.+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~L--Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAEL--NGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHh--cCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 48899999999999999988775 35999999999999999999876 4555678999999999999864 459999
Q ss_pred EEECCCCCCCCCccccc-----HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592 134 IITDSSDPVGPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 185 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~-----~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 185 (197)
|++|||.........++ ..++..+.++|+|||.+++.+++.....+.+.+++
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i 350 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII 350 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHH
Confidence 99999975543322221 45778899999999999999988877777666655
No 53
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=1.5e-14 Score=117.48 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=83.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..+++..+..+++++|+++++++.|+++.. ..+++++.+|+.+ ++...++||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~-lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAED-LPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHh-CCCCCCceeEEEE
Confidence 4579999999999998888776555799999999999999998753 2468899999876 3444578999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+...+..++. +..+++++++|||||.+++.
T Consensus 185 ~~~L~~~~d~----~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 185 AGSIEYWPDP----QRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred cChhhhCCCH----HHHHHHHHHhcCCCcEEEEE
Confidence 8877666554 67899999999999998875
No 54
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=3.3e-15 Score=113.39 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.+|||+|||+|..+..+++.. .+++++|+++++++.+++..... ...++++.++|+.+. +. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~-~~-~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE----NLDNLHTAVVDLNNL-TF-DGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc----CCCcceEEecChhhC-Cc-CCCcCEEEE
Confidence 45799999999999999998763 69999999999999998876542 124588888997653 22 467999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
....++.+... ...+++++.++|+|||++++
T Consensus 102 ~~~~~~~~~~~--~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFLEAKT--IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhCCHHH--HHHHHHHHHHHcCCCcEEEE
Confidence 88766543221 26899999999999998654
No 55
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=1.7e-14 Score=112.61 Aligned_cols=108 Identities=11% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.++.+|||+|||+|..+..+++. .+..+++++|++++|++.|++++.... ...+++++++|+.+. + .+++|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~-~--~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV-E--IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC-C--CCCCCE
Confidence 45569999999999999888764 356899999999999999998865321 234789999998653 2 246899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|++....++.++.. ...++++++++|+|||.+++..
T Consensus 126 v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred EeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEee
Confidence 99888776654322 2679999999999999999864
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.61 E-value=6.2e-16 Score=105.00 Aligned_cols=97 Identities=24% Similarity=0.386 Sum_probs=73.2
Q ss_pred EEEEeCCchHhHHHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 61 VLIVGGGDGGVAREVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
|||+|||+|..+..+.+.. +..+++++|+++++++.++++... ...+++++++|+.++ +...++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999988653 337999999999999999998754 234899999999884 4456799999994
Q ss_pred -CCCCCCCCcccccHHHHHHHHhhcCCCc
Q psy4592 138 -SSDPVGPAESLFQASYFELMSRALRPGG 165 (197)
Q Consensus 138 -~~~~~~~~~~l~~~~~~~~~~~~LkpgG 165 (197)
...++..+.. ...+++++.++|||||
T Consensus 75 ~~~~~~~~~~~--~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEE--LEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHH--HHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHH--HHHHHHHHHHHhCCCC
Confidence 4243333322 2789999999999998
No 57
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=4.3e-14 Score=112.41 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=84.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++... ...+++++.+|+.+... .++||+|+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv 180 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV 180 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence 3557999999999999999988777789999999999999999987611 23579999999754322 36899999
Q ss_pred ECCCCCCCCC--------------cccc--------cHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPA--------------ESLF--------QASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~--------------~~l~--------~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+|...... ..+. -..+++++.+.|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9998532110 0010 1457888889999999999965
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=5.7e-15 Score=111.92 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=78.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++..... +-++++...|+... +. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~-~~-~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAA-AL-NEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhc-cc-cCCCCEEEE
Confidence 45799999999999999998763 69999999999999998876431 22367777776432 22 357999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
....++.+... ...++++++++|+|||++++.
T Consensus 101 ~~~~~~~~~~~--~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 101 TVVFMFLQAGR--VPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ecccccCCHHH--HHHHHHHHHHHhCCCcEEEEE
Confidence 88766553321 267999999999999985544
No 59
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=8.4e-15 Score=117.03 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=86.0
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..+++..+..+++++|+|+.+++.|+++.... ++ ..+++++++|+.+.++ .++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~-~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GL-EDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEECchhhccC--CCCccEEEE
Confidence 456999999999999999998766689999999999999999987642 11 2479999999865442 357999999
Q ss_pred CCCCCCCCC-----------c--cc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPA-----------E--SL--------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~-----------~--~l--------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|||...... + .+ ....+++.+.+.|+|||++++..+.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 998532110 0 00 1146788999999999999997653
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.60 E-value=3.7e-14 Score=113.43 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCcEEEEcCeeeeeccchhh-HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592 22 EFGTALILDGIIQCTEFDEFS-YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY 100 (197)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~ 100 (197)
.+|..+.++..+-...+.... ....+..+. ......+|||+|||+|.++..++...+..+++++|+++++++.|+++
T Consensus 80 f~g~~f~v~~~vliPr~ete~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 80 FYGLEFFVNEHVLIPRPETEELVEKALASLI--SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EcCeEEEECCCCcCCCCccHHHHHHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 356666666444333332222 222222221 11222699999999999999999877768999999999999999998
Q ss_pred cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC-------------ccc--------ccHHHHHHHHh
Q psy4592 101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA-------------ESL--------FQASYFELMSR 159 (197)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~-------------~~l--------~~~~~~~~~~~ 159 (197)
.... ++ ..+++++.+|+.+.++ ..+||+|++|||...... ..+ ....+++++.+
T Consensus 158 ~~~~--~~-~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~ 232 (284)
T TIGR00536 158 AEKN--QL-EHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPD 232 (284)
T ss_pred HHHc--CC-CCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7642 11 2359999999765332 247999999987522110 000 12468889999
Q ss_pred hcCCCcEEEEEcCC
Q psy4592 160 ALRPGGIVCSQAGT 173 (197)
Q Consensus 160 ~LkpgG~l~~~~~~ 173 (197)
.|+|||++++..+.
T Consensus 233 ~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 233 YLKPNGFLVCEIGN 246 (284)
T ss_pred hccCCCEEEEEECc
Confidence 99999999997644
No 61
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.60 E-value=1.3e-14 Score=112.63 Aligned_cols=103 Identities=21% Similarity=0.345 Sum_probs=86.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.+|||+|||+|.++..+++..+..+++++|+++.+++.+++... +++.++.+|+.+. +...++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-~~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKL-PLEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhC-CCCCCceeEEE
Confidence 34579999999999999999887776789999999999999988753 3688999998763 33457899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++...++..+. ..+++++.++|+|||.+++..
T Consensus 104 ~~~~l~~~~~~----~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDDL----SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccCH----HHHHHHHHHHcCCCcEEEEEe
Confidence 99887776554 679999999999999999865
No 62
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=5e-15 Score=117.39 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD 132 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 132 (197)
+..+++.+|||||||.|+++..+++..+ +++++|.+|++..+.+++.+... ++ ..++++..+|.++.. .+||
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~--gl-~~~v~v~~~D~~~~~----~~fD 129 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREA--GL-EDRVEVRLQDYRDLP----GKFD 129 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TS-SSTEEEEES-GGG-------S-S
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEEeeccccC----CCCC
Confidence 3346778999999999999999998864 79999999999999999887653 22 358999999977632 3899
Q ss_pred EEEECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 133 VIITDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 133 ~I~~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.|++-... |.+... -+.+++++.+.|||||.+++....
T Consensus 130 ~IvSi~~~Ehvg~~~---~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKN---YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEEESEGGGTCGGG---HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEEechhhcChhH---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 99996544 443222 278999999999999999987543
No 63
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=1.1e-16 Score=108.15 Aligned_cols=98 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECCCC
Q psy4592 62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDSSD 140 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~~~ 140 (197)
||||||+|.++..+....+..+++++|+|+.+++.+++++... ...+......+..+..... .++||+|++....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL----GNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC----T---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999888767789999999999998888776542 1223333333322322222 2589999999888
Q ss_pred CCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592 141 PVGPAESLFQASYFELMSRALRPGGIV 167 (197)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~LkpgG~l 167 (197)
++.++. ..++++++++|||||+|
T Consensus 77 ~~l~~~----~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDI----EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-H----HHHHHHHTTT-TSS-EE
T ss_pred hhhhhH----HHHHHHHHHHcCCCCCC
Confidence 777444 78999999999999986
No 64
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=115.30 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=85.2
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++... ++ ..+++++++|+.+.++ .++||+|++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--GL-EDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CC-CCcEEEEECchhhhCC--CCCccEEEECC
Confidence 6899999999999999988777789999999999999999997642 11 2469999999866443 35799999998
Q ss_pred CCCCC-------------CCccc--------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 139 SDPVG-------------PAESL--------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 139 ~~~~~-------------~~~~l--------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|.... +...+ ....+++.+.+.|+|||.+++..+.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 74221 10000 1146789999999999999997643
No 65
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.59 E-value=6e-14 Score=106.28 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=81.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++.+++.... .+++++|++++.++.+++++... +..+++++++|+.++++....+||+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~----~~~~v~~~~~D~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL----KAGNARVVNTNALSFLAQPGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh----CCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence 456999999999999987655543 69999999999999999998653 2247999999998877543457999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHh--hcCCCcEEEEEcC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSR--ALRPGGIVCSQAG 172 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~--~LkpgG~l~~~~~ 172 (197)
|||..... ..+.++.+.+ .|+|+|.+++...
T Consensus 128 DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 128 DPPFRKGL-----LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99854331 1455565554 3899999998753
No 66
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.58 E-value=1e-13 Score=108.98 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=87.8
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~ 136 (197)
+.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++... +.+++++|+.+.++. ..++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEE
Confidence 45899999999999999887666579999999999999999997642 247899998765542 1357999999
Q ss_pred CCCCCCCC--------------Cccc--------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 137 DSSDPVGP--------------AESL--------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 137 ~~~~~~~~--------------~~~l--------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
|||..-.. ...+ ....+++.+.++|+|||.+++.... +....+...+++
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-----~~~~~v~~~l~~ 230 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-----RQAPLAVEAFAR 230 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----chHHHHHHHHHH
Confidence 99853110 0001 0146888889999999999986533 233445555543
No 67
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.58 E-value=5.9e-14 Score=106.44 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=82.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.+|||+|||+|.++.++++..+..+++++|+++++++.+++++... ...+++++.+|+.+.+......+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----GVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 4567999999999999998886655579999999999999999987542 224799999998765544334568887
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++.. .. ...+++++.++|+|||.+++...+
T Consensus 115 ~~~~----~~----~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEGG----RP----IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EECC----cC----HHHHHHHHHHhcCCCeEEEEEeec
Confidence 7542 11 167899999999999999997643
No 68
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=1.7e-14 Score=114.63 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=84.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+.+.+|||+|||+|..+..+++. .+..+++++|+++++++.|+++.... ..+++++..+|+.+ ++...++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~----g~~~v~~~~~d~~~-l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA----GYTNVEFRLGEIEA-LPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc----CCCCEEEEEcchhh-CCCCCCceeEE
Confidence 45679999999999887766654 33358999999999999999986542 22478999999865 34345689999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+++...++.++. ...++++.++|||||++++.
T Consensus 151 i~~~v~~~~~d~----~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINLSPDK----ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccCCCCH----HHHHHHHHHHcCCCcEEEEE
Confidence 999877665544 67999999999999999985
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=99.58 E-value=5.2e-14 Score=108.83 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=81.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+..+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. .+.+++++.+|+.+.++ .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~-----~~~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALL-----AGVDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH-----hCCeeEEEECchhhhcc--CCCeeEEE
Confidence 445799999999999999888763 35999999999999999998754 22368899999876432 46899999
Q ss_pred ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+|....... ......+++++.+.|||||.+++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99875322110 0001457889999999999998754
No 70
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.58 E-value=2e-14 Score=111.78 Aligned_cols=104 Identities=20% Similarity=0.365 Sum_probs=84.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~ 129 (197)
.++++|||+|||+|+.+.++++. .+..+++++|+++++++.|++++... ++. ++++++.+|+.+.++.- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCC
Confidence 45789999999999988888764 34579999999999999999998763 333 58999999999877641 36
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+||+|++|...+ . + ..+++.+.+.|+|||.+++
T Consensus 144 ~fD~VfiDa~k~---~---y-~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKP---N---Y-VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHH---H---H-HHHHHHHHHhcCCCeEEEE
Confidence 899999997521 1 1 5789999999999999886
No 71
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.58 E-value=2.4e-14 Score=110.12 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=84.4
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
..++..+. ..++.+|||||||+|.++..+++..+ ..+++++|+++++++.|++++... ..++++++.+|+.+
T Consensus 67 ~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~----g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 67 AMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL----GLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----CCCCeEEEECCccc
Confidence 44444443 25668999999999999998887643 357999999999999999988653 23579999999876
Q ss_pred HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.+.. ..+||+|+++.+.+. ..+.+.+.|+|||++++....
T Consensus 140 ~~~~-~~~fD~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 140 GWEP-LAPYDRIYVTAAGPK----------IPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCcc-cCCCCEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEcC
Confidence 4432 468999999875322 235678899999999987643
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.58 E-value=2.3e-14 Score=109.68 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=90.9
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
.++...+..+ +++.+|||||||+|.++..+++.. +..++++||+++ + . ..++++++++|+.+
T Consensus 40 ~~~~~~~~~~--~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~------~~~~v~~i~~D~~~ 102 (209)
T PRK11188 40 DEIQQSDKLF--KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D------PIVGVDFLQGDFRD 102 (209)
T ss_pred HHHHHHhccC--CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c------CCCCcEEEecCCCC
Confidence 3444444322 456799999999999999888764 346999999998 1 1 12468899999876
Q ss_pred HH-------hhcCCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592 123 FM-------SEHQQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 188 (197)
Q Consensus 123 ~~-------~~~~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 188 (197)
.. +...++||+|++++..++...+.. .....++.+.++|+|||.|++.. ...+.+.+++..+
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l 178 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREI 178 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHH
Confidence 31 123578999999875444322110 01468899999999999999843 2245666677777
Q ss_pred HhhCCccc
Q psy4592 189 ASVFPRLH 196 (197)
Q Consensus 189 ~~~f~~v~ 196 (197)
+..|..++
T Consensus 179 ~~~f~~v~ 186 (209)
T PRK11188 179 RSLFTKVK 186 (209)
T ss_pred HhCceEEE
Confidence 77777664
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=6.1e-14 Score=112.37 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=86.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++++|||+|||+|.++..+++.+ ..+++++|+++.+++.|+++.... +. ..++.+..++.. ....++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n--~~-~~~~~~~~~~~~---~~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN--QV-SDRLQVKLIYLE---QPIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CC-CcceEEEecccc---cccCCCceEEE
Confidence 456899999999999998887764 469999999999999999987642 11 235666666632 22246899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 193 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 193 (197)
++.... . ...++.++.++|||||.+++.... ......+.+.+++.|.
T Consensus 231 an~~~~-----~--l~~ll~~~~~~LkpgG~li~sgi~----~~~~~~v~~~~~~~f~ 277 (288)
T TIGR00406 231 ANILAE-----V--IKELYPQFSRLVKPGGWLILSGIL----ETQAQSVCDAYEQGFT 277 (288)
T ss_pred EecCHH-----H--HHHHHHHHHHHcCCCcEEEEEeCc----HhHHHHHHHHHHccCc
Confidence 987421 1 156889999999999999986432 3445556666655454
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=2.8e-14 Score=108.94 Aligned_cols=103 Identities=23% Similarity=0.285 Sum_probs=79.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|..+..+++..+ ..+++++|+++++++.|++++...+ + ..+++++.+|+.+.++. ..+||+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~-~~~v~~~~~d~~~~~~~-~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--Y-WGVVEVYHGDGKRGLEK-HAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEECCcccCCcc-CCCccEE
Confidence 4557999999999999988876532 4689999999999999999876531 1 23689999998765443 4689999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+++..... +.+++.+.|+|||++++...
T Consensus 147 i~~~~~~~----------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 147 IVTAAAST----------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEccCcch----------hhHHHHHhcCcCcEEEEEEc
Confidence 99876432 22567889999999998653
No 75
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.58 E-value=7.8e-15 Score=113.32 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=83.3
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
++|||||||+|..+..+++..+..+++++|+++++++.+++++... ++ .++++++.+|+.+. +. .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~i~~~~~d~~~~-~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GL-QGRIRIFYRDSAKD-PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CcceEEEecccccC-CC-CCCCCEeehHH
Confidence 4799999999999998887766679999999999999999987542 12 35789999997543 22 35899999876
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
..++..+. ..++++++++|||||.+++..
T Consensus 76 ~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIKDK----MDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCCCH----HHHHHHHHHHcCCCCEEEEEE
Confidence 65555443 789999999999999999864
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=2.9e-14 Score=109.38 Aligned_cols=115 Identities=24% Similarity=0.262 Sum_probs=84.8
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592 41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119 (197)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d 119 (197)
..+..++..+. ..++.+|||||||+|+++..+++.. +..+++++|+++++++.+++++... ...+++++++|
T Consensus 63 ~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~----g~~~v~~~~gd 135 (212)
T PRK13942 63 HMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL----GYDNVEVIVGD 135 (212)
T ss_pred HHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEECC
Confidence 33444444443 2466899999999999998887653 3469999999999999999987653 23479999999
Q ss_pred hHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 120 ~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+...+. ...+||+|+++...+. ..+.+.+.|||||.+++....
T Consensus 136 ~~~~~~-~~~~fD~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 136 GTLGYE-ENAPYDRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred cccCCC-cCCCcCEEEECCCccc----------chHHHHHhhCCCcEEEEEEcC
Confidence 876443 2468999999765322 224567789999999986543
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=3.1e-14 Score=121.50 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=85.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||||||+|..+..+++..+ .+++++|+++++++.|+++... ...++++.++|+.+. +.+.++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKK-TYPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccC-CCCCCCEEEEE
Confidence 4567999999999999988887653 6999999999999999987643 235799999997652 33356899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+....++.+++ ..++++++++|||||.+++..
T Consensus 338 s~~~l~h~~d~----~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHIQDK----PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccccCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 98776666554 789999999999999999864
No 78
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.57 E-value=8.3e-14 Score=110.29 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..++...+ ...++++|+++.+++.+++++... ...+++++..|+..+.. ..++||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~----g~~~v~~~~~D~~~~~~-~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC----GVLNVAVTNFDGRVFGA-AVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc----CCCcEEEecCCHHHhhh-hccCCCEE
Confidence 4567999999999999988876432 358999999999999999988753 22478999999876433 34579999
Q ss_pred EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592 135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 194 (197)
++|+|.... .++.. ...++++.+.+.|||||+++..+++... +....+.+.+.+.+|+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~--~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP--EENEAVVDYLLEKRPD 220 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--HHHHHHHHHHHHhCCC
Confidence 999986432 11110 1246899999999999999988766333 3334445544444443
No 79
>PRK04266 fibrillarin; Provisional
Probab=99.57 E-value=7.6e-14 Score=107.82 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=78.6
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--hhcCCcee
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--SEHQQEFD 132 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~D 132 (197)
..++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+.... .+++.++.+|+.+.. ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence 3566799999999999999998765446899999999999977766542 257899999986421 11135699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+|+++...++ . ...+++++.++|||||.+++.
T Consensus 144 ~i~~d~~~p~---~---~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQPN---Q---AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCChh---H---HHHHHHHHHHhcCCCcEEEEE
Confidence 9998765311 1 134689999999999999985
No 80
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.2e-14 Score=107.02 Aligned_cols=110 Identities=26% Similarity=0.399 Sum_probs=89.1
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
-..|+..+.. .++.+|||||||+|+.+..+++.. .+|+.+|..++..+.|++++... ...|+.++++|...
T Consensus 61 vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l----g~~nV~v~~gDG~~ 131 (209)
T COG2518 61 VARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL----GYENVTVRHGDGSK 131 (209)
T ss_pred HHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc----CCCceEEEECCccc
Confidence 3445554432 567899999999999999888875 39999999999999999998764 34579999999988
Q ss_pred HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
.++. ..+||.|++....+..| +.+.+.||+||++++..+
T Consensus 132 G~~~-~aPyD~I~Vtaaa~~vP----------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 132 GWPE-EAPYDRIIVTAAAPEVP----------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCC-CCCcCEEEEeeccCCCC----------HHHHHhcccCCEEEEEEc
Confidence 7765 47899999988765554 446779999999999876
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.56 E-value=5.9e-14 Score=120.22 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred CCCcEEEEcCeeeeeccchhhH-HHHHHhhcc---------------------cCCCCCCeEEEEeCCchHhHHHHhcCC
Q psy4592 22 EFGTALILDGIIQCTEFDEFSY-SEMIAFLPL---------------------CSHPNPKKVLIVGGGDGGVAREVLKHP 79 (197)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~~~vLdiG~G~G~~~~~l~~~~ 79 (197)
.||..+.++..+-...++-... ...+..+.. ....++.+|||+|||+|.++..+++..
T Consensus 81 F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~ 160 (506)
T PRK01544 81 FYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL 160 (506)
T ss_pred EcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHC
Confidence 4788888887666555543222 333332210 001134689999999999999888766
Q ss_pred CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCC--------------
Q psy4592 80 SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA-------------- 145 (197)
Q Consensus 80 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~-------------- 145 (197)
+..+++++|+|+.+++.|+++.... ++ ..+++++.+|+.+.+. .++||+|++|||......
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~--~l-~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~ 235 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKY--EV-TDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPS 235 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CC-ccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcH
Confidence 6689999999999999999987542 11 2478999999765432 358999999997432110
Q ss_pred cccc--------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 146 ESLF--------QASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 146 ~~l~--------~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
..++ -..+++++.+.|+|||.+++..+
T Consensus 236 ~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 236 IALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0011 13467788899999999998653
No 82
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.56 E-value=6.4e-14 Score=106.74 Aligned_cols=105 Identities=24% Similarity=0.402 Sum_probs=88.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~D 132 (197)
.++++||+||++.|+.+.+++...+ ..++++||++|++.+.|++++.+ .+.. +++..+. +|+.+.+.. ..++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~--ag~~-~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE--AGVD-DRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH--cCCc-ceEEEEecCcHHHHHHhccCCCcc
Confidence 4778999999999999999998665 67999999999999999999876 3333 4688888 699998875 468999
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+||.|...... +++++.+.++|+|||.+++-
T Consensus 135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKADY-------PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEe
Confidence 99999842221 78999999999999999874
No 83
>PRK08317 hypothetical protein; Provisional
Probab=99.56 E-value=1.7e-13 Score=106.25 Aligned_cols=106 Identities=24% Similarity=0.301 Sum_probs=85.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..+.+|||+|||+|.++..++... +..+++++|+++.+++.++++... ..+++++..+|+.+. +...++||+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~-~~~~~~~D~v 91 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGL-PFPDGSFDAV 91 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccC-CCCCCCceEE
Confidence 456799999999999999888764 557999999999999999887322 245789999997652 3335789999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++....++..+. ..+++++.++|||||.+++..
T Consensus 92 ~~~~~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 92 RSDRVLQHLEDP----ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEechhhccCCH----HHHHHHHHHHhcCCcEEEEEe
Confidence 998876665554 679999999999999998865
No 84
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=5.3e-14 Score=114.27 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+++|||||||+|.++..++..++ ..|+++|.++.++..++....... ...+++++.+|+.+. +. .++||+|++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEEE
Confidence 457999999999999999888754 479999999998865433211100 235799999998764 43 578999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
....++..++ ..+++++++.|+|||.+++..
T Consensus 196 ~~vl~H~~dp----~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 196 MGVLYHRRSP----LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CChhhccCCH----HHHHHHHHHhcCCCcEEEEEE
Confidence 8776665544 679999999999999999863
No 85
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.55 E-value=3.4e-14 Score=107.49 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=93.3
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeEEEEC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVIITD 137 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~I~~~ 137 (197)
.+||||||.|.+...+++..|...+.|||+....+..+.+..... ..+|+.++++|+...+.. .+++.|.|+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 899999999999999998888899999999999888777665432 346999999999987765 35799999999
Q ss_pred CCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 138 SSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 138 ~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
.|.||.. ..++.++.+++.+.++|+|||.+.+.+.. .+.+...++.+..
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 9999862 35678899999999999999999998766 3455555555544
No 86
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=1.1e-13 Score=116.51 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=95.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..++... +..+++++|+++.+++.+++++... ...++++.++|+.++.....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~----g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL----KLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhhhhhhhhccCCEE
Confidence 456799999999999998888653 3469999999999999999987653 22468999999887542334689999
Q ss_pred EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592 135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 194 (197)
++|+|..... ++.. ...+.+.++.+.|||||.+++.+++... +....+.+.|-+.+|+
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~--eEne~vv~~fl~~~~~ 387 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK--EENTEVVKRFVYEQKD 387 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--hhCHHHHHHHHHhCCC
Confidence 9999863321 1100 1256789999999999999998877433 3334444434333443
No 87
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.6e-14 Score=107.60 Aligned_cols=123 Identities=25% Similarity=0.393 Sum_probs=101.3
Q ss_pred CCCCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
..++.+|+|.|.|+|.++.+++. .++..+++.+|+.++..+.|++|+... ++. +++++..+|+.+.... +.||+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~-d~v~~~~~Dv~~~~~~--~~vDa 166 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLG-DRVTLKLGDVREGIDE--EDVDA 166 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccc-cceEEEeccccccccc--cccCE
Confidence 35778999999999999999986 456689999999999999999998764 333 3599999999886654 48999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh-CCcc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRL 195 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~v 195 (197)
|+.|.+.|| ++++.+.++|||||.+++.+.+ .+++++....+++. |-++
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPT----VEQVEKTVEALRERGFVDI 216 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHHHHHhcCccch
Confidence 999997544 4889999999999999997644 57888888888877 6554
No 88
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=2.7e-14 Score=114.43 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=81.0
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|..+..+++.+ .+++++|+++.+++.++++... .+.++++...|+.... ..++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~-----~~l~v~~~~~D~~~~~--~~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEK-----ENLNIRTGLYDINSAS--IQEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH-----cCCceEEEEechhccc--ccCCccEEEE
Confidence 45699999999999999988764 6999999999999999987654 2236888888875532 2578999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
....+..+... ...+++++.++|+|||++++.
T Consensus 191 ~~vl~~l~~~~--~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRER--IPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHH--HHHHHHHHHHhcCCCcEEEEE
Confidence 88766543222 267999999999999996654
No 89
>PLN02476 O-methyltransferase
Probab=99.54 E-value=9.2e-14 Score=109.77 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=86.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~ 129 (197)
.++++|||||+++|+.+.++++.. +..+++++|.+++..+.|++++... ++. ++++++.+|+.+.++.. .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCC
Confidence 467899999999999999988753 3468999999999999999998763 333 58999999999987642 35
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+||+|+.|.... . ..++++.+.++|+|||.+++.
T Consensus 194 ~FD~VFIDa~K~---~----Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKR---M----YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHH---H----HHHHHHHHHHhcCCCcEEEEe
Confidence 899999998521 1 167999999999999998875
No 90
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.54 E-value=7.4e-14 Score=112.57 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=80.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHH---hhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSK---KYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 132 (197)
.++++|||+|||+|.++..++..+. ..++++|.++.++..++ +... ...++.+..+++.+. +. ..+||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l-p~-~~~FD 190 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL-HE-LYAFD 190 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-CC-CCCcC
Confidence 4567999999999999888887654 57999999999886543 3322 235788888887664 32 35899
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|++....++.+++ ..++++++++|||||.+++..
T Consensus 191 ~V~s~gvL~H~~dp----~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSP----LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCH----HHHHHHHHHhcCCCCEEEEEE
Confidence 99999877666554 679999999999999999864
No 91
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.54 E-value=2.1e-14 Score=109.17 Aligned_cols=105 Identities=29% Similarity=0.466 Sum_probs=85.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----CC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-----QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~ 129 (197)
.++++||+||+++|+.+.++++..+ ..+++.+|++++..+.|++++... ++ ..+++++.+|+.+.++.- .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~-~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GL-DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TG-GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CC-CCcEEEEEeccHhhHHHHHhccCCC
Confidence 4678999999999999999997643 579999999999999999988752 33 358999999999987741 25
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+||+|+.|... ..+ ..+++.+.++|+|||++++-
T Consensus 121 ~fD~VFiDa~K------~~y-~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADK------RNY-LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTG------GGH-HHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEcccc------cch-hhHHHHHhhhccCCeEEEEc
Confidence 89999999842 111 67999999999999999986
No 92
>PRK06922 hypothetical protein; Provisional
Probab=99.53 E-value=1.1e-13 Score=119.46 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~ 135 (197)
++.+|||+|||+|..+..+++..+..+++++|+++.|++.|+++.+. .+.+++++++|+.+... ..+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-----~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-----EGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 46799999999999988888766778999999999999999987643 23478889999876321 2457899999
Q ss_pred ECCCCCCCCC---------cccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPA---------ESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~---------~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.+.|+... ..-....++++++++|||||.+++.-
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9877654210 00112678999999999999999964
No 93
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.53 E-value=1e-13 Score=110.01 Aligned_cols=128 Identities=22% Similarity=0.269 Sum_probs=92.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~ 133 (197)
..+++|||+-|.||+++.++++.+ ..+++.||.|..+++.+++|+.. ++++..+++++.+|+.+++.. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~l--Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAAL--NGLDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHH--TT-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--cCCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 356899999999999999877654 46899999999999999999875 344556899999999998764 3579999
Q ss_pred EEECCCCCCCCCccccc--HHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592 134 IITDSSDPVGPAESLFQ--ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 186 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~--~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 186 (197)
||+|||........+.. .+++..+.++|+|||.+++.++++....+.+.+...
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 99999964432222211 457888999999999999999998887766655443
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.53 E-value=2e-13 Score=107.37 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=79.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+.+.+. .+++++|+|+.+++.|++++... +. ..++.+..+| .+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~--~~-~~~~~~~~~~---------~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN--GV-ELNVYLPQGD---------LKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CC-CceEEEccCC---------CCcCEEE
Confidence 4668999999999999988777643 57999999999999999987642 11 1234433332 2799999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
++...+ . ...+++++.++|||||.+++.... ......+...+++.
T Consensus 185 ani~~~----~---~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~ 229 (250)
T PRK00517 185 ANILAN----P---LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEA 229 (250)
T ss_pred EcCcHH----H---HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHC
Confidence 986421 1 156889999999999999996432 23444555555544
No 95
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.9e-13 Score=107.07 Aligned_cols=139 Identities=22% Similarity=0.335 Sum_probs=94.7
Q ss_pred CCcEEEEcCeeeeeccchhhH-HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhc
Q psy4592 23 FGTALILDGIIQCTEFDEFSY-SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL 101 (197)
Q Consensus 23 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~ 101 (197)
+|..+..+..+-...++-... ..++..+. ..+.+|||+|||+|.++..+++..+..+|+++|+|+..++.|++|.
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~~~~----~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALALLL----QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHHHhhh----hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 555666665555444443333 22221111 1112899999999999999999988789999999999999999998
Q ss_pred CCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC-CCC-----C-----Cc--cc--------ccHHHHHHHHhh
Q psy4592 102 PGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD-PVG-----P-----AE--SL--------FQASYFELMSRA 160 (197)
Q Consensus 102 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~-~~~-----~-----~~--~l--------~~~~~~~~~~~~ 160 (197)
... ++ .++.++.+|..+ .-.++||+|++|||. +.. + .+ .+ ....++.++.+.
T Consensus 155 ~~~--~l--~~~~~~~~dlf~---~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~ 227 (280)
T COG2890 155 ERN--GL--VRVLVVQSDLFE---PLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI 227 (280)
T ss_pred HHc--CC--ccEEEEeeeccc---ccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence 752 11 456666666433 223489999999984 221 0 00 01 125688899999
Q ss_pred cCCCcEEEEEcC
Q psy4592 161 LRPGGIVCSQAG 172 (197)
Q Consensus 161 LkpgG~l~~~~~ 172 (197)
|+|||.+++...
T Consensus 228 l~~~g~l~le~g 239 (280)
T COG2890 228 LKPGGVLILEIG 239 (280)
T ss_pred cCCCcEEEEEEC
Confidence 999999999764
No 96
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=1.5e-13 Score=115.70 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=87.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..+++..+..+++++|+++.+++.+++++... +.+++++++|+.+.... ..++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-----g~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-----GLKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEcCcccchhhcccCCCCEE
Confidence 4567999999999999999887655479999999999999999998753 22468999998764321 24679999
Q ss_pred EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
++|+|.... ..+.. ...++++.+.+.|||||.+++.+++...
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 999985421 01100 0136899999999999999998876444
No 97
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=1.4e-13 Score=116.60 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=87.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..+++.. +..+++++|+++++++.+++++... ...+++++++|+.+......++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~----g~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL----GLTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCCcccccchhcccCCEE
Confidence 455799999999999999988753 4479999999999999999988653 22359999999876532223689999
Q ss_pred EECCCCCCC------CCcc-------c-----ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 135 ITDSSDPVG------PAES-------L-----FQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 135 ~~~~~~~~~------~~~~-------l-----~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
++|+|.... ++.. + ...++++.+.++|||||.++..+++...
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 999975321 1000 0 1245899999999999999987766443
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.52 E-value=1.3e-13 Score=114.29 Aligned_cols=102 Identities=24% Similarity=0.329 Sum_probs=81.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++.+|||||||+|.++..+++..+ .+++++|+|+++++.|+++... .++++..+|..+. .++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc----CCCCCEEE
Confidence 4567999999999999998887654 6999999999999999998642 2488888887543 36899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+....++.+... .+.+++++.++|||||.+++..
T Consensus 234 s~~~~ehvg~~~--~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHVGPKN--YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhCChHH--HHHHHHHHHHHcCCCcEEEEEE
Confidence 876654432221 1679999999999999999865
No 99
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=121.97 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=90.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++++|||+|||+|+++..+++.+ ..+|++||+|+.+++.|++|+... +++..+++++++|+.+++....++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 46799999999999999998763 357999999999999999998753 233247999999999887654568999999
Q ss_pred CCCCCCCCCc--ccc-----cHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 137 DSSDPVGPAE--SLF-----QASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 137 ~~~~~~~~~~--~l~-----~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
|||....... ... -.++++.+.++|+|||.+++.++....
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~ 661 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF 661 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence 9986432111 000 146788889999999999987765443
No 100
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.52 E-value=6.7e-14 Score=108.93 Aligned_cols=144 Identities=24% Similarity=0.384 Sum_probs=100.2
Q ss_pred ccchhhHHHHHHh-hcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE
Q psy4592 37 EFDEFSYSEMIAF-LPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT 114 (197)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~ 114 (197)
.+.+-.|..-+.. +..+...++.+|||-|+|+|+++.++++. .+..+++.+|+.++.++.|++++..+ ++ ..+++
T Consensus 19 rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl-~~~v~ 95 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GL-DDNVT 95 (247)
T ss_dssp SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TC-CTTEE
T ss_pred CCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CC-CCCce
Confidence 3445556332222 22344477899999999999999998863 55679999999999999999998764 22 35899
Q ss_pred EEEcchH-HHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc-CCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 115 VHVGDGF-RFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL-RPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 115 ~~~~d~~-~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
+.+.|+. +.... ....+|+|+.|.|.||. .+..+.++| |+||++++.+.+ .++.++.+..+++.
T Consensus 96 ~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~---------~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~~ 162 (247)
T PF08704_consen 96 VHHRDVCEEGFDEELESDFDAVFLDLPDPWE---------AIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALREH 162 (247)
T ss_dssp EEES-GGCG--STT-TTSEEEEEEESSSGGG---------GHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHHT
T ss_pred eEecceecccccccccCcccEEEEeCCCHHH---------HHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHHC
Confidence 9999985 33321 23689999999976554 678899999 899999997655 58888888888875
Q ss_pred -CCccc
Q psy4592 192 -FPRLH 196 (197)
Q Consensus 192 -f~~v~ 196 (197)
|.+++
T Consensus 163 gf~~i~ 168 (247)
T PF08704_consen 163 GFTDIE 168 (247)
T ss_dssp TEEEEE
T ss_pred CCeeeE
Confidence 66553
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.52 E-value=5e-14 Score=104.76 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+.-.++||+|||.|.++..|+.+. .+++++|+++..++.|+++... .++++++++|+.++.+ .++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~P--~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFWP--EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCCC--CCCeeEEE
Confidence 444799999999999999998886 6999999999999999999863 4689999999877654 47999999
Q ss_pred ECCCCCCCCCc-ccccHHHHHHHHhhcCCCcEEEEEcCC-----CCcChhHHHHHHHHHHhhCC
Q psy4592 136 TDSSDPVGPAE-SLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCVGNTLQHCASVFP 193 (197)
Q Consensus 136 ~~~~~~~~~~~-~l~~~~~~~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~~~~~~~f~ 193 (197)
+.-..++..+. .+ ..+++.+.+.|+|||.+++-... .|......+.+...+.+.+-
T Consensus 112 ~SEVlYYL~~~~~L--~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 112 LSEVLYYLDDAEDL--RAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EES-GGGSSSHHHH--HHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EehHhHcCCCHHHH--HHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 98776665432 22 56889999999999999985321 13333344555555555543
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=99.52 E-value=1.6e-13 Score=108.98 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=83.0
Q ss_pred CCCCeEEEEeCCchHhHHH-Hh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVARE-VL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~-l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
..+++|+|||||.|.++.. ++ ...+.++++++|+|+++++.|++.+..- .++ .++++|+.+|+.+... ..++||+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhccc-ccCCcCE
Confidence 3778999999997755433 33 3567789999999999999999988421 122 3589999999987432 2468999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+++...++.... ..+.++++.+.|+|||++++-+
T Consensus 199 VF~~ALi~~dk~~---k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEE---KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEeccccccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence 9999433433222 2789999999999999999976
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.1e-13 Score=109.74 Aligned_cols=123 Identities=21% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++++|||+|||+|.++.++++.+. .+++++|+||-.++.|+.|...+ +.. ...+....+..+.. ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N--~v~-~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN--GVE-LLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc--CCc-hhhhcccccchhhc--ccCcccEEE
Confidence 4778999999999999999988854 78999999999999999998752 111 11222223322221 236899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh-hCCcc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS-VFPRL 195 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~f~~v 195 (197)
+|.-.... ..+...+.+.|||||+++++..- .+....+...+.+ -|..+
T Consensus 235 ANILA~vl-------~~La~~~~~~lkpgg~lIlSGIl----~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 235 ANILAEVL-------VELAPDIKRLLKPGGRLILSGIL----EDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred ehhhHHHH-------HHHHHHHHHHcCCCceEEEEeeh----HhHHHHHHHHHHhCCCeEe
Confidence 99842111 56889999999999999996522 4556666666643 35433
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.51 E-value=4.7e-14 Score=107.61 Aligned_cols=116 Identities=28% Similarity=0.369 Sum_probs=85.8
Q ss_pred chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE
Q psy4592 39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117 (197)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 117 (197)
.+..+..++..+.+ +++.+|||||||+|+.+..+++. .+...+++||+++.+++.|++++..+ ...++.+++
T Consensus 57 ~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~----~~~nv~~~~ 129 (209)
T PF01135_consen 57 APSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL----GIDNVEVVV 129 (209)
T ss_dssp -HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH----TTHSEEEEE
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh----ccCceeEEE
Confidence 45556677776653 56789999999999999888875 33457999999999999999998754 345899999
Q ss_pred cchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 118 ~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+|....++. ..+||.|++.......| ..+.+.|++||++++...
T Consensus 130 gdg~~g~~~-~apfD~I~v~~a~~~ip----------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPE-EAPFDRIIVTAAVPEIP----------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGG-G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred cchhhcccc-CCCcCEEEEeeccchHH----------HHHHHhcCCCcEEEEEEc
Confidence 999876654 46899999988653322 456778999999999764
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=1.2e-13 Score=109.93 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=75.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCC---CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPS---VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
...+|||+|||+|.++..+.+..+ ...++++|+++++++.|++.. +++++.++|+.+ ++..+++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~-lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHR-LPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeeccc-CCCcCCceeE
Confidence 446899999999999988876543 247999999999999998753 357888899765 3444678999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
|++... +..++++.++|||||++++....+
T Consensus 155 I~~~~~-----------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 155 IIRIYA-----------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEecC-----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 997542 124578999999999999876443
No 106
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.51 E-value=7.3e-13 Score=101.99 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=95.0
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEEEE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVIIT 136 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~ 136 (197)
..+||||||.|.+...+++..|...+.|||+....+..|.+.+... .-+|+.+++.||.+.+..- +++.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 4899999999999999999989999999999998888777766542 2238999999999988763 449999999
Q ss_pred CCCCCCCC----CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGP----AESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~----~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+.|+||.. -.++..+.+++.+.+.|+|||.+.+.+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 99999962 25588899999999999999999997755
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.50 E-value=2.1e-13 Score=111.27 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=85.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++.+|||+|||+|.++.+++... ..++++|+++.+++.+++++... ...++++.++|+.+. +...++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~----g~~~i~~~~~D~~~l-~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHY----GIEDFFVKRGDATKL-PLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHh----CCCCCeEEecchhcC-CcccCCCCEEE
Confidence 556799999999999988876653 78999999999999999987642 223488999998763 33357899999
Q ss_pred ECCCCCCCCC--cc---cccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPA--ES---LFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~--~~---l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+|||...... .. -...++++++.++|+|||++++....
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 9998644211 11 11267999999999999999887644
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=2.8e-13 Score=114.67 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=87.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..+++.. +..+++++|+++.+++.+++++... ...+++++++|+.+.. ..++||+|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~----g~~~v~~~~~Da~~~~--~~~~fD~V 322 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL----GITIIETIEGDARSFS--PEEQPDAI 322 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh----CCCeEEEEeCcccccc--cCCCCCEE
Confidence 455799999999999988877643 2359999999999999999988653 2246899999987754 24689999
Q ss_pred EECCCCCCCC----Cc----cc----------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 135 ITDSSDPVGP----AE----SL----------FQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 135 ~~~~~~~~~~----~~----~l----------~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
++|+|..... .+ .. ...+++..+.+.|||||++++.+++...
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 9998753321 10 00 1135899999999999999999877544
No 109
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=1.5e-12 Score=103.27 Aligned_cols=137 Identities=16% Similarity=0.098 Sum_probs=89.8
Q ss_pred HHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF 123 (197)
Q Consensus 45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 123 (197)
.++.-+..+...+..+|||+|||+|.++..++... +...|++||+++++.+.+.+.... .+|+.++.+|++..
T Consensus 120 ~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p 193 (293)
T PTZ00146 120 AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYP 193 (293)
T ss_pred HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccCh
Confidence 33344554444666899999999999999999764 346899999999866444433221 24788999998642
Q ss_pred H--hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc----C-hhHHHHHHHHHHhh-CC
Q psy4592 124 M--SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----S-LDCVGNTLQHCASV-FP 193 (197)
Q Consensus 124 ~--~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~----~-~~~~~~~~~~~~~~-f~ 193 (197)
. ....+++|+|++|... ++. ...++.++.+.|||||.|++....... . .+.+.+..+.+++. |.
T Consensus 194 ~~y~~~~~~vDvV~~Dva~---pdq---~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~ 265 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVAQ---PDQ---ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK 265 (293)
T ss_pred hhhhcccCCCCEEEEeCCC---cch---HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence 2 2124579999999853 221 145667899999999999985422111 1 12334444666665 54
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.50 E-value=3.5e-13 Score=105.74 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=86.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...+|||+|||+|.++..+++..+..+++++|+++.+++.+++++ ++++++++|+.++.. ..+||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 346999999999999888877654479999999999999998864 257899999987643 368999999
Q ss_pred CCCCCCCCCcc-----cc-----------cHHHHHHHHhhcCCCcEEEEEc-CCCCcChhHHHHHH
Q psy4592 137 DSSDPVGPAES-----LF-----------QASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTL 185 (197)
Q Consensus 137 ~~~~~~~~~~~-----l~-----------~~~~~~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~ 185 (197)
|+|.+..+... -+ -..+++....+|+|+|.+.+-. ..+.+....-...+
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y 198 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY 198 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH
Confidence 99976531110 01 1567888899999999765543 33555444434444
No 111
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=4.5e-13 Score=113.11 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=87.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---hcCCce
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---EHQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~ 131 (197)
.++.+|||+|||+|+.+..+++.. +..+++++|+++.+++.+++++... ...+++++++|+.+... ...++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL----GLKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc----CCCeEEEEeCChhhcccccccccccC
Confidence 456799999999999999888653 3368999999999999999988653 22469999999877532 123689
Q ss_pred eEEEECCCCCCC------CCcc-c-----------ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 132 DVIITDSSDPVG------PAES-L-----------FQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 132 D~I~~~~~~~~~------~~~~-l-----------~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
|.|++|+|.... ++.. . ...++++++.+.|||||.++..+++.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999885321 1100 0 02578999999999999999887663
No 112
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=1.7e-13 Score=104.44 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++.+|||+|||+|..+..+.+..+..++++||+|+++++.|+++++ ++++.++|+.+ +...++||+|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--~~~~~sfD~V~ 110 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--PFKDNFFDLVL 110 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--CCCCCCEEEEE
Confidence 45679999999999999998876556899999999999999988653 45677888766 33467999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
++...++.++.. ..++++++.+++ ++++++
T Consensus 111 ~~~vL~hl~p~~--~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 111 TKGVLIHINPDN--LPTAYRELYRCS--NRYILI 140 (204)
T ss_pred ECChhhhCCHHH--HHHHHHHHHhhc--CcEEEE
Confidence 988775543221 267888999987 445555
No 113
>PLN02672 methionine S-methyltransferase
Probab=99.49 E-value=1.5e-12 Score=118.45 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=86.1
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC------------CCCCCeEEEEcchHHHHh
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG------------LSDPRLTVHVGDGFRFMS 125 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~d~~~~~~ 125 (197)
+.+|||+|||+|.++..+++..+..+++++|+|+++++.|++|....+.. ....+++++++|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999998776679999999999999999987642100 011479999999877653
Q ss_pred hcCCceeEEEECCCCCCC--------------C---------Cccccc-----------HHHHHHHHhhcCCCcEEEEEc
Q psy4592 126 EHQQEFDVIITDSSDPVG--------------P---------AESLFQ-----------ASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~--------------~---------~~~l~~-----------~~~~~~~~~~LkpgG~l~~~~ 171 (197)
....+||+||+|||.-.. | ...|.. ..+++++.+.|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 322479999999983110 0 111211 457788889999999999987
Q ss_pred CC
Q psy4592 172 GT 173 (197)
Q Consensus 172 ~~ 173 (197)
+.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 54
No 114
>KOG1270|consensus
Probab=99.49 E-value=4.1e-14 Score=108.85 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC---CCeEEEEcchHHHHhhcCCceeEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD---PRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+++|||+|||+|-++..|++.+ ++|+|||+++.+++.|+..... ...++. .++++.+.|++. ..++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~-dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM-DPVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc-Cchhccccceeeehhhcchhh----ccccccee
Confidence 3689999999999999999886 7999999999999999987322 011111 135666666543 24569999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++.....+..++ +++++.+.+.|||||.+++....
T Consensus 163 vcsevleHV~dp----~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKDP----QEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHhCH----HHHHHHHHHHhCCCCceEeeehh
Confidence 998766555444 78999999999999999998654
No 115
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=5.8e-13 Score=103.15 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.+|||+|||||.++..+.+.. ..+++++|++++|++.|++.. ..+++|+.+ ++..+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~-lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEA-LPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhh-CCCCCCCEEEEEe
Confidence 36799999999999999888765 369999999999999987631 245788765 4556789999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGG 165 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG 165 (197)
....++.++. +..+++++|+|||.+
T Consensus 117 ~~~l~~~~d~----~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASDNI----EKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccCCH----HHHHHHHHHHhcCce
Confidence 8877665554 789999999999943
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=6.6e-14 Score=119.54 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-HhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~D~I~ 135 (197)
+..+|||||||+|.++..+++.. .+++++|+++++++.+++... ..++++++++|+.+. ++...++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45699999999999999998764 589999999999988766432 235789999998532 233457899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.+.++.++.. ..+++++++++|||||++++.-
T Consensus 109 ~~~~l~~l~~~~--~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 109 SNWLLMYLSDKE--VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhhHHhCCHHH--HHHHHHHHHHhcCCCeEEEEEe
Confidence 998876665432 1679999999999999998863
No 117
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.47 E-value=1.7e-12 Score=99.77 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++... ..++++..+|+.+.. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEEE
Confidence 35679999999999999998877654 5899999999999999987651 347889999987632 335689999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++....+...+. ..+++++.+.|+|||++++..
T Consensus 111 ~~~~~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDI----QKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccH----HHHHHHHHHHcCCCcEEEEEE
Confidence 987665554443 679999999999999998754
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.47 E-value=6.5e-13 Score=111.91 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=85.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I 134 (197)
.++.+|||+|||+|+.+..+++..+..+++++|+++++++.+++++...+ .. ..+.+..+|+...... ..++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCEE
Confidence 45679999999999999998876555799999999999999999987531 11 2344466775432111 24679999
Q ss_pred EECCCCCCCC----Cccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 135 ITDSSDPVGP----AESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 135 ~~~~~~~~~~----~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
++|+|..... .+.+ ...++++++.++|||||.+++.+++...
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 9998754321 1110 1257899999999999999998877443
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.46 E-value=7.1e-13 Score=99.86 Aligned_cols=121 Identities=14% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-----h--hc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-----S--EH 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~ 127 (197)
+++.+|||+|||+|.++..+++.. +..+++++|+++.+ . .++++++++|+.+.. . ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456799999999999998887653 44689999999854 1 135778878865421 1 12
Q ss_pred CCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592 128 QQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v 195 (197)
.++||+|+++++.+....+.+ .....++.+.++|+|||.+++.... ...+..++..++..|..+
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~----~~~~~~~l~~l~~~~~~~ 166 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ----GEEIDEYLNELRKLFEKV 166 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc----CccHHHHHHHHHhhhceE
Confidence 467999999864321111000 0156899999999999999986422 244455566665555443
No 120
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.46 E-value=7.3e-13 Score=102.87 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=84.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|||+|.++..++...+ ..+++++|+++.+++.+++++... + ...+++++.+|+.+. +...++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~-~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--G-LSGNVEFVQGDAEAL-PFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--c-cccCeEEEecccccC-CCCCCCccEE
Confidence 3457999999999999998887654 579999999999999999987531 1 134789999998663 2335689999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++....+...+. ..+++++.+.|+|||.+++..
T Consensus 126 ~~~~~l~~~~~~----~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 126 TIAFGLRNVPDI----DKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEecccccCCCH----HHHHHHHHHhccCCcEEEEEE
Confidence 987665555443 779999999999999987753
No 121
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.46 E-value=9e-13 Score=102.85 Aligned_cols=105 Identities=14% Similarity=0.255 Sum_probs=86.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------C
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------Q 128 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~ 128 (197)
.++++||+||+++|+.+.++++.. +..+++++|.+++..+.|++++... ++ .++++++.+|+.+.++.. .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~-~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GV-AHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CC-CCceEEEeccHHHHHHHHHhccccC
Confidence 467899999999999999988753 4579999999999999999998762 33 368999999999988752 2
Q ss_pred CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
++||+|+.|... ..+ ..+++.+.++|+|||++++-
T Consensus 155 ~~fD~iFiDadK------~~Y-~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADK------DNY-INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCH------HHh-HHHHHHHHHhcCCCeEEEEc
Confidence 689999999842 112 67899999999999998874
No 122
>KOG4300|consensus
Probab=99.46 E-value=4.7e-13 Score=99.59 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=82.1
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE-EEEcchHHHHhhcCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-VHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...||++|||||..-...-. -+.+++|++|.+|.|-+.+.+.+..- ...++. ++.+++++..+-.+++||.|++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence 35899999999987655432 35689999999999999998877642 345677 8899988865456789999998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
....-.-.++ .+.++++.++|+|||++++..
T Consensus 152 TlvLCSve~~----~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 152 TLVLCSVEDP----VKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEeccCCH----HHHHHHHHHhcCCCcEEEEEe
Confidence 7654333333 778999999999999999864
No 123
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=98.19 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=82.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++. + .+++++|+++++++.+++++... +....++.++.+|..+.+. ..+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEecccccccc--ccCceEEE
Confidence 45579999999999999998877 3 79999999999999998887542 1111228888898765432 34899999
Q ss_pred ECCCCCCCCCc-----------------ccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAE-----------------SLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~-----------------~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++++....... ......+++++.++|||||.+++...+
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99875331110 001256899999999999998886544
No 124
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=6.2e-14 Score=111.89 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=91.8
Q ss_pred EEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC
Q psy4592 26 ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA 105 (197)
Q Consensus 26 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~ 105 (197)
.+.+|--+.+.++...+.+-.+..+... ..++++|||+|||+|.++...++.+ ..+++++|+||..++.|+.|...+
T Consensus 131 ~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N- 207 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN- 207 (295)
T ss_dssp EEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT-
T ss_pred EEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc-
Confidence 4566655555555433333333333322 3566799999999999999988875 468999999999999999997652
Q ss_pred CCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHH
Q psy4592 106 VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 185 (197)
Q Consensus 106 ~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 185 (197)
+.. .++.+. ...+ ....+||+|++|... .-+ ..+...+.++|+|||+++++..- .+....+.
T Consensus 208 -~~~-~~~~v~--~~~~---~~~~~~dlvvANI~~-----~vL--~~l~~~~~~~l~~~G~lIlSGIl----~~~~~~v~ 269 (295)
T PF06325_consen 208 -GVE-DRIEVS--LSED---LVEGKFDLVVANILA-----DVL--LELAPDIASLLKPGGYLILSGIL----EEQEDEVI 269 (295)
T ss_dssp -T-T-TCEEES--CTSC---TCCS-EEEEEEES-H-----HHH--HHHHHHCHHHEEEEEEEEEEEEE----GGGHHHHH
T ss_pred -CCC-eeEEEE--Eecc---cccccCCEEEECCCH-----HHH--HHHHHHHHHhhCCCCEEEEcccc----HHHHHHHH
Confidence 222 255442 1111 123789999999842 111 45777889999999999996432 34445555
Q ss_pred HHHHh
Q psy4592 186 QHCAS 190 (197)
Q Consensus 186 ~~~~~ 190 (197)
+.+++
T Consensus 270 ~a~~~ 274 (295)
T PF06325_consen 270 EAYKQ 274 (295)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 55543
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=99.45 E-value=5.5e-13 Score=102.43 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=75.5
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC---CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP---SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++.. +++++++|+.... ..++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhccc--ccCCccE
Confidence 35699999999999999887642 24689999999999999998752 4789999986532 2468999
Q ss_pred EEECCCCCCCCCc--------ccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 134 IITDSSDPVGPAE--------SLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 134 I~~~~~~~~~~~~--------~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
||+|||....... .+.-..+++.+.+++++|+. ++.
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 9999997542111 12235688888886666665 554
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.44 E-value=1e-12 Score=100.73 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=79.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--------CCCCCCCeEEEEcchHHHHhhc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--------VGLSDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~ 127 (197)
+++.+|||+|||.|..+..++..+ ..|+++|+++.+++.+.+...... ......++++.++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 355699999999999999998774 799999999999997644221100 0001347899999987643222
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.++||.|+.....+..+... ...+++.+.++|||||.+++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~--R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEM--RQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHHH--HHHHHHHHHHHcCCCCeEEEEE
Confidence 35799999876654443221 3679999999999999755553
No 127
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=1.9e-13 Score=102.43 Aligned_cols=104 Identities=22% Similarity=0.231 Sum_probs=77.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
++.++||+|||.|..+.++++.+ ..|+++|+|+..++.+++.... .+-.++..+.|+.++.. +++||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-----~~l~i~~~~~Dl~~~~~--~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-----EGLDIRTRVADLNDFDF--PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-----TT-TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-----cCceeEEEEecchhccc--cCCcCEEEE
Confidence 56799999999999999999885 7999999999999988776543 23358889999765322 468999998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
....+..+... .+..++.+.+.++|||++++.+
T Consensus 101 t~v~~fL~~~~--~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQREL--RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHHH--HHHHHHHHHhhcCCcEEEEEEE
Confidence 76555544332 2789999999999999988753
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.44 E-value=2e-12 Score=86.41 Aligned_cols=102 Identities=26% Similarity=0.375 Sum_probs=80.3
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~ 139 (197)
+++|+|||.|..+..+.+ ....+++++|++++.++.+++..... ...++++..+|+.+......++||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 589999999999988887 34579999999999999888432211 3457999999988765423578999999998
Q ss_pred CCC-CCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 140 DPV-GPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 140 ~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
.+. ... ...+++.+.+.|+|||.+++.
T Consensus 76 ~~~~~~~----~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVED----LARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhH----HHHHHHHHHHHcCCCCEEEEE
Confidence 655 222 277899999999999999874
No 129
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=1.2e-12 Score=101.66 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=84.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||||||+|.++..+.+.. .+++++|+++.+++.+++++... ..++++..+|+.+......++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhcCCCccEEE
Confidence 345799999999999998888763 68999999999999999876542 23578888998776544457899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+....+..++. ..+++.+.+.|+|||.+++...
T Consensus 120 ~~~~l~~~~~~----~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPDP----ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCCH----HHHHHHHHHHcCCCcEEEEEec
Confidence 97765555443 6789999999999999998654
No 130
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=1e-12 Score=100.76 Aligned_cols=100 Identities=23% Similarity=0.323 Sum_probs=77.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++.. .+++++|+++++++.+++++... ...++++..+|+.+.++ ..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~-~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL----GLHNVSVRHGDGWKGWP-AYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC----CCCceEEEECCcccCCC-cCCCcCEEE
Confidence 456799999999999988777654 48999999999999999987653 23469999999755332 236899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++...+. +.+.+.+.|+|||.+++...
T Consensus 150 ~~~~~~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence 9874322 23567889999999998764
No 131
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=6.3e-13 Score=96.99 Aligned_cols=97 Identities=25% Similarity=0.321 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+++.+|||+|||+|.++..+.+.. .+++++|+++.+++. .+ ......+..+ .....++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhHh
Confidence 566799999999999999887664 499999999999887 11 1111122122 233467999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+....++.+++ ..+++.+.++|||||++++....
T Consensus 84 ~~~~l~~~~d~----~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 84 CNDVLEHLPDP----EEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EESSGGGSSHH----HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHHHHhhcccH----HHHHHHHHHhcCCCCEEEEEEcC
Confidence 99888777654 78999999999999999997643
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.42 E-value=2.2e-12 Score=99.60 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++... ...++++..+|+.+......++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 46799999999999998887754 56999999999999999876542 1126889999988765443478999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
....+...+. ..+++++.+.|+|||.+++...
T Consensus 119 ~~~l~~~~~~----~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 119 MEVLEHVPDP----QAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hhHHHhCCCH----HHHHHHHHHhcCCCcEEEEEec
Confidence 8765555444 6799999999999999888653
No 133
>KOG2904|consensus
Probab=99.40 E-value=6.6e-12 Score=97.24 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=87.0
Q ss_pred HHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE----cchH
Q psy4592 46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV----GDGF 121 (197)
Q Consensus 46 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~d~~ 121 (197)
.+..+....+..+..+||+|||+|+++..+++..+.+++++||.++.++.+|.+|.+... + ..++.+++ +|..
T Consensus 137 Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l-~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 137 VIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--L-SGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--h-cCceEEEecccccccc
Confidence 333333333455668999999999999999998888999999999999999999876532 1 23666663 4433
Q ss_pred HHHhhcCCceeEEEECCCCCCCCC-cccc---------------------cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 122 RFMSEHQQEFDVIITDSSDPVGPA-ESLF---------------------QASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 122 ~~~~~~~~~~D~I~~~~~~~~~~~-~~l~---------------------~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+..+...+++|++++|||.-...+ .++- -..++.-+.|.|+|||.++++..
T Consensus 214 ~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 214 DEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 222223579999999998422111 1110 12366777899999999999876
No 134
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=1.7e-12 Score=104.99 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=82.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+..+|||||||+|.++..+++..+..+++++|. |.+++.++++.... + ..++++++.+|+.+. + .+.+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--g-l~~rv~~~~~d~~~~-~--~~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--G-VADRMRGIAVDIYKE-S--YPEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--C-ccceEEEEecCccCC-C--CCCCCEEE
Confidence 3457999999999999999998888789999998 78999999887642 1 235799999997642 1 23479998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+....|...+.. ...+++++++.|+|||++++.
T Consensus 221 ~~~~lh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANEQL--STIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcCChHH--HHHHHHHHHHhcCCCCEEEEE
Confidence 766555443321 156899999999999999886
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=6.3e-12 Score=101.77 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=77.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+++.+|||+|||+|.++..+++..+ ...++++|+++++++.|++++... ..+++.++++|+.+.+.. .++||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~----g~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL----GIENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCChhhcccc-cCCccEE
Confidence 4567999999999999998887654 247999999999999999987643 235789999998765443 3579999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++...+ +....+.+.|+|||.+++..
T Consensus 154 i~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 9875321 22345678999999988854
No 136
>PRK06202 hypothetical protein; Provisional
Probab=99.39 E-value=1.9e-12 Score=100.61 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 131 (197)
.++.+|||+|||+|.++..+++. ++..+++++|+++++++.|++.... .++++...++.. ++..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~-l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDE-LVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccc-ccccCCCc
Confidence 45679999999999988877642 3346999999999999999887542 345666665433 23345789
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
|+|+++...++.++.. ..+++++++++++ |.+++.
T Consensus 131 D~V~~~~~lhh~~d~~--~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHHLDDAE--VVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeecCChHH--HHHHHHHHHHhcC--eeEEEe
Confidence 9999998887765542 1579999999998 444443
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.39 E-value=5.8e-12 Score=93.33 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++++.+|+.++.. ...+||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEE
Confidence 455699999999999999998873 6999999999999999998753 3589999999987532 234699999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhh--cCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRA--LRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~--LkpgG~l~~~~ 171 (197)
+|+|.+.. ...+..+.+. +.++|.++++-
T Consensus 83 ~n~Py~~~-------~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYNIS-------TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCcccH-------HHHHHHHHhcCCCcceEEEEEEH
Confidence 99986543 2344444432 45888888874
No 138
>KOG1271|consensus
Probab=99.38 E-value=2.7e-12 Score=93.84 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=83.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+..+|||+|||+|.+...+++..-...++++|.++..+++|+..... .++. ..++|.+.|+.+. ....++||+|.-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--~~~~-n~I~f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--DGFS-NEIRFQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--cCCC-cceeEEEeeccCC-cccccceeEEee
Confidence 34499999999999999999865335699999999999998765543 2222 3499999998763 334678999887
Q ss_pred CCCCCC------CCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC
Q psy4592 137 DSSDPV------GPAESLFQASYFELMSRALRPGGIVCSQAGTLW 175 (197)
Q Consensus 137 ~~~~~~------~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~ 175 (197)
..+... .+...+ .-++..+.++|+|||+|++.+++..
T Consensus 143 KGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecCcc
Confidence 655322 122221 3478899999999999999886643
No 139
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=5e-12 Score=97.44 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=78.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.+|||+|||+|.++..+++.. .+++++|+++++++.|++++... + ...++++.++|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~--~-~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGR--D-VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECChhhC----CCCcCEEE
Confidence 356799999999999999988763 68999999999999999887542 1 124799999997653 26899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+....++.+... ....++++.+++++++++.+.
T Consensus 125 ~~~~l~~~~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 865543333222 156889999999877766653
No 140
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.37 E-value=1.4e-12 Score=97.59 Aligned_cols=109 Identities=25% Similarity=0.435 Sum_probs=81.5
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~ 133 (197)
.+.+|||+.||+|.++.+.+.++. .+++.||.++..++..++|+...+ ...+++++..|+...+.. ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCceE
Confidence 567999999999999999988854 799999999999999999987542 123689999998887754 3689999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcCC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAGT 173 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~~ 173 (197)
|++|||...... ..+.++.+. ..|+++|.+++....
T Consensus 118 IflDPPY~~~~~----~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 118 IFLDPPYAKGLY----YEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EEE--STTSCHH----HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EEECCCcccchH----HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 999998654421 155667766 899999999998644
No 141
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=5.8e-12 Score=96.94 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--------CCCCCCCeEEEEcchHHHHhhc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--------VGLSDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~ 127 (197)
+++.+|||+|||.|..+..++..+ .+|++||+++..++.+.+...... ......++++.++|+.++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 345699999999999999998764 799999999999997643211100 0012357899999987753333
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
.++||+|+.....+..+... ...+++.+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~--R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEM--RERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHhHhhCCHHH--HHHHHHHHHHHcCCCCeEEE
Confidence 35899999766554443221 37899999999999986444
No 142
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.35 E-value=6.5e-12 Score=101.28 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=78.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC----c
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ----E 130 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~ 130 (197)
+.+.+|||+|||+|..+..+++..+ ..+++++|+|++|++.+++++..- ....++..+++|+.+.++.... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3457899999999999998887653 478999999999999998876431 0123567789998765432211 2
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
..+++++...+..+... ...+++++++.|+|||.|++-..
T Consensus 139 ~~~~~~gs~~~~~~~~e--~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEE--AVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred eEEEEecccccCCCHHH--HHHHHHHHHHhcCCCCEEEEecc
Confidence 33555555444433221 25799999999999999998653
No 143
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.35 E-value=2.4e-11 Score=102.90 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=79.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D 132 (197)
.++.+|||+|||+|.++..+++.. .+++++|+++++++.|++++... ...+++++++|+.+.+.. ..++||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN----GLDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEEeChHHhhhhhhhhcCCCC
Confidence 345799999999999999988764 68999999999999999987642 224799999999876532 245799
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+|++|||.... .+.++.+.+ ++|++++++..+
T Consensus 370 ~Vi~dPPr~g~-------~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 370 KVLLDPPRAGA-------AEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred EEEECcCCcCh-------HHHHHHHHh-cCCCeEEEEEeC
Confidence 99999974321 345555555 699988887643
No 144
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.35 E-value=1.8e-11 Score=92.20 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=81.8
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~ 133 (197)
.+.+|||++||+|.++.+++.++. ..+++||+++..++.+++++...+ . ..+++++.+|+.+++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~-~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--S-GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--C-cccEEEEehhHHHHHHHhhccCCCceE
Confidence 457999999999999999998854 589999999999999999876531 1 236899999998776531 234899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHH--hhcCCCcEEEEEcC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMS--RALRPGGIVCSQAG 172 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~--~~LkpgG~l~~~~~ 172 (197)
|+.|||..... ..+.++.+. ..|+++|.+++...
T Consensus 125 v~~DPPy~~~~-----~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 125 IYLDPPFFNGA-----LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EEECcCCCCCc-----HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 99999864321 144555553 47999999998753
No 145
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.35 E-value=1.4e-12 Score=103.26 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCeEEEEeCCchH----hHHHHhcCCC-----CccEEEEEcCHHHHHHHHhhcCC-CC-CCC-----------------
Q psy4592 57 NPKKVLIVGGGDGG----VAREVLKHPS-----VESAYLVEIDNRVIEVSKKYLPG-MA-VGL----------------- 108 (197)
Q Consensus 57 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~~~~-~~-~~~----------------- 108 (197)
.+.+|+|+|||+|. ++..+.+..+ ..+|+++|+|+.+++.|++..-. .. ...
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 3444444322 36899999999999999885310 00 000
Q ss_pred ----CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 109 ----SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 109 ----~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-..++++.++|+.+.. ...++||+|++....++.+++. ..+.+++++++|+|||++++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~--~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPT--QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHH--HHHHHHHHHHHhCCCeEEEEEC
Confidence 0136888889986632 2357899999976655543321 2679999999999999999853
No 146
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.34 E-value=2.2e-11 Score=98.84 Aligned_cols=103 Identities=14% Similarity=0.163 Sum_probs=77.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.|+++.... .-++++++++|+.++.....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~----~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAEL----GLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 45799999999999999998753 69999999999999999987653 2247999999998876543457999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
|||.... ..+..+.+ ..++|++.+++..+
T Consensus 247 dPPr~G~------~~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 247 NPPRRGI------GKELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred CCCCCCc------cHHHHHHH-HHcCCCeEEEEECC
Confidence 9973211 13344443 34688776666543
No 147
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.34 E-value=1.3e-11 Score=97.48 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=96.7
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH---HHHhhcCCCCCCCCCCCeEEEE
Q psy4592 41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE---VSKKYLPGMAVGLSDPRLTVHV 117 (197)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~ 117 (197)
..|.++..+++. -.+++|||||||+|+.+..++..++ ..|+|+|.++-..- .+++.+.. ..++...
T Consensus 102 ~KW~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~l- 170 (315)
T PF08003_consen 102 WKWDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFEL- 170 (315)
T ss_pred chHHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC------CccEEEc-
Confidence 455667777653 3668999999999999999998865 68999999886543 33444321 1223333
Q ss_pred cchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC----------C---------CcCh
Q psy4592 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT----------L---------WYSL 178 (197)
Q Consensus 118 ~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~----------~---------~~~~ 178 (197)
....+.++. .++||.|++....++..++ -..++++++.|+|||.+++.+.. | .+-.
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~P----l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi 245 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSP----LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI 245 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCH----HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence 223344555 6789999999988777666 67899999999999999987521 0 0112
Q ss_pred hHHHHHHHHHHhh-CCcccC
Q psy4592 179 DCVGNTLQHCASV-FPRLHC 197 (197)
Q Consensus 179 ~~~~~~~~~~~~~-f~~v~~ 197 (197)
+....+...+++. |.+|+|
T Consensus 246 Ps~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 246 PSVAALKNWLERAGFKDVRC 265 (315)
T ss_pred CCHHHHHHHHHHcCCceEEE
Confidence 4556666677655 777764
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.3e-11 Score=88.86 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
-.++.|+|+|||||.++...+..++ .+++++|+||+.++.+++|.... ..++.+.++|+.++ ..++|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence 3567899999999999988877755 79999999999999999998752 35899999997654 36799999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRAL 161 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~L 161 (197)
+|||+..... + .+..|+..+.++-
T Consensus 114 mNPPFG~~~r-h-aDr~Fl~~Ale~s 137 (198)
T COG2263 114 MNPPFGSQRR-H-ADRPFLLKALEIS 137 (198)
T ss_pred ECCCCccccc-c-CCHHHHHHHHHhh
Confidence 9999755411 1 2366777777664
No 149
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.32 E-value=2.1e-11 Score=94.42 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++.. ..++++|+++++++.|++++...+ ...++++..+|.. ...++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~----~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDLE----SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCch----hccCCcCEEE
Confidence 455799999999999999988764 569999999999999999875421 1147899999942 2346899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
+....++.+... ....++.+.+.+++++++.
T Consensus 133 ~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 877654433322 1567788888775555444
No 150
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=6.7e-11 Score=95.60 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=72.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
++.+|||+|||+|.++..+++.. .+++++|++++|++.++++.+.... .....++++..+|+.+. .++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 45799999999999999988763 6899999999999999988653110 01134688899996542 47899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+....++.++... ..+++.+.+ +.++|.++.
T Consensus 218 ~~~vL~H~p~~~~--~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHYPQDKA--DGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EcCEEEecCHHHH--HHHHHHHHh-hcCCEEEEE
Confidence 8765443333211 346666665 456666553
No 151
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.31 E-value=1.3e-11 Score=91.78 Aligned_cols=98 Identities=22% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I 134 (197)
+++.+|||+|||.|.+...+.+. ..++..|+|++++.+..+.++ .+.++++|+.+.+.. ++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 56689999999999999888776 458999999999988777663 467999999998874 68899999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
|++-+.....++ ++.++++.|+ |...++...
T Consensus 80 IlsqtLQ~~~~P----~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 80 ILSQTLQAVRRP----DEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred ehHhHHHhHhHH----HHHHHHHHHh---cCeEEEEec
Confidence 998766554444 5677777655 555665543
No 152
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.30 E-value=7.7e-11 Score=101.16 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=92.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I 134 (197)
.+...+||||||.|.+...+++..|...+.|+|+....+..+.+..... +..|+.++..|+...... ..++.|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3456999999999999999999888899999999988777665543321 335788999987654433 35789999
Q ss_pred EECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 135 ITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 135 ~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
+.+.|+||. ...++.++.|++.+.+.|+|||.+.+.+...
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 999999995 3456788999999999999999999987653
No 153
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.29 E-value=4.9e-11 Score=98.94 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=79.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.+|||+|||+|.++..++... .++++||+++.+++.|+++.... ..++++++.+|+.+++.....+||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQML----GLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 34699999999999999988653 68999999999999999987653 2247999999998876543356999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|||.. + + ..++++.+. .++|++.+++..
T Consensus 307 DPPr~-G----~-~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRR-G----I-GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCC-C----C-cHHHHHHHH-hcCCCeEEEEEe
Confidence 99842 1 1 145666665 479998888754
No 154
>KOG1541|consensus
Probab=99.29 E-value=4.4e-11 Score=90.01 Aligned_cols=105 Identities=15% Similarity=0.068 Sum_probs=78.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+.-|||||||+|-.+..+...+ ...+++||||.|++.|.+. .. . -.++.+|.-+.+++.+++||.+|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~--e~----e---gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER--EL----E---GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh--hh----h---cCeeeeecCCCCCCCCCccceEEE
Confidence 46799999999998877766554 7899999999999999872 11 1 346777877888888899999988
Q ss_pred CCCCCC-------CCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 137 DSSDPV-------GPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 137 ~~~~~~-------~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
-.+..| ..++..--..||..++.+|++|+..+++..
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 543322 122211114589999999999999999863
No 155
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.29 E-value=6.8e-11 Score=87.75 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=86.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc--eeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE--FDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~D~ 133 (197)
-.+.++||+-+|+|+++.+.+.++. ..++.||.|.......++|....+ ...+.+++..|+..+++....+ ||+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccE
Confidence 3567999999999999999998854 799999999999999999977542 1358999999999877765444 999
Q ss_pred EEECCCCCCCCCcccccHHHHHH--HHhhcCCCcEEEEEcCC
Q psy4592 134 IITDSSDPVGPAESLFQASYFEL--MSRALRPGGIVCSQAGT 173 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~--~~~~LkpgG~l~~~~~~ 173 (197)
|+.|||.+..... ....+.. -...|+|+|.+++....
T Consensus 118 VflDPPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLD---KELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 9999998743221 0222222 35779999999998644
No 156
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.27 E-value=2.5e-10 Score=96.70 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=97.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||+|+|.|+-+.+++... ....++++|+++.-++.+++++..+ .-.++.+...|+..+.......||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----G~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----GVSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCchhhhhhhchhhcCeE
Confidence 466899999999999999988654 3358999999999999999988764 33578899999876543334679999
Q ss_pred EECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592 135 ITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 135 ~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 194 (197)
++|+|.... .++.. ...+++..+.+.|||||+++..+++.. .+..+.+...+-+.+|+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~--~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN--REENQAVCLWLKETYPD 263 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC--HHHHHHHHHHHHHHCCC
Confidence 999986542 11100 125688999999999999988877643 34445555555444443
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.26 E-value=3.6e-10 Score=95.50 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh---cCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~D 132 (197)
.++.+|||+|||+|.++..+++.. .+++++|+++++++.|++++... ...+++++.+|+.+.++. ...+||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~----~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN----GIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh----CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 345799999999999999988764 58999999999999999987653 235799999999886543 235799
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+|++|+|... + ..++++.+.+ ++|++.+++.
T Consensus 365 ~vi~dPPr~G-----~-~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 365 VLLLDPPRKG-----C-AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEEECcCCCC-----C-CHHHHHHHHh-cCCCEEEEEc
Confidence 9999997421 1 1567776654 8998876664
No 158
>KOG2899|consensus
Probab=99.26 E-value=5.4e-11 Score=90.69 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=87.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCC-CCCC-----------------------
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDP----------------------- 111 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~~~----------------------- 111 (197)
..++.+|||||-+|.++..+++..+...+.|+|||+..+..|+++++..... ..-.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999999877778999999999999999986543100 0000
Q ss_pred -------CeEEE----EcchHHHHhhcCCceeEEEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 112 -------RLTVH----VGDGFRFMSEHQQEFDVIITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 112 -------~~~~~----~~d~~~~~~~~~~~~D~I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
++.+. ..+-.+++......||+|++-....|. .+..+ ..||+.+.++|.|||+|++. ..+|.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvE-PQpWk 213 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVE-PQPWK 213 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEc-CCchH
Confidence 11111 111123444446789999986544332 23333 57999999999999999985 34565
Q ss_pred ChhHHHHHHHHHHh
Q psy4592 177 SLDCVGNTLQHCAS 190 (197)
Q Consensus 177 ~~~~~~~~~~~~~~ 190 (197)
.........+.+..
T Consensus 214 sY~kaar~~e~~~~ 227 (288)
T KOG2899|consen 214 SYKKAARRSEKLAA 227 (288)
T ss_pred HHHHHHHHHHHhhc
Confidence 44444444444443
No 159
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.25 E-value=3.2e-11 Score=91.28 Aligned_cols=139 Identities=19% Similarity=0.272 Sum_probs=86.7
Q ss_pred eeecCCCC---CCCCCcEEEEc-CeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEE
Q psy4592 12 PFYPSSSN---RKEFGTALILD-GIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLV 87 (197)
Q Consensus 12 ~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~v 87 (197)
+|..+... .+++|-.+.+| ..+.++++....-.++... ..++..|+|+.||-|.++..+++..+...|+++
T Consensus 57 ~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~-----v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~ 131 (200)
T PF02475_consen 57 VLAGEPRTETIHKENGIRFKVDLSKVYFSPRLSTERRRIANL-----VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAV 131 (200)
T ss_dssp EEEES--SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEE
T ss_pred EEeCCCceEEEEEeCCEEEEEccceEEEccccHHHHHHHHhc-----CCcceEEEEccCCccHHHHHHhhhcCccEEEEe
Confidence 45554422 55666666666 2233333322111222221 256789999999999999999985555789999
Q ss_pred EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592 88 EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167 (197)
Q Consensus 88 e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l 167 (197)
|++|..++.++++.... ... .++.++.+|++++++ ...||.|+++.|.. +.+|+..+.+++++||++
T Consensus 132 d~Np~a~~~L~~Ni~lN--kv~-~~i~~~~~D~~~~~~--~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 132 DLNPDAVEYLKENIRLN--KVE-NRIEVINGDAREFLP--EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ES-HHHHHHHHHHHHHT--T-T-TTEEEEES-GGG-----TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHc--CCC-CeEEEEcCCHHHhcC--ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEE
Confidence 99999999999987653 223 579999999999877 57899999988521 145889999999999987
Q ss_pred E
Q psy4592 168 C 168 (197)
Q Consensus 168 ~ 168 (197)
-
T Consensus 199 h 199 (200)
T PF02475_consen 199 H 199 (200)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.23 E-value=7.3e-11 Score=89.32 Aligned_cols=91 Identities=21% Similarity=0.200 Sum_probs=69.8
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~ 135 (197)
++.+|||+|||+|.++..+++..+ ..++++|+++++++.+++. +++++++|+.+.++ ...++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEEE
Confidence 456999999999999988876543 6789999999999888641 35778888866432 3356899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRP 163 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkp 163 (197)
++.+.++.++. ..+++++.+.+++
T Consensus 81 ~~~~l~~~~d~----~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATRNP----EEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCcCH----HHHHHHHHHhCCe
Confidence 99887766554 6788888877664
No 161
>KOG3010|consensus
Probab=99.22 E-value=4.3e-11 Score=91.22 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=77.1
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
+.++|+|||+|..++.++... .+|+++|++++|++.|++..+.. +......+...+..+++. ..++.|+|++.-
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v~L~g-~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMVDLLG-GEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc---cccCCccccccccccccC-CCcceeeehhhh
Confidence 489999999997777777664 69999999999999999875431 112223333344333322 267999999998
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCc-EEEEEcCC
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGG-IVCSQAGT 173 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG-~l~~~~~~ 173 (197)
+.||... ++|+++++++||++| .+.++...
T Consensus 109 a~HWFdl-----e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 109 AVHWFDL-----ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHhhch-----HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 8888744 679999999999988 77777644
No 162
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=96.69 Aligned_cols=101 Identities=25% Similarity=0.325 Sum_probs=82.4
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
..+|||++||+|..+..+++..+...|+++|++++.++.+++|+... +-.++++.++|+.+++.. .++||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N----~~~~~~v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN----GLENEKVFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence 35899999999999999887655568999999999999999998653 224577999999887753 4679999999
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+ +. + ..+++.+.+.+++||++++..
T Consensus 133 P~---Gs-~----~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF---GS-P----APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC---CC-c----HHHHHHHHHHhcCCCEEEEEe
Confidence 96 21 1 468888888899999999974
No 163
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.22 E-value=2.7e-11 Score=91.62 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=78.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
...++||+|+|-|.++..++... ..+|+.||..+..++.|++++..- .....++.+.-..++.+. ..+||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P~-~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTPE-EGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccCC-CCcEeEEEe
Confidence 34699999999999999877654 379999999999999999887531 223567888888777654 469999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+...+..+..+ .+||+.+++.|+|+|++++--
T Consensus 129 QW~lghLTD~dl--v~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 129 QWCLGHLTDEDL--VAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ES-GGGS-HHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhccCCHHHH--HHHHHHHHHhCcCCcEEEEEe
Confidence 998766666554 579999999999999999864
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.21 E-value=7.1e-12 Score=94.79 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I~~ 136 (197)
-+++||+|||||-.+..+...- .++++||||++|++.|...-- -=.+.++|+..+++ ...++||+|+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 4799999999999888877654 689999999999999977521 12356678877776 35789999997
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.-..++...- +.++..+...|+|||.|.+++..
T Consensus 195 aDVl~YlG~L----e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 ADVLPYLGAL----EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHhhcch----hhHHHHHHHhcCCCceEEEEecc
Confidence 5444443322 66889999999999999998754
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.20 E-value=1.6e-10 Score=93.32 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh---cCCcee
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE---HQQEFD 132 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~---~~~~~D 132 (197)
...++||||||+|.+...++...+..+++++|+|+..++.|++++... .++ ..++++.. .|....... ..++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-PGL-NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-cCC-cCcEEEEEccchhhhhhcccccCCceE
Confidence 457999999999988877766545589999999999999999998752 012 24677754 444333321 256899
Q ss_pred EEEECCCCCCC
Q psy4592 133 VIITDSSDPVG 143 (197)
Q Consensus 133 ~I~~~~~~~~~ 143 (197)
+|++|||++..
T Consensus 192 livcNPPf~~s 202 (321)
T PRK11727 192 ATLCNPPFHAS 202 (321)
T ss_pred EEEeCCCCcCc
Confidence 99999998765
No 166
>KOG3191|consensus
Probab=99.20 E-value=3.7e-10 Score=82.66 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++..++|||||+|..+..+.+. .+.....+.|++|..++..++.... +.-+++.++.|....+.. ++.|++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-----n~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-----NRVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-----cCCccceeehhHHhhhcc--CCccEE
Confidence 45789999999999999888864 4567889999999999988776654 345688999998887765 899999
Q ss_pred EECCCC-CCCCC----------------cccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592 135 ITDSSD-PVGPA----------------ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 189 (197)
Q Consensus 135 ~~~~~~-~~~~~----------------~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (197)
+.|+|. +.... ..-.++.++.++-.+|.|.|++++.... ....+++++.++
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~----~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR----ANKPKEILKILE 182 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh----hcCHHHHHHHHh
Confidence 999974 22211 1112467888899999999999997644 233345555443
No 167
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.19 E-value=6.6e-10 Score=91.46 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---------C
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---------Q 128 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------~ 128 (197)
+.+|||+|||+|.++..+++.. .++++||+++++++.|++++... +..+++++.+|+.++++.. .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN----NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3479999999999999888764 58999999999999999997652 2247999999999877631 1
Q ss_pred ------CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 129 ------QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 129 ------~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+||+|+.|||- .+.. ++.++.+.+ |++++++..
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~~-----~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGLD-----PDTCKLVQA---YERILYISC 311 (353)
T ss_pred ccccccCCCCEEEECCCC-CCCc-----HHHHHHHHc---CCcEEEEEc
Confidence 248999999983 3221 455555544 777777754
No 168
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.19 E-value=5.1e-10 Score=88.39 Aligned_cols=101 Identities=19% Similarity=0.422 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592 20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99 (197)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~ 99 (197)
++.+|..+.+| ......+...+. ..++.+|||||||+|.++..+++.. .+++++|+++.+++.+++
T Consensus 4 ~k~~GQnfl~d---------~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 4 NKKLGQHFLID---------DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRD 69 (258)
T ss_pred CCcCCccccCC---------HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence 34577776655 222234443332 2356799999999999999999873 689999999999999998
Q ss_pred hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592 100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143 (197)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~ 143 (197)
++.. .++++++++|+.+. +. ..||.|++|+|.+..
T Consensus 70 ~~~~------~~~v~ii~~D~~~~-~~--~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 70 DEIA------AGNVEIIEGDALKV-DL--PEFNKVVSNLPYQIS 104 (258)
T ss_pred Hhcc------CCCEEEEEeccccC-Cc--hhceEEEEcCCcccC
Confidence 8752 35899999998763 22 358999999986543
No 169
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.19 E-value=4.1e-10 Score=93.05 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=74.1
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-----------
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH----------- 127 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----------- 127 (197)
.+|||++||+|.++..+++.. .++++||+++.+++.+++|+... ...+++++.+|+.++++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~ 281 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN----GIDNVQIIRMSAEEFTQAMNGVREFNRLKG 281 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh----CCCcEEEEECCHHHHHHHHhhccccccccc
Confidence 579999999999999888764 58999999999999999987642 2247999999999876531
Q ss_pred ----CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 128 ----QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 128 ----~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
..+||+|++|||- .+. .++.++.+.+ |++++++..
T Consensus 282 ~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 282 IDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred ccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 1258999999984 221 1455565554 677766643
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.15 E-value=4.2e-10 Score=90.24 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592 20 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99 (197)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~ 99 (197)
++.+|+.++.| ......++.... ..++.+|||||||+|.++..+++.. .+++++|+|+.+++.+++
T Consensus 11 kk~~GQnFL~d---------~~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~ 76 (294)
T PTZ00338 11 NKKFGQHILKN---------PLVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKK 76 (294)
T ss_pred CCCCCccccCC---------HHHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHH
Confidence 44567666555 222334443332 2455799999999999999988764 589999999999999998
Q ss_pred hcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592 100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143 (197)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~ 143 (197)
++... + ..++++++.+|+.+.. ..+||.|++|+|..+.
T Consensus 77 ~~~~~--~-~~~~v~ii~~Dal~~~---~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 77 RFQNS--P-LASKLEVIEGDALKTE---FPYFDVCVANVPYQIS 114 (294)
T ss_pred HHHhc--C-CCCcEEEEECCHhhhc---ccccCEEEecCCcccC
Confidence 87532 1 1358999999987632 2468999999987655
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=3.8e-10 Score=86.88 Aligned_cols=112 Identities=12% Similarity=0.033 Sum_probs=82.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC--------CCCCCCCCeEEEEcchHHHHh--
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM--------AVGLSDPRLTVHVGDGFRFMS-- 125 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~-- 125 (197)
.++.+||+.|||.|.-+.+++..+ .+|+++|+++..++.+.+..... .......++++.++|+.++-.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 355799999999999999998875 68999999999999876632110 000123579999999887532
Q ss_pred hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...++||+|+--.+....+.. ...++.+.+.++|+|||.+++.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEEEE
Confidence 123589999987766555432 24789999999999999877765
No 172
>KOG1663|consensus
Probab=99.14 E-value=9.6e-10 Score=83.46 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=83.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----cCC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-----HQQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~ 129 (197)
.+++++||||.-||+.+..++... +..+++++|++++..+.+...... .+ -..+++++++++.+.++. ..+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~--ag-v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL--AG-VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh--cc-ccceeeeeecchhhhHHHHHhcCCCC
Confidence 477899999999999888877643 457999999999999998776543 22 346899999999988765 256
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+||++|.|... . .+ ..+++++.+++|+||++++.
T Consensus 149 tfDfaFvDadK---~---nY-~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVDADK---D---NY-SNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEccch---H---HH-HHHHHHHHhhcccccEEEEe
Confidence 99999999842 1 12 47899999999999999885
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.12 E-value=1.3e-09 Score=86.79 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.+|||+|||+|.++..+++.. .+++++|+|+++++.+++++. .++++++++|+.+. +...-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~-~~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKV-DLSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcC-CHHHcCcceEE
Confidence 456799999999999999998875 399999999999999988763 25899999998764 22111259999
Q ss_pred ECCCCCCC
Q psy4592 136 TDSSDPVG 143 (197)
Q Consensus 136 ~~~~~~~~ 143 (197)
+|+|....
T Consensus 111 ~NlPY~is 118 (272)
T PRK00274 111 ANLPYNIT 118 (272)
T ss_pred EeCCccch
Confidence 99985443
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.11 E-value=1.1e-09 Score=86.33 Aligned_cols=76 Identities=26% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee---
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD--- 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D--- 132 (197)
.++.+|||+|||+|.++..+++.. ..++++|+|+.+++.+++++.. .++++++.+|+.+... .++|
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 456799999999999999999876 4699999999999999987642 3589999999876322 2466
Q ss_pred EEEECCCCCC
Q psy4592 133 VIITDSSDPV 142 (197)
Q Consensus 133 ~I~~~~~~~~ 142 (197)
.|++|+|.+.
T Consensus 97 ~vvsNlPy~i 106 (253)
T TIGR00755 97 KVVSNLPYNI 106 (253)
T ss_pred eEEEcCChhh
Confidence 9999987543
No 175
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=3.7e-10 Score=91.00 Aligned_cols=119 Identities=22% Similarity=0.200 Sum_probs=89.4
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFR 122 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~ 122 (197)
.+.+..++.. +.+..|||--||||++..++...+ .+++|+|++..|++-|+.|+..- .-....+... |+..
T Consensus 186 AR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y----~i~~~~~~~~~Da~~ 257 (347)
T COG1041 186 ARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYY----GIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhh----CcCceeEEEeccccc
Confidence 4445444433 667799999999999999887664 79999999999999999998753 2234555555 8766
Q ss_pred HHhhcCCceeEEEECCCCCCCC----C--cccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 123 FMSEHQQEFDVIITDSSDPVGP----A--ESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 123 ~~~~~~~~~D~I~~~~~~~~~~----~--~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++....++|.|+.|||..... . ..|+ .++++.+.++|++||++++.+.
T Consensus 258 -lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 -LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHHHHHHhhcCcEEEEecC
Confidence 445445799999999864431 1 2233 7799999999999999999764
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=3.3e-09 Score=85.95 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=112.2
Q ss_pred ceeeeeeec--eeecCC-CC--CCCCCcEEEEc-CeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHh
Q psy4592 3 VSLSLQVEE--PFYPSS-SN--RKEFGTALILD-GIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVL 76 (197)
Q Consensus 3 ~~~~~~~~~--~~~~~~-~~--~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~ 76 (197)
+..++++.+ +|+.+. ++ .+++|-.+.+| ..++++++....-.++.... ..+.+|+|+-+|-|.++..++
T Consensus 133 v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v-----~~GE~V~DmFAGVGpfsi~~A 207 (341)
T COG2520 133 VAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELV-----KEGETVLDMFAGVGPFSIPIA 207 (341)
T ss_pred cCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhh-----cCCCEEEEccCCcccchhhhh
Confidence 334444443 666666 33 77888667777 45666655533323333222 457899999999999999999
Q ss_pred cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHH
Q psy4592 77 KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFEL 156 (197)
Q Consensus 77 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~ 156 (197)
+.... .|+++|+||..++.+++|+..+ .. ...++.+++|+++..+.. ..+|-|+++.+. . +.+|+..
T Consensus 208 k~g~~-~V~A~diNP~A~~~L~eNi~LN--~v-~~~v~~i~gD~rev~~~~-~~aDrIim~~p~----~----a~~fl~~ 274 (341)
T COG2520 208 KKGRP-KVYAIDINPDAVEYLKENIRLN--KV-EGRVEPILGDAREVAPEL-GVADRIIMGLPK----S----AHEFLPL 274 (341)
T ss_pred hcCCc-eEEEEecCHHHHHHHHHHHHhc--Cc-cceeeEEeccHHHhhhcc-ccCCEEEeCCCC----c----chhhHHH
Confidence 88653 4999999999999999998763 22 235899999999876653 789999998863 1 2568899
Q ss_pred HHhhcCCCcEEEEEcCCC
Q psy4592 157 MSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 157 ~~~~LkpgG~l~~~~~~~ 174 (197)
+.+.+++||.+-++...+
T Consensus 275 A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 275 ALELLKDGGIIHYYEFVP 292 (341)
T ss_pred HHHHhhcCcEEEEEeccc
Confidence 999999999998876543
No 177
>KOG1661|consensus
Probab=99.10 E-value=3e-10 Score=84.94 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=87.4
Q ss_pred hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCC------CCCCCC
Q psy4592 40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMA------VGLSDP 111 (197)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~~~ 111 (197)
...|..++..+.... .++.+.||+|+|+|+++..++.. .+.....+||.-|+.++.+++++..+- ..++..
T Consensus 66 p~mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 66 PHMHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred hHHHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 445555555554211 46689999999999999887742 222344899999999999999876542 123456
Q ss_pred CeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 112 RLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 112 ~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++.++.+|.+...+. ..+||.|++.+.. .+.-+.+.+.|++||.+++...
T Consensus 145 ~l~ivvGDgr~g~~e-~a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAE-QAPYDAIHVGAAA----------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEeCCccccCCc-cCCcceEEEccCc----------cccHHHHHHhhccCCeEEEeec
Confidence 789999999876554 5799999998643 2233777889999999998654
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.09 E-value=3.6e-10 Score=86.91 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=79.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC-CC----CC---CCCCCeEEEEcchHHHHhhc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG-MA----VG---LSDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~-~~----~~---~~~~~~~~~~~d~~~~~~~~ 127 (197)
+.+.+||+.|||.|.-...++..+ .+|+|+|+++..++.+.+.... .. .. ....++++.++|..++-+..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 455699999999999999999874 7999999999999988432111 00 00 12347899999987744433
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
.++||+|+--.+....+.. ..+++.+.+.++|+|||.+++
T Consensus 114 ~g~fD~iyDr~~l~Alpp~--~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPE--MRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp HHSEEEEEECSSTTTS-GG--GHHHHHHHHHHCEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHH--HHHHHHHHHHHHhCCCCcEEE
Confidence 4589999988776665432 248899999999999999433
No 179
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.07 E-value=1.6e-09 Score=89.58 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=84.5
Q ss_pred CeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
.+|||+.||+|..+..+++.. +...|+++|++|+.++.+++|...+ ...++++.++|+..++.....+||+|+.|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N----~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN----SVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 589999999999999988763 4468999999999999999998653 22468999999999887655689999999
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+ ..+ ..+++.+.+.++++|.+.+..
T Consensus 122 Pf--Gs~------~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PF--GTP------APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC--CCc------HHHHHHHHHhcccCCEEEEEe
Confidence 94 221 469999999999999999984
No 180
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.05 E-value=8.1e-09 Score=74.71 Aligned_cols=108 Identities=21% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---hh-cCCc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---SE-HQQE 130 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~~ 130 (197)
..+.-||++|.|||-++.+++++ .+...+++||.+++......+.++ .++++.+|+...- .. .+..
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCe
Confidence 56679999999999999998875 345799999999999998888764 4568999987643 12 3668
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
||.|++..|.-..+... +-+.++++...|.+||.++.-...|
T Consensus 118 ~D~viS~lPll~~P~~~--~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 118 FDSVISGLPLLNFPMHR--RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeeEEeccccccCcHHH--HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 99999998764443321 3679999999999999998876554
No 181
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.6e-09 Score=84.57 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY 100 (197)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~ 100 (197)
+.+|+++.+|.. ....+...... .++..|||||+|.|.++..+++.. ..+++||+|+.+++..++.
T Consensus 6 K~~GQnFL~d~~---------v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~ 71 (259)
T COG0030 6 KRLGQNFLIDKN---------VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKER 71 (259)
T ss_pred CCcccccccCHH---------HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHh
Confidence 557877766622 23444443332 346799999999999999999886 5799999999999999988
Q ss_pred cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC
Q psy4592 101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143 (197)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~ 143 (197)
+.. .++++++++|+...-...-..++.|++|.|...+
T Consensus 72 ~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 72 FAP------YDNLTVINGDALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred ccc------ccceEEEeCchhcCcchhhcCCCEEEEcCCCccc
Confidence 752 4689999999876422211168999999987665
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.04 E-value=5.4e-10 Score=83.54 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCCCcc---------EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPSVES---------AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS 125 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~---------v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (197)
.+++..|||--||+|.+..+.+....... +.++|+++++++.|++|+... +. ...+.+.+.|+.+..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~-~~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GV-EDYIDFIQWDARELP- 101 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T--CGGEEEEE--GGGGG-
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--cc-CCceEEEecchhhcc-
Confidence 35667999999999999988765433344 899999999999999997642 22 246899999988754
Q ss_pred hcCCceeEEEECCCCCCCCC-----cccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 126 EHQQEFDVIITDSSDPVGPA-----ESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~~~-----~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
...+++|.|++|+|...... ..++ .++++++.++|++..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHHHHCHSTTCEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHHHHHHCCCCEEEEEE
Confidence 44578999999998654311 2233 56889999999995555553
No 183
>KOG2361|consensus
Probab=99.01 E-value=4.9e-10 Score=85.53 Aligned_cols=107 Identities=23% Similarity=0.238 Sum_probs=79.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hh--cCCce
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SE--HQQEF 131 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~~ 131 (197)
.+.+||++|||.|....-+++..+. ..+.++|.+|..++..+++... +..++...+.|+...- .. ..+++
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 3448999999999988888876555 7999999999999999998653 4456666666654321 21 35789
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
|+|++-......++.. ....+++++++|||||.+++-
T Consensus 146 D~it~IFvLSAi~pek--~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK--MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEeccChHH--HHHHHHHHHHHhCCCcEEEEe
Confidence 9998866554433322 167899999999999999985
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.00 E-value=8.6e-10 Score=86.19 Aligned_cols=99 Identities=25% Similarity=0.262 Sum_probs=78.6
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
....+|+|||+|.|.++..+++..|..+++..|+ |.+++.+++ . ++++++.+|.. ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~--------~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--A--------DRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--T--------TTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--c--------cccccccccHH---hhhcc-cccee
Confidence 4557999999999999999999888899999999 889988888 1 48999999975 22233 99999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCC--cEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPG--GIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg--G~l~~~~ 171 (197)
+....|..++.. ...+++++++.|+|| |++++.-
T Consensus 164 l~~vLh~~~d~~--~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDWSDED--CVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS-HHH--HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eehhhhhcchHH--HHHHHHHHHHHhCCCCCCeEEEEe
Confidence 988877765543 267999999999999 9988864
No 185
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.99 E-value=2.4e-09 Score=80.67 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=90.3
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh----hcCCceeEEE
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----EHQQEFDVII 135 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~D~I~ 135 (197)
+|||||+|||..+.+.+...+..+..--|.++......+.+....+...-.+.+.+-..+....+. ...++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999888788888899988876665554321100011223332222111111 1246899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC---CcChhHHHHHHHHHHhhCCc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL---WYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~~~~~~~f~~ 194 (197)
+-...|+.+-.. .+.+|+.+.++|++||.|+++..-. .+..+....+-..+++.-|.
T Consensus 108 ~~N~lHI~p~~~--~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~ 167 (204)
T PF06080_consen 108 CINMLHISPWSA--VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE 167 (204)
T ss_pred ehhHHHhcCHHH--HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC
Confidence 988888876543 3789999999999999999986321 23456777777888776554
No 186
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.1e-08 Score=84.36 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=82.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I 134 (197)
...++||+-||.|.++..+++.. .+|+++|++++.++.|+++...+ ...|++++.+|++++.... ...+|.|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n----~i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAAN----GIDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 44789999999999999998664 79999999999999999998763 3356999999999987764 3578999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+.|||-.... +++++.+.+ ++|..+++++.+.
T Consensus 367 vvDPPR~G~~------~~~lk~l~~-~~p~~IvYVSCNP 398 (432)
T COG2265 367 VVDPPRAGAD------REVLKQLAK-LKPKRIVYVSCNP 398 (432)
T ss_pred EECCCCCCCC------HHHHHHHHh-cCCCcEEEEeCCH
Confidence 9999743331 456666554 5888888876443
No 187
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=9.6e-09 Score=84.62 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=88.5
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCc
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQE 130 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~ 130 (197)
..++.+|||++++.|+=+.+++....+ ..|+++|+++.-++..++++... ...++.+.+.|+....... .++
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl----G~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL----GVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc----CCCceEEEecccccccccccccCc
Confidence 455689999999999999888876543 45699999999999999988765 3456788888876543332 236
Q ss_pred eeEEEECCCCCCC----CCccc--------------ccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 131 FDVIITDSSDPVG----PAESL--------------FQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 131 ~D~I~~~~~~~~~----~~~~l--------------~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
||.|++|+|.... .++.. ++.++++.+.+.|||||.++..+++...
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999999986442 11111 1356899999999999999999887544
No 188
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=1.4e-09 Score=79.85 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=62.2
Q ss_pred EEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCC
Q psy4592 85 YLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPG 164 (197)
Q Consensus 85 ~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg 164 (197)
+++|+|++|++.|+++.+..... ...+++++++|+.+ ++..+++||+|++....++.++. .+++++++++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~----~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDR----LRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCH----HHHHHHHHHHcCcC
Confidence 48999999999998765421000 12479999999876 45556789999998766665554 78999999999999
Q ss_pred cEEEEEc
Q psy4592 165 GIVCSQA 171 (197)
Q Consensus 165 G~l~~~~ 171 (197)
|.+++..
T Consensus 75 G~l~i~d 81 (160)
T PLN02232 75 SRVSILD 81 (160)
T ss_pred eEEEEEE
Confidence 9998764
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.98 E-value=1.5e-09 Score=80.65 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH--h-hcCCcee
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM--S-EHQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~~~D 132 (197)
.++++|||||||+|..+..+++..+..+|+..|.++ .++.++.|...+.. ....++++...|..+.. . ....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 456799999999999988888774557999999999 99999998765311 12356777776543322 1 1245899
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
+|+..=..+.. .. -+.+++.+.++|+++|.+++... .+.+..+.+++.+++
T Consensus 122 ~IlasDv~Y~~---~~-~~~L~~tl~~ll~~~~~vl~~~~---~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 122 VILASDVLYDE---EL-FEPLVRTLKRLLKPNGKVLLAYK---RRRKSEQEFFDRLKK 172 (173)
T ss_dssp EEEEES--S-G---GG-HHHHHHHHHHHBTT-TTEEEEEE----S-TGGCHHHHHH--
T ss_pred EEEEecccchH---HH-HHHHHHHHHHHhCCCCEEEEEeC---EecHHHHHHHHHhhh
Confidence 99984433222 22 27799999999999999666432 223334555555544
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.94 E-value=1.9e-09 Score=91.11 Aligned_cols=107 Identities=25% Similarity=0.366 Sum_probs=72.9
Q ss_pred CCeEEEEeCCchHhHHHHhcCC----CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP----SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.+.|+|+|||+|-+....++.. ...+|++||.++.+...+++.... ++. .++++++++|++++-. ++++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--n~w-~~~V~vi~~d~r~v~l--pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--NGW-GDKVTVIHGDMREVEL--PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--TTT-TTTEEEEES-TTTSCH--SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--cCC-CCeEEEEeCcccCCCC--CCceeE
Confidence 4689999999999987665543 347999999999877666543221 111 3589999999887533 369999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
||+-.....+.+. + .++.+..+.+.|||||.++=+.
T Consensus 262 IVSElLGsfg~nE-l-~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 262 IVSELLGSFGDNE-L-SPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp EEE---BTTBTTT-S-HHHHHHHGGGGEEEEEEEESSE
T ss_pred EEEeccCCccccc-c-CHHHHHHHHhhcCCCCEEeCcc
Confidence 9998875444333 3 3778999999999999988544
No 191
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.92 E-value=3.9e-08 Score=76.37 Aligned_cols=95 Identities=23% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+..++||||+|.|.++..++... .++++.|+|+.|....++. ..+++ |..+ +...+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl--~~~~-w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVL--DIDD-WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEE--ehhh-hhccCCceEEEee
Confidence 45689999999999999998766 5899999999997766552 22333 2223 3334568999998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-....-...+ ..+++.+++.|+|+|++++..
T Consensus 158 LNvLDRc~~P----~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCDRP----LTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccCCH----HHHHHHHHHHhCCCCEEEEEE
Confidence 5543333233 579999999999999988864
No 192
>KOG2940|consensus
Probab=98.91 E-value=1.6e-09 Score=82.30 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=84.8
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
-..++|||||.|.+...+.... ..+++.+|.+..|++.++..-. ..-......+| +++++....++|+|++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd------p~i~~~~~v~D-EE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD------PSIETSYFVGD-EEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC------CceEEEEEecc-hhcccccccchhhhhhh
Confidence 3589999999999999988774 6799999999999999887532 12346677888 67788878899999999
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...||..+- +..+.+++..|||+|.|+-..
T Consensus 145 lslHW~NdL----Pg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 145 LSLHWTNDL----PGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhccC----chHHHHHHHhcCCCccchhHH
Confidence 999998654 678899999999999998654
No 193
>KOG2352|consensus
Probab=98.90 E-value=4.2e-09 Score=87.93 Aligned_cols=133 Identities=26% Similarity=0.366 Sum_probs=103.0
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc------CCc
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH------QQE 130 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~ 130 (197)
.+..+|.+|.|.|.+...+....+..++++||++|++++.|++++... ...+.+++..|..+++... ...
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~----q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM----QSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh----hhhhhhhhHhhchHHHHHHhhccccccC
Confidence 356899999999999998888778789999999999999999998754 3346788888888877652 348
Q ss_pred eeEEEECCCC--CC---CCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592 131 FDVIITDSSD--PV---GPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195 (197)
Q Consensus 131 ~D~I~~~~~~--~~---~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v 195 (197)
||+++.|.-. .+ .+.+.+..+.++..++.+|.|.|+|.+|..+ .+......+...++.+||..
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~~~~~~l~~vf~~l 438 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKDEVLMNLAKVFPQL 438 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhHHHHHhhhhhhHHH
Confidence 9999996532 22 2555566688999999999999999998744 33455566677777777753
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.88 E-value=2.4e-09 Score=87.11 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------CCCeEEEEcchHH-HHhh--c
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------DPRLTVHVGDGFR-FMSE--H 127 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~d~~~-~~~~--~ 127 (197)
++.+|||||||-|+-..-+.+. +...++++|++++.++.|+++......... .-...++.+|... .+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5679999999988765555554 347999999999999999887621100000 1245667777542 1211 1
Q ss_pred --CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 128 --QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 128 --~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
..+||+|-+-...|..-...-....+++++.+.|+|||+|+..+.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999888776333222366999999999999999987533
No 195
>KOG1500|consensus
Probab=98.87 E-value=1.8e-08 Score=80.55 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=79.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
...+.|||+|||+|.++...+..+ ..+|++||.++ |.+.|++...-. +-.+++.++.|.+++. .. +++.|+|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N---~~~~rItVI~GKiEdi-eL-PEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASN---NLADRITVIPGKIEDI-EL-PEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcC---CccceEEEccCccccc-cC-chhccEEE
Confidence 467899999999999998877775 47999999865 888998876531 2346899999987763 22 47899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+.|.....-+.+. -+-+-.+++-|||+|.++-..+.
T Consensus 249 SEPMG~mL~NERM--LEsYl~Ark~l~P~GkMfPT~gd 284 (517)
T KOG1500|consen 249 SEPMGYMLVNERM--LESYLHARKWLKPNGKMFPTVGD 284 (517)
T ss_pred eccchhhhhhHHH--HHHHHHHHhhcCCCCcccCcccc
Confidence 9986444333322 22334567999999998866543
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.84 E-value=5.9e-09 Score=76.19 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=54.9
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCc-eeEEEEC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQE-FDVIITD 137 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~-~D~I~~~ 137 (197)
.|+|+.||.|+.+..+++.. .+|++||+||..++.|+.|..--+ ..++++++++|..+.++.. ... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999886 689999999999999999975421 2468999999999977653 222 8999999
Q ss_pred CC
Q psy4592 138 SS 139 (197)
Q Consensus 138 ~~ 139 (197)
||
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 96
No 197
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.84 E-value=6.9e-09 Score=82.96 Aligned_cols=135 Identities=14% Similarity=0.173 Sum_probs=96.3
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCcee
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFD 132 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D 132 (197)
..++..|||++++.|+=+..++.... ...+++.|+++.-+...+.++... ...++.+...|+....+.. ...||
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccc
Confidence 34557999999999998888776433 579999999999999998887654 3457888889998875443 34699
Q ss_pred EEEECCCCCCC----CCcc--------------cccHHHHHHHHhhc----CCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 133 VIITDSSDPVG----PAES--------------LFQASYFELMSRAL----RPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 133 ~I~~~~~~~~~----~~~~--------------l~~~~~~~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
.|++|+|.... .++. ....+.++.+.+.+ ||||+++..+++... +....+.+.+-+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV~~fl~ 236 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVVEKFLK 236 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHHHHHHH
Confidence 99999986442 1111 01356899999999 999999999877433 333444444444
Q ss_pred hCCcc
Q psy4592 191 VFPRL 195 (197)
Q Consensus 191 ~f~~v 195 (197)
.+|++
T Consensus 237 ~~~~~ 241 (283)
T PF01189_consen 237 RHPDF 241 (283)
T ss_dssp HSTSE
T ss_pred hCCCc
Confidence 44443
No 198
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.83 E-value=5e-08 Score=72.91 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=68.2
Q ss_pred hhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592 40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118 (197)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 118 (197)
.+-..++......+....+.+|||+||++|+++..+.+.. +...++++|+.+.- ..+++..+++
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------------~~~~~~~i~~ 70 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------------PLQNVSFIQG 70 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------------S-TTEEBTTG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------------cccceeeeec
Confidence 3444566666653422256899999999999999999876 45799999998761 0122333333
Q ss_pred chH-----HHHhh----cCCceeEEEECCCCCCCCCcccc-------cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 119 DGF-----RFMSE----HQQEFDVIITDSSDPVGPAESLF-------QASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 119 d~~-----~~~~~----~~~~~D~I~~~~~~~~~~~~~l~-------~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|.. +.+.. ..+++|+|++|............ ....+.-+.+.|+|||.+++-...
T Consensus 71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 322 11221 23689999999854333221111 122344556889999988886533
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=1.4e-07 Score=73.01 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=71.9
Q ss_pred cEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH-HHhhcCC
Q psy4592 25 TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV-SKKYLPG 103 (197)
Q Consensus 25 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~ 103 (197)
..+.+++...+.++..+.+..++..+.. ..+++.|||+|||+|.++..+++.+ ..+++++|++++++.. .+++
T Consensus 45 d~I~v~~~~~~vsr~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~--- 118 (228)
T TIGR00478 45 AKIELLQNPLFVSRGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQD--- 118 (228)
T ss_pred CEEeccCccchhhhhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcC---
Confidence 3444444332334444555555555542 2456799999999999999998873 4799999999987765 3332
Q ss_pred CCCCCCCCCe-EEEEcchH-----HHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 104 MAVGLSDPRL-TVHVGDGF-----RFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 104 ~~~~~~~~~~-~~~~~d~~-----~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++ .+...|++ +.. ..-..+|++++.. ...+..+.+.|+| |.+++-.
T Consensus 119 -------~~v~~~~~~ni~~~~~~~~~-~d~~~~DvsfiS~------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 119 -------ERVKVLERTNIRYVTPADIF-PDFATFDVSFISL------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -------CCeeEeecCCcccCCHhHcC-CCceeeeEEEeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence 121 12222333 211 1112456555333 2367889999999 8766543
No 200
>KOG3420|consensus
Probab=98.81 E-value=1.3e-08 Score=72.06 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
-.++.++|+|||+|-+..+.... +...+.|+||+|+.++.+.+|.... .-++++.++|+.+.... .+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEf-----EvqidlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEF-----EVQIDLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHh-----hhhhheeeeeccchhcc-CCeEeeEE
Confidence 46789999999999988665544 4479999999999999999987653 23568899998765443 47899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALR 162 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lk 162 (197)
.|+|+...... .+-+|+..+.++.+
T Consensus 120 iNppFGTk~~~--aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTKKKG--ADMEFVSAALKVAS 144 (185)
T ss_pred ecCCCCccccc--ccHHHHHHHHHHHH
Confidence 99987664332 23567776666655
No 201
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.81 E-value=3.7e-08 Score=81.17 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=65.6
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-----------
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----------- 126 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 126 (197)
+.+|||+.||.|.++..++... .+|++||+++++++.|++++... +-.|++++.+++.++...
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N----~i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN----GIDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT----T--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc----CCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 3489999999999999998875 69999999999999999997653 346899999887654221
Q ss_pred ----cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 127 ----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 127 ----~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
....+|+|+.|||-.... +..++.+.+ + ..++..+++|
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~~------~~~~~~~~~---~-~~ivYvSCnP 312 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGLD------EKVIELIKK---L-KRIVYVSCNP 312 (352)
T ss_dssp GS-GGCTTESEEEE---TT-SC------HHHHHHHHH---S-SEEEEEES-H
T ss_pred hhhhhhcCCCEEEEcCCCCCch------HHHHHHHhc---C-CeEEEEECCH
Confidence 123689999999743321 445555543 2 2666666664
No 202
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.79 E-value=2.1e-08 Score=86.77 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCC--------CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH----
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPS--------VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---- 124 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 124 (197)
...+|||.|||+|.+...+.+..+ ...++++|+++..++.++.++... .....++.+.|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~----~~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF----ALLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc----CCCCceeeeccccccccccc
Confidence 346999999999999888775321 257899999999999999886542 1123455555533211
Q ss_pred hhcCCceeEEEECCCCCCCC-Cc-c-----------------------------------------cccHHHHHHHHhhc
Q psy4592 125 SEHQQEFDVIITDSSDPVGP-AE-S-----------------------------------------LFQASYFELMSRAL 161 (197)
Q Consensus 125 ~~~~~~~D~I~~~~~~~~~~-~~-~-----------------------------------------l~~~~~~~~~~~~L 161 (197)
....++||+|+.|||..... .. . ++..-|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 11235899999999853311 00 0 00001346788999
Q ss_pred CCCcEEEEEcCCCCcChhHHHHHHHH
Q psy4592 162 RPGGIVCSQAGTLWYSLDCVGNTLQH 187 (197)
Q Consensus 162 kpgG~l~~~~~~~~~~~~~~~~~~~~ 187 (197)
++||++.+.+...+......+.+.+.
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~~ 212 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLREY 212 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHH
Confidence 99999998876666544444444443
No 203
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.4e-08 Score=72.67 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=88.4
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
.++.....++ .++..|+|||+..|+|+..+++..+ ...|++||+.|-- ..+++.++++|+.+
T Consensus 34 ~el~~k~~i~--~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~ 96 (205)
T COG0293 34 LELNEKFKLF--KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITD 96 (205)
T ss_pred HHHHHhcCee--cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccC
Confidence 4444444322 5678999999999999998887543 3459999998722 12458888888763
Q ss_pred H-----Hhh--cCCceeEEEECCCCCCCCCccc-------ccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHH
Q psy4592 123 F-----MSE--HQQEFDVIITDSSDPVGPAESL-------FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 188 (197)
Q Consensus 123 ~-----~~~--~~~~~D~I~~~~~~~~~~~~~l-------~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 188 (197)
- +.. ...++|+|++|+.-........ .....++-+..+|+|||.|++- .+..+....+++.+
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~ 172 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKAL 172 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHH
Confidence 2 111 1345799999986433211110 1133556667899999999984 34456777888888
Q ss_pred HhhCCccc
Q psy4592 189 ASVFPRLH 196 (197)
Q Consensus 189 ~~~f~~v~ 196 (197)
++.|..|+
T Consensus 173 ~~~F~~v~ 180 (205)
T COG0293 173 RRLFRKVK 180 (205)
T ss_pred HHhhceeE
Confidence 88888775
No 204
>KOG1709|consensus
Probab=98.78 E-value=5.9e-08 Score=73.09 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=83.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I 134 (197)
-++.+||.+|.|-|.+...+.+..+ ...+.||..|.+++..+.+-.. +..|+.+..+--.+.++. .++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 5778999999999999988888766 5777999999999999987543 456788887776666655 35679999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+-|.+.+...+- ..+.+.+.++|||+|++-+-
T Consensus 174 ~yDTy~e~yEdl----~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELYEDL----RHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHHHHH----HHHHHHHhhhcCCCceEEEe
Confidence 999875443332 57889999999999998763
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.77 E-value=6.1e-09 Score=84.39 Aligned_cols=116 Identities=23% Similarity=0.286 Sum_probs=73.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-------CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-------PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH- 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~- 127 (197)
.++.+|+|-+||+|++..++.+. ....+++|+|+++.++.+|+.++... +....+..+..+|........
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--GIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--THHCBGCEEEES-TTTSHSCTS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--cccccccccccccccccccccc
Confidence 44568999999999998877652 24479999999999999998764321 112234568888865432222
Q ss_pred CCceeEEEECCCCCCC--CCccc---------------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 128 QQEFDVIITDSSDPVG--PAESL---------------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~--~~~~l---------------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
..+||+|++|||.... ....+ ..-.|+..+.+.|++||++.+.+..
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4689999999986432 11110 0124889999999999997776543
No 206
>KOG1499|consensus
Probab=98.76 E-value=1.7e-08 Score=81.22 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=75.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+.|||+|||+|.++...++.+. .++++||.+. +++.|++.+.. +++. ..++++.+.+++. .-+.++.|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~--N~~~-~ii~vi~gkvEdi-~LP~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKD--NGLE-DVITVIKGKVEDI-ELPVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHh--cCcc-ceEEEeecceEEE-ecCccceeEEe
Confidence 3568999999999999999998864 7999999876 44888776654 2222 4699999988775 32358999999
Q ss_pred ECCCCCCCCCcccccHHHHHHH----HhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELM----SRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~----~~~LkpgG~l~~~~ 171 (197)
+.+.-++. +-+..++.+ -+-|+|||.++=..
T Consensus 133 SEWMGy~L-----l~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 133 SEWMGYFL-----LYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred ehhhhHHH-----HHhhhhhhhhhhhhhccCCCceEcccc
Confidence 98864332 113333333 37899999987543
No 207
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.75 E-value=9.2e-08 Score=76.58 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=67.5
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
.+++..+.. .++..++|.+||.|+.+..+++..+ ..+++++|.||++++.+++.+.. ..+++++++|..+
T Consensus 9 ~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~ 79 (296)
T PRK00050 9 DEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHH
Confidence 444544432 3456999999999999999998764 57999999999999999987642 2489999999988
Q ss_pred HHhhcCC---ceeEEEECC
Q psy4592 123 FMSEHQQ---EFDVIITDS 138 (197)
Q Consensus 123 ~~~~~~~---~~D~I~~~~ 138 (197)
+.....+ ++|.|++|.
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 7544322 799999985
No 208
>KOG0820|consensus
Probab=98.74 E-value=6.8e-08 Score=75.17 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
++++.||++|.|||.++..+++.. .+|+++|+||.|+...++..+.. . ...+++++.+|. +......||.+|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gt--p-~~~kLqV~~gD~---lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGT--P-KSGKLQVLHGDF---LKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCC--C-ccceeeEEeccc---ccCCCcccceee
Confidence 677899999999999999999885 79999999999999888876532 1 235899999996 444346799999
Q ss_pred ECCCCCCC
Q psy4592 136 TDSSDPVG 143 (197)
Q Consensus 136 ~~~~~~~~ 143 (197)
+|.|..++
T Consensus 129 sNlPyqIS 136 (315)
T KOG0820|consen 129 SNLPYQIS 136 (315)
T ss_pred ccCCcccc
Confidence 99886554
No 209
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.73 E-value=1.7e-07 Score=73.84 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=91.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCC--ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSV--ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~ 131 (197)
..+-+||||.||.|.....+....+. .++...|.+|.-++..++.+... ++. ..++|.++|+.+.-.. -..+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~-~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLE-DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCc-cceEEEecCCCCHhHhhccCCCC
Confidence 45679999999999888777765443 79999999999999998877642 222 3459999998775332 24567
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
|++++..-....+++.+. ...++.+.+++.|||+++.. +.||+ +.++-+-..+.+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv-~~sl~gl~~al~pgG~lIyT-gQPwH--PQle~IAr~Lts 265 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLV-RRSLAGLARALEPGGYLIYT-GQPWH--PQLEMIARVLTS 265 (311)
T ss_pred CEEEEecchhhCCcHHHH-HHHHHHHHHHhCCCcEEEEc-CCCCC--cchHHHHHHHhc
Confidence 998887765555555443 56788899999999999874 45666 344444444443
No 210
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.71 E-value=3e-07 Score=68.85 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=73.2
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS 139 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~ 139 (197)
+++|||+|.|.=+.-++-..|..+++.+|....-+...+.-...+ +-+|++++++.+++ .....+||+|++-+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeehh
Confidence 899999999965555554456689999999987766665544332 34589999999887 344679999998875
Q ss_pred CCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 140 DPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
. +. ..+++-+...|++||.+++.-+.
T Consensus 125 ~----~l----~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 125 A----PL----DKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp S----SH----HHHHHHHGGGEEEEEEEEEEESS
T ss_pred c----CH----HHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 11 56889999999999999987654
No 211
>KOG2915|consensus
Probab=98.71 E-value=8e-08 Score=74.75 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=89.7
Q ss_pred ccCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCC
Q psy4592 52 LCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQ 129 (197)
Q Consensus 52 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 129 (197)
++...++.+|++-|+|+|+++.++++. .|..+++..|..+.-.+.|++.|... + -.+++++.+-|+...= .....
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--g-i~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--G-IGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--C-CCcceEEEEeecccCCcccccc
Confidence 344567789999999999999999875 45679999999998888888877652 2 3468999988865421 11256
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCc-EEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
++|+|+.|.|.||..- ..++++||.+| +++..+ |+. +++++..+.+++.
T Consensus 177 ~aDaVFLDlPaPw~Ai---------Pha~~~lk~~g~r~csFS--PCI--EQvqrtce~l~~~ 226 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAI---------PHAAKILKDEGGRLCSFS--PCI--EQVQRTCEALRSL 226 (314)
T ss_pred ccceEEEcCCChhhhh---------hhhHHHhhhcCceEEecc--HHH--HHHHHHHHHHHhC
Confidence 8999999998877633 34556888888 555433 333 6777777777653
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=1.6e-07 Score=83.87 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=77.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC------------C------------------------------CCccEEEEEcCHHH
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH------------P------------------------------SVESAYLVEIDNRV 93 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~------------~------------------------------~~~~v~~ve~~~~~ 93 (197)
..+..++|.+||+|.+..+.+.. . ...+++++|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 34579999999999999886541 0 11369999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhc---CCCcEEEE
Q psy4592 94 IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL---RPGGIVCS 169 (197)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~L---kpgG~l~~ 169 (197)
++.|++|+... ++ ...+++.++|+.+.... ..++||+|++|||........-...+++..+-+.| .+|+.+++
T Consensus 269 v~~A~~N~~~~--g~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRA--GV-AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHc--CC-CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999998752 22 24689999998875332 13579999999986443211100133444444333 48888877
Q ss_pred EcCC
Q psy4592 170 QAGT 173 (197)
Q Consensus 170 ~~~~ 173 (197)
.+..
T Consensus 346 lt~~ 349 (702)
T PRK11783 346 FSSS 349 (702)
T ss_pred EeCC
Confidence 6543
No 213
>KOG1975|consensus
Probab=98.68 E-value=3.5e-08 Score=78.43 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC--CCCeEEEEcchHH-----HHhhcC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS--DPRLTVHVGDGFR-----FMSEHQ 128 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~d~~~-----~~~~~~ 128 (197)
++...++++|||-|+-.+-+.+. +...++++||.+.-++-|+++.....+... .=...++.+|-.. .++..+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999987666655 346899999999999999887543311100 0136777777432 122223
Q ss_pred CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.+||+|-+-.+.|..-...--...++.++.+.|+|||+|+-.+.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 459999998887775221111256899999999999999976533
No 214
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.63 E-value=2e-07 Score=73.82 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCeeeeeccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592 21 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY 100 (197)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~ 100 (197)
+.+|..++.| ......+...+.. .+...|||+|+|+|.++..+++.. .+++++|+|+.+.+..++.
T Consensus 6 k~~gQnFL~~---------~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~ 71 (262)
T PF00398_consen 6 KSLGQNFLVD---------PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKER 71 (262)
T ss_dssp CGCTSSEEEH---------HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHH
T ss_pred CCCCcCeeCC---------HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHH
Confidence 3467776665 3334555555532 366799999999999999999876 7999999999999999998
Q ss_pred cCCCCCCCCCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHh
Q psy4592 101 LPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSR 159 (197)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (197)
+. ..++++++.+|+.++-... ......|+.|.|... +..++.++..
T Consensus 72 ~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i-------s~~il~~ll~ 119 (262)
T PF00398_consen 72 FA------SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI-------SSPILRKLLE 119 (262)
T ss_dssp CT------TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG-------HHHHHHHHHH
T ss_pred hh------hcccceeeecchhccccHHhhcCCceEEEEEecccc-------hHHHHHHHhh
Confidence 75 2578999999988743322 246678998887422 2456666655
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.7e-07 Score=74.78 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=84.6
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcCCCC--------------------------------c-------cEEEEEcCHHH
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKHPSV--------------------------------E-------SAYLVEIDNRV 93 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--------------------------------~-------~v~~ve~~~~~ 93 (197)
..+.....++|-=||+|.+..+.+....+ . .+.++|+|+.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 33455578999999999999887765321 1 27799999999
Q ss_pred HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC--CC---cccccHHHHHHHHhhcCCCcEEE
Q psy4592 94 IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG--PA---ESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~--~~---~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
++.|+.|... .+. .+.+++.++|+..+-.. .+++|+||+|||.... .. ..|+ .++.+.+++.++.-+.++
T Consensus 267 i~~Ak~NA~~--AGv-~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 267 IEGAKANARA--AGV-GDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHHHHh--cCC-CceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEE
Confidence 9999999765 232 45899999998764332 2789999999986432 11 1133 567778889999989888
Q ss_pred EEcC
Q psy4592 169 SQAG 172 (197)
Q Consensus 169 ~~~~ 172 (197)
+.+.
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 8653
No 216
>PRK10742 putative methyltransferase; Provisional
Probab=98.56 E-value=4e-07 Score=70.69 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=66.7
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCCC---CCeEEEEcchHHHHhhcCCceeEE
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLSD---PRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~~---~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+|||+-+|+|..+..++..+ ++|+++|.+|.+..+.+.++.... ..... .+++++++|+.+++....++||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 89999999999999999874 679999999999988887765420 00011 479999999999998766689999
Q ss_pred EECCCCCCC
Q psy4592 135 ITDSSDPVG 143 (197)
Q Consensus 135 ~~~~~~~~~ 143 (197)
+.||+++..
T Consensus 169 YlDPMfp~~ 177 (250)
T PRK10742 169 YLDPMFPHK 177 (250)
T ss_pred EECCCCCCC
Confidence 999998764
No 217
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.53 E-value=9.4e-08 Score=65.11 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=44.9
Q ss_pred EEEeCCchHhHHHHhcCCCC---ccEEEEEcCHH---HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEE
Q psy4592 62 LIVGGGDGGVAREVLKHPSV---ESAYLVEIDNR---VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVI 134 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~~---~~v~~ve~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I 134 (197)
||+|+..|..+..+++..+. .+++++|..+. .-+.+++. + ...+++++.++..+.++.- .+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~------~-~~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKA------G-LSDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS------------G------G-G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhc------C-CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 68999999988887764322 37999999994 33333321 1 1347999999998887654 3799999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+.|..... . .....++.+.+.|+|||++++
T Consensus 74 ~iDg~H~~-~----~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 74 FIDGDHSY-E----AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEES---H-H----HHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCH-H----HHHHHHHHHHHHcCCCeEEEE
Confidence 99984211 1 125678899999999999987
No 218
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.51 E-value=1.2e-06 Score=78.01 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCeEEEEeCCchHhHHHHhcCC-------C-----CccEEEEEcCH---HHHHHH-----------HhhcCCCC---CCC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP-------S-----VESAYLVEIDN---RVIEVS-----------KKYLPGMA---VGL 108 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~-------~-----~~~v~~ve~~~---~~~~~a-----------~~~~~~~~---~~~ 108 (197)
.-+|+|+|.|+|.......+.. + ..+++.+|..| +-+..+ ++....+. .+.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3699999999998665544211 1 35889999754 222222 12111110 011
Q ss_pred -------CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 109 -------SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 109 -------~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
..-.+++..+|+++.++.....+|+++.|++.+.. ++.++++++|+.++++++|||.+...+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 11256688899999888655679999999987665 457889999999999999999999865
No 219
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.50 E-value=2.8e-07 Score=77.53 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=62.4
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEE--EEcCHHHHHHHHhh-cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYL--VEIDNRVIEVSKKY-LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~--ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+.+||+|||+|+++.+|..+. ...+.. -|..+..++.|.++ ++. -+.+. + ..-++.++.+||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa--------~~~~~-~--s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPA--------MIGVL-G--SQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcch--------hhhhh-c--cccccCCccchhhhh
Confidence 689999999999999988763 222211 13334555555443 221 11111 1 123666788999999
Q ss_pred ECCCC-CCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSD-PVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~-~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+.-+. ++..+. .-++-++-|+|+|||+|++..
T Consensus 187 csrc~i~W~~~~----g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 187 CSRCLIPWHPND----GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cccccccchhcc----cceeehhhhhhccCceEEecC
Confidence 87654 444443 347788999999999999865
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.49 E-value=3.7e-06 Score=64.06 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=81.7
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHH----HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNR----VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (197)
...+++.+||-+|.++|.....+..- .+...|++||.+|. .+++|+++ +|+-.+.+||+......
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhh
Confidence 33456789999999999988887763 33579999999994 45566553 57888999998543332
Q ss_pred --CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC-----CCcChhHHHHHHHHHHh
Q psy4592 128 --QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 128 --~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (197)
-+..|+|++|.+.+.- .+-+..++...||+||.+++..-. .....+.+++..+.+++
T Consensus 139 ~lv~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKE 202 (229)
T ss_dssp TTS--EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHC
T ss_pred cccccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHH
Confidence 4689999999863221 255778888999999998876522 11234566667777765
No 221
>KOG3178|consensus
Probab=98.47 E-value=6.2e-07 Score=72.36 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=78.3
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
...+|+|.|.|..+..++..++ ++.+++.+...+-.++.++. +.++.+-+|..+- ..+-|+|++.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mkW 244 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMKW 244 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEEe
Confidence 6899999999999999888654 68889998777666666542 3477788886432 45678999999
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
..|+.++..+ .++++++++.|+|||.+++.-+
T Consensus 245 iLhdwtDedc--vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 245 ILHDWTDEDC--VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ecccCChHHH--HHHHHHHHHhCCCCCEEEEEec
Confidence 9988887765 6899999999999999888653
No 222
>KOG1122|consensus
Probab=98.47 E-value=8.2e-07 Score=73.03 Aligned_cols=135 Identities=12% Similarity=0.150 Sum_probs=97.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~ 133 (197)
.++.+|||+++..|+=+.+++... ....|++-|.+.+-++..+.++..+ ...+.-+.+.|..++... ..++||-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl----Gv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL----GVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh----CCCceEEEccCcccccccccCcccce
Confidence 345799999999999887777532 2368999999999999999988765 245677788888765332 2348999
Q ss_pred EEECCCCCC---CCCc---------------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCcc
Q psy4592 134 IITDSSDPV---GPAE---------------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195 (197)
Q Consensus 134 I~~~~~~~~---~~~~---------------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v 195 (197)
|+.|+|... +..+ .-++.+++.++.+.+++||+|+..+++-.. +....+....-..||++
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~--~ENE~vV~yaL~K~p~~ 393 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV--EENEAVVDYALKKRPEV 393 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch--hhhHHHHHHHHHhCCce
Confidence 999998644 1000 012367899999999999999998877433 44566666666667766
Q ss_pred c
Q psy4592 196 H 196 (197)
Q Consensus 196 ~ 196 (197)
+
T Consensus 394 k 394 (460)
T KOG1122|consen 394 K 394 (460)
T ss_pred E
Confidence 5
No 223
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.46 E-value=2.9e-07 Score=68.03 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=76.9
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
..+.|+|+|+|.++...++.. .++.+||.+|...++|++|+..+ ...+++++.+|++++ .. +..|+|+|.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA~~y-~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDARDY-DF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCC----CCcceEEEecccccc-cc--cccceeHHHH
Confidence 589999999999988777663 69999999999999999997654 356899999999874 33 5689999876
Q ss_pred CCCCC-CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 139 SDPVG-PAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 139 ~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
-.... ...+ ...++.+...||.++.++-+
T Consensus 105 lDTaLi~E~q---VpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIEEKQ---VPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhcccc---cHHHHHHHHHhhcCCccccH
Confidence 43222 2222 34677788888999988743
No 224
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.44 E-value=1.3e-06 Score=65.93 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=58.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
++...|.|+|||.+.++..+.. ..+|...|+-+. ++ .+..+|+.. +|-.+++.|++|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------------n~--~Vtacdia~-vPL~~~svDv~V 127 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------------NP--RVTACDIAN-VPLEDESVDVAV 127 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------ST--TEEES-TTS--S--TT-EEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------------CC--CEEEecCcc-CcCCCCceeEEE
Confidence 4457999999999999866532 247888887331 12 366688744 555678999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 189 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (197)
.+...... +. ..++.++.|+|||||.+.+....... +..+.+.+.+.
T Consensus 128 fcLSLMGT-n~----~~fi~EA~RvLK~~G~L~IAEV~SRf--~~~~~F~~~~~ 174 (219)
T PF05148_consen 128 FCLSLMGT-NW----PDFIREANRVLKPGGILKIAEVKSRF--ENVKQFIKALK 174 (219)
T ss_dssp EES---SS--H----HHHHHHHHHHEEEEEEEEEEEEGGG---S-HHHHHHHHH
T ss_pred EEhhhhCC-Cc----HHHHHHHHheeccCcEEEEEEecccC--cCHHHHHHHHH
Confidence 98764322 32 78999999999999999986533222 23344444444
No 225
>PRK04148 hypothetical protein; Provisional
Probab=98.42 E-value=6.9e-07 Score=63.15 Aligned_cols=70 Identities=23% Similarity=0.230 Sum_probs=51.8
Q ss_pred CCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+|||||||+|. ++..+.+.+ ..|+++|++|..++.++++ .++++.+|..+.-..--+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 345799999999996 777777553 7999999999999888764 25677788654222224579999
Q ss_pred EECC
Q psy4592 135 ITDS 138 (197)
Q Consensus 135 ~~~~ 138 (197)
.+--
T Consensus 82 ysir 85 (134)
T PRK04148 82 YSIR 85 (134)
T ss_pred EEeC
Confidence 9754
No 226
>KOG2187|consensus
Probab=98.42 E-value=3.2e-06 Score=71.28 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=76.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-C---Cce
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-Q---QEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~ 131 (197)
+..+.++|+.||||.++..+++.. .++.+||++|+.++-|+++...+ ...|.+|+++.+++.++.- + ++=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence 455899999999999999888765 79999999999999999997653 3468999999877765542 1 234
Q ss_pred e-EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 132 D-VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 132 D-~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+ ++++|++-.... ..+++.+++.-++-=.+++.
T Consensus 456 ~~v~iiDPpR~Glh------~~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187|consen 456 TLVAIIDPPRKGLH------MKVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred ceEEEECCCccccc------HHHHHHHHhccCccceEEEE
Confidence 5 777788743321 45667666665566555554
No 227
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.36 E-value=5.7e-07 Score=71.83 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=70.9
Q ss_pred CCeEEEEeCCchHhH--HH--HhcCC----CCccEEEEEcCHHHHHHHHhhc-C-----------------CCC---CC-
Q psy4592 58 PKKVLIVGGGDGGVA--RE--VLKHP----SVESAYLVEIDNRVIEVSKKYL-P-----------------GMA---VG- 107 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~--~~--l~~~~----~~~~v~~ve~~~~~~~~a~~~~-~-----------------~~~---~~- 107 (197)
+-+|+-.||+||.-+ .+ +.+.. ...+|+++|+|+.+++.|++-. + ... ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999632 22 22221 1358999999999999998741 1 000 00
Q ss_pred --C---CCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 108 --L---SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 108 --~---~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
. -...+.|...|+.+......++||+|++.....+.... .....++.+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~--~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT--TQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH--HHHHHHHHHHHHhCCCcEEEEe
Confidence 0 01356777777654211114689999996554332221 1278999999999999998873
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.32 E-value=3.6e-06 Score=64.11 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC-----CCCCCCCCeEEEEcchHHHH--hhcC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM-----AVGLSDPRLTVHVGDGFRFM--SEHQ 128 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~d~~~~~--~~~~ 128 (197)
.+...++|||||.|.....++...+..+..|||+.+...+.|+.....+ .-+....++++..+|..+.. ...-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 4567999999999998887776555456999999999887776432110 01123457888999875422 1112
Q ss_pred CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
...|+|++|..... +.+ ...+.+....||+|.+++.
T Consensus 121 s~AdvVf~Nn~~F~---~~l--~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCFD---PDL--NLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT----HHH--HHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEeccccC---HHH--HHHHHHHHhcCCCCCEEEE
Confidence 45899999885321 111 2344666678898888775
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.29 E-value=1.1e-06 Score=66.47 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=64.9
Q ss_pred CCCeEEEEeCCchHhH----HHHhc---C-CC-CccEEEEEcCHHHHHHHHhh------------------c-CCCCCCC
Q psy4592 57 NPKKVLIVGGGDGGVA----REVLK---H-PS-VESAYLVEIDNRVIEVSKKY------------------L-PGMAVGL 108 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~----~~l~~---~-~~-~~~v~~ve~~~~~~~~a~~~------------------~-~~~~~~~ 108 (197)
.+-+|+-.||++|.-+ ..+.. . .+ ..+|++.|+|+.+++.|++- + ...++.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999632 22222 1 11 36999999999999999763 1 1000000
Q ss_pred C-----CCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 109 S-----DPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 109 ~-----~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
. ..+++|...|..+ .....+.||+|+|....-..... ...+.++.+.+.|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~--~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE--TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH--HHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH--HHHHHHHHHHHHcCCCCEEEEe
Confidence 0 1368888888877 22235789999997654332221 1278999999999999999984
No 230
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.29 E-value=6.7e-06 Score=64.97 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC---C---------C---CC-------------
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG---M---------A---VG------------- 107 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~---------~---~~------------- 107 (197)
+.+.+||.-|||.|.++.++++.+ ..+.+.|.|--|+-...--+.. . . +.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 345799999999999999999884 6899999998775332211110 0 0 00
Q ss_pred --------CCCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 108 --------LSDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 108 --------~~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
....++++..||..+..... .++||+|+...+....++- -++++.+.++||||| +++|.+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni----~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI----IEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH----HHHHHHHHHHhccCC-EEEecCC
Confidence 01236777788877765543 4699999988654443332 679999999999999 6667654
No 231
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=3.6e-06 Score=64.32 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+++++|||+|.|.=+.-++-..+..++|.+|....-+...+.-...+ +-+|++++++-++++.+.... ||+|++-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccccc-CcEEEee
Confidence 68999999999965544443345577999998876555554433322 446899999999886543222 9999987
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+.... ..+.+-+...+|+||.++.
T Consensus 143 Ava~L--------~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AVASL--------NVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hccch--------HHHHHHHHHhcccCCcchh
Confidence 75311 4577888999999998765
No 232
>KOG3115|consensus
Probab=98.27 E-value=3e-06 Score=63.44 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=84.1
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC---CCCCCCCeEEEEcchHHHHhhc--CCceeE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA---VGLSDPRLTVHVGDGFRFMSEH--QQEFDV 133 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~--~~~~D~ 133 (197)
-.+.|||||-|++...++-..|.+-+.|.||.-.+.+..+.++..++ .+-..+++.+...++..+++.- .++.+-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 47999999999999999988898999999999888888877654332 1112467888888888877652 344555
Q ss_pred EEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++...+.++. ....+.+..++.+..-+|++||.++...
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 5555554442 3345566789999999999999998854
No 233
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.4e-05 Score=57.29 Aligned_cols=136 Identities=16% Similarity=0.135 Sum_probs=90.8
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF 123 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 123 (197)
..++.-+..+..+.+.+||=+|..+|....++..-.+...+++||.+|....-.-.-.. ..+|+-.+.+||+..
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P 136 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKP 136 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCc
Confidence 34444444444567789999999999998888876666799999999976543332222 135777888998753
Q ss_pred Hhh--cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCC-----cChhHHHHHHHHHHhh
Q psy4592 124 MSE--HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLW-----YSLDCVGNTLQHCASV 191 (197)
Q Consensus 124 ~~~--~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~~~~~ 191 (197)
... --+..|+|+.|...+.. .+-+..++...||+||.+++..-... ...+.++...+.+++.
T Consensus 137 ~~Y~~~Ve~VDviy~DVAQp~Q------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 137 EKYRHLVEKVDVIYQDVAQPNQ------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred HHhhhhcccccEEEEecCCchH------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 332 25679999999864322 25577889999999997666542211 1234566566666554
No 234
>KOG2198|consensus
Probab=98.25 E-value=9.8e-06 Score=65.91 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCC----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPS----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------ 124 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 124 (197)
.++..+|||+|+..|+-+..+++..- ...+++=|.++.-+....+..... ..+++.+...|+..+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence 46778999999999998877775421 237888899988777666544432 2344444444433221
Q ss_pred --hhcCCceeEEEECCCCCCC----CCcccc---------------cHHHHHHHHhhcCCCcEEEEEcCCC--CcChhHH
Q psy4592 125 --SEHQQEFDVIITDSSDPVG----PAESLF---------------QASYFELMSRALRPGGIVCSQAGTL--WYSLDCV 181 (197)
Q Consensus 125 --~~~~~~~D~I~~~~~~~~~----~~~~l~---------------~~~~~~~~~~~LkpgG~l~~~~~~~--~~~~~~~ 181 (197)
+.....||-|++|.|.... .++.++ .-..+.+..++||+||.++.++++. ..+....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 1224589999999875331 111111 2357888899999999999998773 3355666
Q ss_pred HHHHHHHHhhCCc
Q psy4592 182 GNTLQHCASVFPR 194 (197)
Q Consensus 182 ~~~~~~~~~~f~~ 194 (197)
+++++.+...++-
T Consensus 309 ~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 309 QEALQKVGGAVEL 321 (375)
T ss_pred HHHHHHhcCcccc
Confidence 7777666655543
No 235
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.23 E-value=9.6e-06 Score=64.28 Aligned_cols=108 Identities=17% Similarity=0.333 Sum_probs=64.1
Q ss_pred CCCeEEEEeCCchHhHHH-HhcC-CCCccEEEEEcCHHHHHHHHhhcC-CCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVARE-VLKH-PSVESAYLVEIDNRVIEVSKKYLP-GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~-l~~~-~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.|.+|+-||+|.==++.. +++. ...+.++++|+||+..+.+++-.. .. ++ ..+++++.+|+.+.. ..-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~--~L-~~~m~f~~~d~~~~~-~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL--GL-SKRMSFITADVLDVT-YDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH--SSEEEEES-GGGG--GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc--cc-cCCeEEEecchhccc-cccccCCE
Confidence 457999999997655544 4443 345789999999999999988654 21 12 468999999986532 22468999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+..........+ ..+.++++.+.++||..+++-+
T Consensus 196 V~lAalVg~~~e~---K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP---KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S---HHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch---HHHHHHHHHhhCCCCcEEEEec
Confidence 9988754332222 3789999999999999999875
No 236
>KOG4589|consensus
Probab=98.20 E-value=1.4e-05 Score=59.25 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHh-------h
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMS-------E 126 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~-------~ 126 (197)
++..+|||+||..|+|+.-..+. .|...+.+||+-.-. + .+...++++ |+.+... .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-------~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-------PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-------CCCcccccccccCCHHHHHHHHHhC
Confidence 34679999999999999876654 577899999984311 1 123444444 4332111 1
Q ss_pred cCCceeEEEECCCC-CCCCC--cc--cc--cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 127 HQQEFDVIITDSSD-PVGPA--ES--LF--QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 127 ~~~~~D~I~~~~~~-~~~~~--~~--l~--~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
+..+.|+|++|+.- ..+.. .+ +. ..+.+--+...++|+|.|++-.... +....+-+.+.++|..|+
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g----~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG----SEEALLQRRLQAVFTNVK 205 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC----CchHHHHHHHHHHhhhcE
Confidence 34689999999863 22211 11 00 0223333457789999999865332 233344455555565554
No 237
>KOG3045|consensus
Probab=98.11 E-value=2.1e-05 Score=61.14 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+....|.|+|||.+-++. .. . ..|...|+-+ .+-.++.+|+++ ++..+++.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~-~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-R-HKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh---cc-c-cceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEE
Confidence 344689999999987764 22 2 5777777622 234567788877 566688999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.+...... +. ..|+.+++|+|++||.+++-...
T Consensus 234 ~CLSLMgt-n~----~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 234 FCLSLMGT-NL----ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred eeHhhhcc-cH----HHHHHHHHHHhccCceEEEEehh
Confidence 88754222 22 67999999999999999986543
No 238
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.10 E-value=7.7e-05 Score=60.59 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcC-CCCCCCCCCCeEE--EEcchHHHHhh--
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLP-GMAVGLSDPRLTV--HVGDGFRFMSE-- 126 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~~~~~~~--~~~d~~~~~~~-- 126 (197)
+.+..++|+|||+|.-+..++.. ....+++.+|+|.++++.+.+.+. . ..+.+++ +++|..+.+..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEEecHHHHHhhcc
Confidence 34558999999999876655542 223689999999999999988876 3 2345555 88888765432
Q ss_pred -c--CCceeEEEECC-CCCCCCCcccccHHHHHHHHh-hcCCCcEEEEEc
Q psy4592 127 -H--QQEFDVIITDS-SDPVGPAESLFQASYFELMSR-ALRPGGIVCSQA 171 (197)
Q Consensus 127 -~--~~~~D~I~~~~-~~~~~~~~~l~~~~~~~~~~~-~LkpgG~l~~~~ 171 (197)
. .....+++.-. ......+. ....|++++++ .|+|||.|++-.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~--ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRP--EAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccccCCccEEEEeCccccCCCHH--HHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 12345555433 22221111 12579999999 999999999865
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.10 E-value=2.4e-05 Score=62.40 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCC-CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHP-SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..|.+|||+|+|.|..+-++.... ...+++++|.|+.|+++++.-+.... .............+.. ...+.|+|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~--~~~~~DLv 106 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEWRRVLYRDFL--PFPPDDLV 106 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc---ccccchhhhhhhcccc--cCCCCcEE
Confidence 467899999999997665555432 34689999999999999988665321 1111111100000111 12345999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc-CCCCcChhHHHHHHHHHH
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTLQHCA 189 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~ 189 (197)
++.......+.. ...++++++.+.+.+ ++++.. +++. ....+..+.+.+.
T Consensus 107 i~s~~L~EL~~~--~r~~lv~~LW~~~~~--~LVlVEpGt~~-Gf~~i~~aR~~l~ 157 (274)
T PF09243_consen 107 IASYVLNELPSA--ARAELVRSLWNKTAP--VLVLVEPGTPA-GFRRIAEARDQLL 157 (274)
T ss_pred EEehhhhcCCch--HHHHHHHHHHHhccC--cEEEEcCCChH-HHHHHHHHHHHHh
Confidence 997765443331 236788888887766 555543 2221 2344555555554
No 240
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.09 E-value=2e-05 Score=62.37 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCeEEEEeCCchH----hHHHHhcCCC-----CccEEEEEcCHHHHHHHHhh-cC-CCC-CCC------------CC--
Q psy4592 57 NPKKVLIVGGGDGG----VAREVLKHPS-----VESAYLVEIDNRVIEVSKKY-LP-GMA-VGL------------SD-- 110 (197)
Q Consensus 57 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~ve~~~~~~~~a~~~-~~-~~~-~~~------------~~-- 110 (197)
.+-+|+-.||+||. ++..+.+..+ ..+|++.|||..+++.|++- .+ ... .++ .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999996 3333444332 47999999999999999763 11 000 000 00
Q ss_pred --------CCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 111 --------PRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 111 --------~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
..+.|...|.....+ ..+.||+|+|-...-....+ ...+.++..+..|+|||+|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~--~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE--TQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH--HHHHHHHHHHHHhCCCCEEEE
Confidence 134444455433221 24679999996654232211 137899999999999999998
No 241
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.08 E-value=5.4e-05 Score=61.54 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++.++|||||++|+++..+.+.+ ..|++||..+ +.... . +.++++...+|...+.+. .+++|.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L----~------~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSL----M------DTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhh----h------CCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 456899999999999999999885 5999999655 22211 1 356899999998776543 56899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCC--cEEEEEcCCCC-cChhHHHHHHHHHH
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPG--GIVCSQAGTLW-YSLDCVGNTLQHCA 189 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg--G~l~~~~~~~~-~~~~~~~~~~~~~~ 189 (197)
+|... .+ ....+-+.+-|..| ..++++.--+. .+.+..+..+..+.
T Consensus 276 cDmve----~P----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 276 CDMVE----KP----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred Eeccc----CH----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99852 11 23334444444443 35666553332 23444454444443
No 242
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.07 E-value=1.7e-05 Score=55.53 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=47.7
Q ss_pred CCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 111 PRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 111 ~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
-.+++..+|+++.++.....+|+|+.|++.+.. ++.+++.++++.++++++|||.+...+..
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nPelWs~e~~~~l~~~~~~~~~l~Tys~a 92 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NPELWSEELFKKLARLSKPGGTLATYSSA 92 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SGGGSSHHHHHHHHHHEEEEEEEEES--B
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-CcccCCHHHHHHHHHHhCCCcEEEEeech
Confidence 357789999999998867899999999976665 55689999999999999999999986533
No 243
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.1e-05 Score=58.89 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=77.8
Q ss_pred ccchhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeE-E
Q psy4592 37 EFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT-V 115 (197)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 115 (197)
++..+-...++.++.. ..+++.+||+|+.||+++..++..+ ..+|+++|..-..+..--+ .++++. +
T Consensus 61 SRG~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---------~d~rV~~~ 128 (245)
T COG1189 61 SRGGLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---------NDPRVIVL 128 (245)
T ss_pred ccHHHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---------cCCcEEEE
Confidence 3444444566666653 3567899999999999999988885 4799999987655443222 223443 3
Q ss_pred EEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 116 HVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 116 ~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...+++..-+. ..+..|+|++|..+-.. ...+..+..+++|+|.++.-.
T Consensus 129 E~tN~r~l~~~~~~~~~d~~v~DvSFISL-------~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 129 ERTNVRYLTPEDFTEKPDLIVIDVSFISL-------KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ecCChhhCCHHHcccCCCeEEEEeehhhH-------HHHHHHHHHhcCCCceEEEEe
Confidence 44565543332 24578999999853221 557788899999999877643
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=2e-05 Score=58.83 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+++|||+|+|+|-.+.+.++.+. ..+...|++|......+.|... +...+.+...|.. . +...||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~a-----ngv~i~~~~~d~~---g-~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAA-----NGVSILFTHADLI---G-SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhh-----ccceeEEeecccc---C-CCcceeEEEe
Confidence 367999999999998888777754 7899999999998888888765 3457788888852 2 4578999987
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.-.++..+. ...++. +++.|+..|..++..
T Consensus 149 gDlfy~~~~----a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 149 GDLFYNHTE----ADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred eceecCchH----HHHHHH-HHHHHHhCCCEEEEe
Confidence 432221111 144555 888888888777743
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.96 E-value=1.8e-05 Score=56.53 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=45.9
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~ 120 (197)
.++|+|||.|.++..+++..+..+++++|.+|.+.+.+++++... ..++++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n----~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN----NLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEEeee
Confidence 489999999999999888776679999999999999999987642 124577776653
No 246
>KOG2730|consensus
Probab=97.96 E-value=5.9e-05 Score=57.34 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~ 133 (197)
+...|+|.-||.|+.+...+..+ ..|.+||+||.-+..|+.|++- -|. .+++++++||..+..... ...+|.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaei--YGI-~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEV--YGV-PDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhcccee--ecC-CceeEEEechHHHHHHHHhhhhheeee
Confidence 56689999999999988888776 6899999999999999999764 233 349999999988765542 335778
Q ss_pred EEECCC
Q psy4592 134 IITDSS 139 (197)
Q Consensus 134 I~~~~~ 139 (197)
|+..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 887764
No 247
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.96 E-value=6.1e-05 Score=58.22 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=58.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~ 135 (197)
.+++||-+|=..-.. .+++......+|+++|+|+.+++..++..... +-+++.+..|.++.++.. .++||+++
T Consensus 44 ~gk~il~lGDDDLtS-lA~al~~~~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTS-LALALTGLPKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HH-HHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHH-HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 578999999876433 33333333479999999999999888776542 234999999999888764 67999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
.|||.... .+ .-|+......||..|...
T Consensus 118 TDPPyT~~---G~--~LFlsRgi~~Lk~~g~~g 145 (243)
T PF01861_consen 118 TDPPYTPE---GL--KLFLSRGIEALKGEGCAG 145 (243)
T ss_dssp E---SSHH---HH--HHHHHHHHHTB-STT-EE
T ss_pred eCCCCCHH---HH--HHHHHHHHHHhCCCCceE
Confidence 99974221 11 458888899999888433
No 248
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.96 E-value=0.00012 Score=51.71 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=67.3
Q ss_pred EEEEeCCchHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-HhhcC-CceeEEEEC
Q psy4592 61 VLIVGGGDGGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSEHQ-QEFDVIITD 137 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~~D~I~~~ 137 (197)
++|+|||+|... .+....+. ..++++|+++.++..++...... ....+.+..+|.... .+... ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999865 33332221 47888999999988855543210 111167777776552 33333 479999444
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
...+... ....+..+.+.|+|+|.+++....
T Consensus 127 ~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP-----PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3333322 267899999999999999887644
No 249
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.95 E-value=7.9e-06 Score=65.38 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=46.3
Q ss_pred CCeEEEEeCCchHhHHHHh-cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH----HHHhhcCCcee
Q psy4592 58 PKKVLIVGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF----RFMSEHQQEFD 132 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~D 132 (197)
.-++||||+|...+=-.|. +.. ..++++.|+|+..++.|+++.... ..+ ..+++++...-. ..+....+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N-~~L-~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERN-PNL-ESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhc-ccc-ccceEEEEcCCccccchhhhcccceee
Confidence 4589999999876533333 333 479999999999999999987652 123 357888755321 11222346899
Q ss_pred EEEECCCCCCCC
Q psy4592 133 VIITDSSDPVGP 144 (197)
Q Consensus 133 ~I~~~~~~~~~~ 144 (197)
+.+||||++.+.
T Consensus 180 ftmCNPPFy~s~ 191 (299)
T PF05971_consen 180 FTMCNPPFYSSQ 191 (299)
T ss_dssp EEEE-----SS-
T ss_pred EEecCCccccCh
Confidence 999999987763
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.92 E-value=0.00011 Score=59.11 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCce
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~ 131 (197)
.++..++|.-+|.|+.+.++++..+..+++++|.||.+++.+++.+... ..++++++++..++... ...++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence 4556999999999999999998755589999999999999999877532 35899999998875432 13579
Q ss_pred eEEEECC
Q psy4592 132 DVIITDS 138 (197)
Q Consensus 132 D~I~~~~ 138 (197)
|.|+.|.
T Consensus 94 DgIl~DL 100 (305)
T TIGR00006 94 DGILVDL 100 (305)
T ss_pred cEEEEec
Confidence 9999985
No 251
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.88 E-value=5.3e-05 Score=62.95 Aligned_cols=104 Identities=28% Similarity=0.393 Sum_probs=76.6
Q ss_pred CCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+-+|||-=+|+|.=+...++. .+...|+.-|+|++.++..++|+..+ ++...++++.+.|+...+......||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999877666654 45579999999999999999997652 223236899999999887555689999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
||+ ..+ ..|++.+.+.++.||.+.+..
T Consensus 128 DPf--GSp------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPF--GSP------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --S--S--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC--CCc------cHhHHHHHHHhhcCCEEEEec
Confidence 996 122 459999999999999999985
No 252
>KOG0822|consensus
Probab=97.84 E-value=4.9e-05 Score=64.49 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=86.5
Q ss_pred CCeEEEEeCCchHhHHHHhc----CCCCccEEEEEcCHHHHHHHHh-hcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592 58 PKKVLIVGGGDGGVAREVLK----HPSVESAYLVEIDNRVIEVSKK-YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD 132 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~ve~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 132 (197)
...|+.+|+|-|=+..+..+ .....++++||.+|+++-..+. ++..| ..+++++.+|.+.+.+ +.++.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a-p~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA-PREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC-chhhcc
Confidence 45788999999977665543 2234689999999988776654 45544 3589999999988653 247899
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHH
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 189 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (197)
++|+..--..+.+ . .+++.+..+.+.|||+|+.+-.+.+....+-+-..+++.++
T Consensus 442 I~VSELLGSFGDN-E-LSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~ 496 (649)
T KOG0822|consen 442 IIVSELLGSFGDN-E-LSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVK 496 (649)
T ss_pred chHHHhhccccCc-c-CCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHH
Confidence 9998765444433 2 35899999999999999988766554443333344444443
No 253
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.83 E-value=0.00028 Score=55.61 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=72.8
Q ss_pred CeEEEEeCCch--HhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC--eEEEEcchHHHHhh-----cC
Q psy4592 59 KKVLIVGGGDG--GVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR--LTVHVGDGFRFMSE-----HQ 128 (197)
Q Consensus 59 ~~vLdiG~G~G--~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~-----~~ 128 (197)
...||||||.= ....+++. ..+.++|+.||+||-++..++..+.. .++ ..++.+|+++.-.- ..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHHHH
Confidence 69999999943 34455543 35679999999999999998887763 345 88999998863211 01
Q ss_pred Ccee-----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 129 QEFD-----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 129 ~~~D-----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
+-+| .+++....|+.++..- ....++.++..|.||.+++++-.+.....+..+.+...+++.
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D~~d-p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~ 210 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPDDDD-PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA 210 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-CGCT-HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC
T ss_pred hcCCCCCCeeeeeeeeeccCCCccC-HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC
Confidence 2333 4555555555544222 278999999999999999997544433444445555555544
No 254
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.80 E-value=0.00016 Score=55.10 Aligned_cols=101 Identities=23% Similarity=0.338 Sum_probs=69.9
Q ss_pred EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC
Q psy4592 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~ 140 (197)
|.||||--|.++.++.+.....+++++|+++.-++.|+++.... ++ ..++++..+|..+.++. .+..|.|+....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l-~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GL-EDRIEVRLGDGLEVLKP-GEDVDTIVIAGM- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T--TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-cccEEEEECCcccccCC-CCCCCEEEEecC-
Confidence 68999999999999999887778999999999999999987653 22 35899999998776654 233788887653
Q ss_pred CCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 141 PVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...+ ..+.+++....++..-.|+++.
T Consensus 76 ----GG~l-I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 76 ----GGEL-IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -----HHH-HHHHHHHTGGGGTT--EEEEEE
T ss_pred ----CHHH-HHHHHHhhHHHhccCCeEEEeC
Confidence 1111 2567777777777767788763
No 255
>KOG3987|consensus
Probab=97.77 E-value=2.7e-05 Score=58.67 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=65.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
..+.++||+|+|.|.++..++-.. .+|++.|.|..|....++. +..+. .+.++.. .+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl--~~~ew~~-t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVL--TEIEWLQ-TDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCcee--eehhhhh-cCceeehHH
Confidence 356899999999999998877554 5889999999998877652 11222 1223333 345799998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCC-CcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRP-GGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkp-gG~l~~~ 170 (197)
+-....-..++ -++++.++.+|+| +|..++.
T Consensus 175 clNlLDRc~~p----~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRCFDP----FKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhhcCh----HHHHHHHHHHhccCCCcEEEE
Confidence 74332111122 5688999999999 8877664
No 256
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.74 E-value=8.1e-05 Score=53.39 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhc-----CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLK-----HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE 130 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~-----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 130 (197)
.++.+|+|+|||.|+++..++. . +..++++||.++..++.+.++...+.... ..++++..++..+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS--SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc--cCC
Confidence 4567999999999999999888 5 45899999999999998887755432111 1356666666443221 344
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.++++.-- ...+ .++..++...+ ++-.+++.+
T Consensus 100 ~~~~vgLH---aCG~---Ls~~~l~~~~~---~~~~~l~~v 131 (141)
T PF13679_consen 100 PDILVGLH---ACGD---LSDRALRLFIR---PNARFLVLV 131 (141)
T ss_pred CeEEEEee---cccc---hHHHHHHHHHH---cCCCEEEEc
Confidence 55555322 2211 12556665555 666555544
No 257
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00038 Score=56.90 Aligned_cols=102 Identities=26% Similarity=0.347 Sum_probs=83.3
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+.+|+|-=+|+|.=+...+...+...++.=|++|+.++++++|...+ ...+..++..|+...+......||+|=.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhcCCCccEEecC
Confidence 77999999999988877776655458999999999999999998753 24466777799988877656889999999
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+ .+| ..|++.+.+.++.||++.+..
T Consensus 129 PF--GSP------aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF--GSP------APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC--CCC------chHHHHHHHHhhcCCEEEEEe
Confidence 85 223 348899999999999999975
No 258
>KOG2352|consensus
Probab=97.69 E-value=0.00049 Score=58.11 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=93.9
Q ss_pred CCCcEEEEcCeeeeec-cchhhHHHHHHhhcccC-C-CCCC-eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH
Q psy4592 22 EFGTALILDGIIQCTE-FDEFSYSEMIAFLPLCS-H-PNPK-KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS 97 (197)
Q Consensus 22 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a 97 (197)
.++...++|....... .....|.+.+.....+. . .... ++|.+|||+-.+...+.+.+ ...|+.+|+|+..++.+
T Consensus 9 ~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m 87 (482)
T KOG2352|consen 9 SFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAM 87 (482)
T ss_pred ccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHH
Confidence 3555566665544332 22233444443322211 1 2223 89999999998888777764 47999999999999888
Q ss_pred HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCC--CCccc----ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 98 KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG--PAESL----FQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~--~~~~l----~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...... ..+-..+...|+.. +...+++||+|+.-+..... ..... .....+.++.++|++||+++..+
T Consensus 88 ~~~~~~-----~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 88 QVRNAK-----ERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred Hhcccc-----CCcceEEEEecchh-ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 765432 34678888888765 44557899999987765332 11111 12567889999999999977765
Q ss_pred C
Q psy4592 172 G 172 (197)
Q Consensus 172 ~ 172 (197)
.
T Consensus 162 l 162 (482)
T KOG2352|consen 162 L 162 (482)
T ss_pred e
Confidence 4
No 259
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.64 E-value=1.6e-05 Score=61.43 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC-----CCeEEEEcchHHHHhhcCCceeE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD-----PRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.+|||.-+|.|.-+..++.. + ++|+++|-+|-+..+.+.-+......... .+++++++|+.+++.....+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 38999999999988877754 3 79999999998877665432111000011 37999999999998855789999
Q ss_pred EEECCCCCCC
Q psy4592 134 IITDSSDPVG 143 (197)
Q Consensus 134 I~~~~~~~~~ 143 (197)
|+.||+++..
T Consensus 155 VY~DPMFp~~ 164 (234)
T PF04445_consen 155 VYFDPMFPER 164 (234)
T ss_dssp EEE--S----
T ss_pred EEECCCCCCc
Confidence 9999987653
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.62 E-value=0.00034 Score=56.38 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF 123 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 123 (197)
.+.+..+. ..++..++|.-.|.|+.+.++++..+.++++++|.||++++.+++.+.. ..+++.+++++..+.
T Consensus 10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----FDDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----CCTTEEEEES-GGGH
T ss_pred HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----ccceEEEEeccHHHH
Confidence 44555554 2455699999999999999999876669999999999999999998764 246899999887664
Q ss_pred Hh---hc--CCceeEEEECC
Q psy4592 124 MS---EH--QQEFDVIITDS 138 (197)
Q Consensus 124 ~~---~~--~~~~D~I~~~~ 138 (197)
.. .. ..++|.|+.|.
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 33 22 35899999985
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.61 E-value=0.00038 Score=59.96 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=75.0
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCC----CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cC
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPS----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQ 128 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~ 128 (197)
...+|+|-.||+|++.....+..+ ...++|.|+++....+|+.+.-.. +.+. +.....+|-..-... ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh--gi~~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH--GIEG-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh--CCCc-cccccccccccCCcccccCCc
Confidence 446999999999998776665322 367999999999999999885431 1121 345555553322111 23
Q ss_pred CceeEEEECCCCC-C--CCC-----------------cccc-cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 129 QEFDVIITDSSDP-V--GPA-----------------ESLF-QASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 129 ~~~D~I~~~~~~~-~--~~~-----------------~~l~-~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.+||+|+++||.. . ... ..-- ...|++.+...|+|||+..+....
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 6799999999864 1 110 0000 146899999999999876666544
No 262
>KOG1269|consensus
Probab=97.53 E-value=9.9e-05 Score=60.94 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.++..++|+|||-|....++.... .+.+++++.++.-+..+...... .. -..+..++.+|+.. .+..+..||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~--~~-l~~k~~~~~~~~~~-~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKK--AY-LDNKCNFVVADFGK-MPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHH--HH-hhhhcceehhhhhc-CCCCccccCcEE
Confidence 345589999999999998877653 47999999998776655443211 01 12244456666544 234467899998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+.-..-+.+.. ...+++++++++|||+++..
T Consensus 184 ~ld~~~~~~~~----~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVCHAPDL----EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEeecccCCcH----HHHHHHHhcccCCCceEEeH
Confidence 75443334443 67999999999999999985
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.51 E-value=0.00069 Score=48.27 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=61.9
Q ss_pred cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cC-CceeEEEECC-CCCCCCCcccc-----cHHHH
Q psy4592 83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQ-QEFDVIITDS-SDPVGPAESLF-----QASYF 154 (197)
Q Consensus 83 ~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~~D~I~~~~-~~~~~~~~~l~-----~~~~~ 154 (197)
+|+++||.++.++..++.+... + ...+++++..+=.. +.. -. ++.|+++.|. ..|.+ +..+. |-..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~--~-~~~~v~li~~sHe~-l~~~i~~~~v~~~iFNLGYLPgg-Dk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA--G-LEDRVTLILDSHEN-LDEYIPEGPVDAAIFNLGYLPGG-DKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT--T--GSGEEEEES-GGG-GGGT--S--EEEEEEEESB-CTS--TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc--C-CCCcEEEEECCHHH-HHhhCccCCcCEEEEECCcCCCC-CCCCCcCcHHHHHHH
Confidence 5889999999999999987652 1 22479998776333 333 23 4899999985 33443 22222 24688
Q ss_pred HHHHhhcCCCcEEEEEcCCCCcC-hhHHHHHHHHHH
Q psy4592 155 ELMSRALRPGGIVCSQAGTLWYS-LDCVGNTLQHCA 189 (197)
Q Consensus 155 ~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~ 189 (197)
+.+.++|+|||++.+..+..+.. .+....+.++++
T Consensus 76 ~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987553332 233444444443
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.46 E-value=0.00072 Score=51.33 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=60.6
Q ss_pred chhhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHHHhc----CCCCccEEEEEcCHHHHHH-HHhhcCCCCCCCCCCCe
Q psy4592 39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK----HPSVESAYLVEIDNRVIEV-SKKYLPGMAVGLSDPRL 113 (197)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~~~~~ 113 (197)
+...|++++..+ +|+.|+++|...|+.+..++. ..+.++|.+||++...... +.+..+ -.+++
T Consensus 20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp------~~~rI 87 (206)
T PF04989_consen 20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP------MSPRI 87 (206)
T ss_dssp HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc------ccCce
Confidence 344556555443 678999999999998876553 2355899999997655432 223222 23799
Q ss_pred EEEEcchHHH--Hhh---c--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 114 TVHVGDGFRF--MSE---H--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 114 ~~~~~d~~~~--~~~---~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
++++||..+. +.. . .....+|+.|....+. + . ..-|+....++++|+++++.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~-h--v--l~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHE-H--V--LAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----S-S--H--HHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHH-H--H--HHHHHHhCccCCCCCEEEEE
Confidence 9999987532 111 1 2344577777742222 1 1 44566789999999999875
No 265
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.45 E-value=0.0016 Score=49.64 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=79.8
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+...++.||||=-++++.++.+..+...+++.|+++.-++.|.++++..+ ..++++...+|....+.. .+.+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence 34456999999999999999998888899999999999999999987632 346899999998554433 45799999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
....-. .+ -.+++++-.+.|+.-=.++++
T Consensus 91 IAGMGG-----~l-I~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAGMGG-----TL-IREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EeCCcH-----HH-HHHHHHHhhhhhcCcceEEEC
Confidence 876421 11 156777777777765667775
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=97.44 E-value=0.0012 Score=53.02 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=45.0
Q ss_pred CCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCC-----cc-------cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 111 PRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPA-----ES-------LFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~-----~~-------l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+..++++|+.+.+.. .++++|+|++|||...... .. -+..+++.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4568999999997754 4679999999998643111 00 011468899999999999999864
No 267
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.43 E-value=0.0004 Score=55.44 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=74.0
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeEEEECC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDVIITDS 138 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~I~~~~ 138 (197)
+|+|+.||.|++...+...+ ...+.++|+++..++..+++++.. ++++|+.+..... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999988877664 467899999999999999987531 4556666544332 45799999999
Q ss_pred CCCC-C--------CC--cccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592 139 SDPV-G--------PA--ESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS 190 (197)
Q Consensus 139 ~~~~-~--------~~--~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~ 190 (197)
|... + .+ ..|+ .+++ .+.+.++|.=+++=|+..... ....+..+.+.+++
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~-~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~ 133 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEII-RILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEE 133 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHH-HHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHh
Confidence 8532 1 01 1111 2333 344556887555544422111 13455566665553
No 268
>KOG3201|consensus
Probab=97.39 E-value=0.00026 Score=51.36 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeEEE
Q psy4592 58 PKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDVII 135 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~I~ 135 (197)
+++||++|.|.-+++-. ++...+...|...|=+++.++..++....... .....+.+..-+..... .....+||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46999999997666544 44455667899999999988888775432100 01122322222211111 11245899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHh
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 190 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (197)
+.-+....... +.+.+.++..|+|.|..++.+.. +.+.++.+.+....
T Consensus 109 aADClFfdE~h----~sLvdtIk~lL~p~g~Al~fsPR---Rg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 109 AADCLFFDEHH----ESLVDTIKSLLRPSGRALLFSPR---RGQSLQKFLDEVGT 156 (201)
T ss_pred eccchhHHHHH----HHHHHHHHHHhCcccceeEecCc---ccchHHHHHHHHHh
Confidence 85443232221 67889999999999997775422 34556665555443
No 269
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.38 E-value=0.00089 Score=50.88 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=66.6
Q ss_pred CCCCCeEEEEeCCchHhHHHHhc--CCCCccEEEEEcCHHHHHHHHhhcCCCC-CCC-----------------------
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLK--HPSVESAYLVEIDNRVIEVSKKYLPGMA-VGL----------------------- 108 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~----------------------- 108 (197)
...|-++.|-+||+|++..-+.. ...-..+.+-|+|++++++|++|+..+. .++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 35677999999999998766543 3333689999999999999999864431 111
Q ss_pred --------------CCCCeEEEEcchHHHHhh----cCCceeEEEECCCCCCCCCcc-----cccHHHHHHHHhhcCCCc
Q psy4592 109 --------------SDPRLTVHVGDGFRFMSE----HQQEFDVIITDSSDPVGPAES-----LFQASYFELMSRALRPGG 165 (197)
Q Consensus 109 --------------~~~~~~~~~~d~~~~~~~----~~~~~D~I~~~~~~~~~~~~~-----l~~~~~~~~~~~~LkpgG 165 (197)
......+.+.|+.+.-.. .....|+|+.|.|......++ -....+++.++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 112466777777653321 133469999998854332211 123679999999996666
Q ss_pred EEEE
Q psy4592 166 IVCS 169 (197)
Q Consensus 166 ~l~~ 169 (197)
++++
T Consensus 209 VV~v 212 (246)
T PF11599_consen 209 VVAV 212 (246)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6666
No 270
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.0019 Score=51.54 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh----cCCc
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE----HQQE 130 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~ 130 (197)
++....+|.-.|.|+.+.++++.++ ..+++++|.||.+++.|++.+... .+++.++++...+.... ...+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCc
Confidence 4557999999999999999998765 456999999999999999987642 46899999987665432 1458
Q ss_pred eeEEEECC
Q psy4592 131 FDVIITDS 138 (197)
Q Consensus 131 ~D~I~~~~ 138 (197)
+|-|+.|.
T Consensus 97 vDGiL~DL 104 (314)
T COG0275 97 VDGILLDL 104 (314)
T ss_pred eeEEEEec
Confidence 99999974
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.35 E-value=0.00048 Score=53.62 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+.+.+|+|||||.==++.-+....+...+.++|||..+++...+.+... ..+.++...|..... ..+..|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~~--~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSDP--PKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTSH--TTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeeccC--CCCCcchhh
Confidence 5578999999998656655455555679999999999999999887653 367888888865432 246788877
Q ss_pred EC
Q psy4592 136 TD 137 (197)
Q Consensus 136 ~~ 137 (197)
.-
T Consensus 177 ll 178 (251)
T PF07091_consen 177 LL 178 (251)
T ss_dssp EE
T ss_pred HH
Confidence 54
No 272
>KOG1099|consensus
Probab=97.32 E-value=0.00032 Score=53.78 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCeEEEEeCCchHhHHHHhcCC------CCc---cEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH------
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP------SVE---SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR------ 122 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~------~~~---~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~------ 122 (197)
-++|+|++...|.|+..+.+.. ... .|++||+.+-. + -+.+.-+++|+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHHH
Confidence 4699999999999988777531 111 38999986521 1 1345555566542
Q ss_pred HHhh-cCCceeEEEECCC-CCCCC-C--cccc---cHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592 123 FMSE-HQQEFDVIITDSS-DPVGP-A--ESLF---QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 123 ~~~~-~~~~~D~I~~~~~-~~~~~-~--~~l~---~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 194 (197)
.+.. ..++.|+|++|.. .-.+. + ..+. -...+.....+|||||.|+- -.++.+...-++..++.+|..
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhhc
Confidence 2332 2569999999875 22221 1 1000 02234455689999999996 334455556677788888887
Q ss_pred ccC
Q psy4592 195 LHC 197 (197)
Q Consensus 195 v~~ 197 (197)
|.|
T Consensus 183 v~~ 185 (294)
T KOG1099|consen 183 VTC 185 (294)
T ss_pred eee
Confidence 754
No 273
>KOG1596|consensus
Probab=97.30 E-value=0.0024 Score=49.41 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCH----HHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--c
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDN----RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--H 127 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~ 127 (197)
.+++.+||=+|+++|.....+.. ..+...|++||.++ +.+..|+++ +|+-.++.||+-..+. .
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------CCceeeeccCCCchheeee
Confidence 45678999999999988777765 35667999999886 355566553 4677788887643222 1
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
-.-.|+||+|.+.+... .-..-++...||+||-|+++.-.++.
T Consensus 224 VgmVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred eeeEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccc
Confidence 34689999998643321 23445677889999999998754443
No 274
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.20 E-value=0.00022 Score=56.06 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=64.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCC------------CC-------------
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS------------DP------------- 111 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~------------~~------------- 111 (197)
++.++||||||.-.... +....-..+|+..|..+.-.+..++++..- +.++ ..
T Consensus 56 ~g~~llDiGsGPtiy~~-lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL-LSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGG-TTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh-hhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 45799999999854322 222212258999999999988888886542 1110 00
Q ss_pred Ce-EEEEcchHHHHhhc-----CCceeEEEECCCCCC-CCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 112 RL-TVHVGDGFRFMSEH-----QQEFDVIITDSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 112 ~~-~~~~~d~~~~~~~~-----~~~~D~I~~~~~~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+ +++.+|..+.-+.. .++||+|++...... ..+..-+ ...++++.++|||||.|++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y-~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY-RRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH-HHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH-HHHHHHHHHHcCCCcEEEEEE
Confidence 12 24455654322211 125999988775422 2332222 567889999999999999875
No 275
>KOG1331|consensus
Probab=97.12 E-value=0.00037 Score=55.02 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=72.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+..++|+|||.|-... .. +.+.+.++|+....+..+++.- .. ....+|+.. ++....+||.+++
T Consensus 45 ~gsv~~d~gCGngky~~---~~-p~~~~ig~D~c~~l~~~ak~~~--------~~--~~~~ad~l~-~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VN-PLCLIIGCDLCTGLLGGAKRSG--------GD--NVCRADALK-LPFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc---CC-CcceeeecchhhhhccccccCC--------Cc--eeehhhhhc-CCCCCCccccchh
Confidence 35689999999996532 22 5578999999988888776631 11 466678765 3455789999998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
-...|+.... .-....++++.+.|+|||...+++..
T Consensus 110 iavihhlsT~-~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLSTR-ERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhhH-HHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 8776664221 11367899999999999987776533
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.12 E-value=0.0063 Score=49.76 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+++++|+.+|+| .|.++..+++..+ .+|++++.+++-.+.|++.-. ..-+...| .+....-.+.+|+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA---------d~~i~~~~-~~~~~~~~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA---------DHVINSSD-SDALEAVKEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC---------cEEEEcCC-chhhHHhHhhCcEE
Confidence 567899999997 3456777777656 899999999999999988632 12222112 12222212349999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+...+ ...+....+.|+++|.+++....
T Consensus 234 i~tv~-----------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG-----------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC-----------hhhHHHHHHHHhcCCEEEEECCC
Confidence 97663 23557788999999999998754
No 277
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.11 E-value=0.0026 Score=48.54 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hh-hcCCceeEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MS-EHQQEFDVII 135 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~~D~I~ 135 (197)
+.++|||||=+...... ..+-..++.||+++.-- .+.+.|..+. ++ ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~~-------------------~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQHP-------------------GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCCC-------------------CceeeccccCCCCCCcccceeEEE
Confidence 36999999976554332 22335799999977221 2333444332 12 1357899999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcE-----EEEEcCCC------CcChhHHHHHHHH
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGI-----VCSQAGTL------WYSLDCVGNTLQH 187 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~-----l~~~~~~~------~~~~~~~~~~~~~ 187 (197)
+......-|.+.. .-+.+..+.+.|+|+|. +++....+ ....+.++.++..
T Consensus 110 ~SLVLNfVP~p~~-RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~ 171 (219)
T PF11968_consen 110 LSLVLNFVPDPKQ-RGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES 171 (219)
T ss_pred EEEEEeeCCCHHH-HHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh
Confidence 9877655554421 36799999999999999 88776443 2334455554443
No 278
>KOG2671|consensus
Probab=97.08 E-value=0.00052 Score=55.56 Aligned_cols=114 Identities=19% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHH-------HHhhcCCCCCCCCCCCeEEEEcchHHHHhhc
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV-------SKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (197)
.++++.|+|---|||++....++.+ +.+.|.|||-.++.. .+.|+.+-+ ....-+.+..+|...-.-..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchhh
Confidence 3677899999999999987777664 689999999888763 234444311 11224667777754322222
Q ss_pred CCceeEEEECCCCCCC------------------------CCcccc-----cHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 128 QQEFDVIITDSSDPVG------------------------PAESLF-----QASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~------------------------~~~~l~-----~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
...||+|++|||.... |....+ -...+.-..++|..||+++++..
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5689999999984331 000000 02345666799999999998864
No 279
>PRK13699 putative methylase; Provisional
Probab=96.93 E-value=0.0023 Score=49.67 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=42.9
Q ss_pred eEEEEcchHHHHhh-cCCceeEEEECCCCCCC----CCc----c---cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 113 LTVHVGDGFRFMSE-HQQEFDVIITDSSDPVG----PAE----S---LFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 113 ~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~----~~~----~---l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+++++|..+.+.. +++++|+|+.|||.... ... . -+..+++.+++|+|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 36788999998766 57899999999987431 000 0 112467889999999999988743
No 280
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.006 Score=49.81 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=62.7
Q ss_pred CCCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh-cCCce
Q psy4592 55 HPNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE-HQQEF 131 (197)
Q Consensus 55 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~~ 131 (197)
...|+++||+|.|.|.-..++..-.| ...++.+|.+|..-+....-.... .........+|...- ++. ..+.|
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----STEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----ccccCCCCCCccchhccCCCcccee
Confidence 34578999999998865554444333 257888999987655443322111 011112222222211 111 14567
Q ss_pred eEEEE-CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIIT-DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~-~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++++ +--.+.+....+ ..+++.+..++.|||.|++..
T Consensus 187 tl~i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 187 TLAIVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred ehhhhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEe
Confidence 77765 333333332222 348899999999999999864
No 281
>PTZ00357 methyltransferase; Provisional
Probab=96.84 E-value=0.0058 Score=54.04 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=69.2
Q ss_pred eEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHH---hhcCCCCCC--CCCCCeEEEEcchHHHHhhc---
Q psy4592 60 KVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSK---KYLPGMAVG--LSDPRLTVHVGDGFRFMSEH--- 127 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~---~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~--- 127 (197)
.|+.+|+|-|-+....++. .-..++++||.+|..+...+ ++...|... .-+..++++..|.+++-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999877655442 22368999999965332222 234455210 01357999999999873221
Q ss_pred -------CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCC----CcE
Q psy4592 128 -------QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP----GGI 166 (197)
Q Consensus 128 -------~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkp----gG~ 166 (197)
-+++|+||+..--..+.+ .| ++|.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN-EL-SPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN-EL-SPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc-cC-CHHHHHHHHHhhhhhcccccc
Confidence 137999999765444433 23 48999999999987 775
No 282
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.82 E-value=0.0015 Score=48.18 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=64.4
Q ss_pred EEEeCCchHhHHHHhcCCC-CccEEEEEc--CHHHHHHHH---hhcCCCCCCCCCCCeEE-EEcchHHHHhh---cCCce
Q psy4592 62 LIVGGGDGGVAREVLKHPS-VESAYLVEI--DNRVIEVSK---KYLPGMAVGLSDPRLTV-HVGDGFRFMSE---HQQEF 131 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~-~~~v~~ve~--~~~~~~~a~---~~~~~~~~~~~~~~~~~-~~~d~~~~~~~---~~~~~ 131 (197)
|-+|=|.-+++..+++..+ ...+++.-. ..++.+... .++..+ ....+.+ +-.|+...-.. ...+|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L----~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL----RELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH----hhcCCccccCCCCCcccccccccCCcC
Confidence 4578888888888887644 455555444 444443322 333322 1223333 33455543222 25789
Q ss_pred eEEEECCCCCCC----------CCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 132 DVIITDSSDPVG----------PAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 132 D~I~~~~~~~~~----------~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|.|+.|.|.... .+..|. ..||+.+.++|+++|.+.+....
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll-~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELL-RGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHH-HHHHHHHHHhcCCCCEEEEEeCC
Confidence 999999986441 111222 67999999999999999987643
No 283
>KOG1253|consensus
Probab=96.79 E-value=0.0019 Score=54.70 Aligned_cols=104 Identities=20% Similarity=0.313 Sum_probs=81.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCcee
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFD 132 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D 132 (197)
++-+|||-=+++|.-++..++. .+..++++-|.+++.++..+++..... ....++....|+...+-.. ...||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhccccccccc
Confidence 4568999999999877666654 344689999999999999999876531 2356888889988765443 37899
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|=.||+- .. ..|++.+.+.++.||.+++..
T Consensus 186 vIDLDPyG---s~-----s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLDPYG---SP-----SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecCCCC---Cc-----cHHHHHHHHHhhcCCEEEEEe
Confidence 99999852 21 459999999999999999875
No 284
>PHA01634 hypothetical protein
Probab=96.72 E-value=0.0046 Score=43.19 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
-..++|+|||.+-|..+++.+..+. ..|+++|.+|...+.++.+.... .-+.-..+- ..++..-++||+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n------nI~DK~v~~--~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF------NICDKAVMK--GEWNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh------eeeeceeec--ccccccCCCcceEE
Confidence 3567999999999999999887754 79999999999999998876531 011111111 11333457899888
Q ss_pred ECC
Q psy4592 136 TDS 138 (197)
Q Consensus 136 ~~~ 138 (197)
+|.
T Consensus 98 iDC 100 (156)
T PHA01634 98 MDC 100 (156)
T ss_pred EEc
Confidence 876
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.72 E-value=0.025 Score=46.70 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHH-hhc-CCceeE
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFM-SEH-QQEFDV 133 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~-~~~-~~~~D~ 133 (197)
+.+|+.+|+|. |.++..+++..+..+++++|.+++-+++|++.... ..+..... +..... ... ...+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 34899999996 44446667777778999999999999999996532 11111111 222222 222 236999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++-..- ....++++.++++|+|.+++....
T Consensus 242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 242 VIEAVG----------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEECCC----------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 985442 256889999999999999987643
No 286
>KOG1098|consensus
Probab=96.68 E-value=0.0034 Score=54.57 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=72.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-----hh--c
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-----SE--H 127 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~ 127 (197)
.+.+.|||+||..|+|.....+..| ..-|+|||+-|-- ..+++.-++.|+..-. .. .
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 4667999999999999887776544 3578999997632 1234555555554321 11 1
Q ss_pred CCceeEEEECCCCCCCCCc-------ccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCc
Q psy4592 128 QQEFDVIITDSSDPVGPAE-------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR 194 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~-------~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 194 (197)
.-+.|+|++|.+-..+..+ ..++-..++.+...|..||.|+.-+.. .+....++..+.+.|..
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr----s~dy~~ll~v~~qLf~k 177 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR----SEDYNGLLRVFGQLFKK 177 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc----CCcchHHHHHHHHHHHH
Confidence 3467999998864333211 111233556667899999998875543 33334444444444433
No 287
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.60 E-value=0.0028 Score=45.31 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592 46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS 125 (197)
Q Consensus 46 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (197)
.+.+.......-+.-|||+|.|+|..=-.+.+..+...|.++|-.-..-. .. -++.-.++.||+++.++
T Consensus 17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp---~~--------~P~~~~~ilGdi~~tl~ 85 (160)
T PF12692_consen 17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP---SS--------TPPEEDLILGDIRETLP 85 (160)
T ss_dssp HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G---GG-----------GGGEEES-HHHHHH
T ss_pred HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC---CC--------CCchHheeeccHHHHhH
Confidence 34444333333446899999999998888888888889999996322211 11 12445689999998877
Q ss_pred h---cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 126 E---HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 126 ~---~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
. ...+.-++..|.-.+...........+-..+..+|.|||.++-
T Consensus 86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 5 2556777877774333211111112233456789999999885
No 288
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.01 Score=44.64 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=62.7
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcC-CCCccEEEEEcCHHHH----HHHHh--hcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVI----EVSKK--YLPGMAVGLSDPRLTVHVGDGFRFMS 125 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~ve~~~~~~----~~a~~--~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (197)
...+.+.+|+|+=.|.|.++..+... .+...|+++-.++... +-.+. -..+. ...|.+.+-.+.....
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYANVEVIGKPLVALG- 118 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhhhhhhCCcccccC-
Confidence 33467789999999999999988764 3334665554332211 10010 01000 1124444433332222
Q ss_pred hcCCceeEEEECCCCCCCCCcc---cccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 126 EHQQEFDVIITDSSDPVGPAES---LFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~~~~~---l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
..++.|+++.+...|...... -....+...+++.|||||++++.-
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 245667776644433321111 122678899999999999999863
No 289
>KOG0024|consensus
Probab=96.40 E-value=0.03 Score=45.36 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE--EEcchHHHHhhc--CCc
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV--HVGDGFRFMSEH--QQE 130 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~--~~~ 130 (197)
+.+.+||.+|+|. |-.+..+++..+..+|+.+|++++-+++|++ +..- .-.+.+- ...+..+.+... ...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~----~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT----VTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe----EEeeccccccHHHHHHHHHhhccccC
Confidence 4678999999995 5555667777787899999999999999999 4321 0001111 112333333332 245
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+.+...-. +..++.+...++.+|.+++..
T Consensus 243 ~d~~~dCsG~----------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCSGA----------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEccCc----------hHHHHHHHHHhccCCEEEEec
Confidence 8888754411 345677788999999977764
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.40 E-value=0.016 Score=45.88 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~ 135 (197)
.+++|+.+|--. -.+.+++..+-..++.++|||+..++...+...+. ...+++.+.-|.++.++. ...+||+.+
T Consensus 152 ~gK~I~vvGDDD-Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDD-LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCch-hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 567899999543 33333333333379999999999999888876653 345688999998876665 257999999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCC---cEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPG---GIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg---G~l~~~~ 171 (197)
.|||.....- ..|+..=-..||.. |+|.+..
T Consensus 227 TDPpeTi~al-----k~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 TDPPETIKAL-----KLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred cCchhhHHHH-----HHHHhccHHHhcCCCccceEeeee
Confidence 9997422110 34555555677777 7777653
No 291
>KOG2798|consensus
Probab=96.40 E-value=0.009 Score=48.04 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHH-------HHHhh-----cCCCC---------CCC-------
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE-------VSKKY-----LPGMA---------VGL------- 108 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~-------~a~~~-----~~~~~---------~~~------- 108 (197)
.+.+||.-|||.|.++..++..+..++ |=|.+--|+= ..+.. .+..+ .++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~q--GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQ--GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccccc--ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 345899999999999999887754333 3254443331 11110 00000 000
Q ss_pred --------CCCCeEEEEcchHHHHhhc--CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 109 --------SDPRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 109 --------~~~~~~~~~~d~~~~~~~~--~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
.....++..||..+..... .+.||+|+.+.+.....+- -++++.+.++|||||+.+=
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni----leYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI----LEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH----HHHHHHHHHhccCCcEEEe
Confidence 0012223346655544432 3479999988654333332 5799999999999998663
No 292
>KOG2793|consensus
Probab=96.37 E-value=0.01 Score=46.48 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC--CCeEEEE---cchHHHHhhcCCc-
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--PRLTVHV---GDGFRFMSEHQQE- 130 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~- 130 (197)
++.+||++|+|+|-.+..++.... ..+..-|+ +..++..+.+.......++. ..+.+.. +++.+. ....+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc-ceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhccCCc
Confidence 456899999999987777777544 56666665 33444333331110000011 1333332 222221 111233
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
+|+|++.-........ +.+...++..|..+|.+++
T Consensus 163 ~DlilasDvvy~~~~~----e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 163 FDLILASDVVYEEESF----EGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred ccEEEEeeeeecCCcc----hhHHHHHHHHHhcCCeEEE
Confidence 8999984432222221 4577888899999995544
No 293
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.014 Score=47.56 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=52.5
Q ss_pred EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCC
Q psy4592 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~ 140 (197)
|+|+.||.|++..-+...+ ...+.++|+++...+..+.|++. .++.+|+.+........+|+++..+|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 5899999999998887664 34667899999999999988741 345578777544333468999998875
No 294
>KOG1501|consensus
Probab=96.27 E-value=0.0059 Score=51.21 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=43.2
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 118 (197)
..|||||+|||-++....+.+ ...+|++|.-..|.+.|++-..+. +. .++++++.-
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~-SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GM-SDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CC-ccceeeecc
Confidence 479999999998887766665 468999999999999999976652 22 356777643
No 295
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.26 E-value=0.043 Score=44.93 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+||..|+| .|.++..+++..+..++++++.+++-++.+++. .. ..-+.....+..+.... .+.+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga------~~vi~~~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA------DKLVNPQNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC------cEEecCCcccHHHHhcc-CCCCCEEE
Confidence 46799999875 233445566665544789999999999988773 21 00111111233332222 24589888
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-..- . ...++.+.+.|+++|.++...
T Consensus 241 d~~G-----~-----~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSG-----H-----PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 5431 1 346678889999999999865
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.23 E-value=0.051 Score=45.35 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc-hHHHHhh-c-CCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD-GFRFMSE-H-QQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~-~-~~~~ 131 (197)
.++.+||++|+|. |..+..+++..+..++++++.+++..+.+++.... ..+.....+ ..+.+.. . ...+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4557999999987 77777788776644699999999999998875321 112222221 2222222 2 2369
Q ss_pred eEEEECCCCCCC-----C------CcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVG-----P------AESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~-----~------~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+........ . .+.-.+...++.+.+.|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 998875321100 0 000001457788999999999998864
No 297
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.20 E-value=0.012 Score=45.39 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCeEEEEeCCchHhHHHHhc-CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh---cCCce
Q psy4592 57 NPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE---HQQEF 131 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~---~~~~~ 131 (197)
...++||||.|.-.+=-.+.- .++ -+.++.|+|+..++.|+..+... ..+. ..+++.. -|-...++. ..+.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N-~~l~-~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISAN-PGLE-RAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcC-cchh-hheeEEeccCcccccccccccccee
Confidence 445899999887554333332 233 68999999999999999887642 1111 1234332 221111221 25789
Q ss_pred eEEEECCCCCCC
Q psy4592 132 DVIITDSSDPVG 143 (197)
Q Consensus 132 D~I~~~~~~~~~ 143 (197)
|+.++|||+|.+
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999998775
No 298
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.19 E-value=0.011 Score=50.36 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=60.7
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEE-cCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
-+.|+|..+|.|+++.+|.+. +..-..+|- ..++.+.....+ .. -+ + --|..+.++..+.+||+|.+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydR-GL-----IG--~---yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDR-GL-----IG--V---YHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhc-cc-----ch--h---ccchhhccCCCCcchhheeh
Confidence 468999999999999998764 322222222 223444433332 00 11 1 11333434444679999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+..+....+. -.-...+-++-|+|+|+|.+++.
T Consensus 434 ~~lfs~~~~r-C~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 434 DGLFSLYKDR-CEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhhccc-ccHHHHHHHhHhhcCCCceEEEe
Confidence 8765443322 11266888999999999999984
No 299
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.11 E-value=0.011 Score=47.92 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=73.1
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCC-ceeEEEECC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ-EFDVIITDS 138 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~D~I~~~~ 138 (197)
+++|+.||.|++...+.+.+ ...+.++|+++...+..+.|++ ....+|+.+.-...-. .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 78999999999998888775 4688999999999999998862 6777888765433212 599999998
Q ss_pred CCCC-C----------CCcccccHHHHHHHHhhcCCCcEEEEEcCCCCc--ChhHHHHHHHHHHh
Q psy4592 139 SDPV-G----------PAESLFQASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCAS 190 (197)
Q Consensus 139 ~~~~-~----------~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~ 190 (197)
|... + +...|+ .++++ +.+.++|.-+++=|+..... ....++.+.+.|.+
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~-~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLR-IVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEE 132 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHH-HHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHH
T ss_pred CCceEeccccccccccccchhh-HHHHH-HHhhccceEEEecccceeeccccccccccccccccc
Confidence 7532 2 111122 23443 44567898777766533221 12446666666654
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=96.10 E-value=0.014 Score=46.84 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=44.0
Q ss_pred HHHHhhcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC
Q psy4592 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG 103 (197)
Q Consensus 45 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~ 103 (197)
+++..+..+.-.++..|||--+|+|..+.++.+.. -+..|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 44444433333567899999999998887766664 5899999999999999998753
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.04 E-value=0.0098 Score=45.40 Aligned_cols=42 Identities=26% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~ 99 (197)
.++..|||.-||+|..+.++.+.. -+..++|++++..+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 567899999999999888877765 479999999999999874
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.94 E-value=0.11 Score=45.19 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=65.4
Q ss_pred CCCCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCC--------eEEEEcchHH----
Q psy4592 56 PNPKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR--------LTVHVGDGFR---- 122 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~d~~~---- 122 (197)
..+.+|+.+|+|.=+ .+...++..+ ..|+++|.+++.++.+++.-.... ..+... .+-...+..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v-~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFL-ELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEE-EeccccccccccchhhhcchhHHHHHHH
Confidence 357899999999654 4455666666 589999999999999887311100 000000 0000011111
Q ss_pred HHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 123 FMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 123 ~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
.+......+|+||.....+..+.+. -+.+++.+.+||||+++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~----lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPK----LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcc----hHHHHHHHhcCCCCEEEEEcc
Confidence 1111124699999876544433332 124889999999999887764
No 303
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.042 Score=45.01 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=56.1
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcC-C-ceeEEEE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQ-Q-EFDVIIT 136 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~~D~I~~ 136 (197)
.+++|+.||.|++...+...+ ...+.++|++|..++.-+.+++. ..++..|+.+...... . .+|+|+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEEe
Confidence 589999999999998777665 46889999999999999998752 4566677766544321 2 7899999
Q ss_pred CCCC
Q psy4592 137 DSSD 140 (197)
Q Consensus 137 ~~~~ 140 (197)
.+|+
T Consensus 74 GpPC 77 (328)
T COG0270 74 GPPC 77 (328)
T ss_pred CCCC
Confidence 9885
No 304
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.79 E-value=0.058 Score=46.28 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh------------
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS------------ 125 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------ 125 (197)
.-+++|+.||.|++...+...+ ...+.++|+++...+.-+.|+.. .+....+.+|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 4599999999999998887664 46788999999999988888742 1233444556554321
Q ss_pred ----hcCCceeEEEECCCC
Q psy4592 126 ----EHQQEFDVIITDSSD 140 (197)
Q Consensus 126 ----~~~~~~D~I~~~~~~ 140 (197)
......|+++..+|+
T Consensus 161 ~~~~~~~p~~DvL~gGpPC 179 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPC 179 (467)
T ss_pred hhhhccCCCCCEEEEcCCC
Confidence 112368999998875
No 305
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.78 E-value=0.14 Score=42.76 Aligned_cols=101 Identities=20% Similarity=0.374 Sum_probs=57.5
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+|+.+|+|. |..+...++..+ .+++++|.+++-.+.+...+.. .+.....+..+ +...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~-l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYE-IEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHH-HHHHHccCCEEE
Confidence 456899999983 344444455555 5899999998876666554321 12222222222 222235689999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.....+....+.+.+.+.+ +.++|+++++-.+
T Consensus 236 ~a~~~~g~~~p~lit~~~l----~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLV----AQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHH----hcCCCCCEEEEEe
Confidence 8654333323334444444 5578888777543
No 306
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.65 E-value=0.037 Score=40.38 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCe-EEEEcchHHHHhhcCCceeEEEE
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL-TVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+++++.+|+..= +...++-..+..++..||.++--++ .. + . +++ ++...|...-+....++||++.+
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~--~~-~-------~-dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQ--EE-F-------R-DRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccC--cc-c-------c-cccccccHHHHHHHHHHhhccchhhhe
Confidence 468899998753 3344444445578999998752111 00 0 1 122 22233443334444678999887
Q ss_pred CCCC-CCC------CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSD-PVG------PAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~-~~~------~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-... |.+ |-...=..+.+.++.++|||||.+++.+
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 5543 322 1111113567889999999999999875
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.64 E-value=0.034 Score=38.64 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=62.3
Q ss_pred CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-C-CceeEEEECCCCCCCC
Q psy4592 67 GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-Q-QEFDVIITDSSDPVGP 144 (197)
Q Consensus 67 G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~D~I~~~~~~~~~~ 144 (197)
|.|.++..+++..+ .++++++.++.-.+.+++.-.. .-+.....|..+.+... . ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc-------ccccccccccccccccccccccceEEEEecC-----
Confidence 45778888888766 8999999999999999885211 11122222344444432 2 47999986552
Q ss_pred CcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 145 AESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 145 ~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
....++.+.++|+++|.+++.....
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1568899999999999999986543
No 308
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.35 E-value=0.46 Score=36.37 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=53.7
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCch----HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc
Q psy4592 44 SEMIAFLPLCSHPNPKKVLIVGGGDG----GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119 (197)
Q Consensus 44 ~~~~~~~~~~~~~~~~~vLdiG~G~G----~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d 119 (197)
.+++..++.- -+.+.+++..++.| .++++.+.+....+++.|-.+++-....++.+... + ..+.++|+.++
T Consensus 30 aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~-~~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--G-LSDVVEFVVGE 104 (218)
T ss_pred HHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--c-ccccceEEecC
Confidence 4555555432 35578888876544 23344333333367788888877665566655421 1 12356999998
Q ss_pred hH-HHHhhcCCceeEEEECCC
Q psy4592 120 GF-RFMSEHQQEFDVIITDSS 139 (197)
Q Consensus 120 ~~-~~~~~~~~~~D~I~~~~~ 139 (197)
.. +.++. -...|+++.|.-
T Consensus 105 ~~e~~~~~-~~~iDF~vVDc~ 124 (218)
T PF07279_consen 105 APEEVMPG-LKGIDFVVVDCK 124 (218)
T ss_pred CHHHHHhh-ccCCCEEEEeCC
Confidence 54 44544 467999999983
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.34 E-value=0.2 Score=43.45 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=61.8
Q ss_pred CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC-------CC-eEEEEcchH----HH
Q psy4592 57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD-------PR-LTVHVGDGF----RF 123 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~-------~~-~~~~~~d~~----~~ 123 (197)
++.+|+.+|+|.=+.. ..+++..+ ..++++|.+++..+.++.. ..-.-..+. .. .+....+.. +.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4679999999865443 44555544 5799999999988888762 210000000 00 001111111 11
Q ss_pred HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+......+|+|+.....+..+.+.+.+ +++.+.+|||++++=.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit----~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLIT----EEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeeh----HHHHhhCCCCCEEEEe
Confidence 222245799998877555555555554 5556788898887744
No 310
>KOG2078|consensus
Probab=95.32 E-value=0.065 Score=44.92 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS 125 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (197)
+.+..|.|+.||-|-++.-+++.+ +.+++-|.+|++++..+.+++.. -.+..+++++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lN--kv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLN--KVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhcccc--ccchhheeeecccHHHHhh
Confidence 556789999999998887777665 99999999999999999998752 2344459999999999985
No 311
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.31 E-value=0.17 Score=41.62 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEc---CHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEI---DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 131 (197)
..+.+||.+|+|. |.++..+++..+ .++++++. +++-.+.+++. .. ..+.....+..+ .. ....+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~-Ga-------~~v~~~~~~~~~-~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEEL-GA-------TYVNSSKTPVAE-VK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHc-CC-------EEecCCccchhh-hh-hcCCC
Confidence 3567999999863 345555666655 47888886 67777777653 21 111111112111 11 13468
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+-..- . ...+..+.+.|+++|.+++..
T Consensus 240 d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATG-----V-----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcC-----C-----HHHHHHHHHHccCCcEEEEEe
Confidence 98885441 1 346788899999999988764
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.25 E-value=0.21 Score=41.42 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=60.1
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~ 133 (197)
..+.+||..|+|. |.++..+++..+...+++++.+++-.+.+++. .. ..-+.....|..+.+.. ..+.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA------TATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC------ceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4567999998753 33445566665534699999999998888763 21 11111111232222222 2336899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-... . ...++.+.+.|+++|.++...
T Consensus 263 vid~~G-----~-----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAG-----S-----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCC-----C-----hHHHHHHHHHHhcCCEEEEEc
Confidence 985431 1 346678889999999988764
No 313
>PRK13699 putative methylase; Provisional
Probab=95.22 E-value=0.052 Score=42.10 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP 102 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~ 102 (197)
.++..|||--||+|..+.+..+.. .+..++|++++..+.+.+++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 466799999999999888776664 588899999999999988764
No 314
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=95.19 E-value=0.048 Score=48.48 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=43.4
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhhCCccc
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~f~~v~ 196 (197)
.-++|+|++|+-.....-........-+.+.++|.++|.+++-+.-...- ..-..++..+.+.|+.|.
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F~~V~ 480 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYFKSVE 480 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhcCceE
Confidence 34899999998543322211122344556678999999999976432221 223367788888898875
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.15 E-value=0.25 Score=40.65 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=60.1
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D 132 (197)
.++.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. .. ..-+.....|..+.+.. . ...+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567999998753 33445566665534599999999988888653 21 11112222233332322 2 23589
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+-..- . ...++.+.+.++++|++++..
T Consensus 248 ~vid~~g-----~-----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVIDAVG-----R-----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEEECCC-----C-----HHHHHHHHHHhccCCEEEEEC
Confidence 8884331 1 345677888999999998764
No 316
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.08 E-value=0.33 Score=39.35 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=68.7
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+|..||.|. |..+.-++.-.+ ..|+.+|.|.+-++.....+. .+++........+ ...-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~i-ee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNI-EEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHH-HHHhhhccEEE
Confidence 356888999885 334444554444 799999999988877766553 3677777776553 33356799999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
...-.+....+.|. .+++.+.||||++++=.
T Consensus 237 gaVLIpgakaPkLv----t~e~vk~MkpGsVivDV 267 (371)
T COG0686 237 GAVLIPGAKAPKLV----TREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEEEecCCCCceeh----hHHHHHhcCCCcEEEEE
Confidence 87655555555554 46667789999988754
No 317
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.07 E-value=0.39 Score=37.79 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCCCeEEEEeCCchHhHHHH---hcCC--CCccEEEEEcCH--------------------------HHHHHHHhhcCCC
Q psy4592 56 PNPKKVLIVGGGDGGVAREV---LKHP--SVESAYLVEIDN--------------------------RVIEVSKKYLPGM 104 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l---~~~~--~~~~v~~ve~~~--------------------------~~~~~a~~~~~~~ 104 (197)
.-+..|+++|+-.|+.+..+ ++.. ...++.+.|.-+ ...+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 34579999999999766443 2221 234677777211 1344556666542
Q ss_pred CCCCCCCCeEEEEcchHHHHhh-cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 105 AVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 105 ~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
++..+++.++.|...+.++. +.+++-++..|.-.. -.+...|+.++..|.|||++++-
T Consensus 153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEES
T ss_pred --CCCcccEEEECCcchhhhccCCCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEe
Confidence 23346899999999887765 345677777666211 11367899999999999999983
No 318
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.95 E-value=0.4 Score=39.41 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~-~~~~~ 131 (197)
.++.+||..|+ |.|.++..+++..+ .++++++.+++-.+.+++.+.. ..-+..... +..+.+.. ..+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 45679999997 35667777777765 5788889888888877643321 111221111 33333322 23468
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+-..- ...+..+.+.|+++|.+++..
T Consensus 230 D~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG-----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC-----------HHHHHHHHHHhccCCEEEEEC
Confidence 99984331 235678889999999998764
No 319
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.95 E-value=0.1 Score=37.91 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=61.1
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCC-CCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGL-SDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~-~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+|..||+|.++.+.+........+|+....+++.++..++.-.... .+. -.+++. ...|..+.+. ..|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~~----~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEALE----DADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHHT----T-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHhC----cccEEEe
Confidence 4778999998877664432223799999999988887766432110 000 113454 3567666553 4799998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
..|... -+++++++...++++-.++...
T Consensus 76 avPs~~-------~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 76 AVPSQA-------HREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -S-GGG-------HHHHHHHHTTTSHTT-EEEETS
T ss_pred cccHHH-------HHHHHHHHhhccCCCCEEEEec
Confidence 775211 1678899999997776666643
No 320
>KOG1227|consensus
Probab=94.92 E-value=0.017 Score=46.19 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CCCeEEEEeCCchHhHH-HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAR-EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+..|.|+-+|-|+++. .+.+. +...++++|.+|-.++..+++.... . ...+..++.+|-+. .......|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N--~-V~~r~~i~~gd~R~--~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEAN--N-VMDRCRITEGDNRN--PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhc--c-hHHHHHhhhccccc--cCccccchhee
Confidence 34789999999999998 45555 4579999999999999999987642 1 11234444555322 12245677777
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGI 166 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~ 166 (197)
...- |.. ++-...+.++|||.|-
T Consensus 268 LGLl----PSs----e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 268 LGLL----PSS----EQGWPTAIKALKPEGG 290 (351)
T ss_pred eccc----ccc----ccchHHHHHHhhhcCC
Confidence 6542 221 3344567788888876
No 321
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.27 Score=38.60 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=66.5
Q ss_pred CCCeEEEEeCCchHhHHHHhcC----CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCcee
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKH----PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD 132 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 132 (197)
.+...+|+|+|+..-++.+... ....+.+-||++..+++...+.+.. .+..-.+.-+++|....+...+..--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~---~y~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR---EYPGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH---hCCCCeEeehhhhHHHHHhcccCCCe
Confidence 3679999999998766665543 3336889999999988744333221 01122355577887765554322112
Q ss_pred EEEE--CCCCCC-CCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIIT--DSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~--~~~~~~-~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-+++ ...... .|.+ ...|+.++...|+||-++++-+
T Consensus 155 Rl~~flGStlGN~tp~e---~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVFLGSTLGNLTPGE---CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEEecccccCCChHH---HHHHHHHHHhcCCCcceEEEec
Confidence 2222 222111 1222 2569999999999999999854
No 322
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.82 E-value=0.23 Score=40.06 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+||.+|+| .|.++..+++..+...+.++|.+++.++.+++.. . + |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-~---------i-----~~~~~---~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-V---------L-----DPEKD---PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-c---------c-----Chhhc---cCCCCCEEE
Confidence 45689999875 3445555666666445778888887766665421 0 0 10000 124689888
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-..- . ...++.+.+.|+++|++++..
T Consensus 206 d~~G-----~-----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASG-----D-----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCC-----C-----HHHHHHHHHhhhcCcEEEEEe
Confidence 5431 1 346788899999999999764
No 323
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.82 E-value=0.23 Score=37.23 Aligned_cols=124 Identities=22% Similarity=0.223 Sum_probs=62.4
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCC-CC--------CCCCeEEEEcchHHHHhhcCC
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV-GL--------SDPRLTVHVGDGFRFMSEHQQ 129 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~--------~~~~~~~~~~d~~~~~~~~~~ 129 (197)
++|-.+|.|-=++..++.....+.+|+++|++++.++...+-.....+ ++ ...++.+ ..|..+.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~---- 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIK---- 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHH----
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhh----
Confidence 367788888555444433222237999999999998887764322110 00 0112322 244444333
Q ss_pred ceeEEEECCCCCCCCCcc--c-ccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHHHHHH
Q psy4592 130 EFDVIITDSSDPVGPAES--L-FQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQH 187 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~--l-~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~ 187 (197)
..|+++...+.+...+.. + +-.+.++.+.+.|+++-.+++.+.-+.- ..+.+..+++.
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 379898877655432211 1 1156788889999998888887643322 22244444443
No 324
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.71 E-value=0.00099 Score=45.26 Aligned_cols=40 Identities=33% Similarity=0.499 Sum_probs=27.4
Q ss_pred ceeEEEECCCCCCC----CCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 130 EFDVIITDSSDPVG----PAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 ~~D~I~~~~~~~~~----~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+||+|++-....|. .+..+ ..+|+.+++.|+|||.|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl--~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGL--KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHH--HHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHH--HHHHHHHHHhhCCCCEEEEeC
Confidence 48999875543332 12222 569999999999999999974
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.68 E-value=0.41 Score=38.59 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=60.8
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeE
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~ 133 (197)
..+.+||..|+| .|..+..+++..+ .++++++.+++..+.+++. .. . .-+.....+..+.+. .....+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA-----D-EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC-----C-EEEcCCCcCHHHHHHHhcCCCceE
Confidence 445689998765 3666677777655 6799999999988888653 11 0 011111112222221 12457998
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.... ....++++.+.|+++|.++...
T Consensus 236 vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVG----------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEC
Confidence 875431 0346788899999999998764
No 326
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.64 E-value=0.4 Score=39.26 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCCeEEEEeCCchH-hHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGDGG-VAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~-~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
+.+.+||.+|+|.=+ ++..+++. .+..+++++|.+++-++.+++ +.. . ....+ +.. ...+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~--------~--~~~~~----~~~-~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE--------T--YLIDD----IPE-DLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc--------e--eehhh----hhh-ccCCcE
Confidence 456799999986433 33344543 344689999999988888865 221 1 11111 111 124898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-..- .. .....++.+.+.|+++|++++..
T Consensus 226 viD~~G----~~---~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AFECVG----GR---GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEECCC----CC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence 884331 10 01456788899999999998764
No 327
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.64 E-value=0.075 Score=39.12 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--------cch-------
Q psy4592 57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--------GDG------- 120 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~d~------- 120 (197)
+|.+|+.+|.|.=+.+ ..+++..+ .+++.+|..++..+..+..... .+.+.. -|-
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAY--------FIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE--------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCc--------eEEEcccccccccccchhhhhHHH
Confidence 5679999999864443 44555555 7999999999887776654321 122200 011
Q ss_pred ---HHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 121 ---FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 121 ---~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...+...-..+|+|+.+...+....+.+.+.+-+ +.|+|+-+++=.+
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~----~~m~~gsvIvDis 139 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMV----KSMKPGSVIVDIS 139 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHH----HTSSTTEEEEETT
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHh----hccCCCceEEEEE
Confidence 1111112346899998776555566677775554 4567777666443
No 328
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.60 E-value=1.1 Score=35.52 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=57.4
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCceeE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D~ 133 (197)
++.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++.-. + .-+.. .+..+.+. . ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~~--~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------T-ALAEP--EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------c-EecCc--hhhHHHHHHHhCCCCCCE
Confidence 557999998753 2344445565553458889999988888877421 0 00111 11111111 1 1246899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-..- . ...++.+.+.|+++|.++...
T Consensus 191 vid~~G-----~-----~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSG-----A-----TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCC-----C-----hHHHHHHHHHhcCCCEEEEec
Confidence 884331 1 346788899999999998765
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.60 E-value=0.53 Score=36.40 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH-hhcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM-SEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~ 133 (197)
.++.+||..|+|+ |.....+++..+ .++++++.+++..+.+++.... .-+.....+....+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567999999985 556666666655 7899999998887777653210 01111111211111 112457999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++..... ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVGG----------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCCC----------HHHHHHHHHhcccCCEEEEEcc
Confidence 9865421 1356778889999999987653
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.47 E-value=0.7 Score=37.53 Aligned_cols=99 Identities=22% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~ 133 (197)
..+.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++. .. ..-+.....+........ ...+|+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GA------DFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4567999998742 22334455555533399999999888888653 21 011111112222222222 246999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-... . ...+..+.+.|+++|.+++..
T Consensus 235 vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIECSG-----N-----TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 985432 1 345577788999999998764
No 331
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.44 E-value=0.46 Score=38.64 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=59.1
Q ss_pred CeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeEEE
Q psy4592 59 KKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVII 135 (197)
Q Consensus 59 ~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~I~ 135 (197)
.+||..|+ |.|..+..+++..+..++++++-+++-.+.+++.+.. ..-+.....+..+.+.. ....+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999986 4566666677765533799999888887777664431 11111112233333322 235699998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.... ...+..+.+.|+++|.++...
T Consensus 230 d~~g-----------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVG-----------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCC-----------cHHHHHHHHHhccCCEEEEEe
Confidence 4331 113477888999999988753
No 332
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.23 E-value=0.29 Score=42.57 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCeEEEEeCCchHhHHHHhcCC----CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP----SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD 132 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D 132 (197)
...+.|..||+|++.....+.. ....+++-|..+++...++.+.... +...+......+|-...... ...+||
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~--~~~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH--NIDYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc--CCCccccCcccCCcCCCccccccccCC
Confidence 3689999999999876543311 2257899999999999998874210 11112233333342211111 135699
Q ss_pred EEEECCCCCC--C----CC----cc------c-----ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPV--G----PA----ES------L-----FQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~--~----~~----~~------l-----~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.|++|||... . ++ .. + ..-.++..+...|++||...+..
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 9999997522 1 00 00 0 11357888899999999755543
No 333
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.13 E-value=0.77 Score=36.04 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=66.5
Q ss_pred EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeEEEECC
Q psy4592 62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDVIITDS 138 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~I~~~~ 138 (197)
|..-.|+=.++..+++.. .+.+.+|+-|+-.+..++++.. ..+++++..|+.+.+... ..+==+|++||
T Consensus 62 l~~YPGSP~ia~~llR~q--Drl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ--DRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TT--SEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCcc--ceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 667777777777766543 6999999999999999888763 468999999999876652 33445899999
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
+.....+..- -.+.+.++.+.. +.|+++++- |.......+.+.+.+++.
T Consensus 134 pYE~~~dy~~-v~~~l~~a~kR~-~~G~~~iWY--Pi~~~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 134 PYEQKDDYQR-VVDALAKALKRW-PTGVYAIWY--PIKDRERVDRFLRALKAL 182 (245)
T ss_dssp ---STTHHHH-HHHHHHHHHHH--TTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred CCCCchHHHH-HHHHHHHHHHhc-CCcEEEEEe--ecccHHHHHHHHHHHHhc
Confidence 7644433211 134555555553 566666542 445566667777777654
No 334
>KOG2912|consensus
Probab=94.01 E-value=0.31 Score=39.55 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=49.6
Q ss_pred EEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH-Hhh----c-CCceeEE
Q psy4592 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF-MSE----H-QQEFDVI 134 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~----~-~~~~D~I 134 (197)
-+|||+|.-.+--.+.....+-...++|++...++.|+.+.++. + ....+++++...... +.. . ...||++
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn--~-lss~ikvV~~~~~ktll~d~~~~~~e~~ydFc 182 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN--N-LSSLIKVVKVEPQKTLLMDALKEESEIIYDFC 182 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc--c-cccceeeEEecchhhcchhhhccCccceeeEE
Confidence 57888877554333333333367889999999999999998763 2 234566665543221 111 1 3359999
Q ss_pred EECCCC
Q psy4592 135 ITDSSD 140 (197)
Q Consensus 135 ~~~~~~ 140 (197)
.+|||+
T Consensus 183 McNPPF 188 (419)
T KOG2912|consen 183 MCNPPF 188 (419)
T ss_pred ecCCch
Confidence 999985
No 335
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.074 Score=41.76 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=76.6
Q ss_pred CeEEEEeCCchHhHHHHhcCC------------CCccEEEEEcCHHHHH-------------HHHhhcCCCCCC------
Q psy4592 59 KKVLIVGGGDGGVAREVLKHP------------SVESAYLVEIDNRVIE-------------VSKKYLPGMAVG------ 107 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~------------~~~~v~~ve~~~~~~~-------------~a~~~~~~~~~~------ 107 (197)
-.|+++|.|+|.....+.+.. ....++.+|.+|.... .+.+..+.+...
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 479999999998766655431 2346788887653221 111111111000
Q ss_pred --C-CCCCeEEEEcchHHHHhhcCC---ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 108 --L-SDPRLTVHVGDGFRFMSEHQQ---EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 108 --~-~~~~~~~~~~d~~~~~~~~~~---~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+ ....+.+..+|+.+.++.... ++|+.+.|.+.+...+ ..++++++..+++..+|||.+...+
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence 0 123577889999887776544 7999999999877655 7789999999999999999999753
No 336
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.93 E-value=0.052 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHH
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNR 92 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~ 92 (197)
++....|||||+|-+...|.+.+ -.-.|+|....
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R~R 91 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG--YPGWGIDARRR 91 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC--CCccccccccc
Confidence 45689999999998877666653 46668887543
No 337
>KOG0821|consensus
Probab=93.87 E-value=0.069 Score=41.09 Aligned_cols=59 Identities=31% Similarity=0.461 Sum_probs=44.4
Q ss_pred CCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 122 (197)
..-|.+||.|.|++++.+.... ..+...||+|+..+.-.+..... .+.+..++.+|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhc-----CCcceEEeccccce
Confidence 3579999999999999998774 47999999999888766543322 23467777787653
No 338
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.82 E-value=0.86 Score=36.64 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=60.2
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCcee
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D 132 (197)
.++.+||..|. |.|..+..+++..+ .+++++..+++-.+.+++ +.. ..-+.....|..+.+.. ....+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~-~Ga------~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKE-LGF------DAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH-cCC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence 45679999984 45556666777655 578888988888888876 321 11122222233332222 234699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+|+.... ...++.+.+.|+++|.++..
T Consensus 214 ~vld~~g-----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFDNVG-----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEECCC-----------HHHHHHHHHhhccCCEEEEE
Confidence 8884321 23568889999999998865
No 339
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.72 E-value=0.83 Score=37.30 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=57.0
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~ 133 (197)
..+.+||..|+|. |..+..+++..+...+++++.+++-.+.+++. .. ..-+.....+..+.... ....+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA------MQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------ceEecCcccCHHHHHHHhcCCCCCe
Confidence 4567999998753 22334455555533478899999888887653 21 00111111222222222 1246784
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.|.. + . ...+..+.+.|+++|.+++..
T Consensus 232 ~v~d~~---G-~-----~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETA---G-V-----PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECC---C-C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 444442 1 1 346788889999999998864
No 340
>KOG2920|consensus
Probab=93.68 E-value=0.06 Score=42.77 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh-hcCCC-CCC-C---CCCCeEEEEcchHHHHhhcCC
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK-YLPGM-AVG-L---SDPRLTVHVGDGFRFMSEHQQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~-~~~~~-~~~-~---~~~~~~~~~~d~~~~~~~~~~ 129 (197)
-..++|||+|||.|--...+..... ..+...|.+.+.++...- ++..+ ..+ . ...-..+...+..++.....+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 4678999999999977766655532 688888988888742221 11000 000 0 011122223311111111123
Q ss_pred --ceeEEEECCCCCCCCCcccccHHH-HHHHHhhcCCCcEEEEEc
Q psy4592 130 --EFDVIITDSSDPVGPAESLFQASY-FELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 --~~D~I~~~~~~~~~~~~~l~~~~~-~~~~~~~LkpgG~l~~~~ 171 (197)
.||+|.+.-+....... +.+ ...-...++++|.+++..
T Consensus 194 ~~~ydlIlsSetiy~~~~~----~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSL----AVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcchh----hhhHhhhhhhcCCccchhhhhh
Confidence 78888876543332221 222 445567889999887654
No 341
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.66 E-value=0.91 Score=37.18 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=64.1
Q ss_pred CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCce
Q psy4592 56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~ 131 (197)
+.+.+||..|.. -|.++..+++..+. ++.++--+++-.+.+++.-. ..-+.+...|..+.+.. . ...+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 446899999964 45677788887764 55555555655556666432 12344555555555543 2 2369
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
|+|+... ....+....+.|+++|.++....
T Consensus 213 Dvv~D~v-----------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTV-----------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECC-----------CHHHHHHHHHHhccCCEEEEEec
Confidence 9998443 25677888999999999998764
No 342
>KOG4058|consensus
Probab=93.62 E-value=0.11 Score=37.39 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=37.3
Q ss_pred hcccCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh
Q psy4592 50 LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY 100 (197)
Q Consensus 50 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~ 100 (197)
+.++...+..+.+|+|+|.|.+..+.++.+ ....+++|++|-.+.+++-.
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHH
Confidence 333333333689999999999988877764 35788999999888877653
No 343
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.51 E-value=1.4 Score=35.50 Aligned_cols=97 Identities=10% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~ 131 (197)
.++.+||..|. |.|..+..+++..+ .++++++-+++-.+.+++ +.. ..-+.... .+..+.+.. ..+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~-lGa------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKK-LGF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH-cCC------CEEEeccccccHHHHHHHhCCCCe
Confidence 45679999984 46666677777655 578888888888888865 221 11111111 122222222 23469
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+-... ...+..+.+.|+++|.++...
T Consensus 209 dvv~d~~G-----------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYFDNVG-----------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEEECCC-----------HHHHHHHHHHhCcCcEEEEec
Confidence 99984321 234578889999999998754
No 344
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.47 E-value=0.096 Score=41.18 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCeEEEEeCCchHhHHHHhcCC--------CCccEEEEEcCHHHHHHHHhhcCC
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP--------SVESAYLVEIDNRVIEVSKKYLPG 103 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~--------~~~~v~~ve~~~~~~~~a~~~~~~ 103 (197)
+-+|+|+|+|+|.++..++... ...+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4799999999999998877531 235899999999998888777654
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.47 E-value=1.1 Score=36.54 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D 132 (197)
+++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. .. ..-+.....+..+.+. . ....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCCc
Confidence 456799999865 233445566665544689999998888888763 21 1111111122222222 1 234699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+|+.... . ...+..+.+.|+++|.++..
T Consensus 238 ~vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG-----G-----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC-----C-----HHHHHHHHHHhhcCCEEEEe
Confidence 8885331 1 34678889999999998864
No 346
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.43 E-value=0.63 Score=36.00 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=48.4
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhhcCCCCCCCCCCCeEEE
Q psy4592 41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116 (197)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 116 (197)
..|.+-..+++....-++++||.+|+|.=+.-.. +++.. +.|+.| ++++++.++++. .+++++
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~-----------~~i~~~ 74 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKY-----------GNLKLI 74 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence 3343335556655556778999999998765533 33443 455555 778887665532 356666
Q ss_pred EcchHHHHhhcCCceeEEEECC
Q psy4592 117 VGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 117 ~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
..+..... -..+++|++..
T Consensus 75 ~r~~~~~d---l~g~~LViaAT 93 (223)
T PRK05562 75 KGNYDKEF---IKDKHLIVIAT 93 (223)
T ss_pred eCCCChHH---hCCCcEEEECC
Confidence 65543211 23467777654
No 347
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.27 E-value=2.5 Score=31.26 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.+++|..+|+|. ++..++ +..+ .+|.++|.++.....+... .+ ...+..+.+.. .|+
T Consensus 35 ~g~tvgIiG~G~--IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~~----aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGR--IGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLAQ----ADI 94 (178)
T ss_dssp TTSEEEEESTSH--HHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHHH-----SE
T ss_pred CCCEEEEEEEcC--CcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcch----hhh
Confidence 567999999875 444433 3444 6999999988765522221 12 23466666654 799
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|+...|.... ..++++.+ ..+.||+|.+|+ |+..
T Consensus 95 v~~~~plt~~-T~~li~~~----~l~~mk~ga~lv-N~aR 128 (178)
T PF02826_consen 95 VSLHLPLTPE-TRGLINAE----FLAKMKPGAVLV-NVAR 128 (178)
T ss_dssp EEE-SSSSTT-TTTSBSHH----HHHTSTTTEEEE-ESSS
T ss_pred hhhhhccccc-cceeeeee----eeeccccceEEE-eccc
Confidence 9998875332 22344444 445788777655 4433
No 348
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.26 E-value=2.2 Score=36.16 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=58.5
Q ss_pred CeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-----------
Q psy4592 59 KKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----------- 125 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------- 125 (197)
++|..||.|.-+...+ +++.+ .+++++|.+++.++..++.... +...+..+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~~-----------~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEIH-----------IVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCCC-----------cCCCCHHHHHHHHhhcCceeee
Confidence 4789999996655544 33342 6899999999988864432110 11111111111
Q ss_pred hcCCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 126 EHQQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
...+..|+|+...+.+...+ ..+ .-....+.+.+.|++|..++..+..
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 00125799998877653221 111 1144567788889988877776543
No 349
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.14 E-value=1.7 Score=35.34 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~~~~~ 131 (197)
..+.+||..|+ |.|..+..+++..+ .+++++..+++-.+.+++.+.. + .-+.... .+..+.+.. ....+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa-----~-~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGF-----D-DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC-----c-eeEEcCCcccHHHHHHHhCCCCc
Confidence 45689999996 45566666777655 5788888888888888764331 1 1122111 133332222 23569
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+.... ...+..+.+.|+++|.++...
T Consensus 223 d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYFDNVG-----------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEEECCC-----------HHHHHHHHHHhccCcEEEEec
Confidence 99984321 235678889999999998753
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.09 E-value=1.3 Score=35.90 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+| .|..+..+++..+...+++++.++...+.+++.- . ..-+.....+..+.+.. ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 345788887664 3455566666654347888888887777776531 1 11112222223232322 235699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+++.... . ...++.+.+.|+++|.++..
T Consensus 239 ~vld~~g----~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVG----F------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccC----C------HHHHHHHHHHhhcCCEEEEE
Confidence 9885321 0 24678888999999998864
No 351
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.01 E-value=3.2 Score=35.14 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=59.1
Q ss_pred CCCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..+++|+.+|+|.=+.... .++..+ .+|+++|.+|.....++.. . ..+ .+..+.+ ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~---------G--~~v--~~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD---------G--FRV--MTMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc---------C--CEe--CCHHHHH----hcCCEE
Confidence 3567999999997544443 334444 6899999999654433321 1 122 1333333 347998
Q ss_pred EECCCCCCCCCcccccHHHHH-HHHhhcCCCcEEEEEcCCCC-cChhHHHHHH
Q psy4592 135 ITDSSDPVGPAESLFQASYFE-LMSRALRPGGIVCSQAGTLW-YSLDCVGNTL 185 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~-~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~ 185 (197)
+.... . ...+. .....+|+|++++...-... .+.+.+.+..
T Consensus 255 ItaTG-----~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 255 ITATG-----N-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred EECCC-----C-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 86431 1 33444 47789999998887653332 4445554433
No 352
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.01 E-value=2.3 Score=36.76 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred CeEEEEeCCchHhHHHHh--cCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCC-------CCCeEEEEcchHHHHhhcC
Q psy4592 59 KKVLIVGGGDGGVAREVL--KHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLS-------DPRLTVHVGDGFRFMSEHQ 128 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~--~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~-------~~~~~~~~~d~~~~~~~~~ 128 (197)
.+|..+|+|-.++..++. +.+...+|+++|++++.++..++...... .++. ..++. ...|..+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i---- 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV---- 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----
Confidence 368899999877666643 33334689999999999988776432211 0100 00121 223322222
Q ss_pred CceeEEEECCCCCCCC-------Cccc-ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 129 QEFDVIITDSSDPVGP-------AESL-FQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~-------~~~l-~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
...|+|+...+.+... .+.+ +-.+..+++.+.|+++-.+++.+.-|
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp 130 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 3468888876544421 1111 11567777888898877777665443
No 353
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.96 E-value=0.91 Score=36.81 Aligned_cols=97 Identities=19% Similarity=0.363 Sum_probs=57.8
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
++.+||..|+|. |..+..+++..+...+++++.+++..+.+++. .. + .-+.....+.... ......+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~-----~-~vi~~~~~~~~~~-~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA-----D-ETVNLARDPLAAY-AADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----C-EEEcCCchhhhhh-hccCCCccEEE
Confidence 567899988764 45555666665533788999888888876653 21 0 0011111111121 11224589998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.... . ...++.+.+.|+++|.++...
T Consensus 237 d~~g-----~-----~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASG-----A-----PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCC-----C-----HHHHHHHHHHHhcCCEEEEEe
Confidence 5432 0 345688899999999998653
No 354
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.93 E-value=1.1 Score=32.96 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=57.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+..+|+-|||=+-.....- ...+..++...|+|........+.+.. ++... ..+....-.++||+|++
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~f----yD~~~-------p~~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVF----YDYNE-------PEELPEELKGKFDVVVI 92 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEE----CCCCC-------hhhhhhhcCCCceEEEE
Confidence 4479999999886554333 133447899999999875533221111 01100 01111112468999999
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|||. ... .. ..+..+.++.++|+++.+++.+
T Consensus 93 DPPF--l~~-ec-~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 93 DPPF--LSE-EC-LTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCC--CCH-HH-HHHHHHHHHHHhCccceEEEec
Confidence 9986 111 11 1334467777889988888754
No 355
>PLN02740 Alcohol dehydrogenase-like
Probab=92.77 E-value=1.5 Score=36.42 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=58.6
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~ 131 (197)
..+.+||.+|+|. |..+..+++..+..++++++.+++-++.+++. .. ..-+.... .+..+.+.. ..+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 4567999998753 23334455665534699999999999988763 21 11111111 122222222 22369
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+|+-..- . ...++.+.+.++++ |.+++..
T Consensus 270 dvvid~~G-----~-----~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFECAG-----N-----VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEECCC-----C-----hHHHHHHHHhhhcCCCEEEEEc
Confidence 98885431 1 34667788889997 9887754
No 356
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.75 E-value=2.9 Score=34.15 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=56.7
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh-cCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEE
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKY-LPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I 134 (197)
..+|..+|+|+ |.....++...+...+..+|++++..+ +... +... .........+.. .|.. .+ ...|+|
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADiV 77 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDVV 77 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCEE
Confidence 45899999988 655544444333357999999886543 2111 1110 001122344443 5533 22 336999
Q ss_pred EECCCCCCCCC---ccc------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPA---ESL------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~---~~l------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+...-.+..+. ..+ .-.++.+.+.+. .|++.+++.++.
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP 124 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 98663222111 000 013455566665 689977776543
No 357
>PLN02827 Alcohol dehydrogenase-like
Probab=92.59 E-value=1.4 Score=36.72 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~ 131 (197)
..+.+||..|+|. |.++..+++..+...+++++.+++-.+.+++. .. + .-+.... .+..+.+.. ..+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga-----~-~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV-----T-DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC-----c-EEEcccccchHHHHHHHHHhCCCC
Confidence 4567999998743 22334455555544688899888888888653 21 0 0111111 122232322 22368
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+|+-..- . ...+..+.+.|+++ |.+++..
T Consensus 265 d~vid~~G-----~-----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVG-----D-----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCC-----C-----hHHHHHHHHhhccCCCEEEEEC
Confidence 98884331 1 33567788899998 9998754
No 358
>KOG2539|consensus
Probab=92.59 E-value=0.75 Score=39.24 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=70.5
Q ss_pred CCCCeEEEEeCCchHhH--HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc---hHHHHhhc-CC
Q psy4592 56 PNPKKVLIVGGGDGGVA--REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD---GFRFMSEH-QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~-~~ 129 (197)
..+..+.|+|.|.|.-. ...........++.||-+..|.....+.... .......+.-. -+..++.. ..
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-----~~~~g~~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-----GSHIGEPIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-----hhhcCchhccccchhcccCCCCccc
Confidence 35678888888866433 3333233346899999999999888776542 00111111111 01122222 34
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHH
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 186 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 186 (197)
.||+|++....+.......-....-..+++..++|+.+++....-....+.+.+..+
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~ 330 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQ 330 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHH
Confidence 599999987655543332212334456778899999888765333333344444443
No 359
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.82 Score=36.60 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=58.6
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC------CCCCC--------CCCeEEEEcchHHHH
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM------AVGLS--------DPRLTVHVGDGFRFM 124 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~--------~~~~~~~~~d~~~~~ 124 (197)
++|..||+|.-+.+.+.........|+.+|.+++.++.+++..... ..... ..++++ ..|..+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 4789999986554433222212368999999998887776542100 00000 013332 24433322
Q ss_pred hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 125 SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 125 ~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...|+|+...+... -...++++++...++++..++.++
T Consensus 83 ----~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 83 ----KDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ----cCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECc
Confidence 35799998775211 112567888888888887665544
No 360
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=0.28 Score=40.45 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=39.5
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcCC--------CCccEEEEEcCHHHHHHHHhhcCC
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKHP--------SVESAYLVEIDNRVIEVSKKYLPG 103 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~--------~~~~v~~ve~~~~~~~~a~~~~~~ 103 (197)
...+.+-.+++||.|.|.++.-+++.. ...++..||+||+..+.=++.++.
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 334566789999999999988777532 357999999999998777666654
No 361
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.19 E-value=2.9 Score=34.25 Aligned_cols=98 Identities=19% Similarity=0.295 Sum_probs=57.4
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc---chHHHHhhc--CC
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG---DGFRFMSEH--QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~--~~ 129 (197)
..+.+||.+|+|. |..+..+++..+ .++++++.+++-++.+++. .. ..-+..... |..+.+... ..
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence 4567999999854 445555666655 5789999999988888663 21 111111111 222222221 12
Q ss_pred cee----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 130 EFD----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 ~~D----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+| +|+ +.. + . ...++.+.+.|++||.+++..
T Consensus 237 g~d~~~d~v~-d~~---g-~-----~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIF-ECS---G-S-----KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEE-ECC---C-C-----hHHHHHHHHHHhcCCeEEEEC
Confidence 354 454 331 1 1 346677888999999998865
No 362
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.13 E-value=4.7 Score=32.51 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=54.1
Q ss_pred CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEEEE
Q psy4592 59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I~~ 136 (197)
.+|..+|+|. |......+...+..++..+|++++..+-....+.... ........+.. .|..+ + ...|+|+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~~~-~----~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDYED-I----AGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCHHH-H----CCCCEEEE
Confidence 4789999987 5544443333221289999998876532111111100 00111234432 45322 2 34799998
Q ss_pred CCCCCCCCCcc---c------ccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 137 DSSDPVGPAES---L------FQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 137 ~~~~~~~~~~~---l------~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
....+..+... + .-.++++.+.+.. |++.+++.++.
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 65433322110 0 0134555555554 77877776544
No 363
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.10 E-value=1.5 Score=35.39 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=50.9
Q ss_pred CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+|..||+|.-+ ++..+.+......++++|.+++..+.+++. .. ... ...+..+.+ ...|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 589999998633 333344332224799999999877766542 10 111 112322222 35799998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
..+... ...+++.+...++++..++
T Consensus 73 avp~~~-------~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA-------SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH-------HHHHHHHHHhhCCCCCEEE
Confidence 775311 1445666666777776554
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.93 E-value=0.46 Score=38.03 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-----CC-CC-------CCCeEEEEcchHHH
Q psy4592 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-----VG-LS-------DPRLTVHVGDGFRF 123 (197)
Q Consensus 59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----~~-~~-------~~~~~~~~~d~~~~ 123 (197)
++|..||+|.=+ ++..+++.+ .+|+.+|.+++.++.+.+...... .+ .. ..++++ ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 478899998533 333344442 689999999999887765321100 00 00 012222 2333222
Q ss_pred HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
+ ...|+|+...+.. .-....++.++.+.++|+..++.++.
T Consensus 79 ~----~~aD~Vi~avpe~-----~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEK-----LELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCC-----HHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 2 4579999877531 11125677888889999887766653
No 365
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.85 E-value=2.2 Score=34.57 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+|. |..+..+++..+ .+++++.-+++..+.+++.- . ..-+.....+..+.+.. ....+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567999998753 556666666654 67888888888887775531 1 11122222232222222 234589
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++.... ....+..+.+.|+++|.++...
T Consensus 230 ~vld~~g----------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 230 VVIDATG----------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEEECCC----------CHHHHHHHHHHHhcCCEEEEEc
Confidence 9986531 0346688899999999988643
No 366
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=91.67 E-value=0.49 Score=32.03 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=39.2
Q ss_pred ceeEEEECCCCCCCC-----------CcccccHHHHHHHHhhcCCCcEEEEEcCCCCc-ChhHHHHHHHHHH
Q psy4592 130 EFDVIITDSSDPVGP-----------AESLFQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQHCA 189 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~-----------~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~ 189 (197)
+||+|+-|||..... ...++ .-|++...++| +|.+.+-+.+.|. ..+..+.+.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY-~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~ 70 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLY-ILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLL 70 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHH-HHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHh
Confidence 599999999853321 11122 34888888888 9999887777787 6666666666554
No 367
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.61 E-value=5.6 Score=31.35 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred EEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc---CCceeEEEECC
Q psy4592 62 LIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH---QQEFDVIITDS 138 (197)
Q Consensus 62 LdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~I~~~~ 138 (197)
|..-+|+=-++..+.+.. .++..+|+-|+=....+++|. .+.++.+..+|....+... .++=-+|+.||
T Consensus 93 l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 788899887877776553 689999999999999999987 3578999999987766542 34456899999
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
|+....+.+.. .+.+++..+.. ++|...++ -|.......+.+++.+++.
T Consensus 165 PfE~~~eY~rv-v~~l~~~~kRf-~~g~yaiW--YPik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 165 PFELKDEYQRV-VEALAEAYKRF-ATGTYAIW--YPIKDRRQIRRFLRALEAL 213 (279)
T ss_pred CcccccHHHHH-HHHHHHHHHhh-cCceEEEE--EeecchHHHHHHHHHHhhc
Confidence 87554433211 34455555554 45555554 2555667777777777655
No 368
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.58 E-value=5.6 Score=32.43 Aligned_cols=110 Identities=18% Similarity=0.297 Sum_probs=57.2
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
+.+.+|..||+|. |.....++...+. .++..+|++++.++--..-+... ..+. .++.+..+|..+ + ...|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~-~~~~-~~~~i~~~~~~~-~----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHA-VPFT-SPTKIYAGDYSD-C----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhh-cccc-CCeEEEeCCHHH-h----CCCCE
Confidence 4557999999976 5444443333333 37999999877553222222111 0011 245666566433 2 34799
Q ss_pred EEECCCCCCCCC---cccc--cHHHHHHHHhhc---CCCcEEEEEcC
Q psy4592 134 IITDSSDPVGPA---ESLF--QASYFELMSRAL---RPGGIVCSQAG 172 (197)
Q Consensus 134 I~~~~~~~~~~~---~~l~--~~~~~~~~~~~L---kpgG~l~~~~~ 172 (197)
|+...-.+..+. ..++ +...++++...+ .|+|.+++.++
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 998654333221 1111 122344433222 48998877654
No 369
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.54 E-value=2 Score=34.64 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=57.2
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.++.+||.+|+|. |..+..+++..+...+++++.+++..+.+++. .. . .-+.....+.........+.+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GA-----T-ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC-----e-EEecCCCCCHHHHHHhcCCCCcEE
Confidence 3557999998652 44555566665533388888888888877553 11 0 001111111111111124569999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~~----------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 231 IEATG----------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EECCC----------ChHHHHHHHHHHhcCCEEEEEe
Confidence 85431 1346788889999999988653
No 370
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.54 E-value=0.79 Score=38.42 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCeEEEEcchHHHHhh-cCCceeEEEE-CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 111 PRLTVHVGDGFRFMSE-HQQEFDVIIT-DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 111 ~~~~~~~~d~~~~~~~-~~~~~D~I~~-~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++++++++++.+.+.. +++++|..+. |.+. |..+..+ .+.++++.+.++|||+++..+..
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm~~~~~--~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WMDPEQL--NEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hCCHHHH--HHHHHHHHHHhCCCCEEEEeeCC
Confidence 6899999999999875 3789997665 5443 3333222 67889999999999999998743
No 371
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.23 E-value=2.5 Score=35.84 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|+.+|+|.=+.... .++..+ .+++++|.+|.-.+.|+.. . .+.. +..+.+ ..+|+|+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v----~~aDVVI 262 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-G----------YEVM--TMEEAV----KEGDIFV 262 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH----cCCCEEE
Confidence 568999999997444333 444444 5899999999887777652 1 1111 222322 3479998
Q ss_pred ECCCCCCCCCcccccHHHHHH-HHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFEL-MSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~-~~~~LkpgG~l~~~~ 171 (197)
.... . ...+.. ..+.+|+||+++...
T Consensus 263 ~atG-----~-----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 263 TTTG-----N-----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ECCC-----C-----HHHHHHHHHhcCCCCcEEEEeC
Confidence 6431 1 334554 488999999988765
No 372
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.21 E-value=0.45 Score=36.07 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred eeEEEECCCCCCCCC---cc------------cccHHHHHHHHhhcCCCcEEEEEcCCCCc
Q psy4592 131 FDVIITDSSDPVGPA---ES------------LFQASYFELMSRALRPGGIVCSQAGTLWY 176 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~---~~------------l~~~~~~~~~~~~LkpgG~l~~~~~~~~~ 176 (197)
.|+|+.|||...... .. -+..+++.++.++|||+|.++++......
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~ 61 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREI 61 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhh
Confidence 489999998655433 00 01245788999999999999998765444
No 373
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.18 E-value=3 Score=33.92 Aligned_cols=99 Identities=24% Similarity=0.297 Sum_probs=57.6
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcc----hHHHHhh-cCC
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD----GFRFMSE-HQQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~-~~~ 129 (197)
.++.+||..|+|. |..+..+++..+...++++.-+++..+.+++. .. ..-+.....+ ....... ...
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence 4567898887654 44555666665533388888888777777553 21 1111111112 1122222 234
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+|+|+.... . ...++.+.+.|+++|.++...
T Consensus 234 ~~d~vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTG-----A-----ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 5999985432 0 236688899999999988653
No 374
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.16 E-value=3 Score=33.04 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=67.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc--CCcee-
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH--QQEFD- 132 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D- 132 (197)
....|+.+|||.=.-...+. .+ ..+..+|+| |++++.-++.++..+ .....+.+++..|+.+.+... ...||
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~--~~-~~~~~~EvD~P~v~~~K~~~l~~~~-~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~ 156 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLP--WP-DGTRVFEVDQPAVLAFKEKVLAELG-AEPPAHRRAVPVDLRQDWPAALAAAGFDP 156 (260)
T ss_pred CCcEEEEeCCccccHHHhcC--CC-CCCeEEECCChHHHHHHHHHHHHcC-CCCCCceEEeccCchhhHHHHHHhCCCCC
Confidence 34689999999865544442 22 245667776 677776666665321 112357888888986433221 12233
Q ss_pred ----EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 133 ----VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 133 ----~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
++++.....+.+... ...+++.+.+...||+.+++....+
T Consensus 157 ~~ptl~i~EGvl~YL~~~~--v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 157 TAPTAWLWEGLLMYLTEEA--VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCeeeeecchhhcCCHHH--HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 455555444443322 1568888888888999999976444
No 375
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=91.01 E-value=1.1 Score=38.34 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEE------EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCc
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAY------LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE 130 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~------~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 130 (197)
.+++|+.||||+=+.+.++-.+.....++ +||.+....+.|++. ..+ ..+..+.+ +.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d-----------GF~--v~~~~Ea~----~~ 97 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-----------GFK--VGTYEELI----PQ 97 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc-----------CCc--cCCHHHHH----Hh
Confidence 45799999999865554443333334555 555555555555442 111 23444544 45
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
.|+|++-.|... ...+.+++...||||..|.+.
T Consensus 98 ADvVviLlPDt~-------q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 98 ADLVINLTPDKQ-------HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred CCEEEEcCChHH-------HHHHHHHHHhhCCCCCEEEec
Confidence 899998886431 255679999999999999985
No 376
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.97 E-value=4 Score=33.67 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=56.9
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHh-hcCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMS-EHQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~-~~~~~~ 131 (197)
..+.+||.+|+|. |..+..+++..+..++++++.+++-.+.+++. .. ..-+.... .+..+.+. .....+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 4567999998742 22334455665544799999999888888653 21 00111111 11122222 123468
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+|+-..- . ...+..+.+.|+++ |.++...
T Consensus 256 d~vid~~g-----~-----~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTG-----N-----ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCC-----C-----hHHHHHHHHhcccCCCEEEEEc
Confidence 99884331 1 23567788889885 8888754
No 377
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.91 E-value=3.5 Score=34.13 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~ 131 (197)
+.+.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. .. ..-+.... .+..+.+.. ..+.+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCC
Confidence 4567999998753 33445566665534799999999988888663 21 11111111 112222221 22368
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+|+-..- . ...+.++.+.++++ |.+++..
T Consensus 257 d~vid~~G-----~-----~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFECIG-----N-----VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEECCC-----C-----HHHHHHHHHHhhcCCCeEEEEe
Confidence 98885431 1 34567778899886 9887654
No 378
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.66 E-value=2 Score=36.09 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=46.6
Q ss_pred CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--hcCCceeEEE
Q psy4592 59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFDVII 135 (197)
Q Consensus 59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~D~I~ 135 (197)
++||.||||. |......+...+..+|+..|-+++..+.+.... ..+++..+.|+.+.-. .--..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEEE
Confidence 5899999964 222222222333379999999988877776643 2367777777765311 1234569999
Q ss_pred ECCCC
Q psy4592 136 TDSSD 140 (197)
Q Consensus 136 ~~~~~ 140 (197)
...+.
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 87753
No 379
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.63 E-value=3.3 Score=33.83 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-c-CCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-H-QQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~D 132 (197)
.++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. .. ..-+.....+..+.+.. . ...+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 456789999864 223334455555533788888888888877653 21 11112222233332322 2 23599
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+-... . ...++.+.+.|+++|.++...
T Consensus 244 ~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAG-----V-----QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCC-----C-----HHHHHHHHHhccCCCEEEEEc
Confidence 9985431 0 346678889999999988754
No 380
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.63 E-value=0.45 Score=35.86 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHH
Q psy4592 55 HPNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIE 95 (197)
Q Consensus 55 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~ 95 (197)
.+.+++||.+|.. +|.....++.. .++++.+|+.|.+-.
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~ 81 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRG 81 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHh
Confidence 3677899999997 56666666654 379999999997743
No 381
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.61 E-value=1.2 Score=35.65 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=52.5
Q ss_pred CeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 59 KKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 59 ~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
.+|+.+|.| .|.++..+.+.+....+++.|.+....+.+... . +.....+ +.........|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-g----------v~d~~~~--~~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-G----------VIDELTV--AGLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-C----------ccccccc--chhhhhcccCCEEEE
Confidence 578899987 345556666666556788888887776666432 1 1111111 000111345899998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
..|... +.++++++...|++|..+.
T Consensus 71 avPi~~-------~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 71 AVPIEA-------TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred eccHHH-------HHHHHHHhcccCCCCCEEE
Confidence 775322 2567777777777776655
No 382
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.59 E-value=3.3 Score=27.93 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=56.4
Q ss_pred EEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeEEE
Q psy4592 61 VLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDVII 135 (197)
Q Consensus 61 vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~I~ 135 (197)
|+.+|+| .++..+++. .....++.+|.+++.++.++.. .+.++.+|+.+. +.. .-.++|.|+
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 3455655 455554432 1225899999999998888663 256888888753 222 245789888
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+... +.. .--.+....+-+.|...++....+
T Consensus 68 ~~~~-----~d~--~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTD-----DDE--ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESS-----SHH--HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EccC-----CHH--HHHHHHHHHHHHCCCCeEEEEECC
Confidence 7663 111 012334455777888888886644
No 383
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.59 E-value=4.5 Score=33.40 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc--chHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG--DGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~-~~~~~ 131 (197)
+.+.+||.+|+|. |.++..+++..+...+++++.+++-.+.+++. .. ..-+..... +..+.+.. ..+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 4567999998642 23334455665533799999999988888652 21 111111111 22222222 23368
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+|+-..- . ...+..+.+.|+++ |.++...
T Consensus 258 d~vid~~g-----~-----~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTFECIG-----N-----VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEEECCC-----C-----hHHHHHHHHhhccCCCeEEEEc
Confidence 99985331 1 34667788899887 9888754
No 384
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.55 E-value=3.1 Score=33.88 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..+.+||..|+|. |..+..+++..+ .++++++.+++-.+.+++.-. + . ++ |..+ ...+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga------~--~--vi--~~~~---~~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGA------A--S--AG--GAYD---TPPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCC------c--e--ec--cccc---cCcccceEE
Confidence 4567999999753 334455666555 578899999988888877421 1 0 11 1000 112357876
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+..-. . ...++...+.|+++|++++..
T Consensus 228 i~~~~-----~-----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAP-----A-----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCC-----c-----HHHHHHHHHhhCCCcEEEEEe
Confidence 54221 1 236788889999999998765
No 385
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.39 E-value=4.9 Score=33.16 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~ 133 (197)
..+.+||..|+|. |..+..+++..+...+++++.++.-.+.+++. .. ..-+.....+..+.+. .....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~------~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA------THVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------cEEecCCCcCHHHHHHHHhCCCCcE
Confidence 3457899997643 44445566665544699999999888877653 11 0001111112222222 12356899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-... . ...+..+.+.|+++|.++...
T Consensus 258 vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTG-----V-----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCC-----C-----cHHHHHHHHHhccCCEEEEeC
Confidence 985431 1 235678889999999988754
No 386
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.22 E-value=7.5 Score=31.46 Aligned_cols=107 Identities=18% Similarity=0.286 Sum_probs=53.4
Q ss_pred eEEEEeCCc-hHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 60 KVLIVGGGD-GGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 60 ~vLdiG~G~-G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+|..||+|. |..... ++...-..+++.+|.+++..+.....+.... .....+..+..++..+ + ...|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIit 75 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVIT 75 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEEc
Confidence 688999975 322222 2333222489999998876543332221100 0012234555555432 2 458999986
Q ss_pred CCCCCCCC---ccccc------HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 138 SSDPVGPA---ESLFQ------ASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 138 ~~~~~~~~---~~l~~------~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
...+..+. ..++. .++.+.+.+ -.|+|++++.++.
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP 119 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNP 119 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCh
Confidence 65433221 11111 223334444 4788887776543
No 387
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.21 E-value=0.87 Score=37.53 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=22.2
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN 91 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~ 91 (197)
..+||.+|||. |+.....+...+..+++.+|-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45899999984 43333333333556899999764
No 388
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=90.01 E-value=4.3 Score=32.87 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~ 133 (197)
.++.+||..|+|. |..+..+++..+...++++.-+++..+.+++. .. ..-+........+..... ...+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 4556899998654 45555666665532388888888777776542 11 001111111122222222 245999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.... . ...+..+.+.|+++|.++...
T Consensus 231 vld~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEAAG-----S-----PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 985431 1 346678889999999988653
No 389
>KOG2651|consensus
Probab=90.00 E-value=0.57 Score=38.99 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=33.6
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHh
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~ 99 (197)
+.|.|+|.|-|.++..+.-.++ ..|.+||-|....+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence 6899999999999999887765 799999998777666543
No 390
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.99 E-value=7 Score=32.89 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCCCeEEEEeC-C-chHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE----cchHHHHhh-
Q psy4592 56 PNPKKVLIVGG-G-DGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV----GDGFRFMSE- 126 (197)
Q Consensus 56 ~~~~~vLdiG~-G-~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~- 126 (197)
..+.+||.+|+ | .|.++..+++.. +..+++++|.+++-++.+++.+..... .......++. .+..+.+..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHH
Confidence 34578999983 3 555666666653 224799999999999998885321000 0011111121 233332322
Q ss_pred -cCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 127 -HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 127 -~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
....+|+|+.... . ...+..+.+.++++|.+++..
T Consensus 253 t~g~g~D~vid~~g-----~-----~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 253 TGGQGFDDVFVFVP-----V-----PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred hCCCCCCEEEEcCC-----C-----HHHHHHHHHHhccCCeEEEEE
Confidence 1346998886431 1 346678889999998766543
No 391
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.95 E-value=2.1 Score=34.33 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=58.6
Q ss_pred CeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCC------CCCCCC-------CCeEEEEcchHHH
Q psy4592 59 KKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGM------AVGLSD-------PRLTVHVGDGFRF 123 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~~-------~~~~~~~~d~~~~ 123 (197)
++|..||+|.-+.+.+ ++.. ...|+.+|.+++.++.+.+.+... ...... .++++. .|.. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H
Confidence 5799999986554433 3333 368999999998887654321100 000000 123322 3332 1
Q ss_pred HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+ ...|+|+...+... -....+++++...++|+..++.++.+
T Consensus 81 ~----~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 L----ADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred h----cCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 35799998764211 11256788899999999877755433
No 392
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.83 E-value=2.4 Score=35.64 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=14.7
Q ss_pred CCCeEEEEeCCchHhHHHH
Q psy4592 57 NPKKVLIVGGGDGGVAREV 75 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l 75 (197)
++..|+|+|||+|..+..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 4568999999999766443
No 393
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.82 E-value=4.4 Score=36.32 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=57.6
Q ss_pred CCeEEEEeCCchH-hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeE
Q psy4592 58 PKKVLIVGGGDGG-VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDV 133 (197)
Q Consensus 58 ~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~ 133 (197)
..+|+.+|+|.=+ .....+...+ ..++.+|.|++.++.+++. ..+++.+|+.+. +.. .-+++|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 3589999998633 2222223322 6899999999999888662 245778887753 222 2457898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++....... ....-...+.+.|+-.++...
T Consensus 468 vvv~~~d~~~-------n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 468 LINAIDDPQT-------SLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred EEEEeCCHHH-------HHHHHHHHHHhCCCCeEEEEE
Confidence 8876532111 112233445557777776654
No 394
>PRK10083 putative oxidoreductase; Provisional
Probab=89.81 E-value=4.2 Score=32.90 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcC-CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.++.+||..|+|. |..+..+++. .+...+++++.+++-.+.+++.-. ..-+.....+..+.+......+|+
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-------DWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-------cEEecCccccHHHHHhcCCCCCCE
Confidence 4567999999642 1222334443 343468889998888888876421 001111122333333322223566
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+.... . ...+..+.+.|+++|.++...
T Consensus 232 vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 232 IIDAAC-----H-----PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEECCC-----C-----HHHHHHHHHHhhcCCEEEEEc
Confidence 664321 0 235678889999999998754
No 395
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.62 E-value=1.2 Score=33.81 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=22.1
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
..+||.+|||. |+.....+...+..+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 35999999984 4433333333355789999976
No 396
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=89.62 E-value=6.8 Score=31.79 Aligned_cols=99 Identities=26% Similarity=0.359 Sum_probs=56.0
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+|. |..+..+++..+..++++++.++.-.+.+++. .. ..-+.....+....+.. ....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GA------THTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CceeccccccHHHHHHHHhCCCCCC
Confidence 3456888876532 22333455555435788899888777777653 11 11122222232222221 234699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+... .. ...++.+.+.|+++|.++...
T Consensus 238 ~vld~~-----g~-----~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 238 VVIEAV-----GI-----PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEEECC-----CC-----HHHHHHHHHhccCCcEEEEec
Confidence 998433 11 335678889999999998653
No 397
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.48 E-value=5.9 Score=32.71 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHH-HHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVI-EVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
..+.+||..|+|. |.++..+++..+ .++++++.+++-. +.+++ +.. ..-+...+... +....+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~-~Ga--------~~vi~~~~~~~-~~~~~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINR-LGA--------DSFLVSTDPEK-MKAAIGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHh-CCC--------cEEEcCCCHHH-HHhhcCCCCE
Confidence 3567899988753 334445566554 5777888766543 33333 211 00010011111 2221235898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+-... . ...++++.+.|+++|.++...
T Consensus 251 vid~~g-----~-----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-----HHHHHHHHHHhcCCcEEEEeC
Confidence 884321 1 345678889999999998764
No 398
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=89.20 E-value=9.7 Score=31.37 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE--cchHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV--GDGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~ 131 (197)
..+.+||..|+|. |.++..+++..+..++++++.+++-.+.+++. .. ..-+.... .+..+.+.. ..+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 4567999998642 22334455655534799999999988888663 21 10111111 012222221 23368
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~~ 171 (197)
|+++-..- . ...+..+.+.++++ |.+++..
T Consensus 259 d~vid~~G-----~-----~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSFECTG-----N-----IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEEECCC-----C-----hHHHHHHHHHhhcCCCEEEEEC
Confidence 98874321 1 34667788899996 8888754
No 399
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.18 E-value=4.8 Score=28.74 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=45.2
Q ss_pred CeEEEEeCCchHhHHH----HhcCCCCccEEEEEcC--HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH---------
Q psy4592 59 KKVLIVGGGDGGVARE----VLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--------- 123 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~----l~~~~~~~~v~~ve~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 123 (197)
+.||..|+++| ++.+ +++. +...+..+.-+ .+..+...+.++. ...++.++..|+.+.
T Consensus 1 k~~lItGa~~g-iG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSG-IGRALARALARR-GARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSH-HHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCH-HHHHHHHHHHhc-CceEEEEeeecccccccccccccccc-----cccccccccccccccccccccccc
Confidence 36888888765 4444 4444 33577888877 3444433333322 235788888875532
Q ss_pred HhhcCCceeEEEECCCCCC
Q psy4592 124 MSEHQQEFDVIITDSSDPV 142 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~ 142 (197)
+....++.|.++.+.....
T Consensus 74 ~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccc
Confidence 1112468999999875433
No 400
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.00 E-value=5.9 Score=30.67 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--------- 125 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------- 125 (197)
..+++|..|+ +|.++..+++.. ...+++.++-+++-.+...+.+.. ...++.++.+|+.+.-.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-----LGIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3468888885 556666655421 125888999887766655544432 12456777777664211
Q ss_pred hcCCceeEEEECCC
Q psy4592 126 EHQQEFDVIITDSS 139 (197)
Q Consensus 126 ~~~~~~D~I~~~~~ 139 (197)
...++.|.|+.+..
T Consensus 85 ~~~~~id~vi~~ag 98 (259)
T PRK08213 85 ERFGHVDILVNNAG 98 (259)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899998864
No 401
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.86 E-value=1.3 Score=34.25 Aligned_cols=33 Identities=39% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
..+|+.+|||. |+.....+...+..+++.+|-+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35999999984 4433333333455788888643
No 402
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.84 E-value=6.8 Score=32.89 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhh-c-CCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSE-H-QQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~-~-~~~~ 131 (197)
..+.+||..|+|. |..+..+++..+...++++|.+++-++.+++. .. ..+.... .+..+.+.. . ...+
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga-------~~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC-------ETVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC-------eEEecCCcccHHHHHHHHcCCCCC
Confidence 4567888877753 23334455555544566778888888888773 21 1111111 122222222 2 2468
Q ss_pred eEEEECCCCCCCCC---cc-cccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 132 DVIITDSSDPVGPA---ES-LFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 132 D~I~~~~~~~~~~~---~~-l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
|+++-..-.+.... .. --....++++.+.++++|.+++...
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 98885432110000 00 0002468889999999999998653
No 403
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.74 E-value=7.7 Score=32.05 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~ 133 (197)
+.+.+|..+|||.=+++ ..-++..+..+|.+||++++-+++|++.=.- ..++..... |+.+.+... +.-.|.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT--~~vn~~~~~----~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT--HFVNPKEVD----DVVEAIVELTDGGADY 257 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc--eeecchhhh----hHHHHHHHhcCCCCCE
Confidence 45567777777643333 3333445567999999999999999886211 001111111 455544442 335666
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+-.. .+ .+.+++....++++|..++..
T Consensus 258 ~~e~~-----G~-----~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 258 AFECV-----GN-----VEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred EEEcc-----CC-----HHHHHHHHHHHhcCCeEEEEe
Confidence 65222 11 457888889999999888764
No 404
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=88.63 E-value=6.9 Score=31.35 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=58.3
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCcee
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D 132 (197)
..+.+||..|+ +.|..+..+++..+ .++++++.++.-.+.+++.+.. ..-+.....+..+.+. .....+|
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d 216 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGID 216 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCce
Confidence 34578999984 35556566666654 5888888888887877664321 1111111112222222 1235699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+++.... ...++.+.+.|+++|.++...
T Consensus 217 ~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 217 VYFDNVG-----------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEEcch-----------HHHHHHHHHhcCCCceEEEEe
Confidence 8884321 235677888999999987653
No 405
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.60 E-value=9.4 Score=30.21 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
..+.+||..|+ +.|..+..+++..+ .+++++..+++-.+.+++ +.. ..+-....+..+.+......+|+
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKE-LGA-------DEVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh-cCC-------cEEEecCccHHHHHHHhCCCceE
Confidence 45679999986 45666666777655 678888888887777754 221 11100112222222221457999
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.... ...+..+.+.|+++|.++...
T Consensus 212 vl~~~~-----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 212 VLELVG-----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEECCC-----------hHHHHHHHHHhccCCEEEEEc
Confidence 984331 235677889999999988643
No 406
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.54 E-value=5.5 Score=33.98 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|+.+|+|.=+.... .++..+ .+|+++|.++.....+... ..++ .+..+.+ ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-----------G~~v--~~l~eal----~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-----------GFRV--MTMEEAA----ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-----------CCEe--cCHHHHH----hCCCEEE
Confidence 567999999986443332 333444 5899999998664433321 1111 2333333 3589998
Q ss_pred ECCCCCCCCCcccccHHHHH-HHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFE-LMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~-~~~~~LkpgG~l~~~~ 171 (197)
... .. ...+. ...+.+|+|++++...
T Consensus 273 ~aT-----G~-----~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TAT-----GN-----KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECC-----CC-----HHHHHHHHHhcCCCCCEEEEcC
Confidence 643 11 23444 6778899999877644
No 407
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.51 E-value=8.9 Score=30.81 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..+.+||.+|+| .|..+..+++..+ .+++++..+++..+.+++. .. . .-+.....+. .....+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~---~~~~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GA-----D-EVVDSGAELD---EQAAAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CC-----c-EEeccCCcch---HHhccCCCCEE
Confidence 445689999886 5555555666654 5888999888888877542 11 0 0011111111 11112468988
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+.... ....+..+.+.|+++|.++...
T Consensus 230 i~~~~----------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV----------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC----------cHHHHHHHHHhcccCCEEEEEC
Confidence 85431 1345678889999999888754
No 408
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=88.43 E-value=1.8 Score=34.21 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=52.7
Q ss_pred hhHHHHHHhhcc--cCCCCCCeEEEEeCCchH---hHHHHh-cCCC-CccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCe
Q psy4592 41 FSYSEMIAFLPL--CSHPNPKKVLIVGGGDGG---VAREVL-KHPS-VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113 (197)
Q Consensus 41 ~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~---~~~~l~-~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~ 113 (197)
..|+|+...+.- +-.+...+||.+|.|+-- =+..++ ++.| .+.++-.|+.+-+ .+.+
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~- 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDAD- 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSS-
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccC-
Confidence 457787777643 224566899999998531 112233 3343 2444445554322 1122
Q ss_pred EEEEcchHHHHhhcCCceeEEEECCCCCCCC--------CcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGP--------AESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 114 ~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~--------~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
..+.+|-+.+. .+.++|+|++|...+... ...++ .-+..-++..|+-||-+.+-...
T Consensus 107 ~~~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~i~~kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 107 QSIVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGFIKEKLALGGSVAIKITE 171 (299)
T ss_dssp EEEES-GGGEE--ESS-EEEEEE----TTS-SS-S------THH-HHHHHHHHHHEEEEEEEEEEE-S
T ss_pred CceeccccccC--CCCcccEEEEecccccccccccccCCccccH-HHHHHHHHhhhhcCceEEEEeec
Confidence 34557755433 257999999999742210 11111 23444557889999998887633
No 409
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.43 E-value=2.2 Score=34.41 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=54.7
Q ss_pred CeEEEEeCCchHh--HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCC--------CCeEEEEcchHHHHhhcC
Q psy4592 59 KKVLIVGGGDGGV--AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--------PRLTVHVGDGFRFMSEHQ 128 (197)
Q Consensus 59 ~~vLdiG~G~G~~--~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~ 128 (197)
++|..||+|.-+. +..+++. + .+++.+|.+++.++.+++........... .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 5799999985443 3334433 2 68999999998887776531100000000 11222 23332222
Q ss_pred CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...|+|+...+... -....++.++...++++..++.++
T Consensus 78 ~~aDlVi~av~~~~-----~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 SGADLVIEAVPEKL-----ELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred ccCCEEEEeccCcH-----HHHHHHHHHHHHhCCCCcEEEECC
Confidence 35799998764211 012557777777777766555443
No 410
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.36 E-value=3.6 Score=32.94 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=51.4
Q ss_pred eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE---EEcchHHHHhhcCCceeEE
Q psy4592 60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV---HVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~D~I 134 (197)
+|+.+|+|.-+.... +.+. + ..|+.++. ++.++..++.--... .... ...+ ...|. ......+|+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~----~~~~~~~d~v 72 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIR-SDHG-DAVVPGPVITDP----EELTGPFDLV 72 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEE-eCCC-eEEecceeecCH----HHccCCCCEE
Confidence 688999987654433 3333 2 57888888 666665544210000 0000 1111 01121 1112578999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+.....+. .++.++.+...+.++..++..
T Consensus 73 ilavk~~~-------~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 73 ILAVKAYQ-------LDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred EEEecccC-------HHHHHHHHHhhcCCCCEEEEe
Confidence 88764321 266778888888887766543
No 411
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.34 E-value=2.7 Score=33.68 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=55.4
Q ss_pred CeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCC--------CCCC-C-------CCCeEEEEcch
Q psy4592 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM--------AVGL-S-------DPRLTVHVGDG 120 (197)
Q Consensus 59 ~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~-~-------~~~~~~~~~d~ 120 (197)
++|..||+|.=+ ++..++.. + .+|+.+|.+++.++.+++.+... ..+. . ..++.. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 479999998533 33334433 2 58999999999887665432210 0000 0 011222 1222
Q ss_pred HHHHhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 121 FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 121 ~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+. ....|+|+...+... -...++++++.+.++|+..++.+
T Consensus 81 -~~----~~~aDlVieav~e~~-----~~k~~~~~~l~~~~~~~~il~S~ 120 (291)
T PRK06035 81 -ES----LSDADFIVEAVPEKL-----DLKRKVFAELERNVSPETIIASN 120 (291)
T ss_pred -HH----hCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEEc
Confidence 11 134799997764211 11266888888888888876644
No 412
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.22 E-value=8.5 Score=31.68 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcC---CCCCCCC-CCCeEEEEcchHHHHhhcCC
Q psy4592 56 PNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLP---GMAVGLS-DPRLTVHVGDGFRFMSEHQQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~---~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 129 (197)
+...+|..||+|..+.+.. +.+.. .++....+++.++..++.-. .+..+.. ..++.. ..|..+.+ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~ 76 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N 76 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence 3446899999997765544 33332 56677788888777765321 1100100 112322 34433322 4
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
..|+|+...+.. ..++.++++...++++..++..
T Consensus 77 ~aDlVilavps~-------~~~~vl~~i~~~l~~~~~vIsl 110 (341)
T PRK12439 77 CADVVVMGVPSH-------GFRGVLTELAKELRPWVPVVSL 110 (341)
T ss_pred cCCEEEEEeCHH-------HHHHHHHHHHhhcCCCCEEEEE
Confidence 579998876521 1267888898889888755443
No 413
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.19 E-value=0.49 Score=38.32 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=62.6
Q ss_pred CeEEEEeCCchHhHHHHhcCC--------------------CCccEEEEEcCH--HHHHHHHhhcCCC-----------C
Q psy4592 59 KKVLIVGGGDGGVAREVLKHP--------------------SVESAYLVEIDN--RVIEVSKKYLPGM-----------A 105 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~--------------------~~~~v~~ve~~~--~~~~~a~~~~~~~-----------~ 105 (197)
.+||-||.|.|+-..+++... +...++.|||.+ .+++.....+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999987443333211 114899999975 5666655544321 0
Q ss_pred --CCCCCCCeEEEEcchHHHHhhc------CCceeEEEECCCCCCC-CCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 106 --VGLSDPRLTVHVGDGFRFMSEH------QQEFDVIITDSSDPVG-PAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 106 --~~~~~~~~~~~~~d~~~~~~~~------~~~~D~I~~~~~~~~~-~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
..-..-+++|.+.|+...-... .++.|+|....+.... ....--+..|+..+-..++||..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0001125677777765432211 1234555543331110 000111467999999999999988775
No 414
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.10 E-value=6.4 Score=30.75 Aligned_cols=93 Identities=25% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCcc-EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVES-AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.++.+||..|+|. |..+..+++..+ .+ +++++.+++..+.+++.-.. . .+ .... .... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~~------~-~~--~~~~-~~~~--~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGPA------D-PV--AADT-ADEI--GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCCC------c-cc--cccc-hhhh--cCCCCCE
Confidence 4567899998754 445555666555 45 99999988888877664200 0 11 0000 0111 2346898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+.... . ...+....+.|+++|.++...
T Consensus 163 vl~~~~-----~-----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASG-----S-----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccC-----C-----hHHHHHHHHHhcCCcEEEEEe
Confidence 885431 0 335677888999999887643
No 415
>KOG1209|consensus
Probab=87.75 E-value=5.8 Score=30.76 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcC-HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH------HH-h
Q psy4592 56 PNPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEID-NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR------FM-S 125 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~------~~-~ 125 (197)
.+++.||..||..|+++-++++. ..++.+++.--+ +.|.+++.+.-- . ..++-+.+-.+ .+ .
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl------~--~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGL------K--PYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCC------e--eEEeccCChHHHHHHHHHHhh
Confidence 45679999999999999888863 233677666543 446666644310 1 12221122111 11 2
Q ss_pred hcCCceeEEEECCCC
Q psy4592 126 EHQQEFDVIITDSSD 140 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~ 140 (197)
.+.++.|+.+.|.-.
T Consensus 77 ~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAGQ 91 (289)
T ss_pred CCCCceEEEEcCCCC
Confidence 246899999987643
No 416
>PLN02494 adenosylhomocysteinase
Probab=87.71 E-value=10 Score=32.76 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCCeEEEEeCCchHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|+.+|+|.=+...+ .++..+ .+|+++|.++.....+... ...+. +..+.+. ..|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-----------G~~vv--~leEal~----~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-----------GYQVL--TLEDVVS----EADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-----------CCeec--cHHHHHh----hCCEEE
Confidence 468999999996443332 233344 5899999998654444331 01111 3334332 479998
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC-CCCcChhHHH
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG-TLWYSLDCVG 182 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~-~~~~~~~~~~ 182 (197)
.... ...+ +.+...+.||+||+++...- ....+...+.
T Consensus 315 ~tTG-----t~~v----I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 315 TTTG-----NKDI----IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred ECCC-----Cccc----hHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 6331 1111 23667789999999987653 2334444443
No 417
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.59 E-value=5.7 Score=30.26 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCCCeEEEEeCCchHhHHH--HhcCCCCccEEEEEcC--HHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCce
Q psy4592 56 PNPKKVLIVGGGDGGVARE--VLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 131 (197)
-.+++||.+|.|.=+.... +++.+ +.|+.++.+ ++..++++. .+++++..+..... -..+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d---l~~~ 70 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI---LEGA 70 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH---hCCc
Confidence 3567999999997554432 33333 688888654 344333321 26777777654221 2468
Q ss_pred eEEEECCC
Q psy4592 132 DVIITDSS 139 (197)
Q Consensus 132 D~I~~~~~ 139 (197)
|+|+..+.
T Consensus 71 ~lVi~at~ 78 (205)
T TIGR01470 71 FLVIAATD 78 (205)
T ss_pred EEEEECCC
Confidence 99887653
No 418
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.53 E-value=12 Score=30.81 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+.+||..|+| .|..+..+++..+ .++++++.+++....+.+.+.. ...+...+... +......+|+++
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~~~~~~~~~~~~Ga--------~~~i~~~~~~~-~~~~~~~~D~vi 249 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSDKKREEALEHLGA--------DDYLVSSDAAE-MQEAADSLDYII 249 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhcCC--------cEEecCCChHH-HHHhcCCCcEEE
Confidence 45789988764 3334455666555 5677888777665555443321 11111112111 222223589888
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
-... . ...++.+.+.|+++|.++...
T Consensus 250 d~~g-----~-----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 250 DTVP-----V-----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ECCC-----c-----hHHHHHHHHHhccCCEEEEEC
Confidence 5431 1 235677888999999988764
No 419
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.45 E-value=8.1 Score=31.27 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=56.5
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..+.+||..|+|. |..+..+++..+ .++++++.+++-.+.+++. .. ..-+.....+..+.+... ..+|++
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~-~~~d~v 232 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL-GGAKLI 232 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc-CCCCEE
Confidence 4557999998542 233344555554 5788999988888888552 21 111111122322222222 358988
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+.... . ...+..+.+.|+++|.++...
T Consensus 233 i~~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LATAP-----N-----AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EECCC-----c-----hHHHHHHHHHcccCCEEEEEe
Confidence 84321 0 346677889999999988754
No 420
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=87.42 E-value=9.7 Score=30.87 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=56.0
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+| .|..+..+++..+...+++++-++.-.+.+++. .. ..-+.....+..+.+.. ....+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM-GA------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 355688886654 233444455555532388888788777766553 10 11122222333333322 234689
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+.... ....+..+.+.|+++|.++...
T Consensus 233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence 9986421 1346678889999999987754
No 421
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.39 E-value=1.1 Score=32.12 Aligned_cols=38 Identities=21% Similarity=0.070 Sum_probs=24.5
Q ss_pred EEeCCch--HhHHHHh--cCCCCccEEEEEcCHHHHHHHHhh
Q psy4592 63 IVGGGDG--GVAREVL--KHPSVESAYLVEIDNRVIEVSKKY 100 (197)
Q Consensus 63 diG~G~G--~~~~~l~--~~~~~~~v~~ve~~~~~~~~a~~~ 100 (197)
|||+..| .....+. ...+..+++++|.+|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 344557899999999998888777
No 422
>PRK10637 cysG siroheme synthase; Provisional
Probab=87.37 E-value=4.1 Score=35.02 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=43.0
Q ss_pred hhcccCCCCCCeEEEEeCCchHhHHH--HhcCCCCccEEEE--EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH
Q psy4592 49 FLPLCSHPNPKKVLIVGGGDGGVARE--VLKHPSVESAYLV--EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM 124 (197)
Q Consensus 49 ~~~~~~~~~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~v--e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 124 (197)
+++++..-.+++||.+|+|.=+.-.. +++.. ++|+.| +++++..+++.+ .+++++..+....
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~~- 68 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDES- 68 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCChH-
Confidence 35555556778999999998655433 33333 566665 666666544322 3566666554321
Q ss_pred hhcCCceeEEEECC
Q psy4592 125 SEHQQEFDVIITDS 138 (197)
Q Consensus 125 ~~~~~~~D~I~~~~ 138 (197)
.-+.+++|+...
T Consensus 69 --dl~~~~lv~~at 80 (457)
T PRK10637 69 --LLDTCWLAIAAT 80 (457)
T ss_pred --HhCCCEEEEECC
Confidence 123467877654
No 423
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.33 E-value=14 Score=29.98 Aligned_cols=108 Identities=14% Similarity=0.230 Sum_probs=53.5
Q ss_pred eEEEEeCCc-hHhHHH-HhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 60 KVLIVGGGD-GGVARE-VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 60 ~vLdiG~G~-G~~~~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+|-.||+|. |....+ ++...-..++..+|++++..+--..-+..-.......++++..+|..+ + ...|+|+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~-~----~~aDivvit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD-C----ADADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH-h----CCCCEEEEC
Confidence 366889976 544433 333322247999999865443211111110000011356777777433 2 347999986
Q ss_pred CCCCCCCC-----cccc--cHHH----HHHHHhhcCCCcEEEEEcCC
Q psy4592 138 SSDPVGPA-----ESLF--QASY----FELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 138 ~~~~~~~~-----~~l~--~~~~----~~~~~~~LkpgG~l~~~~~~ 173 (197)
.-.+..+. ..++ +.+. .+++.+. .|+|.+++.++.
T Consensus 76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNP 121 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNP 121 (307)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 54333221 1111 1223 3334444 488988876644
No 424
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.24 E-value=3.7 Score=36.62 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=58.9
Q ss_pred CeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeEE
Q psy4592 59 KKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDVI 134 (197)
Q Consensus 59 ~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~I 134 (197)
.+|+.+|+|.=+.. ...++..+ ..++.+|.||+.++.+++. ...++.||+.+. +.. .-++.|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 57888888753322 22222222 6899999999999888652 245778887653 222 24578988
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
++....... ....-...|.+.|+..++....+
T Consensus 469 v~~~~d~~~-------n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 469 VITCNEPED-------TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEeCCHHH-------HHHHHHHHHHHCCCCeEEEEeCC
Confidence 876632111 11233345667888888876544
No 425
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.19 E-value=1.6 Score=32.51 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=56.3
Q ss_pred eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCC-----CCC-CC-------CCCeEEEEcchHHHH
Q psy4592 60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGM-----AVG-LS-------DPRLTVHVGDGFRFM 124 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----~~~-~~-------~~~~~~~~~d~~~~~ 124 (197)
+|..+|+|+=+.+.+ ++.. +.+|+.+|.+++.++.+++.+... ..+ .. ..++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 477899986443333 3333 379999999999988777654320 000 00 113332 233222
Q ss_pred hhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 125 SEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 125 ~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
. ...|+|+=..+. ..-...++|+++.+.+.|+-.|..++.+
T Consensus 76 --~-~~adlViEai~E-----~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 76 --A-VDADLVIEAIPE-----DLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --G-CTESEEEE-S-S-----SHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --H-hhhheehhhccc-----cHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 1 268999866642 1112377999999999999999987643
No 426
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.16 E-value=2.3 Score=35.08 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=21.7
Q ss_pred CCeEEEEeCCc-hHhH-HHHhcCCCCccEEEEEcC
Q psy4592 58 PKKVLIVGGGD-GGVA-REVLKHPSVESAYLVEID 90 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~v~~ve~~ 90 (197)
..+||.+|||. |+.. ..|+.. +..+++.+|-|
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 45999999984 4333 333333 55799999976
No 427
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.05 E-value=15 Score=29.83 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=53.1
Q ss_pred CeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh-cCCCCCCCCCCCeEEE-EcchHHHHhhcCCceeEEE
Q psy4592 59 KKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKY-LPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 59 ~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~-~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D~I~ 135 (197)
.+|-.||+|. |....+.+...+...++.+|++++..+ ++.. +.... ........+. ..|..+ + ...|+|+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~~-~~~~~~~~i~~t~d~~~-~----~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEAS-PVGGFDTKVTGTNNYAD-T----ANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhhh-hccCCCcEEEecCCHHH-h----CCCCEEE
Confidence 3688999986 333333222222237999999776433 2211 11100 0011122333 356433 2 3479999
Q ss_pred ECCCCCCCCCcc---c--cc----HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAES---L--FQ----ASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~---l--~~----~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
.....+..+... + .+ .+..+++.+. .|++.+++.++.
T Consensus 75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP 120 (305)
T TIGR01763 75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNP 120 (305)
T ss_pred EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 876554432210 1 01 2344455555 488888876654
No 428
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=87.04 E-value=10 Score=31.36 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=52.4
Q ss_pred eEEEEeCCchHhHHHHhcCCCC--------ccEEEEEc-----CHHHHHHHHhhcCCCC--CCC-CCCCeEEEEcchHHH
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSV--------ESAYLVEI-----DNRVIEVSKKYLPGMA--VGL-SDPRLTVHVGDGFRF 123 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~--------~~v~~ve~-----~~~~~~~a~~~~~~~~--~~~-~~~~~~~~~~d~~~~ 123 (197)
+|..||+|.++.+.+..-.... .+|+.... +++..+...+...... .+. -++++++ ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 4678999988766553221111 35655555 6666666554322110 011 1234554 3565554
Q ss_pred HhhcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
+. ..|+|+...|.... ++.++++...|+++-.++
T Consensus 80 l~----~ADiIIlAVPs~~i-------~~vl~~l~~~l~~~~~iV 113 (342)
T TIGR03376 80 AK----GADILVFVIPHQFL-------EGICKQLKGHVKPNARAI 113 (342)
T ss_pred Hh----cCCEEEEECChHHH-------HHHHHHHHhhcCCCCEEE
Confidence 43 36888877652111 567788888887654443
No 429
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=86.97 E-value=9.3 Score=30.79 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~ 133 (197)
..+.+||..|+| .|..+..+++.....++++++-+++-.+.+++. .. + .-+.... .+..+.+....+.+|.
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~-----~-~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA-----D-LTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC-----c-EEecccccccHHHHHHHhcCCCcE
Confidence 456799999953 233444455542236899999999888888553 21 0 0111111 1212223222235785
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.+.. ..+.++.+.+.|+++|.++...
T Consensus 234 vi~~~~----------~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 234 AVVTAV----------AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEeCC----------CHHHHHHHHHhccCCCEEEEEe
Confidence 554431 1456788899999999988653
No 430
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.97 E-value=7.3 Score=26.25 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred eEEEEeCCchHhHH--HHhcCCCCccEE-EEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEE
Q psy4592 60 KVLIVGGGDGGVAR--EVLKHPSVESAY-LVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT 136 (197)
Q Consensus 60 ~vLdiG~G~G~~~~--~l~~~~~~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~ 136 (197)
+|..||+|..+-.. .+....+..+++ .+|.+++..+.+.+.+. +. ...|..+.+.. ...|+|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence 68899998764332 233443445554 67888887776655442 22 55777777765 46999998
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCCCCcChhHHHHHHHHHHhh
Q psy4592 137 DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 191 (197)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (197)
..+. .. =.+.+.+.|+-|--+++.- ......+..+++.+..++.
T Consensus 69 ~tp~----~~------h~~~~~~~l~~g~~v~~EK-P~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 69 ATPP----SS------HAEIAKKALEAGKHVLVEK-PLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp ESSG----GG------HHHHHHHHHHTTSEEEEES-SSSSSHHHHHHHHHHHHHH
T ss_pred ecCC----cc------hHHHHHHHHHcCCEEEEEc-CCcCCHHHHHHHHHHHHHh
Confidence 7652 11 2244555666666666643 2234567777777766654
No 431
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.95 E-value=10 Score=30.81 Aligned_cols=99 Identities=26% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~ 133 (197)
.++.+||..|+|. |..+..+++..+...+++++-+++-.+.+++. .. ..-+.....+....... ..+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence 3556888877643 34445566655533677777777666666552 11 00111111222211111 2347899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+.... .......+.+.|+++|.++...
T Consensus 235 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG----------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence 986542 1345677888999999988653
No 432
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=86.92 E-value=7.1 Score=32.10 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~D 132 (197)
.++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. .. ..-+.....+..+.+. . ....+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345688887654 334444555655533388888888877777542 21 0011111122222122 1 235699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+.... . ...+..+.+.|+++|.++...
T Consensus 259 ~vld~vg-----~-----~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALG-----K-----PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCC-----C-----HHHHHHHHHHHhcCCEEEEEc
Confidence 9985432 1 125677888999999988654
No 433
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.88 E-value=11 Score=30.66 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|..+|.|. |.....+++..+ .+|.++|..+.. .. ..+. ..+..+.++ ..|+|+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d~~~~~--------~~-------~~~~--~~~l~ell~----~sDvv~ 201 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYSTSGKN--------KN-------EEYE--RVSLEELLK----TSDIIS 201 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcC-CEEEEECCCccc--------cc-------cCce--eecHHHHhh----cCCEEE
Confidence 457899999875 433333444444 688888864210 00 1122 235555553 369999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
...|..... .+++.. +..+.||||.+|+=.
T Consensus 202 lh~Plt~~T-~~li~~----~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 202 IHAPLNEKT-KNLIAY----KELKLLKDGAILINV 231 (311)
T ss_pred EeCCCCchh-hcccCH----HHHHhCCCCeEEEEC
Confidence 988753332 234443 444577888777643
No 434
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.78 E-value=3.6 Score=32.78 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcC
Q psy4592 57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
...+|+.+||| .|+.....+.+.+..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34699999998 56666555545466789999966
No 435
>PLN02702 L-idonate 5-dehydrogenase
Probab=86.75 E-value=6.9 Score=32.14 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE--EEcchHHHHh----hcC
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV--HVGDGFRFMS----EHQ 128 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~d~~~~~~----~~~ 128 (197)
..+.+||.+|+| .|..+..+++..+...+++++.++...+.+++. .. ...+.+ ...+..+.+. ...
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GA------DEIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEecCcccccHHHHHHHHhhhcC
Confidence 345689999764 233445566655544688899888887877663 21 001111 1122222221 113
Q ss_pred CceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+.+|+|+.... . ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 253 GGIDVSFDCVG-----F-----NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCEEEECCC-----C-----HHHHHHHHHHHhcCCEEEEEc
Confidence 46898885431 1 235688889999999988654
No 436
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.74 E-value=0.89 Score=38.65 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=42.6
Q ss_pred eEEEEeCCchHhHHHH----hc--CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCcee
Q psy4592 60 KVLIVGGGDGGVAREV----LK--HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEFD 132 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l----~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~D 132 (197)
+|..||+|+.+.+..+ +. .....+++.+|++++.++............ .....++. ..|..+.+ ...|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal----~~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE-LGAPLKIEATTDRREAL----DGAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHh----cCCC
Confidence 5889999995444322 21 233358999999998777554432111000 11224443 45654444 3479
Q ss_pred EEEECCC
Q psy4592 133 VIITDSS 139 (197)
Q Consensus 133 ~I~~~~~ 139 (197)
+|+...+
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 9998775
No 437
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=86.73 E-value=12 Score=30.80 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=56.0
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc--chHHHHhh-cCCce
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG--DGFRFMSE-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~-~~~~~ 131 (197)
.++.+||..|+|. |..+..+++..+...+++++.+++-.+.+++. .. ..-+..... +..+.+.. ..+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCC
Confidence 4567999987642 22334455555544588888888888877553 21 011111112 22222221 23568
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcC-CCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALR-PGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~Lk-pgG~l~~~~ 171 (197)
|+|+.... . ...+..+.+.|+ ++|.++...
T Consensus 255 d~vid~~g-----~-----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAFEVIG-----S-----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEEECCC-----C-----HHHHHHHHHHhccCCCEEEEEe
Confidence 99884321 1 346677888999 999988653
No 438
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.73 E-value=5 Score=32.42 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCCeEEEEeCCchHhH-HHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVA-REVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|+.+|.|.-+.. ...++..+ .++++++.+++..+.++.. . .++. +..+ +...-..+|+||
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~--~~~~-l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPF--HLSE-LAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------Ceee--cHHH-HHHHhCCCCEEE
Confidence 4689999999853332 22333444 6999999998765555432 1 1221 1111 222234699999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
...+. .+ .-+.+.+.++|+++++-...
T Consensus 216 ~t~p~------~~----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 216 NTIPA------LV----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ECCCh------hh----hhHHHHHcCCCCcEEEEEcc
Confidence 86532 11 22455677888887764443
No 439
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.67 E-value=4.4 Score=32.27 Aligned_cols=84 Identities=21% Similarity=0.157 Sum_probs=49.3
Q ss_pred eEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEEC
Q psy4592 60 KVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITD 137 (197)
Q Consensus 60 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~ 137 (197)
+|..||+|. |.++..+.+. + .+|+++|.+++.++.+++.-. +.....+. +. ....|+|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hH----hcCCCEEEEc
Confidence 578899885 3455555444 2 589999999988877755310 11111221 11 2357999987
Q ss_pred CCCCCCCCcccccHHHHHHHHhhcCCCcEE
Q psy4592 138 SSDPVGPAESLFQASYFELMSRALRPGGIV 167 (197)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l 167 (197)
.+.. . ..+.++++...++++..+
T Consensus 65 vp~~-----~--~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LPIG-----L--LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCHH-----H--HHHHHHHHHHhCCCCcEE
Confidence 7521 1 145667777777766444
No 440
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.56 E-value=2.4 Score=33.02 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCH
Q psy4592 58 PKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDN 91 (197)
Q Consensus 58 ~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~ 91 (197)
..+|+.+||| .|+.....+.+.+..+++.+|.|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3589999997 566555544445667999998653
No 441
>KOG3924|consensus
Probab=86.54 E-value=2.2 Score=35.71 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred cCCCCCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh---cCCCC--CCCCCCCeEEEEcchHHH--Hh
Q psy4592 53 CSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY---LPGMA--VGLSDPRLTVHVGDGFRF--MS 125 (197)
Q Consensus 53 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~---~~~~~--~~~~~~~~~~~~~d~~~~--~~ 125 (197)
+.........|+|+|-|.....++...+...-.|+|+...-.+.+..+ +.... .+.....++.++++...- ..
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 333456789999999999988877766556677899865544443322 11100 111234577777775431 11
Q ss_pred hcCCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 126 EHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
.-....++|++|...... .+ .--++++..-+++|-+++-
T Consensus 268 eI~~eatvi~vNN~~Fdp---~L--~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 268 EIQTEATVIFVNNVAFDP---EL--KLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HHhhcceEEEEecccCCH---HH--HHhhHHHHhhCCCcceEec
Confidence 124578999998764322 11 1123477788899988875
No 442
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.33 E-value=9.4 Score=29.44 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=45.3
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--- 125 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--- 125 (197)
.++.+|..|++.| ++.++++.. ...++..++.+++-++...+.+.. ...++.++.+|+.+.- .
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT-----SGGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4568999997554 444444321 126888888887766655444432 1235667777754321 1
Q ss_pred hcCCceeEEEECCC
Q psy4592 126 EHQQEFDVIITDSS 139 (197)
Q Consensus 126 ~~~~~~D~I~~~~~ 139 (197)
..-++.|.++.+..
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 11257899998864
No 443
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.27 E-value=13 Score=28.70 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------h---
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------S--- 125 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~--- 125 (197)
.+++||..|+ +|+++..+++.. .+.+|+.++-+++..+...+.+.. ...++.++..|+.+.- .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG-----QGLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3568998886 555666655421 225888888887665544444332 1234667777765321 1
Q ss_pred hcCCceeEEEECCCC
Q psy4592 126 EHQQEFDVIITDSSD 140 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~ 140 (197)
..-++.|.++.+...
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 113468999987653
No 444
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.26 E-value=5.8 Score=32.51 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=59.1
Q ss_pred CeEEEEeCCc--hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCC----CC-CCC----CCCCeEEEEcchHHHHhhc
Q psy4592 59 KKVLIVGGGD--GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG----MA-VGL----SDPRLTVHVGDGFRFMSEH 127 (197)
Q Consensus 59 ~~vLdiG~G~--G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~----~~-~~~----~~~~~~~~~~d~~~~~~~~ 127 (197)
++|-.||+|+ .+++..++.. +.+|+..|.+++.++.+++.+.. .. .+. ...++++. .|..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--- 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--- 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh---
Confidence 6899999984 2344444444 37999999999877665442210 00 000 01233332 2333222
Q ss_pred CCceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 128 QQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 128 ~~~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...|+|+-..+... -....+++++-+.++|+.++..++
T Consensus 82 -~~aDlViEavpE~l-----~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 -ADADFIQESAPERE-----ALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred -cCCCEEEECCcCCH-----HHHHHHHHHHHHhCCCCeEEEECC
Confidence 45799997765211 123678899999999998666554
No 445
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.09 E-value=13 Score=28.21 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh--
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE-- 126 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~-- 126 (197)
++++||..|++. .++..+.+.. ...+++++.-+++-.+.+.+.... ..++.++.+|..+.- ..
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK------YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 346899999854 4554444321 225888988887765544333321 125677777765321 11
Q ss_pred -cCCceeEEEECCCCCCCCC-ccc------------ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 127 -HQQEFDVIITDSSDPVGPA-ESL------------FQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 127 -~~~~~D~I~~~~~~~~~~~-~~l------------~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.-+..|.++.+........ ... ..-.+++.+.+.++++|.+++.+
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1245798888764322110 000 00123556666778888777765
No 446
>PRK15076 alpha-galactosidase; Provisional
Probab=86.04 E-value=12 Score=31.96 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=42.7
Q ss_pred CeEEEEeCCc-hHhHH---HHh--cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEE-EcchHHHHhhcCCce
Q psy4592 59 KKVLIVGGGD-GGVAR---EVL--KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH-VGDGFRFMSEHQQEF 131 (197)
Q Consensus 59 ~~vLdiG~G~-G~~~~---~l~--~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~ 131 (197)
.+|..||+|+ |.... .++ ......+++.+|++++.++.+...+...... .....++. ..|..+.+. ..
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~-~~~~~~i~~ttD~~eal~----dA 76 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAES-LGASAKITATTDRREALQ----GA 76 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhC----CC
Confidence 3788999998 53221 222 2334458999999998877544432211000 12235555 566444343 36
Q ss_pred eEEEECCC
Q psy4592 132 DVIITDSS 139 (197)
Q Consensus 132 D~I~~~~~ 139 (197)
|+|+...-
T Consensus 77 DfVv~ti~ 84 (431)
T PRK15076 77 DYVINAIQ 84 (431)
T ss_pred CEEeEeee
Confidence 88888653
No 447
>PRK08324 short chain dehydrogenase; Validated
Probab=86.01 E-value=20 Score=32.47 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCeEEEEeCCchHhHHHHhc---CCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592 58 PKKVLIVGGGDGGVAREVLK---HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE-- 126 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~---~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~-- 126 (197)
++.||..|++. .++..+++ ..+ .+++.++.+++-.+.+.+.+.. . .++.++.+|+.+. +..
T Consensus 422 gk~vLVTGasg-gIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~-----~-~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAAG-GIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGG-----P-DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCCC-HHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhc-----c-CcEEEEEecCCCHHHHHHHHHHHH
Confidence 46788888643 44444333 223 5899999998776655554432 1 3567777775432 111
Q ss_pred -cCCceeEEEECCCCCCCCC-cccc--------------cHHHHHHHHhhcCC---CcEEEEEc
Q psy4592 127 -HQQEFDVIITDSSDPVGPA-ESLF--------------QASYFELMSRALRP---GGIVCSQA 171 (197)
Q Consensus 127 -~~~~~D~I~~~~~~~~~~~-~~l~--------------~~~~~~~~~~~Lkp---gG~l~~~~ 171 (197)
..+..|+||.+........ .... ...+++.+.+.+++ +|.+++.+
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1346899998764322110 0000 12345566666666 67777765
No 448
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.97 E-value=18 Score=30.63 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=64.4
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh----h-----c--
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS----E-----H-- 127 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~-----~-- 127 (197)
.+|-.+|.|-=++..++.....+..++|+||++..++...+-- ..+..-+..+.+. . +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence 5888899887666666554434479999999999888765421 1121122121111 0 0
Q ss_pred ---CCceeEEEECCCCCCCCC--ccc-ccHHHHHHHHhhcCCCcEEEEEcCCC
Q psy4592 128 ---QQEFDVIITDSSDPVGPA--ESL-FQASYFELMSRALRPGGIVCSQAGTL 174 (197)
Q Consensus 128 ---~~~~D~I~~~~~~~~~~~--~~l-~~~~~~~~~~~~LkpgG~l~~~~~~~ 174 (197)
-...|+++..-|.+.... +.+ +-....+.+.+.|++|-.+++.+..+
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 126788888776555422 111 11456677889999999999987554
No 449
>PRK07677 short chain dehydrogenase; Provisional
Probab=85.94 E-value=11 Score=29.03 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=43.4
Q ss_pred CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh---c
Q psy4592 59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE---H 127 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~---~ 127 (197)
+++|..|++.| ++..+.+. ..+.+++.++.+++..+.+.+.+.. ...++.++.+|..+. +.. .
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ-----FPGQVLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888888654 44443332 1125888889887766555444432 123677777775431 111 1
Q ss_pred CCceeEEEECCC
Q psy4592 128 QQEFDVIITDSS 139 (197)
Q Consensus 128 ~~~~D~I~~~~~ 139 (197)
-++.|.++.+..
T Consensus 76 ~~~id~lI~~ag 87 (252)
T PRK07677 76 FGRIDALINNAA 87 (252)
T ss_pred hCCccEEEECCC
Confidence 246899998763
No 450
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.91 E-value=2.1 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=18.4
Q ss_pred eEEEEeCC-chHhHHHHhcCCCCccEEEEEcC
Q psy4592 60 KVLIVGGG-DGGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 60 ~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
+||.+||| .|......+...+..+++.+|.|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58899987 33333332223455788888843
No 451
>KOG0022|consensus
Probab=85.89 E-value=17 Score=29.87 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=60.1
Q ss_pred CCCCeEEEEeCCchHhHHHH-hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh-cCCceeE
Q psy4592 56 PNPKKVLIVGGGDGGVAREV-LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G~G~~~~~l-~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~ 133 (197)
.++..|..+|+|.=+++... ++..+..+|.+||++++-.+.|++.-.- ...+ |+ ++. ..+.+.+.. .+.-+|.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT--e~iN-p~-d~~-~~i~evi~EmTdgGvDy 265 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT--EFIN-PK-DLK-KPIQEVIIEMTDGGVDY 265 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc--eecC-hh-hcc-ccHHHHHHHHhcCCceE
Confidence 45567788887764444333 2445668999999999999999886211 1112 22 221 135555544 3556776
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCC-cEEEEE
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPG-GIVCSQ 170 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~Lkpg-G~l~~~ 170 (197)
-+-.. .+ .+.++++....+.| |.-++.
T Consensus 266 sfEc~-----G~-----~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 266 SFECI-----GN-----VSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred EEEec-----CC-----HHHHHHHHHHhhcCCCeEEEE
Confidence 65322 11 45677777777888 765554
No 452
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.81 E-value=14 Score=28.39 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hh---
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MS--- 125 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~--- 125 (197)
.+++||..|+ +|.++..+++.. ...+++.+..+++-++.....+.. ...+++++.+|+.+. +.
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA-----EGGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578888885 445665555421 225789999888776555444322 123567777775421 11
Q ss_pred hcCCceeEEEECCC
Q psy4592 126 EHQQEFDVIITDSS 139 (197)
Q Consensus 126 ~~~~~~D~I~~~~~ 139 (197)
...++.|.|+.+..
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 11246899998765
No 453
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.68 E-value=12 Score=30.21 Aligned_cols=98 Identities=26% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCceeE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~ 133 (197)
++.+||..|+|. |..+..+++..+...+++++.+++..+.+++. .. ..-+.....+..+.+.. ....+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 567888877643 34445566655533677888777777766552 11 00111111222222222 1346898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+.... ....+..+.+.|+++|.++...
T Consensus 236 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSG----------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 885331 1346678889999999988875
No 454
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=85.59 E-value=21 Score=30.17 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=55.7
Q ss_pred eEEEEeCCchHhHHH--HhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCC--------CCCCeEEEEcchHHHHhhcC
Q psy4592 60 KVLIVGGGDGGVARE--VLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGL--------SDPRLTVHVGDGFRFMSEHQ 128 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~--l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~--------~~~~~~~~~~d~~~~~~~~~ 128 (197)
+|-.||+|.=+...+ +++. +.+|+++|.+++.++..++...... .++ ...++++ ..|..+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~---- 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAI---- 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHH----
Confidence 577889886544433 3333 2589999999988876554211100 000 0112332 23433322
Q ss_pred CceeEEEECCCCCCCCCccc---ccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 129 QEFDVIITDSSDPVGPAESL---FQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 129 ~~~D~I~~~~~~~~~~~~~l---~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...|+|+...+.+...+... .-....+.+.+.+++|-.++..+
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 34799998876544211110 01344566777888877666544
No 455
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.55 E-value=2.4 Score=33.42 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECCCCCCCCCcccccH
Q psy4592 72 AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQA 151 (197)
Q Consensus 72 ~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~~~~~~~~~~l~~~ 151 (197)
+.++.+.+...+|+++|.++..++.|++. .. +.-...+ .+.+ ..+|+|+...|... ..
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~---------~~~~~~~-~~~~----~~~DlvvlavP~~~-------~~ 59 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL-GI---------IDEASTD-IEAV----EDADLVVLAVPVSA-------IE 59 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TS---------SSEEESH-HHHG----GCCSEEEE-S-HHH-------HH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CC---------eeeccCC-HhHh----cCCCEEEEcCCHHH-------HH
Confidence 45666776668999999999998888653 11 1111222 2222 34799998775211 26
Q ss_pred HHHHHHHhhcCCCcEEEE
Q psy4592 152 SYFELMSRALRPGGIVCS 169 (197)
Q Consensus 152 ~~~~~~~~~LkpgG~l~~ 169 (197)
++++++...+++|+.+.=
T Consensus 60 ~~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 60 DVLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHCGS-TTSEEEE
T ss_pred HHHHHhhhhcCCCcEEEE
Confidence 788888888888766654
No 456
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.47 E-value=19 Score=29.50 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=53.7
Q ss_pred CeEEEEeCCchHhHH-HHhcCCCCccEEEEEcCHHHH-----HHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCce
Q psy4592 59 KKVLIVGGGDGGVAR-EVLKHPSVESAYLVEIDNRVI-----EVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEF 131 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~-~l~~~~~~~~v~~ve~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 131 (197)
.+|..||+|.=+.+. .++...+...++.+|++++.. +..... . ......++.. .|..+ + ...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~-~-----~~~~~~~I~~~~d~~~-l----~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN-V-----IAGSNSKVIGTNNYED-I----AGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh-h-----ccCCCeEEEECCCHHH-h----CCC
Confidence 589999998733333 222333334699999999853 222211 1 1122445654 66432 2 347
Q ss_pred eEEEECCCCCCCCCc--------ccc------cHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 132 DVIITDSSDPVGPAE--------SLF------QASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 132 D~I~~~~~~~~~~~~--------~l~------~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|+|+...-.+..+.. .+. -.++.+.+.+.. |+|.+++.++.
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP 130 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNP 130 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 999985533221111 000 123455555554 88877776543
No 457
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=85.47 E-value=13 Score=29.69 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=56.2
Q ss_pred CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592 56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~ 131 (197)
..+.++|..|.+ .|.....+++..+ .+++.++.+++-.+.++.. .. ...+.....+..+.+.. ....+
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKLERAKEL-GA------DYVIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CeEEecCChHHHHHHHHHhCCCCC
Confidence 345789999985 3444455555544 6788888888777766442 11 11121111122222221 13468
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+++.... ...+..+.+.|+++|.++...
T Consensus 237 d~~i~~~g-----------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 237 DVVVEHVG-----------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred cEEEECCc-----------HHHHHHHHHHhhcCCEEEEEe
Confidence 99986542 234577788999999988754
No 458
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.41 E-value=17 Score=30.19 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHH-HHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRV-IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.+.+||..|+|. |..+..+++..+ .++++++.+++. .+.+++ +.. ...+...+... +......+|+|
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~~~~~~~~a~~-lGa--------~~~i~~~~~~~-v~~~~~~~D~v 246 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFG-LRVTVISRSSEKEREAIDR-LGA--------DSFLVTTDSQK-MKEAVGTMDFI 246 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcC-CeEEEEeCChHHhHHHHHh-CCC--------cEEEcCcCHHH-HHHhhCCCcEE
Confidence 457899888752 334445566555 578888876543 455543 211 11110111111 22212358988
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+-... . ...+..+.+.++++|.++...
T Consensus 247 id~~G-----~-----~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 247 IDTVS-----A-----EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EECCC-----c-----HHHHHHHHHhhcCCCEEEEEc
Confidence 85331 1 335678889999999998764
No 459
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.40 E-value=14 Score=28.75 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=43.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH------Hhh--
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF------MSE-- 126 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~-- 126 (197)
..+++|..|. +|+++..+.+. ....+|+.++.+++-++...+.+.. ...++.++..|+.+. +..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ-----AGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----hCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3468888886 44555554432 1236899999887765544333322 123456677766431 111
Q ss_pred -cCCceeEEEECCC
Q psy4592 127 -HQQEFDVIITDSS 139 (197)
Q Consensus 127 -~~~~~D~I~~~~~ 139 (197)
..++.|+++.+..
T Consensus 82 ~~~~~iD~vi~~ag 95 (264)
T PRK07576 82 DEFGPIDVLVSGAA 95 (264)
T ss_pred HHcCCCCEEEECCC
Confidence 1246899998763
No 460
>KOG0023|consensus
Probab=85.20 E-value=5.7 Score=32.57 Aligned_cols=98 Identities=21% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc-chHHHHhhcCCceeE
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG-DGFRFMSEHQQEFDV 133 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~D~ 133 (197)
.++++|-.+|.| .|.++...++..+ .++++|+-+..--+.+-+.+.. ..-+... | .+.+..-.+..|.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG-~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d-~d~~~~~~~~~dg 249 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG-MRVTVISTSSKKKEEAIKSLGA--------DVFVDSTED-PDIMKAIMKTTDG 249 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC-cEEEEEeCCchhHHHHHHhcCc--------ceeEEecCC-HHHHHHHHHhhcC
Confidence 356788888864 6788888888876 7999999987555555554432 1111111 2 2233333355677
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
++.....- .+..++.+.+.||++|.+++..
T Consensus 250 ~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 250 GIDTVSNL--------AEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred cceeeeec--------cccchHHHHHHhhcCCEEEEEe
Confidence 76544211 1335577889999999999875
No 461
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.07 E-value=15 Score=28.00 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------h
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------E 126 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~ 126 (197)
.+++|..|+ +|.++..+.+.. .+.+|+.++.+++-.+...+.... ...++.++.+|+.+.-. .
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 457888885 555655555421 225899999887655444443322 12467788888653211 1
Q ss_pred cCCceeEEEECCC
Q psy4592 127 HQQEFDVIITDSS 139 (197)
Q Consensus 127 ~~~~~D~I~~~~~ 139 (197)
.-++.|.++.+.-
T Consensus 80 ~~~~id~lv~~ag 92 (241)
T PRK07454 80 QFGCPDVLINNAG 92 (241)
T ss_pred HcCCCCEEEECCC
Confidence 1246899998764
No 462
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=85.05 E-value=16 Score=28.75 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~ 131 (197)
.++..||..|+ +.|..+..+++..+ ..+++++.+++..+.+++. .. ..-+.....+..+.+.. ....+
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~~ 209 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALG-ARVIAAASSEEKLALARAL-GA------DHVIDYRDPDLRERVKALTGGRGV 209 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHc-CC------ceeeecCCccHHHHHHHHcCCCCc
Confidence 45679999998 34445555555544 6788999888877777542 11 11111122233222222 13468
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
|+++.... ...+..+.+.++++|.++..
T Consensus 210 d~v~~~~g-----------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 210 DVVYDPVG-----------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEEEECcc-----------HHHHHHHHHhhccCCEEEEE
Confidence 98885431 12445677888899987754
No 463
>KOG1201|consensus
Probab=85.04 E-value=14 Score=29.92 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=45.7
Q ss_pred CCCeEEEEeCCchHhHHHH----hcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHH---H------
Q psy4592 57 NPKKVLIVGGGDGGVAREV----LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR---F------ 123 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l----~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~---~------ 123 (197)
.++.||.-|+|.| +++++ ++++ +.+...|++++..+...+.+.+. + +++...+|..+ .
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~-----g-~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKI-----G-EAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhc-----C-ceeEEEecCCCHHHHHHHHHH
Confidence 3568999998887 44444 4443 58889999987665554444431 1 45555555432 1
Q ss_pred HhhcCCceeEEEECCC
Q psy4592 124 MSEHQQEFDVIITDSS 139 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~ 139 (197)
+...-+..|++|.|.-
T Consensus 108 Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHhcCCceEEEeccc
Confidence 1223568999998864
No 464
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.04 E-value=10 Score=31.22 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=48.7
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|..||+|. |......++..+ .+|.++|.++.-.. ... . ... ..+..+.+. ..|+|+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~-~~~-~----------~~~--~~~l~ell~----~aDiV~ 209 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG-MRILYYSRTRKPEA-EKE-L----------GAE--YRPLEELLR----ESDFVS 209 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CEEEEECCCCChhh-HHH-c----------CCE--ecCHHHHHh----hCCEEE
Confidence 457999999976 332222333344 58999998654211 111 0 112 235555443 379999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~ 169 (197)
...|...... +++. ++....+|||.+|+-
T Consensus 210 l~lP~t~~T~-~~i~----~~~~~~mk~ga~lIN 238 (333)
T PRK13243 210 LHVPLTKETY-HMIN----EERLKLMKPTAILVN 238 (333)
T ss_pred EeCCCChHHh-hccC----HHHHhcCCCCeEEEE
Confidence 9887533221 2222 356667888776654
No 465
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=84.97 E-value=10 Score=29.03 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=44.3
Q ss_pred CeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH---------hhc
Q psy4592 59 KKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM---------SEH 127 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 127 (197)
+++|..|+ +|.++..+.+.. ...++++++.+++..+.....+.. ...++.++.+|..+.- ...
T Consensus 2 ~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (255)
T TIGR01963 2 KTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD-----AGGSVIYLVADVTKEDEIADMIAAAAAE 75 (255)
T ss_pred CEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 46777874 556666655431 125899999887665554443321 1235777777765421 111
Q ss_pred CCceeEEEECCC
Q psy4592 128 QQEFDVIITDSS 139 (197)
Q Consensus 128 ~~~~D~I~~~~~ 139 (197)
....|.|+.+..
T Consensus 76 ~~~~d~vi~~a~ 87 (255)
T TIGR01963 76 FGGLDILVNNAG 87 (255)
T ss_pred cCCCCEEEECCC
Confidence 346899998764
No 466
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=84.92 E-value=18 Score=29.75 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+| .|..+..+++..+...+++++.++...+.++. +.. ..-+.....+..+.+.. ....+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~------~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA------THTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC------eEEeCCCCccHHHHHHHHcCCCCCC
Confidence 455789998764 34455556666553358888888887777753 221 00111111122222222 135699
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+++.... . ...+..+.+.|+++|.++..
T Consensus 254 ~vld~~~-----~-----~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 254 YAFEAVG-----R-----AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEEcCC-----C-----hHHHHHHHHHhhcCCeEEEE
Confidence 8885431 0 24567888999999998765
No 467
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.79 E-value=6.9 Score=34.50 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=57.3
Q ss_pred CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCceeE
Q psy4592 59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEFDV 133 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~D~ 133 (197)
.+++.+|+|.= +..+++. ..+..++.+|.|++.++.+++. ....+.+|+.+. +.. .-+++|.
T Consensus 418 ~hiiI~G~G~~--G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRV--GSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChH--HHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 58888888863 3333331 1126899999999988888652 366888887753 222 2458898
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcC
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~ 172 (197)
++........ ...+-.+.+..+|+-.++....
T Consensus 485 viv~~~~~~~-------~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 485 LLLTIPNGYE-------AGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred EEEEcCChHH-------HHHHHHHHHHHCCCCeEEEEEC
Confidence 8765532111 1123334455678888777653
No 468
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.55 E-value=17 Score=28.14 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=44.7
Q ss_pred CeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHH------hh---c
Q psy4592 59 KKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SE---H 127 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~---~ 127 (197)
+++|..|++. +++..+.+. ....+++.++.+++.++...+... ..++.++.+|+.+.- .. .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4688888754 455544432 112688899988876665554432 235777777766422 11 1
Q ss_pred -CCceeEEEECCCC
Q psy4592 128 -QQEFDVIITDSSD 140 (197)
Q Consensus 128 -~~~~D~I~~~~~~ 140 (197)
.++.|+++.+...
T Consensus 74 ~~~~id~vi~~ag~ 87 (260)
T PRK08267 74 TGGRLDVLFNNAGI 87 (260)
T ss_pred cCCCCCEEEECCCC
Confidence 3578999987643
No 469
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.50 E-value=3.4 Score=30.54 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=20.6
Q ss_pred eEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592 60 KVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN 91 (197)
Q Consensus 60 ~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~ 91 (197)
+|+.+|||. |+.....+...+..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999984 54333333333556899999764
No 470
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.44 E-value=12 Score=29.89 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=52.8
Q ss_pred eEEEEeCCchHhHH--HHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEE---EEcchHHHHhhcCCceeEE
Q psy4592 60 KVLIVGGGDGGVAR--EVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV---HVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 60 ~vLdiG~G~G~~~~--~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~D~I 134 (197)
+|+.+|+|.-+... .+.+. + ..|+.++.+++.++..++.--.. . .. .... ...|. .. .+.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~g~~~-~--~~-~~~~~~~~~~~~----~~-~~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-G-HDVTLVARRGAHLDALNENGLRL-E--DG-EITVPVLAADDP----AE-LGPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHHcCCcc-c--CC-ceeecccCCCCh----hH-cCCCCEE
Confidence 68899998644332 23333 2 68999998777766555431100 0 01 1110 01121 11 2578999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+...... . ....++.+...+.++..+++..
T Consensus 71 ila~k~~-----~--~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 71 ILAVKAY-----Q--LPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred EEecccc-----c--HHHHHHHHhhhcCCCCEEEEec
Confidence 9876421 1 2667888888888877666543
No 471
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.32 E-value=4 Score=33.01 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=53.8
Q ss_pred CeEEEEeCCc-h-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhh--cCCCCCCCCCCCeEEE--EcchHHHHhhcCCcee
Q psy4592 59 KKVLIVGGGD-G-GVAREVLKHPSVESAYLVEIDNRVIEVSKKY--LPGMAVGLSDPRLTVH--VGDGFRFMSEHQQEFD 132 (197)
Q Consensus 59 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~--~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~D 132 (197)
.+|+.+|+|. | .++..|.+.+ ..|+.++-+++-++..++. +.... ......+. ..+ +...+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence 4799999984 3 3444455443 6899999887666655542 11100 01111111 111 11235799
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+|+...-.+ + +.+.++.+...+.++..+++-
T Consensus 73 ~viv~vK~~-----~--~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 73 RLLLACKAY-----D--AEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEEEECCHH-----h--HHHHHHHHHhhCCCCCEEEEE
Confidence 998765211 1 266788899999999876543
No 472
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.10 E-value=14 Score=30.97 Aligned_cols=95 Identities=13% Similarity=0.212 Sum_probs=58.4
Q ss_pred eEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHH-HhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEEECC
Q psy4592 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS-KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 60 ~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~~~~ 138 (197)
+||.++-..|+++..++...+ . .+ .|.-+.+.+ ++|+.. +++....+++.... + ...+.+|+|+.-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-~---~~-~ds~~~~~~~~~n~~~--n~~~~~~~~~~~~~--~---~~~~~~d~vl~~~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-Y---SI-GDSYISELATRENLRL--NGIDESSVKFLDST--A---DYPQQPGVVLIKV 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-C---ee-ehHHHHHHHHHHHHHH--cCCCcccceeeccc--c---cccCCCCEEEEEe
Confidence 899999999999999885433 2 22 333344433 345443 22222335554332 2 1235699999887
Q ss_pred CCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 139 SDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|.... .-+..+..+.++|.||+.++.-.
T Consensus 115 PK~~~-----~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 115 PKTLA-----LLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred CCCHH-----HHHHHHHHHHhhCCCCCEEEEEE
Confidence 63221 12567889999999999977543
No 473
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.01 E-value=20 Score=29.07 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHH-HHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCce
Q psy4592 57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVI-EVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEF 131 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 131 (197)
.+.+|+.+|+|. ++..++ ...+...++.++.+++-. +++++ +. . .... .|..+. ...+
T Consensus 177 ~~~~V~ViGaG~--iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g-------~---~~~~~~~~~~~----l~~a 239 (311)
T cd05213 177 KGKKVLVIGAGE--MGELAAKHLAAKGVAEITIANRTYERAEELAKE-LG-------G---NAVPLDELLEL----LNEA 239 (311)
T ss_pred cCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cC-------C---eEEeHHHHHHH----HhcC
Confidence 467999999864 333322 223346899999998654 45544 22 1 1221 122222 2458
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
|+|+...+.+.. ...++.+.+..+.++.+++-...
T Consensus 240 DvVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 240 DVVISATGAPHY-------AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CEEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEeCC
Confidence 999987653222 23334444333346778877644
No 474
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.99 E-value=3.7 Score=34.09 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=22.2
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCH
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDN 91 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~ 91 (197)
..+||.+|||. |+.....+...+..+++.+|-+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35999999984 44333333344567888888654
No 475
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.90 E-value=15 Score=29.59 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCCeEEEEeCC--chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592 56 PNPKKVLIVGGG--DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~ 131 (197)
..+.+||..|++ .|..+..+++..+ .+++++.-+++-.+.+++ +.. ..-+.....+..+.+.. ....+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMG-LRVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence 445799999986 4556666777665 588899988877776643 221 00111111122222222 13569
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+++.+.. ....+..+.+.|+++|.++...
T Consensus 236 d~vl~~~~----------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAV----------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCC----------chHHHHHHHHHhhcCCEEEEec
Confidence 99985331 1345677889999999998754
No 476
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=83.86 E-value=4.9 Score=29.51 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHH-HHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNR-VIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+.++|..||.|+=+.+.++-.+-....|+...-... -.+.|++. . |...+..+... ..|+|+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~---------G----f~v~~~~eAv~----~aDvV~ 65 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD---------G----FEVMSVAEAVK----KADVVM 65 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT---------T-----ECCEHHHHHH----C-SEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC---------C----CeeccHHHHHh----hCCEEE
Confidence 357999999997665555443323356665555443 66666652 1 22245555443 489999
Q ss_pred ECCCCCCCCCcccccHHHH-HHHHhhcCCCcEEEEE
Q psy4592 136 TDSSDPVGPAESLFQASYF-ELMSRALRPGGIVCSQ 170 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~-~~~~~~LkpgG~l~~~ 170 (197)
+-.|+ .. ..+.+ +++...|+||-.+++.
T Consensus 66 ~L~PD-----~~--q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 66 LLLPD-----EV--QPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp E-S-H-----HH--HHHHHHHHHHHHS-TT-EEEES
T ss_pred EeCCh-----HH--HHHHHHHHHHhhCCCCCEEEeC
Confidence 77642 11 13444 8889999999999984
No 477
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.67 E-value=14 Score=29.95 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCeEEEEeCC-chHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-hcCCceeEE
Q psy4592 57 NPKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-EHQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~D~I 134 (197)
++.+||..|+| .|..+..+++..+...+++++.+++..+.+++. .. . .-+.....+..+.+. ...+.+|++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA-----D-VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC-----c-EEecCCCccHHHHHHHHhCCCCcEE
Confidence 45788888764 233444455655544788899888888777552 21 0 001111111111122 222368999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
+.... . ...+..+.+.|+++|.++..
T Consensus 248 id~~g-----~-----~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 IDFVN-----N-----SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EECCC-----C-----HHHHHHHHHHhhcCCeEEEE
Confidence 84331 0 34578889999999998864
No 478
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.66 E-value=16 Score=28.37 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--------- 125 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------- 125 (197)
..+++|..|++.| ++.++++. ....+++.++-+++-++.+.+.+.. ...++.++.+|+.+.-.
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE-----LGIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4468888888664 44443331 1125788888877665554444332 12357777777653221
Q ss_pred hcCCceeEEEECCCC
Q psy4592 126 EHQQEFDVIITDSSD 140 (197)
Q Consensus 126 ~~~~~~D~I~~~~~~ 140 (197)
...++.|.++.+...
T Consensus 83 ~~~~~id~li~~ag~ 97 (265)
T PRK07097 83 KEVGVIDILVNNAGI 97 (265)
T ss_pred HhCCCCCEEEECCCC
Confidence 112568999988753
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.63 E-value=23 Score=30.03 Aligned_cols=72 Identities=32% Similarity=0.322 Sum_probs=46.6
Q ss_pred CCCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHH--Hhh-cCCce
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRF--MSE-HQQEF 131 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~~~ 131 (197)
..++++.+|+|.= +..+++. .....++.+|.+++.++.+++.. ..+.++.+|+.+. +.. .-.++
T Consensus 230 ~~~~iiIiG~G~~--g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNI--GYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHH--HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 3578999999753 3333321 12368999999999888776643 2456788887532 222 34578
Q ss_pred eEEEECCC
Q psy4592 132 DVIITDSS 139 (197)
Q Consensus 132 D~I~~~~~ 139 (197)
|.|++...
T Consensus 299 ~~vi~~~~ 306 (453)
T PRK09496 299 DAFIALTN 306 (453)
T ss_pred CEEEECCC
Confidence 98887654
No 480
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.63 E-value=16 Score=29.89 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=54.8
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcch----HHHHhhc-CCc
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG----FRFMSEH-QQE 130 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~-~~~ 130 (197)
.+.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. .. . .-+.....+. ....... ...
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA-----D-ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----C-eEEcCcccccHHHHHHHHHHhCCCC
Confidence 567899987642 22334455555533889999888877777542 21 0 0111111111 1111211 346
Q ss_pred eeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 131 FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 131 ~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+|+.... . ...+....+.|+++|.++...
T Consensus 250 ~d~vid~~g-----~-----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG-----H-----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC-----C-----hHHHHHHHHHhccCCEEEEEc
Confidence 999885431 1 235677889999999998654
No 481
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.45 E-value=18 Score=29.16 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=50.8
Q ss_pred EEEeCCc-hHhHHHHhcCCCC-ccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEE-cchHHHHhhcCCceeEEEECC
Q psy4592 62 LIVGGGD-GGVAREVLKHPSV-ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV-GDGFRFMSEHQQEFDVIITDS 138 (197)
Q Consensus 62 LdiG~G~-G~~~~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~D~I~~~~ 138 (197)
..||+|. |....+.+...+. .+++.+|++++.++-....+......+ ...++.. .|. +.+ ...|+|+...
T Consensus 2 ~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~--~~~~i~~~~~~-~~l----~~aDiVIita 74 (300)
T cd00300 2 TIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL--ATGTIVRGGDY-ADA----ADADIVVITA 74 (300)
T ss_pred EEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc--CCCeEEECCCH-HHh----CCCCEEEEcC
Confidence 4678875 4333333323232 479999998876553333222211111 1234443 442 222 4479999866
Q ss_pred CCCCCCC---cccc--c----HHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 139 SDPVGPA---ESLF--Q----ASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 139 ~~~~~~~---~~l~--~----~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
-.+..+. ..+. + .++.+.+.+. .|+|.+++.++.
T Consensus 75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP 117 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNP 117 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCh
Confidence 5433221 1111 1 2233344443 499998886643
No 482
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.42 E-value=6.6 Score=30.17 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchH--------H---H
Q psy4592 57 NPKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF--------R---F 123 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~--------~---~ 123 (197)
..++||..|+ +|.++..+++.. .+.++++++.+++-.+...+.+... ...++.++..|+. + .
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence 4568888886 555665544321 2268899998876655444433321 1234556555542 1 1
Q ss_pred HhhcCCceeEEEECCC
Q psy4592 124 MSEHQQEFDVIITDSS 139 (197)
Q Consensus 124 ~~~~~~~~D~I~~~~~ 139 (197)
+....++.|.|+.+..
T Consensus 86 ~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 86 IEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHhCCCCEEEECCc
Confidence 2222357899998764
No 483
>PLN02928 oxidoreductase family protein
Probab=83.30 E-value=21 Score=29.58 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC-CCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA-VGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
.+++|..+|.|. |......++..+ .+|++++.+..-.......++... ........ ...+..+.+. ..|+|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~----~aDiV 230 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFG-VKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG----EADIV 230 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-CEEEEECCCCChhhhhhhccccccccccccccC--cccCHHHHHh----hCCEE
Confidence 457999999986 433333444444 689998875321111000000000 00000001 1234444443 47999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
+...|..... .+++. ++..+.||||.+|+ |+..
T Consensus 231 vl~lPlt~~T-~~li~----~~~l~~Mk~ga~lI-NvaR 263 (347)
T PLN02928 231 VLCCTLTKET-AGIVN----DEFLSSMKKGALLV-NIAR 263 (347)
T ss_pred EECCCCChHh-hcccC----HHHHhcCCCCeEEE-ECCC
Confidence 9988754332 23333 34556778876554 5433
No 484
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.30 E-value=15 Score=28.78 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCCCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCce
Q psy4592 56 PNPKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~ 131 (197)
.++.+||..|+ +.|..+..+++..+ ..++++..+++..+.+++ +.. ..-+.....+..+.+.. ....+
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALG-ATVIGTVSSEEKAELARA-AGA------DHVINYRDEDFVERVREITGGRGV 206 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH-CCC------CEEEeCCchhHHHHHHHHcCCCCe
Confidence 35679999995 35555566666655 678888888888777754 221 00011111122222222 13469
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+++.... ......+.+.|+++|.++...
T Consensus 207 d~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 207 DVVYDGVG-----------KDTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred eEEEECCC-----------cHhHHHHHHhhccCcEEEEEe
Confidence 99985332 124466788899999888653
No 485
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.27 E-value=2.9 Score=34.98 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
...+|+.+|||. |......+...+..+++.+|-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 346899999974 5444443334455789999987
No 486
>PRK06194 hypothetical protein; Provisional
Probab=83.25 E-value=20 Score=28.12 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=44.5
Q ss_pred CCeEEEEeCCchHhHHHHhcC--CCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh--h-------
Q psy4592 58 PKKVLIVGGGDGGVAREVLKH--PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--E------- 126 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~------- 126 (197)
++++|..|++ |+++..+++. ..+.+++.++.+++.++...+.+.. ...++.++.+|+.+.-. .
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678888765 4455554432 1126888999887665544333321 12357778888653211 1
Q ss_pred cCCceeEEEECCCC
Q psy4592 127 HQQEFDVIITDSSD 140 (197)
Q Consensus 127 ~~~~~D~I~~~~~~ 140 (197)
..++.|+|+.+...
T Consensus 80 ~~g~id~vi~~Ag~ 93 (287)
T PRK06194 80 RFGAVHLLFNNAGV 93 (287)
T ss_pred HcCCCCEEEECCCC
Confidence 12468999998754
No 487
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.23 E-value=18 Score=27.53 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCeEEEEeCCchHhHHHHhcCC--CCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh---------h
Q psy4592 58 PKKVLIVGGGDGGVAREVLKHP--SVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS---------E 126 (197)
Q Consensus 58 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~ 126 (197)
+++||..|++ |.++..+.+.. .+.+++++.-+++-.....+.+.. ...++.++.+|..+.-. .
T Consensus 6 ~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 6 GRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-----AGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4589988864 45555544321 125788888886554444333322 22457788877654211 1
Q ss_pred cCCceeEEEECCCC
Q psy4592 127 HQQEFDVIITDSSD 140 (197)
Q Consensus 127 ~~~~~D~I~~~~~~ 140 (197)
..+++|.|+.+...
T Consensus 80 ~~~~~d~vi~~ag~ 93 (251)
T PRK12826 80 DFGRLDILVANAGI 93 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 12468999988643
No 488
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.19 E-value=3.7 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592 58 PKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 58 ~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
..+||.+|||. |......+...+..+++.+|.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35999999875 3322222223456789999865
No 489
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=83.07 E-value=17 Score=29.32 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCCCeEEEEeCC-chHhHHHHhcCCCCcc-EEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHh-h-cCCce
Q psy4592 56 PNPKKVLIVGGG-DGGVAREVLKHPSVES-AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS-E-HQQEF 131 (197)
Q Consensus 56 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~ 131 (197)
.++.+||..|+| .|..+..+++..+ .+ ++++.-+++..+.+++. .. ..-+.....+..+.+. . ....+
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~v 235 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASG-ARKVIVSDLNEFRLEFAKKL-GA------DYTIDAAEEDLVEKVRELTDGRGA 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh-CC------cEEecCCccCHHHHHHHHhCCcCC
Confidence 456789999864 3444455555544 45 88888888777766542 21 0001111112212121 1 23458
Q ss_pred eEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 132 DVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 132 D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
|+|+.... ....+..+.+.|+++|.++...
T Consensus 236 d~vld~~~----------~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 236 DVVIVATG----------SPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CEEEECCC----------ChHHHHHHHHHhhcCCEEEEEe
Confidence 99985432 0346678889999999988754
No 490
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.97 E-value=4.3 Score=31.09 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcC
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEID 90 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~ 90 (197)
...+|+.+|||. |+.....+...+..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 345999999984 4433333333355789999987
No 491
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.91 E-value=10 Score=24.47 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=48.6
Q ss_pred eEEEEeCCchHhH--HHHhcCC-CCccEEEE-EcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 60 KVLIVGGGDGGVA--REVLKHP-SVESAYLV-EIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 60 ~vLdiG~G~G~~~--~~l~~~~-~~~~v~~v-e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+|..||+|.=+.+ ..+.+.. ...+++.+ +.+++-.+..++.++ +.+...+..+..+. .|+|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQE----ADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHHH----TSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhcc----CCEEE
Confidence 3566777653322 2233332 23577745 999988877766542 33444455555543 79999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEE
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~ 168 (197)
...+ +..+ .+.++++ ..+.++..++
T Consensus 67 lav~-----p~~~--~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 67 LAVK-----PQQL--PEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp E-S------GGGH--HHHHHHH-HHHHTTSEEE
T ss_pred EEEC-----HHHH--HHHHHHH-hhccCCCEEE
Confidence 8763 2221 5677777 5666666655
No 492
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=82.80 E-value=14 Score=25.92 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCCeEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 57 NPKKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 57 ~~~~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
..++||.+|+|.-+ ....+... +..+++.+.-+.+-.+...+.+. ..++++..-+ + +.....++|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~--~-~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLE--D-LEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGG--G-HCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHH--H-HHHHHhhCCeE
Confidence 56799999996432 22333344 44679999988765554444332 2345555433 2 11112469999
Q ss_pred EECCCCCC
Q psy4592 135 ITDSSDPV 142 (197)
Q Consensus 135 ~~~~~~~~ 142 (197)
+...+...
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98876433
No 493
>KOG1198|consensus
Probab=82.73 E-value=11 Score=31.31 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCCeEEEEeCCch--HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhc-CCcee
Q psy4592 56 PNPKKVLIVGGGDG--GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEH-QQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~G--~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D 132 (197)
..++.||.+|.++| .++..+++... ...+..--+++-++++++.=. ..-+++...|..+..... ...||
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA-------d~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA-------DEVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCC-------cEeecCCCHHHHHHHHhhcCCCcc
Confidence 45679999998766 45566777765 455555667788888877521 123444445555544432 56899
Q ss_pred EEEECCC
Q psy4592 133 VIITDSS 139 (197)
Q Consensus 133 ~I~~~~~ 139 (197)
+|+-...
T Consensus 228 vVlD~vg 234 (347)
T KOG1198|consen 228 VVLDCVG 234 (347)
T ss_pred EEEECCC
Confidence 9997664
No 494
>PRK06436 glycerate dehydrogenase; Provisional
Probab=82.66 E-value=23 Score=28.76 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=48.5
Q ss_pred CCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 57 NPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 57 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+++|..+|+|. |.-...+++..+ .++.+++.+..- . .......+..+.+. ..|+|+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG-~~V~~~~r~~~~--------~---------~~~~~~~~l~ell~----~aDiv~ 178 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFG-MNIYAYTRSYVN--------D---------GISSIYMEPEDIMK----KSDFVL 178 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CEEEEECCCCcc--------c---------CcccccCCHHHHHh----hCCEEE
Confidence 457999999985 433233344444 688898865210 0 11111235445443 479999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEcCC
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~~~ 173 (197)
...|...... +++. +.....||||. +++|+..
T Consensus 179 ~~lp~t~~T~-~li~----~~~l~~mk~ga-~lIN~sR 210 (303)
T PRK06436 179 ISLPLTDETR-GMIN----SKMLSLFRKGL-AIINVAR 210 (303)
T ss_pred ECCCCCchhh-cCcC----HHHHhcCCCCe-EEEECCC
Confidence 9887543322 2222 34555788865 5555533
No 495
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=82.63 E-value=13 Score=32.22 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=50.8
Q ss_pred CCCeEEEEeCCchHhHHHHh---cCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeE
Q psy4592 57 NPKKVLIVGGGDGGVAREVL---KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDV 133 (197)
Q Consensus 57 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~ 133 (197)
.+++|+.+|+|. ++..++ +..+ .+|+++|.+|.....+... ..++ .+..+.+ ...|+
T Consensus 253 aGKtVgVIG~G~--IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~--~~leell----~~ADI 312 (476)
T PTZ00075 253 AGKTVVVCGYGD--VGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQV--VTLEDVV----ETADI 312 (476)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Ccee--ccHHHHH----hcCCE
Confidence 568999999996 333333 3333 6899999998754333221 1222 2333433 35899
Q ss_pred EEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEE
Q psy4592 134 IITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQ 170 (197)
Q Consensus 134 I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~ 170 (197)
|+.... ..++++ .+..+.||||++++-.
T Consensus 313 VI~atG-----t~~iI~----~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 313 FVTATG-----NKDIIT----LEHMRRMKNNAIVGNI 340 (476)
T ss_pred EEECCC-----cccccC----HHHHhccCCCcEEEEc
Confidence 997642 222222 4667789999998854
No 496
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.61 E-value=18 Score=29.17 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=54.7
Q ss_pred eEEEEeCCchH--hHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCC--CCCC-CCCeEEEEcchHHHHhhcCCceeEE
Q psy4592 60 KVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA--VGLS-DPRLTVHVGDGFRFMSEHQQEFDVI 134 (197)
Q Consensus 60 ~vLdiG~G~G~--~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~-~~~~~~~~~d~~~~~~~~~~~~D~I 134 (197)
+|..||+|.=+ ++..+++. + ..++.++.+++.++..++...... .... ..++.. ..|..+.. +..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-G-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----ADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----hCCCEE
Confidence 68899987432 22333333 2 578999999888776655321100 0000 012322 23433322 357999
Q ss_pred EECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+...+.. . .++.++.+...++++..++...
T Consensus 76 i~~v~~~-----~--~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 76 LVAVPSQ-----A--LREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EEeCCHH-----H--HHHHHHHHHhhcCCCCEEEEEe
Confidence 9877531 1 2667788888888877665443
No 497
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=82.54 E-value=19 Score=29.89 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=54.8
Q ss_pred CCCCeEEEEeCCch-HhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEc---chHHHHhh-c-CC
Q psy4592 56 PNPKKVLIVGGGDG-GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG---DGFRFMSE-H-QQ 129 (197)
Q Consensus 56 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~-~-~~ 129 (197)
..+.+||..|+|.= ..+..+++..+...+++++.+++-.+.+++. .. ..-+..... +..+.+.. . ..
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GA------DYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEEcccccccccHHHHHHHhcCCC
Confidence 45578888876422 2223345555533788999888877777663 11 001111111 22221221 1 34
Q ss_pred ceeEEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 130 EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 130 ~~D~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.+|+|+.... .. ...+..+.+.|+++|.++...
T Consensus 275 gvDvvld~~g-----~~----~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAAG-----AP----PATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECCC-----Cc----HHHHHHHHHHHHcCCEEEEEC
Confidence 6998884321 11 335677888999999998753
No 498
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=82.33 E-value=15 Score=29.28 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCeEEEEeC--CchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 58 PKKVLIVGG--GDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 58 ~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
+.+||..|+ +.|..+..+++..+ .++++++.+++-.+.+++. .. . .-+.....+...........+|+|+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~-----~-~v~~~~~~~~~~~~~~~~~~~d~vl 218 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLG-YEVVASTGKADAADYLKKL-GA-----K-EVIPREELQEESIKPLEKQRWAGAV 218 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHc-CC-----C-EEEcchhHHHHHHHhhccCCcCEEE
Confidence 468999987 34445555666555 5788888888887777552 21 0 0011000011111111234589887
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
.... ...++.+.+.|+++|.++...
T Consensus 219 d~~g-----------~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPVG-----------GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECCc-----------HHHHHHHHHHhhcCCEEEEEe
Confidence 3321 235677888999999988764
No 499
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=82.14 E-value=25 Score=28.37 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=54.2
Q ss_pred CCCCeEEEEeCCc-hHhHHHHhcCCCCccEEEEEcCHHHHHHHHhhcCCCCCCCCCCCeEEEEcchHHHHhh--cCCcee
Q psy4592 56 PNPKKVLIVGGGD-GGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD 132 (197)
Q Consensus 56 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D 132 (197)
.++.+||..|+|. |..+..+++..+..++++++.+++-.+.+++. .. .-+.....+....+.. ....+|
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GA-------EPINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CC-------eEEecCCcCHHHHHHHHhCCCCCC
Confidence 3457888887531 22333445555433788888877776666552 21 0011111122222221 234689
Q ss_pred EEEECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 133 VIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 133 ~I~~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
+|+.... . ...+..+.+.|+++|.++...
T Consensus 238 vvid~~~-----~-----~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVG-----G-----AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCC-----C-----HHHHHHHHHhcccCCEEEEEC
Confidence 8885431 1 346678889999999988654
No 500
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=81.88 E-value=23 Score=29.12 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred CeEEEEeCCchHhHHHHhcCCCCccEEEEEcCHHHHHHHHhh---cCCCCCCCCCCCeEEEEcchHHHHhhcCCceeEEE
Q psy4592 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY---LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135 (197)
Q Consensus 59 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~ve~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~I~ 135 (197)
.+|..||.|+.+.+.+.........|+.--.+|+.++..... -+.+.+-.-++++. ...|..+.+. .+|+|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~-at~Dl~~a~~----~ad~iv 76 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK-ATTDLAEALD----GADIIV 76 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccc-cccCHHHHHh----cCCEEE
Confidence 478899999876655533221225778888888887766543 11110000112222 2345544443 389999
Q ss_pred ECCCCCCCCCcccccHHHHHHHHhhcCCCcEEEEEc
Q psy4592 136 TDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQA 171 (197)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~LkpgG~l~~~~ 171 (197)
...|.... .+.++++...++++-.++.-+
T Consensus 77 ~avPs~~~-------r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 77 IAVPSQAL-------REVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred EECChHHH-------HHHHHHHhhhccCCCeEEEEe
Confidence 87763222 456666666666666666543
Done!