RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4592
(197 letters)
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 299 bits (767), Expect = e-103
Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL++++ Y + S +G L+LDG+IQ TE DEF+Y EM+ +P+
Sbjct: 15 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 74
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
PK VL+VGGGDGG+ RE+ K+ SVE+ + EID VIEVSK Y ++ G D R+
Sbjct: 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 134
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V + D +F+ +DVII DSSDP+GPAE+LF +++E + AL+P G +Q +
Sbjct: 135 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194
Query: 174 LWYSLDCVGNTLQHCASVFP 193
LW + + N + + +F
Sbjct: 195 LWIHVGTIKNMIGYAKKLFK 214
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 300 bits (769), Expect = e-103
Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL++++ Y + S +G L+LDG+IQ TE DEF+Y EM+ +P+
Sbjct: 53 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 112
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
PK VL+VGGGDGG+ RE+ K+ SVE+ + EID VIEVSK Y ++ G D R+
Sbjct: 113 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 172
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V + D +F+ +DVII DSSDP+GPAE+LF +++E + AL+P G +Q +
Sbjct: 173 NVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232
Query: 174 LWYSLDCVGNTLQHCASVFP 193
LW + + N + + +F
Sbjct: 233 LWIHVGTIKNMIGYAKKLFK 252
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis
elegans} SCOP: c.66.1.17
Length = 314
Score = 299 bits (767), Expect = e-103
Identities = 103/200 (51%), Positives = 136/200 (68%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SLQV++ + S +G L+LDGI+Q TE DEFSY EM+A LP+
Sbjct: 45 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 104
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+HP+PK+VLI+GGGDGG+ REVLKH SVE + EID VI+V+KK+LPGM+ G S P+L
Sbjct: 105 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 164
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
+ GDGF F+ H+ EFDVIITDSSDPVGPAESLF SY+EL+ AL+ GI+ SQ +
Sbjct: 165 DLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224
Query: 174 LWYSLDCVGNTLQHCASVFP 193
+W L + + + +FP
Sbjct: 225 VWLHLPLIAHLVAFNRKIFP 244
>2o07_A Spermidine synthase; structural genomics, structural genomics
consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo
sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
3rw9_A*
Length = 304
Score = 296 bits (759), Expect = e-102
Identities = 120/200 (60%), Positives = 145/200 (72%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G +LSLQVE+ + S K +G L+LDG+IQCTE DEFSY EMIA LPLC
Sbjct: 32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
SHPNP+KVLI+GGGDGGV REV+KHPSVES EID VI+VSKK+LPGMA+G S +L
Sbjct: 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
T+HVGDGF FM ++Q FDVIITDSSDP+GPAESLF+ SY++LM AL+ G++C Q
Sbjct: 152 TLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211
Query: 174 LWYSLDCVGNTLQHCASVFP 193
W LD + Q C S+FP
Sbjct: 212 QWLHLDLIKEMRQFCQSLFP 231
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 294 bits (755), Expect = e-102
Identities = 84/200 (42%), Positives = 130/200 (65%), Gaps = 8/200 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
++++V + + + +EFG L LDG++ +E DEF Y EM+A +PL
Sbjct: 12 NFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLF 71
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+HPNP+ VL+VGGGDGGV RE+LKHPSV+ A LV+ID +VIE SKK+LP +A L DPR+
Sbjct: 72 THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV 131
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
V V DGF +++ + ++DVI+ DS++PVGPA +LF ++ +++AL+ GI +Q
Sbjct: 132 DVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191
Query: 174 LWYSLDCVGNTLQHCASVFP 193
W++ + + N + +FP
Sbjct: 192 PWFTPELITNVQRDVKEIFP 211
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 289 bits (743), Expect = e-100
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 9/201 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
V+ Y + FG + LDG++Q TE DEF Y EM+ +PL
Sbjct: 20 QFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLL 79
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPR 112
+H + K VLI+GGGDG + REV +H +VES +VEID V+ ++YLP G DPR
Sbjct: 80 AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPR 139
Query: 113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
+ + DG F+++ Q FDVII+D +DP+GP ESLF ++++E R L PGGI +Q G
Sbjct: 140 FKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199
Query: 173 TLWYSLDCVGNTLQHCASVFP 193
+ + ++ + + F
Sbjct: 200 VCFLQQEEAIDSHRKLSHYFS 220
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural
genomics, PSI, protein structure initiative; 1.50A
{Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Length = 296
Score = 289 bits (742), Expect = e-100
Identities = 78/201 (38%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
V L +++ Y S + G LDGI TE DEF Y EM+A +P+
Sbjct: 27 NVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMF 86
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
HPNPKKVLI+GGGDGG REVLKH SVE A L E+D VIE ++KYL + G DPR
Sbjct: 87 LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA 146
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPV-GPAESLFQASYFELMSRALRPGGIVCSQAG 172
+ + +G ++ + + EFDVII DS+DP G LF +++ AL+ G+ ++
Sbjct: 147 EIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206
Query: 173 TLWYSLDCVGNTLQHCASVFP 193
+Y + + + VFP
Sbjct: 207 DPFYDIGWFKLAYRRISKVFP 227
>1xj5_A Spermidine synthase 1; structural genomics, protein structure
initiative, CESG, AT1G23820, putrescine aminopropyl
transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP:
c.66.1.17 PDB: 2q41_A
Length = 334
Score = 290 bits (745), Expect = 1e-99
Identities = 92/201 (45%), Positives = 134/201 (66%), Gaps = 9/201 (4%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + SL+VE+ + S +G L+LDG+IQ TE DE +Y EMI LPLC
Sbjct: 57 GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 116
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
S PNPKKVL++GGGDGGV REV +H S+E + EID V++VSK++ P +A+G DPR+
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV 176
Query: 114 TVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAG 172
+ +GDG F+ + +D +I DSSDP+GPA+ LF+ +F+ ++RALRPGG+VC+QA
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236
Query: 173 TLWYSLDCVGNTLQHCASVFP 193
+LW +D + + + +C +F
Sbjct: 237 SLWLHMDIIEDIVSNCREIFK 257
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 280 bits (719), Expect = 3e-96
Identities = 83/205 (40%), Positives = 126/205 (61%), Gaps = 13/205 (6%)
Query: 2 GVSLSLQVEEPFYPSSS-----------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFL 50
G ++SL+VE+ Y + + + +GT + LDG IQ T++DEF Y E++
Sbjct: 29 GQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHT 88
Query: 51 PLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD 110
LCSHP P++VLI+GGGDGGV REVL+H +VE LV+ID V+E SK++ P ++ L+D
Sbjct: 89 SLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLAD 148
Query: 111 PRLTVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
PR TV VGDG F+ + +DV+I D++DP GPA LF ++++ + R L+P GI C+
Sbjct: 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208
Query: 170 QAGTLWYSLDCVGNTLQHCASV-FP 193
Q ++W L+ + + F
Sbjct: 209 QGESIWLDLELIEKMSRFIRETGFA 233
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine
synthase, riken STR genomics/proteomics initiative,
RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB:
3anx_A*
Length = 314
Score = 275 bits (706), Expect = 4e-94
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 13/205 (6%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
+L ++E + K FG LILD +Q TE DE+ Y E + +
Sbjct: 14 YETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAML 73
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG-LSDPR 112
+HP PK+VLIVGGG+G REVLKHP+VE A +V+ID ++EV+K+++P G DPR
Sbjct: 74 THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR 133
Query: 113 LTVHVGDGFRFMSEHQQEFDVIITDSSDPVG---PAESLFQASYFELMSRALRPGGIVCS 169
+ + D ++ ++ +DV+I D +DPVG PA L+ ++ L+ L PGG++
Sbjct: 134 AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193
Query: 170 QAGTLWYSLDCVGNTLQH-CASVFP 193
Q G + + V + F
Sbjct: 194 QTGMILLTHHRVHPVVHRTVREAFR 218
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 270 bits (693), Expect = 1e-92
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 16/206 (7%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G ++ ++++ Y S + FG L LDG +Q E SY E + +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMA------VG 107
+HP PK+VL++GGGDGG REVL+H V+ +VEID VI VSK + +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN 130
Query: 108 LSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
+ + +GDGF F+ ++ FDVII DS+DPVGPA+ LF ++ + AL GI
Sbjct: 131 GKHEKAKLTIGDGFEFIKNNRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY 189
Query: 168 CSQAGTLWYSLDCVGNTLQHCASVFP 193
+QAG+++ D + + + VF
Sbjct: 190 VTQAGSVYLFTDELISAYKEMKKVFD 215
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 228 bits (583), Expect = 7e-75
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 25/216 (11%)
Query: 2 GVSLSLQVEEPFYPSSSN--------RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
G + ++E Y S K+FG LIL G + E D +Y+ I
Sbjct: 127 GRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKE 185
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD--- 110
+ K VLI+GGGDGG+ E++K + +VEID VI+ KKY+ + D
Sbjct: 186 DYT-GKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLK 243
Query: 111 -PRLTVHVGDGFRFMSEHQQE---FDVIITD------SSDPVGPAESLFQASYFELMSRA 160
V + D + + +E FD +I D S+ P + F +L +
Sbjct: 244 GDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKV 303
Query: 161 LRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196
L+ G +Q + + + + + ++ +
Sbjct: 304 LKQDGKYFTQGNCVNLT-EALSLYEEQLGRLYCPVE 338
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 222 bits (567), Expect = 9e-74
Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 24/200 (12%)
Query: 2 GVSLSLQVEEPFYPSSS--------NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLC 53
+ +E S K+FG +L+ + SE++A + C
Sbjct: 10 YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLFKN-FLHIESELLAHMGGC 68
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+ K+VLIV G D +A ++ K+ V+ D ++++ + P + +
Sbjct: 69 TKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFFPHF----HEVKN 122
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
+ + + +++D+I + + L R L+ G+ S A
Sbjct: 123 NKNFTHAKQLLDLDIKKYDLIFCLQEPDIHRIDGLK---------RMLKEDGVFISVAKH 173
Query: 174 LWYSLDCVGNTLQHCASVFP 193
+ N L++ VF
Sbjct: 174 PLLEHVSMQNALKNMGGVFS 193
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 130 bits (327), Expect = 4e-37
Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 17/188 (9%)
Query: 21 KEFGTALILDGIIQCT------EFDEFSYSEMIA-----FLPLCSHPNPKKVLIVGGGDG 69
G + ++G+ + EF Y IA F+ + ++ +GGG
Sbjct: 42 TTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGAC 101
Query: 70 GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQ 129
+AR +VE+D + +S+++ PR+ + V D
Sbjct: 102 TMARYFADVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTP 157
Query: 130 E-FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 188
DVII D ++ +FE R L PGG+ + G L + L
Sbjct: 158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD-HSDLRGAKSELAGM 216
Query: 189 ASVFPRLH 196
VF +
Sbjct: 217 MEVFEHVA 224
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 51.8 bits (124), Expect = 1e-08
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP-RLTV 115
N ++V+ +G G G + + +LK E V++ R +E++++ L + + + RL +
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 116 HVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
G + + +D L ++ ++ +P ++ +
Sbjct: 89 IQGA-LTYQDKRFHGYDAATVIEVIEHLDLSRL--GAFERVLFEFAQPKIVIVT 139
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 46.1 bits (109), Expect = 2e-06
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL-PGMAVGLSDPRLTV 115
N KKV+ +G G+G + +LK S E V++ V+E +K L + R+++
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 116 HVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
+ + +D + + + ++ +++ RP ++ S
Sbjct: 89 FQSS-LVYRDKRFSGYDAAT--VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS 139
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 45.8 bits (109), Expect = 2e-06
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 24/99 (24%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPA- 145
V+ D + V + A R+ + G+ + + F ++ DP P
Sbjct: 242 VDKDLEALGVLDQ-----AALRLGLRVDIRHGEALPTLRGLEGPFHHVLL---DP--PTL 291
Query: 146 ----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
E L +L+ A L G + CS
Sbjct: 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 45.1 bits (107), Expect = 5e-06
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 29/172 (16%)
Query: 2 GVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKV 61
L+ Q E F + R F A+ S + L + V
Sbjct: 135 EKPLAFQQESRFAHDTRARDAFNDAM-----------VRLSQPMVDVVSELGVFARARTV 183
Query: 62 LIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
+ + GG G +VL+ HP + + ++ + ++K + A L R+ +
Sbjct: 184 IDLAGGHGTYLAQVLRRHPQLT-GQIWDLPT-TRDAARKTIH--AHDLGG-RVEFFEKNL 238
Query: 121 FRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFELMSRALRPGGIV 167
+ DV++ A + + ++PGG +
Sbjct: 239 LDARNFEGGAADVVMLNDCLHYFDARE--AREVIGHAA-----GLVKPGGAL 283
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 45.1 bits (107), Expect = 5e-06
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLP 102
+++IA L + P KVL + G V + +P+ E + V+ + V+EV+K+
Sbjct: 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAE-IFGVDWAS-VLEVAKENAR 209
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFELM 157
G++ R G F ++ ++D+++ E L +
Sbjct: 210 --IQGVAS-RYHTIAGSAFE--VDYGNDYDLVLLPNFLHHFDVAT--CEQLLRKIK---- 258
Query: 158 SRALRPGGIV 167
AL G V
Sbjct: 259 -TALAVEGKV 267
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 44.7 bits (106), Expect = 6e-06
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 42 SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKY 100
S L + +PK++L +GG G A + ++ + VE +V++ +E+ +K
Sbjct: 164 SDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVE-VTIVDLPQ-QLEMMRKQ 221
Query: 101 LPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFE 155
+ S+ R+ H + FD + S+ S+
Sbjct: 222 TA--GLSGSE-RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEE--EVISILTRVA-- 274
Query: 156 LMSRALRPGGIVC 168
+++ V
Sbjct: 275 ---QSIGKDSKVY 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-06
Identities = 37/212 (17%), Positives = 59/212 (27%), Gaps = 83/212 (39%)
Query: 1 MGVSLSLQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDE----FSYSEMIAFLPLCSHP 56
MG+ L Y +S ++ + + + + FS +++
Sbjct: 1631 MGMDL--------YKTSKAAQD-----VWN---RADNHFKDTYGFSILDIVI-------N 1667
Query: 57 NPKKVLIVGGGDGGVA-RE-----VLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD 110
NP + I GG+ G RE + + +I + E S Y
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------FRS 1721
Query: 111 PR----LTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASY--FELM-SRALRP 163
+ T + Q PA L FE + S+ L P
Sbjct: 1722 EKGLLSAT-----------QFTQ--------------PA--LTLMEKAAFEDLKSKGLIP 1754
Query: 164 GGIVCSQAGTLWYSLDCVG--NTLQHCASVFP 193
AG +SL G L A V
Sbjct: 1755 ADATF--AG---HSL---GEYAALASLADVMS 1778
Score = 30.0 bits (67), Expect = 0.58
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 34 QCTEFDEFSYSE--MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEI-- 89
DE S MIA NP +V + + V++ + +LVEI
Sbjct: 1795 VAVPRDELGRSNYGMIAI-------NPGRVAASFSQE--ALQYVVERVGKRTGWLVEIVN 1845
Query: 90 DN 91
N
Sbjct: 1846 YN 1847
Score = 27.7 bits (61), Expect = 3.5
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 61/163 (37%)
Query: 24 GTALILDGII------QCTEFDEF--SYSEMIAFL-----------PLCSHPNPKKVLI- 63
G G++ + ++ F S + I L P S P P +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDS 327
Query: 64 VGGGDGGVAREVLKHPS----VESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
+ +G PS + + ++ + V + + +LP + ++ + + +
Sbjct: 328 LENNEGV--------PSPMLSISNLTQEQVQDYVNKTNS-HLP------AGKQVEISLVN 372
Query: 120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR 162
G + +++++ GP +SL ++ LR
Sbjct: 373 GAK---------NLVVS------GPPQSL------YGLNLTLR 394
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 44.4 bits (104), Expect = 9e-06
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 4/115 (3%)
Query: 57 NPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
+ ++ G G G + +L + S+++ V+I + + + K L + +
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 116 HVGDG-FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCS 169
+ DG + D+ + + E + P ++ S
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQA--CEFGEKVLSLFHPKLLIVS 833
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 43.7 bits (103), Expect = 1e-05
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 29/143 (20%)
Query: 49 FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
F+ +++ +G G+G + +L V+ + S+ +
Sbjct: 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA 273
Query: 109 SDPRLTVHVGDGFRFMSEHQQEFDVIIT--------DSSDPVGPAESLFQASYFELMSRA 160
D R + + + + F+ ++ +D V A +F + R
Sbjct: 274 LD-RCEFMINNALSGVEPFR--FNAVLCNPPFHQQHALTDNV--AWEMFHHAR-----RC 323
Query: 161 LRPGGIVCSQAGTLWYSLDCVGN 183
L+ G L+ V N
Sbjct: 324 LKIN-------GELY----IVAN 335
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 42.2 bits (100), Expect = 4e-05
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 26/103 (25%)
Query: 87 VEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFM---SEHQQEFDVIITDSSDPV 142
V++ R +S L + V D F + H +D+II DP
Sbjct: 241 VDLAKRSRALSLA---HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII---DP- 293
Query: 143 GPA-----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
P+ + +F S Y +L+ + L G++ +
Sbjct: 294 -PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 41.6 bits (98), Expect = 6e-05
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 30/141 (21%)
Query: 49 FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
L + KVL VG G G ++ +H L ++ +E S+ +
Sbjct: 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-----TLAA 242
Query: 109 SDPRLTVHVGDGFRFMSEHQQEFDVIIT------DSSDPVGPAESLFQASYFELMSRALR 162
+ V + F SE + FD+II+ + A++L + + R L
Sbjct: 243 NGVEGEVFASNVF---SEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAV-----RHLN 294
Query: 163 PGGIVCSQAGTLWYSLDCVGN 183
G G L V N
Sbjct: 295 SG-------GELR----IVAN 304
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 41.2 bits (96), Expect = 7e-05
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 29 LDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE 88
L G+ + D IA LP + L G G G + + +L + L+E
Sbjct: 68 LGGMDHVHDVDIEGSRNFIASLP---GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLE 123
Query: 89 IDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESL 148
++E +K+ L GM VG + +D+I+
Sbjct: 124 PVKHMLEEAKRELAGMPVG------KFILASMETATLP-PNTYDLIV--IQWTAIYLTDA 174
Query: 149 FQASYFELMSRALRPGGIVC 168
+F+ +AL P G +
Sbjct: 175 DFVKFFKHCQQALTPNGYIF 194
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 41.3 bits (96), Expect = 8e-05
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 43 YSEMIAF-LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYL 101
Y E++ L ++ + +GGG + +L H +VEI+ + E+S+K
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK-- 164
Query: 102 PGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRAL 161
+ GL + V GD EFDV++ + P +F+ + R +
Sbjct: 165 --VIEGLGVDGVNVITGDETVI---DGLEFDVLMVAA--LAEPKRRVFRN-----IHRYV 212
Query: 162 RPGGIVC 168
+
Sbjct: 213 DTETRII 219
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 40.5 bits (95), Expect = 1e-04
Identities = 35/133 (26%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVSK 98
EMIA L + + +VL VG G G A + V S V N
Sbjct: 52 EMIALLDV---RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARAT--- 105
Query: 99 KYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLF----QASYF 154
A GL++ R+T D + FD + ESL +
Sbjct: 106 ------AAGLAN-RVTFSYAD-AMDLPFEDASFDAVWA--------LESLHHMPDRGRAL 149
Query: 155 ELMSRALRPGGIV 167
M+R LRPGG V
Sbjct: 150 REMARVLRPGGTV 162
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 39.8 bits (93), Expect = 2e-04
Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
++++ + L + N KVL +G G GG + + + ++I + ++ ++ +
Sbjct: 46 KILSDIEL--NEN-SKVLDIGSGLGGGCMYINEKYGAH-THGIDICSNIVNMANER---- 97
Query: 105 AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-DSSDPVGPAESLFQASYFELMSRALRP 163
V ++ ++ D + FD+I + D+ + + F+ + L+P
Sbjct: 98 -VSGNN-KIIFEAND-ILTKEFPENNFDLIYSRDAILALSLE---NKNKLFQKCYKWLKP 151
Query: 164 GGIV 167
G +
Sbjct: 152 TGTL 155
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 39.4 bits (92), Expect = 3e-04
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 30/135 (22%)
Query: 45 EMIAFLPLCSHPNP-KKVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVS 97
+ + L + K L +G G GG AR +++ V + + +
Sbjct: 69 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-- 126
Query: 98 KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLF----QASY 153
GL+D +TV G F + +D I + ++ +
Sbjct: 127 -------QAGLAD-NITVKYGS-FLEIPCEDNSYDFIWS--------QDAFLHSPDKLKV 169
Query: 154 FELMSRALRPGGIVC 168
F+ +R L+P G++
Sbjct: 170 FQECARVLKPRGVMA 184
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 39.5 bits (92), Expect = 3e-04
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 22/113 (19%)
Query: 60 KVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
++ G G GG + SA + NR + + D +
Sbjct: 120 TLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR---------ELRIDD-HV 169
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
V + + +++ F SR L+ GG
Sbjct: 170 RSRVCN-MLDTPFDKGAVTASW--NNESTMYV---DLHDLFSEHSRFLKVGGR 216
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 39.2 bits (92), Expect = 4e-04
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 26/108 (24%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAV-GLSDPRLTVHVGDGFRFM---SEHQQEFDVIITD 137
V+ ++++++ + + L + D F+ + + ++FDVI+
Sbjct: 244 SQVVSVDTSQEALDIARQ---NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM- 299
Query: 138 SSDPVGPA-----ESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
DP P L A Y ++ A L GGI+ CS
Sbjct: 300 --DP--PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.9 bits (90), Expect = 4e-04
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 30/162 (18%)
Query: 37 EFDEFSYSEMIAFLPLCSHPNPK-KVLIVGGGDGGVAREVL-----KHPSVESAY-LVEI 89
EF ++ + + K+L +GGG G + ++L ++P V +VE
Sbjct: 31 CMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP 90
Query: 90 DNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE-----FDVIITDSS----- 139
I K+ + + L + + H + S ++ +D I
Sbjct: 91 SAEQIAKYKELVAKTS-NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK 149
Query: 140 DPVGPAESLFQASYFELMSRALRPGG---IVCSQAGTLWYSL 178
D + + L I+ + W L
Sbjct: 150 DIP---------ATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 182
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.3 bits (89), Expect = 6e-04
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 45 EMIAFLPLCSHPNP-KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG 103
++ FL C+ N K VL G G + + Y +EI + ++ ++ +
Sbjct: 10 QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLKKAENFSRE 68
Query: 104 MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP 163
+ +L + GD R + + + + + + +A E + R L+P
Sbjct: 69 N-----NFKLNISKGD-IRKLPFKDESMSFVYSYGTIFHMRKNDVKEA-IDE-IKRVLKP 120
Query: 164 GGIVC 168
GG+ C
Sbjct: 121 GGLAC 125
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 37.3 bits (86), Expect = 0.001
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 21/144 (14%)
Query: 36 TEFDEF-SYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVI 94
+D F +S A L P ++L++G G+ ++ E+ + V+ + V+
Sbjct: 21 APYDWFGDFSSFRALLEPELRPE-DRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVV 78
Query: 95 EVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII---------TDSSDPVGPA 145
+ + P+L D R + FDV++ DP +
Sbjct: 79 AAMQACYAHV------PQLRWETMD-VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVS 131
Query: 146 ESLFQ--ASYFELMSRALRPGGIV 167
+SR L PGG
Sbjct: 132 SEGVHTVDQVLSEVSRVLVPGGRF 155
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 37.3 bits (86), Expect = 0.002
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 42 SY-SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKK 99
SY S+ + K ++ VG G G ++ + E ++ +I+ ++
Sbjct: 20 SYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLF---QASYFEL 156
G ++ + F D D + E +
Sbjct: 80 IKEGSPDTY--KNVSFKISSSDDFKFLGADSVD---KQKIDMITAVECAHWFDFEKFQRS 134
Query: 157 MSRALRPGGIVCSQAGTLWYSLDCV 181
LR G + +W D +
Sbjct: 135 AYANLRKDGTIA-----IWGYADPI 154
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 37.2 bits (86), Expect = 0.002
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 23/116 (19%)
Query: 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
KVL G G G + K+ ++I +E +++ + + +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI----KNVKFLQAN 95
Query: 120 GFR--FMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELMSRALRPGGIVC 168
F F FD I P + + + L+PGG +
Sbjct: 96 IFSLPFEDSS---FDHIFVCFVLEHLQSPEE---------ALKSLKKVLKPGGTIT 139
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.1 bits (86), Expect = 0.002
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
Query: 60 KVLIVGGGDGGVAREVLKHPSVE------SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
++L +G G G + + + S+ R E +G+S+ R+
Sbjct: 39 RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE---------ELGVSE-RV 88
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESL-FQASYFELMSRALRPGGIV 167
D +++ + DV VG A EL++++L+PGGI+
Sbjct: 89 HFIHNDAAGYVANEK--CDVAAC-----VGATWIAGGFAGAEELLAQSLKPGGIM 136
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 36.8 bits (85), Expect = 0.002
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 24/134 (17%)
Query: 40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99
+ ++ L + + VL G G G + ++L + Y +E + ++K+
Sbjct: 28 KEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKE 85
Query: 100 YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYF 154
LP ++ GD F E D I++ + D +
Sbjct: 86 KLPK--------EFSITEGDFLSF--EVPTSIDTIVSTYAFHHLTDDE-------KNVAI 128
Query: 155 ELMSRALRPGGIVC 168
S+ L GG +
Sbjct: 129 AKYSQLLNKGGKIV 142
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 37.1 bits (86), Expect = 0.003
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF---RFMSEHQQEFDVIITDS 138
+ ++ R IE +K+ + + R+ VG F + + ++FD+++ D
Sbjct: 241 DEVIGIDKSPRAIETAKE---NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297
Query: 139 SDPVGPAESLFQAS--YFELMSRA---LRPGGIV----CSQA 171
V + L YF + ++ GGI+ CSQ
Sbjct: 298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 36.8 bits (85), Expect = 0.003
Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 13/152 (8%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
+ ++F+ + K+ +G G GG + + + +++ IE+ +
Sbjct: 36 KAVSFIN--ELTDDAKIADIGCGTGGQTLFLADYVKGQ-ITGIDLFPDFIEIFNENAV-- 90
Query: 105 AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPG 164
+D R+ G + +E D+I ++ + ++ S+ L+ G
Sbjct: 91 KANCAD-RVKGITGS-MDNLPFQNEELDLIWSEGA-----IYNIGFERGMNEWSKYLKKG 143
Query: 165 GIVCSQAGTLWYSLDCVGNTLQHCASVFPRLH 196
G + + W++ + +P +
Sbjct: 144 GFIAVSEAS-WFTSERPAEIEDFWMDAYPEIS 174
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 36.3 bits (84), Expect = 0.003
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 23/133 (17%)
Query: 43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP 102
Y + + + +G G G ++ + K ++ + E++ K +
Sbjct: 29 YPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNI- 86
Query: 103 GMAVGLSDPRLTVHVGDGFR--FMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFE 155
L+D R+ + GD + D+I++ S D ++ E
Sbjct: 87 -ADANLND-RIQIVQGDVHNIPIEDNY---ADLIVSRGSVFFWEDV--------ATAFRE 133
Query: 156 LMSRALRPGGIVC 168
+ R L+ GG
Sbjct: 134 -IYRILKSGGKTY 145
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 35.9 bits (83), Expect = 0.003
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
+ +GGG G +A E L+ +A EI E A+ L
Sbjct: 29 LWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS----NAINLGVSDRIAVQQGA 84
Query: 121 FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174
R + DVI +G + F + L GG + + A T+
Sbjct: 85 PRAFDDVPDNPDVIF------IGGGLTA--PGVFAAAWKRLPVGGRLVANAVTV 130
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 36.1 bits (84), Expect = 0.003
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE-FDVIITDSSDPVGPA 145
++ ++ +K G S R+ + MS + + ++ P+
Sbjct: 87 IDPESEHQRQAKALF--REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV-SPMD-- 141
Query: 146 ESLFQASYFELMSRALRPGGIVCSQAGTLW 175
+ + LR GG + A L
Sbjct: 142 ----LKALVDAAWPLLRRGGALVL-ADALL 166
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 35.9 bits (83), Expect = 0.004
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 35/150 (23%)
Query: 38 FDEFS--YSEMIAFLPLCSH-------------PNPKKVLIVGGGDGGVAREVLKHPSVE 82
FD S Y E C +L +G G G ++ +++
Sbjct: 10 FDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEA 69
Query: 83 SAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD-- 140
+ LV++ +++E++K G + ++ D ++ + ++++D+++ S+
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRG------NLKVKYIEADYSKY--DFEEKYDMVV--SALSI 119
Query: 141 ---PVGPAESLFQASYFELMSRALRPGGIV 167
+ L++ SY L+ GI
Sbjct: 120 HHLEDEDKKELYKRSY-----SILKESGIF 144
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 35.8 bits (82), Expect = 0.004
Identities = 28/150 (18%), Positives = 45/150 (30%), Gaps = 14/150 (9%)
Query: 49 FLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL 108
+ L G G G + + +L P +V+I + +K YL
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLL-PLFREVDMVDITEDFLVQAKTYLGE----E 125
Query: 109 SDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV- 167
F E +DVI +G A + +LRP GI+
Sbjct: 126 GKRVRNYFCCGLQDFTPEPDS-YDVIW--IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182
Query: 168 ----CSQAGTLWYSLD-CVGNTLQHCASVF 192
+Q G + +D V L +
Sbjct: 183 IKDNMAQEGVILDDVDSSVCRDLDVVRRII 212
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 35.7 bits (82), Expect = 0.005
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN--RVIEVSKKYLPGMAVGLSDPRL 113
KVL + G GG + + + +V +D +I +++Y + +
Sbjct: 37 KKRGKVLDLACGVGGFSFLLEDY----GFEVVGVDISEDMIRKAREYAKSR-----ESNV 87
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
VGD R +S + FD +I D + E L F+ + R L+P G
Sbjct: 88 EFIVGD-ARKLSFEDKTFDYVI--FIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 35.6 bits (82), Expect = 0.005
Identities = 13/80 (16%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
+++ +G + +K+ + A E+ + + ++K + GL++ ++ V
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS--GLTE-QIDV 76
Query: 116 HVGDGFRFMSEHQQEFDVII 135
G+G + E + D I+
Sbjct: 77 RKGNGLAVI-EKKDAIDTIV 95
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 35.3 bits (81), Expect = 0.005
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDG 120
+ +G G V+ E + +E + + + + +T+
Sbjct: 44 MWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD----NLKKFVARNVTLVEAFA 99
Query: 121 FRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174
+ + + D + S + + + R L+ G++ A TL
Sbjct: 100 PEGLDDL-PDPDRVFIGGSGGMLEE-------IIDAVDRRLKSEGVIVLNAVTL 145
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 35.4 bits (81), Expect = 0.006
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 58 PKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
+ L+ G G G + ++I + + + +
Sbjct: 67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSPKAE---YFSFVK 121
Query: 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGG 165
D F + FD+I E + ++ + M L+P G
Sbjct: 122 EDVFTWRPTEL--FDLIFDYVFFCAIEPE--MRPAWAKSMYELLKPDG 165
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 35.8 bits (82), Expect = 0.006
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118
K + ++G D +L + +++ID R+ + +K A + + +
Sbjct: 174 KDIFVLGDDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEK----AANEIGYEDIEIFTF 228
Query: 119 DGFRFM-SEHQQEFDVIITD 137
D + + +FD ITD
Sbjct: 229 DLRKPLPDYALHKFDTFITD 248
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 35.2 bits (81), Expect = 0.007
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
+L VG + E+++ ++SA E+ + + K + A GL + ++ V
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE--AHGLKE-KIQV 70
Query: 116 HVGDGFRFMSEHQQEFDVII 135
+ +G E + VI
Sbjct: 71 RLANGLAAF-EETDQVSVIT 89
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 35.2 bits (81), Expect = 0.008
Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
+ ++F+ + + +G G GG + H + + ++ + I++ +
Sbjct: 36 KALSFID--NLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFNRNAR-- 90
Query: 105 AVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPG 164
GL + R+T VG + +E D+I ++ + E + L+ G
Sbjct: 91 QSGLQN-RVTGIVGS-MDDLPFRNEELDLIWSEGAIYNIGFERGLNE-----WRKYLKKG 143
Query: 165 GIVCSQAGTLWYSLDCVGNTLQHCASVFPRL 195
G + + W++ + +P +
Sbjct: 144 GYLAVSECS-WFTDERPAEINDFWMDAYPEI 173
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 35.1 bits (80), Expect = 0.009
Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 60 KVLIVGGGDGGVAREVLK--HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
V V G + P V+ ++ D ++ + + G L+ ++T+H
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGH--ALAG-QITLHR 176
Query: 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
D ++ + ++ +D++ ++ + P ++ + +AL+PGG +
Sbjct: 177 QDAWKL--DTREGYDLLTSNGLNIYEPDDARVTE-LYRRFWQALKPGGALV 224
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 35.7 bits (81), Expect = 0.009
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 30/131 (22%)
Query: 67 GDGG---VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL--SDPRLTVHVGDGF 121
G G + + +I+ +E+ L + L S+ T+ D
Sbjct: 331 GSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVC 390
Query: 122 RFMSEHQQEFDVIIT-------------------------DSSDPVGPAESLFQASYFEL 156
E V++ + + +A + EL
Sbjct: 391 SLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLEL 450
Query: 157 MSRALRPGGIV 167
++ ++ G ++
Sbjct: 451 VTELVQDGTVI 461
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 34.8 bits (80), Expect = 0.009
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 61 VLIVGGGDGGVAREV-LKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
+ +GGG G V+ E L +E IE +K + + PR+ G
Sbjct: 59 LWDIGGGSGSVSVEWCLAGGRA---ITIEPRADRIENIQKNIDTYGL---SPRMRAVQGT 112
Query: 120 GFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTL 174
+++ + + + ++ + L PG + + A TL
Sbjct: 113 APAALADLP-LPEAVFIGGGGS---------QALYDRLWEWLAPGTRIVANAVTL 157
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 35.1 bits (81), Expect = 0.011
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 41 FSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKK 99
+ + L KK++ VGGG G ++ +LK P ++ + ++ + I++ +
Sbjct: 174 NAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELD-STILNLPG-AIDLVNE 231
Query: 100 YLPGMAVGLSDPRLTVHVGDGFR 122
G++D R+ D ++
Sbjct: 232 NAA--EKGVAD-RMRGIAVDIYK 251
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 34.9 bits (80), Expect = 0.012
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 47 IAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAV 106
+ HP KVL + G G + L+E + + +
Sbjct: 48 LDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---- 103
Query: 107 GLSDPRLTVHVGDGFRFMS 125
L + D + + +
Sbjct: 104 ---GSPLQILKRDPYDWST 119
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 34.1 bits (78), Expect = 0.015
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 39/139 (28%)
Query: 40 EFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99
E + + ++P ++VL +G G G E+ K +E + V+I+ +I+ +
Sbjct: 26 ELVKARLRRYIPY--FKGCRRVLDIGCGRGEFL-ELCKEEGIE-SIGVDINEDMIKFCEG 81
Query: 100 YLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPAESLFQ-------- 150
+ V D ++ + D ++ +
Sbjct: 82 ------------KFNVVKSDAIEYLKSLPDKYLDGVM------------ISHFVEHLDPE 117
Query: 151 --ASYFELMSRALRPGGIV 167
L ++ +
Sbjct: 118 RLFELLSLCYSKMKYSSYI 136
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.1 bits (78), Expect = 0.017
Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 33/141 (23%)
Query: 38 FDEFSYSEMIAFL--PLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE 95
F + M F+ P +L +G G + +H + VE I
Sbjct: 21 AYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAIS 78
Query: 96 VSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVI--------ITDSSDPVGPAES 147
++ L +T + +D I I D P
Sbjct: 79 HAQGRLK--------DGITYIHSRFEDAQLPRR--YDNIVLTHVLEHIDD------PVAL 122
Query: 148 LFQASYFELMSRALRPGGIVC 168
L + L GG +
Sbjct: 123 L-----KRINDDWLAEGGRLF 138
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 34.3 bits (79), Expect = 0.021
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 64 VGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
+GGG G + VL P + L+E V E +++ L G + R + GD F
Sbjct: 209 IGGGRGSLMAAVLDAFPGL-RGTLLERP-PVAEEARELLTGRGL---ADRCEILPGDFF 262
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 34.2 bits (79), Expect = 0.022
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 64 VGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
VGGG G + + +L+ PS +++ + + V++ L + R+++ GD
Sbjct: 174 VGGGSGELTKAILQAEPSAR-GVMLDRE-GSLGVARDNLSSLLA---GERVSLVGGDML 227
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 33.6 bits (77), Expect = 0.023
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLT 114
P K+L G G G + + K V ++D +I+ +K+ P
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLG---TDLDPILIDYAKQDFPE---------AR 92
Query: 115 VHVGDGFRFMSEHQQEFDVII-TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
VGD + +FD+I+ + + A + RAL G
Sbjct: 93 WVVGD-LSVDQISETDFDLIVSAGNVMGFLAEDGREPA--LANIHRALGADGRAV 144
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 33.6 bits (77), Expect = 0.025
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 48 AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDNRVIEVSKKYLPGMAV 106
L P K L +G G+G + + + Y V+ D +S + +
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-----GYDVDAWD--KNAMSIANVERIKS 75
Query: 107 GLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
+ L V D +++D I++ A+++ M R +PGG
Sbjct: 76 IENLDNLHTRVVDLNNL--TFDRQYDFILSTVVLMFLEAKTI--PGLIANMQRCTKPGGY 131
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 33.5 bits (76), Expect = 0.028
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 39 DEFSYSEMIAFL-PLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEV 96
+E A+L L +VL V G G + +++ SV S V+ +++++
Sbjct: 38 TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTS---VDASDKMLKY 94
Query: 97 SKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFD-VIITDSS-----DPVGPAESL 148
+ K + + + + + FD VI +S D G
Sbjct: 95 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 154
Query: 149 FQASYFELMSRALRPGGI 166
A + ++ +RPGG+
Sbjct: 155 RLA--LKNIASMVRPGGL 170
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 33.2 bits (76), Expect = 0.035
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 38 FDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS 97
+ Y E +A++ L K++ +G G G + H V V++ ++E++
Sbjct: 15 MQDVPYPEWVAWV-LEQVEPGKRIADIGCGTGTATLLLADHYEVTG---VDLSEEMLEIA 70
Query: 98 KKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-DSSDPVGPAESLFQASYFEL 156
++ ++ + V D R + + + I DS + + + Q F+
Sbjct: 71 QEKAME-----TNRHVDFWVQD-MRELELPEPVDAITILCDSLNYLQTEADVKQT--FDS 122
Query: 157 MSRALRPGGIVC 168
+R L GG +
Sbjct: 123 AARLLTDGGKLL 134
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 33.3 bits (76), Expect = 0.036
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 29/139 (20%)
Query: 37 EFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEV 96
+D S S +I F +VL VG GDG ++ + A V+I +I+
Sbjct: 34 MWDSGSRSTIIPFFEQYVKKE-AEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQK 90
Query: 97 SKKYLPGMAVGLSDPRLTVHVGDGFR--FMSEHQQEFDVIITDSS-----DPVGPAESLF 149
K+ G P L+ GD F +E F+ I+ +S +P
Sbjct: 91 GKERGEG-------PDLSFIKGDLSSLPFENEQ---FEAIMAINSLEWTEEP-------- 132
Query: 150 QASYFELMSRALRPGGIVC 168
+ E + R L+ G C
Sbjct: 133 LRALNE-IKRVLKSDGYAC 150
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 33.1 bits (75), Expect = 0.042
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 46 MIAFLPLCSHPNPKKVLIVGGGDGGVAR 73
M+ L L K++L++GGG+ G+ R
Sbjct: 1 MVKSLQLAHQLKDKRILLIGGGEVGLTR 28
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 33.1 bits (76), Expect = 0.044
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 59 KKVLIVGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
+ VL VGGG GG A + + P V A ++E+ ++ ++ YL + R+ V
Sbjct: 185 RHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMA-GTVDTARSYLKDEGL---SDRVDVVE 239
Query: 118 GDGF 121
GD F
Sbjct: 240 GDFF 243
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 33.1 bits (76), Expect = 0.045
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 22/77 (28%)
Query: 112 RLTVHVGDGF---RFMSEHQQEFDVIITDSSDPVGPA-----ESLFQAS--YFELMSRA- 160
+ V + F R + + + FD+++ D PA + + +A Y E+ RA
Sbjct: 258 NVRVLEANAFDLLRRLEKEGERFDLVVLD-----PPAFAKGKKDVERAYRAYKEVNLRAI 312
Query: 161 --LRPGGIV----CSQA 171
L+ GGI+ CS
Sbjct: 313 KLLKEGGILATASCSHH 329
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 32.7 bits (75), Expect = 0.053
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 39 DEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSK 98
+ E + + VL+VGGG +A +K ++ + V+
Sbjct: 12 HSSGHIEGRHMYTVMLDLKGRSVLVVGGGT--IATRRIKG-------FLQEGAAITVVAP 62
Query: 99 KYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
+ + +L V E I+ ++D
Sbjct: 63 TVSAEINEWEAKGQLRVKRKK---VGEEDLLNVFFIVVATNDQ 102
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 32.6 bits (75), Expect = 0.056
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 64 VGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
VGGG GG+ +L H + S ++++ + + + R V VG F
Sbjct: 176 VGGGSGGLLSALLTAHEDL-SGTVLDLQ-GPASAAHRRFLDTGL---SGRAQVVVGSFF 229
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 32.7 bits (75), Expect = 0.057
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 64 VGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
VGGG+GG+ + P + LVE+ E +++ + R+TV GD F
Sbjct: 189 VGGGNGGMLAAIALRAPHLR-GTLVELA-GPAERARRRFADAGL---ADRVTVAEGDFF 242
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 32.5 bits (75), Expect = 0.057
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAE 146
++ D +E +++ L GL D R+ + VGD + + + D++ D D
Sbjct: 87 IDPDRDNVEHARRMLH--DNGLID-RVELQVGDPLGIAAGQR-DIDILFMDC-DVFN--- 138
Query: 147 SLFQASYFELMSRALRPGGIVCSQAGTLW 175
A E M+R L ++ + L
Sbjct: 139 ---GADVLERMNRCLAKNALLIAV-NALR 163
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 32.6 bits (74), Expect = 0.060
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP 102
E + N K VL +G G G +H + +++ R++ +K+
Sbjct: 30 AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRK-- 86
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR 162
+ P + ++ ++V++ SS + S + + L+
Sbjct: 87 -----TTSPVVCYEQKA-IEDIAIEPDAYNVVL--SSLALHYIASFDDI--CKKVYINLK 136
Query: 163 PGGIV 167
G
Sbjct: 137 SSGSF 141
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 32.0 bits (73), Expect = 0.089
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKK--YLPG---MAVGLSDP 111
+KV++VGGG GG A+ + I+ +IE + + G
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADP-------SIEVTLIEPNTDYYTCYLSNEVIGGDRKL 55
Query: 112 RLTVH 116
H
Sbjct: 56 ESIKH 60
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 32.1 bits (73), Expect = 0.10
Identities = 10/78 (12%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 109 SDPRLTVHVGDGFRFMSEHQQE-FDVIITD---------SSDPVGPAESL-FQASYFELM 157
+ ++++GD + +E +++T + E + + S+ +++
Sbjct: 11 TTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVV 70
Query: 158 SRALRPGGIVCSQAGTLW 175
++ L+P G G +
Sbjct: 71 NKKLKPDGSFVVDFGGAY 88
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 30.9 bits (71), Expect = 0.11
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 23/90 (25%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNR----VIEVSKKYLPGMAVGLSDPRLT 114
K+L+VG G +A E+ + Y V + R V ++KY V ++D
Sbjct: 22 NKILLVGNGM--LASEIAPY-FSYPQYKVTVAGRNIDHVRAFAEKY-EYEYVLIND---- 73
Query: 115 VHVGDGFRFMSEHQQEFDVII--TDSSDPV 142
+ + DVII T S P+
Sbjct: 74 ---------IDSLIKNNDVIITATSSKTPI 94
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 31.6 bits (71), Expect = 0.12
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVG 118
VL +G G GG + + + Y V+I I ++ M ++
Sbjct: 66 DSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQ 121
Query: 119 DGFRFMSEHQQEFDVIIT-DSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGTLWYS 177
D + + +EFDVI + S ++R LRPGG +
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLD-IAQRNIARHLRPGGYFIMTVPSRDVI 180
Query: 178 LDCVGN 183
L+
Sbjct: 181 LERYKQ 186
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 31.7 bits (73), Expect = 0.13
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 55 HPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+ ++ VGGG G + + +L+HP ++ Y++E+D ++E K RL
Sbjct: 28 NIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSIGD--------ERL 78
Query: 114 TVHVGD 119
V D
Sbjct: 79 EVINED 84
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 31.3 bits (71), Expect = 0.13
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 48 AFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAV 106
+ + +L VG G G + +E +E R++E++++ P
Sbjct: 32 VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEG---LEPATRLVELARQTHPS--- 85
Query: 107 GLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDP-VGPAESLFQASYFELMSRALRPGG 165
+T H G +S+ + + ++ S +GP E + A+ GG
Sbjct: 86 ------VTFHHGT-ITDLSDSPKRWAGLLAWYSLIHMGPGE---LPDALVALRMAVEDGG 135
Query: 166 IV 167
+
Sbjct: 136 GL 137
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 31.4 bits (71), Expect = 0.14
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 38 FDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDN--RVI 94
+ + + P VL + G G + L + V ++ V+
Sbjct: 63 IQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL-----GWEVTALELSTSVL 117
Query: 95 EVSKKYLPGMAVGLSDPRLTVHVGD--GFRFMSEHQQEFD-VIITDSSDPVGPAESLFQA 151
+K L + D R T+ GD F + F V+I+ S
Sbjct: 118 AAFRKRLAEAPADVRD-RCTLVQGDMSAFAL----DKRFGTVVISSGSINELDEADRRGL 172
Query: 152 SYFELMSRALRPGGIV 167
+ + L PGG
Sbjct: 173 --YASVREHLEPGGKF 186
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 31.2 bits (71), Expect = 0.14
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 23/134 (17%)
Query: 52 LCSHPNPKKVLIVGGGDG----GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVG 107
L KK L +G G +A + P+ E+D + E+ +
Sbjct: 64 LARLIQAKKALDLGTFTGYSALALALAL---PADGRVVTCEVDAQPPELGRPLWRQAEA- 119
Query: 108 LSDPRLTVHVGDGFRFMSE-----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR 162
+ ++ + + + E FDV + D+ D ++Y+E + LR
Sbjct: 120 --EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA-DKEN------CSAYYERCLQLLR 170
Query: 163 PGGIVCSQAGTLWY 176
PGGI+ LW
Sbjct: 171 PGGILAVL-RVLWR 183
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 31.4 bits (71), Expect = 0.16
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 50 LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID 90
+ L N K I+GG V +E L+ ++ Y I+
Sbjct: 150 IVLLGKLNYYKCFILGGSV--VYQEFLEKKLIKKIYFTRIN 188
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 31.0 bits (70), Expect = 0.17
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 24/121 (19%)
Query: 52 LCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP 111
L + VL + G G R + + ++ +I + ++
Sbjct: 41 LRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGL--------D 90
Query: 112 RLTVHVGDGFRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELMSRALRPGGI 166
+ D F + + ++D + D A ++E + A+ PGG+
Sbjct: 91 NVEFRQQDLFDWTPDR--QWDAVFFAHWLAHVPDDRFEA-------FWESVRSAVAPGGV 141
Query: 167 V 167
V
Sbjct: 142 V 142
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.18
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 32/129 (24%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
++ + K+VL +G G + +K +E E +K+ L
Sbjct: 24 NLLKHIK----KEWKEVLDIGCSSGALG-AAIKENGTR-VSGIEAFPEAAEQAKEKL--- 74
Query: 105 AVGLSDPRLTVHVGDGFRF-MSEHQQEFDVII-TDS----SDPVGPAESLFQASYFELMS 158
V +GD M +++FD +I D DP + E +
Sbjct: 75 --------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP---------WAVIEKVK 117
Query: 159 RALRPGGIV 167
++ G++
Sbjct: 118 PYIKQNGVI 126
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 31.1 bits (71), Expect = 0.19
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 53 CSHPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP 111
++ V++ +G G G + E+ K+ + Y++EID + + K
Sbjct: 45 SANLTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKEL------YN 96
Query: 112 RLTVHVGD 119
+ + GD
Sbjct: 97 NIEIIWGD 104
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 30.4 bits (69), Expect = 0.28
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116
PK+VL+ G G +L E +VI ++K L PRL
Sbjct: 4 TPKRVLLAGAT-GLTGEHLLDRILSEPTL-----AKVIAPARKALA------EHPRLDNP 51
Query: 117 VGDGFRFMSEHQQEFDVII 135
VG + + D
Sbjct: 52 VGPLAELLPQLDGSIDTAF 70
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 30.5 bits (69), Expect = 0.34
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 107 GLSDPRLTVHVGDGFRFMSEHQQE---FDVIITDSSDP----VGPAESLFQAS--YFELM 157
GL + D +F+ ++ +D+I+T DP G ++Q ++
Sbjct: 199 GLEQAPIRWICEDAMKFIQREERRGSTYDIILT---DPPKFGRGTHGEVWQLFDHLPLML 255
Query: 158 SRA---LRPGGI 166
L P +
Sbjct: 256 DICREILSPKAL 267
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 30.2 bits (68), Expect = 0.35
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 58 PKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116
K+L + G+G A + V + V+ + + +K+ V ++T
Sbjct: 30 QGKILCLAEGEGRNACFLASLGYEVTA---VDQSSVGLAKAKQLAQEKGV-----KITTV 81
Query: 117 VGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
+ F ++ I+ + + + + + + L+PGG+
Sbjct: 82 QSNLADF-DIVADAWEGIV-SIFCHLPSSL---RQQLYPKVYQGLKPGGV 126
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 30.2 bits (69), Expect = 0.35
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 22/96 (22%)
Query: 52 LCSHPNP-KKVLIVGGGDG----------GVAREVLKHPSVESAYLVEIDNRVIEVSKKY 100
L + K L VG G G G +V ++ +++ S
Sbjct: 71 LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKV---------IGIDHIKELVDDSVNN 121
Query: 101 LP-GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135
+ LS R+ + VGDG +E +D I
Sbjct: 122 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAP-YDAIH 156
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 30.3 bits (68), Expect = 0.36
Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 22/119 (18%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYL-VEIDNRVIEVSKKYLPGMAVGLSDPRLT 114
P ++ G G G + ++ S Y ++ ++ +++ +
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSE 75
Query: 115 VHVGDGFRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELMSRALRPGGIVC 168
GD E ++D+ I + P + + M +++ GG +
Sbjct: 76 FLEGDATEI--ELNDKYDIAICHAFLLHMTTP--------ETMLQK-MIHSVKKGGKII 123
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 30.3 bits (69), Expect = 0.38
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKY---LPGMAVGLSDPRLTV 115
K VL+VG G+ + + V K V + NR E + + L G AV +
Sbjct: 168 KTVLVVGAGE--MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDE----- 220
Query: 116 HVGDGFRFMSEHQQEFDVII--TDSSDPV 142
+ +H DV++ T + PV
Sbjct: 221 --------LVDHLARSDVVVSATAAPHPV 241
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 30.3 bits (69), Expect = 0.38
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 54 SHPNPKKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD- 110
++++IVGGG+ G +A+ + + SV ++IE + + A LS+
Sbjct: 231 LEKPYRRIMIVGGGNIGASLAKRLEQTYSV----------KLIERNLQR----AEKLSEE 276
Query: 111 -PRLTVHVGDGFR---FMSEHQQEFDVIIT 136
V GD E+ + DV I
Sbjct: 277 LENTIVFCGDAADQELLTEENIDQVDVFIA 306
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 30.1 bits (68), Expect = 0.40
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKK--YLPGM---AVGLSDP 111
KVL++GG G A + + + ++ +VI S+ + P + A+G+ D
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSK----ADV--KVINKSRFSYFRPALPHVAIGVRDV 55
Query: 112 RLTV 115
Sbjct: 56 DELK 59
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 30.0 bits (67), Expect = 0.44
Identities = 16/140 (11%), Positives = 39/140 (27%), Gaps = 25/140 (17%)
Query: 38 FDEFSYSEMIAFLP-LCSHPNP-KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIE 95
+D ++ LP NP ++ G+G + + + +++ +E
Sbjct: 35 WDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF--FPRVIGLDVSKSALE 92
Query: 96 VSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE---HQQEFDVIITDSS-----DPVGPAES 147
++ K ++ + DG H + D I +
Sbjct: 93 IAAKENTA-------ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRE-- 143
Query: 148 LFQASYFELMSRALRPGGIV 167
+ + L G +
Sbjct: 144 ----LLGQSLRILLGKQGAM 159
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.2 bits (68), Expect = 0.45
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 38 FDEFSYSEM--IAFLPLCSHPNPKKVLIVGGG 67
F E Y E IA L + NPK V+IVG G
Sbjct: 11 FQENDYEEFLEIARNGLKATSNPKHVVIVGAG 42
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 29.9 bits (67), Expect = 0.46
Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 25/132 (18%)
Query: 38 FDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVS 97
+ ++A L VL +G G+G + +D VS
Sbjct: 66 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA--LPEITTFGLD-----VS 118
Query: 98 KKYLPGMAVGLSDPRLTVHVGDGFR--FMSEHQQEFDVIITDSSDPVGPAESLFQASYFE 155
K + A P++T V R F D II ++ E
Sbjct: 119 KVAI-KAAAKR-YPQVTFCVASSHRLPFSD---TSMDAII-----------RIYAPCKAE 162
Query: 156 LMSRALRPGGIV 167
++R ++PGG V
Sbjct: 163 ELARVVKPGGWV 174
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 29.6 bits (66), Expect = 0.50
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 20/110 (18%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
+VL G G G A + ++++++ P V + + +
Sbjct: 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGEL 104
Query: 116 HVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGG 165
G G F +I++ P S + P
Sbjct: 105 PAGLG--------APFGLIVS-RRGPT---------SVILRLPELAAPDA 136
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium
tuberculosis} SCOP: b.45.1.1
Length = 137
Score = 29.1 bits (65), Expect = 0.59
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 110 DPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRP 163
+ DG R++ E + D V AE + Y R
Sbjct: 68 SGLAVLSQVDGARWL---SLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRV 118
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 29.4 bits (67), Expect = 0.61
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 53 CSHPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDP 111
N + +G G G E+++ +EID+++ + ++ L
Sbjct: 25 NIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HD 76
Query: 112 RLTVHVGD 119
V D
Sbjct: 77 NFQVLNKD 84
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 29.5 bits (67), Expect = 0.63
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 52 LCSHPNP-KKVLIVGGGDG-------GVAREVLKHPSVESAYLVEIDNRVIEVSKKYL-P 102
L H P ++L VG G G + +E ++ SK L
Sbjct: 78 LRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNT 136
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII 135
L +L + GDG + + ++ I
Sbjct: 137 DDRSMLDSGQLLIVEGDGRKGYPPNAP-YNAIH 168
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.4 bits (66), Expect = 0.71
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 18/127 (14%)
Query: 46 MIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDN--RVIEVSKKYLP 102
+ + ++VL + G G E+ + Y V +D ++ V+++
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAER-----GYEVVGLDLHEEMLRVARRKAK 84
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFD-VIITDSSDPVGPAESLFQASYFELMSRAL 161
+ ++ GD + EFD V + S+ E L + F ++ AL
Sbjct: 85 E-----RNLKIEFLQGDVLEI--AFKNEFDAVTMFFSTIMYFDEEDLRKL--FSKVAEAL 135
Query: 162 RPGGIVC 168
+PGG+
Sbjct: 136 KPGGVFI 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.71
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 9/35 (25%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116
E L ++ + K Y A P L +
Sbjct: 18 EKQALKKLQASL----KLYADDSA-----PALAIK 43
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 29.1 bits (66), Expect = 0.72
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 55 HPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+ + +G G G + ++ K + +E+D+ + +S + L + R+
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL------NTRV 77
Query: 114 TVHVGD 119
T+ D
Sbjct: 78 TLIHQD 83
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 29.4 bits (67), Expect = 0.78
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 84 AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143
LV + R + V+ P + + RL V + + + + P
Sbjct: 302 KKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKV-SKKTGALDFFKSLNAGELKKAAPAD 360
Query: 144 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176
P+ L A + L P V ++ G W+
Sbjct: 361 PSAPLVNAEIARQVEALLTPNTTVIAETGDSWF 393
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 29.3 bits (66), Expect = 0.86
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 59 KKVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKK----YLPGM---AVGLS 109
K V+++GGG GG A + D ++ +S + + P A+G
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMP---------DLKITLISDRPYFGFTPAFPHLAMGWR 53
Query: 110 DP 111
Sbjct: 54 KF 55
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 29.1 bits (65), Expect = 0.86
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 23/144 (15%)
Query: 30 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE- 88
D + Q D + +A L P +L V G G R + VE
Sbjct: 23 DLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADS-----FGTVEG 77
Query: 89 IDN--RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII--TDSSDPVGP 144
++ ++ ++++ +P +H GD R S ++ F + S +
Sbjct: 78 LELSADMLAIARR---------RNPDAVLHHGD-MRDFSLGRR-FSAVTCMFSSIGHLAG 126
Query: 145 AESLFQASYFELMSRALRPGGIVC 168
L A E + + P G+V
Sbjct: 127 QAELDAA--LERFAAHVLPDGVVV 148
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 29.0 bits (65), Expect = 0.87
Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 34/138 (24%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN--RVIEVSKKYLP 102
+++ L + +L +G G G + ++ + A ++ DN +IE +++ P
Sbjct: 48 DLLQLLNP---QPGEFILDLGCGTGQLTEKIAQS----GAEVLGTDNAATMIEKARQNYP 100
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELM 157
L V D F + D + +++ +P +
Sbjct: 101 ---------HLHFDVADARNF--RVDKPLDAVFSNAMLHWVKEPEAA---------IASI 140
Query: 158 SRALRPGGIVCSQAGTLW 175
+AL+ GG ++ G
Sbjct: 141 HQALKSGGRFVAEFGGKG 158
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 28.8 bits (65), Expect = 0.88
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE-HQQEFDVIITDSSDPVGPA 145
+E + +I+ +K+ L + ++ + G+ + + +D+I D+
Sbjct: 101 IERNETMIQYAKQNL--ATYHFEN-QVRIIEGNALEQFENVNDKVYDMIFIDA-AKAQ-- 154
Query: 146 ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 187
+FE+ + L+ G+V + D N L H
Sbjct: 155 ----SKKFFEIYTPLLKHQGLVIT---------D---NVLYH 180
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.0 bits (64), Expect = 0.89
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 23/144 (15%)
Query: 37 EFDEFSYSEMIAFLPLCSHPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIE 95
E ++MI + + + + +G G G V +V + + Y VE + +
Sbjct: 156 ETSFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK 211
Query: 96 VSKKYLPGMA-----VGLSDPRLTVHVGDGFRF-MSEHQQEFDVIITDSSDPVGPAESLF 149
++ G T+ GD E VI ++ F
Sbjct: 212 YAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--------FAF 263
Query: 150 QASYFELMS---RALRPGG-IVCS 169
+ ++ GG IV S
Sbjct: 264 GPEVDHQLKERFANMKEGGRIVSS 287
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 28.8 bits (65), Expect = 0.90
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 57 NPKKVLIVGGGDG----GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR 112
KKVL +G G ++ + P +I+ + + Y +
Sbjct: 60 RAKKVLELGTFTGYSALAMSLAL---PDDGQVITCDINEGWTKHAHPYW--REAKQEH-K 113
Query: 113 LTVHVGDGFRFMSE-----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
+ + +G + + +FD I D+ D +Y+EL + + P G++
Sbjct: 114 IKLRLGPALDTLHSLLNEGGEHQFDFIFIDA-DKTN------YLNYYELALKLVTPKGLI 166
Query: 168 CSQAGTLWY 176
W
Sbjct: 167 AIDN-IFWD 174
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.9 bits (65), Expect = 0.99
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 57 NPKKVLIVGGGDGG--VAREVLKH 78
V+I+G G GG A E+ +
Sbjct: 3 GSAHVVILGAGTGGMPAAYEMKEA 26
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 28.7 bits (65), Expect = 1.0
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 55 HPNPKKVLI-VGGGDGGVAREVLKHPSVESAYL--VEIDNRVIEVSKKYLPGMAVGLSDP 111
P + ++ +G G G + V+ + + L VE+D +I ++
Sbjct: 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGE-------- 90
Query: 112 RLTVHVGD 119
L +H GD
Sbjct: 91 LLELHAGD 98
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 28.6 bits (64), Expect = 1.1
Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 23/144 (15%)
Query: 30 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE- 88
D D + + IA L P +L V G G K
Sbjct: 13 DLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKE-----FGDTAG 67
Query: 89 IDN--RVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVII--TDSSDPVGP 144
++ ++ ++K L P T+H GD F ++F ++ S +
Sbjct: 68 LELSEDMLTHARKRL---------PDATLHQGDMRDF--RLGRKFSAVVSMFSSVGYLKT 116
Query: 145 AESLFQASYFELMSRALRPGGIVC 168
E L A + L PGG+V
Sbjct: 117 TEELGAA--VASFAEHLEPGGVVV 138
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 28.8 bits (63), Expect = 1.2
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKK 99
+ VL +G G + + ++ID+R+I +++
Sbjct: 48 RDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 28.6 bits (64), Expect = 1.2
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 27/131 (20%)
Query: 45 EMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM 104
++ + + + ++VL V G G VA V+ ++ +++V++ ++ G
Sbjct: 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGN 82
Query: 105 AVGLSDPRLTVHVGDGFR--FMSEHQQEFDVIITDSS-----DPVGP-AESLFQASYFEL 156
++ GD + F E F ++ + +P +E
Sbjct: 83 GH----QQVEYVQGDAEQMPFTDER---FHIVTCRIAAHHFPNPASFVSE---------- 125
Query: 157 MSRALRPGGIV 167
R L+ GG +
Sbjct: 126 AYRVLKKGGQL 136
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 28.6 bits (64), Expect = 1.2
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 43 YSEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLP 102
+E A + +++ +G G G R +H +++ +++ ++ P
Sbjct: 29 AAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGP 87
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR 162
D +T D + + Q FD+ SS + E + + F + +AL
Sbjct: 88 -------DTGITYERADLDK-LHLPQDSFDLAY--SSLALHYVEDVARL--FRTVHQALS 135
Query: 163 PGGIVC 168
PGG
Sbjct: 136 PGGHFV 141
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax,
pyrimethamine, malaria, drug resistance, oxidoreductase;
HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A*
2blc_A* 2bla_A*
Length = 238
Score = 28.3 bits (63), Expect = 1.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 50 LPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID 90
L L K I+GG V RE L ++ Y I+
Sbjct: 159 LLLLKKLKYYKCFIIGGAQ--VYRECLSRNLIKQIYFTRIN 197
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.2 bits (63), Expect = 1.4
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 25/119 (21%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEID--NRVIEVSKKYLPGMAVGLSDPRL 113
L +G G ++ H L ID R I + + +
Sbjct: 50 GAVSNGLEIGCAAGAFTEKLAPH----CKRLTVIDVMPRAIGRACQRTKR------WSHI 99
Query: 114 TVHVGDGFRFMSEHQQEFDVIITDS-----SDPVGPAESLFQASYFELMSRALRPGGIV 167
+ D +F + FD+I+ D + A + M + L PGG +
Sbjct: 100 SWAATDILQFSTAEL--FDLIVVAEVLYYLEDM----TQMRTA--IDNMVKMLAPGGHL 150
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.4 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 64 VGGGDGGVAREVLK-HPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF 121
VGGG GG VL+ HP ++ L++ V+ + P +A R V GD
Sbjct: 191 VGGGRGGFLLTVLREHPGLQ-GVLLDRA-EVVARHRLDAPDVA-----GRWKVVEGDFL 242
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 28.3 bits (63), Expect = 1.4
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKH-PSVESAYLVEIDNRVIEVSKKYLP 102
+ + FL P K+L +G G G A +L V++ + + + + L
Sbjct: 32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDA---TDGSPELAAEASRRLG 86
Query: 103 GMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALR 162
V + + +D + + P + L A +L+ RAL+
Sbjct: 87 ----------RPVRTMLFHQL--DAIDAYDAVWAHACLLHVPRDEL--ADVLKLIWRALK 132
Query: 163 PGGI 166
PGG+
Sbjct: 133 PGGL 136
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 28.4 bits (64), Expect = 1.4
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 36/109 (33%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVIITDSSDPVGP 144
+E D R E + K++ A+GL R+ + GD + + FDV+ D
Sbjct: 84 IERDERRYEEAHKHVK--ALGLES-RIELLFGDALQLGEKLELYPLFDVLFID------- 133
Query: 145 AESLFQA------SYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 187
A +F++ S +RPGG++ S D N L
Sbjct: 134 ------AAKGQYRRFFDMYSPMVRPGGLILS---------D---NVLFR 164
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.3 bits (63), Expect = 1.5
Identities = 24/133 (18%), Positives = 39/133 (29%), Gaps = 41/133 (30%)
Query: 48 AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVI--EVSKKYLPGM- 104
A + L + P + +G G GG + L V E S M
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVA-----------LANQGLFVYAVEPS----IVMR 69
Query: 105 AVGLSDPRLTVHVGDG----FRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFE 155
+ P++ G + D +I+ + + S+ E
Sbjct: 70 QQAVVHPQVEWFTGYAENLALP-----DKSVDGVISILAIHHFSHL--------EKSFQE 116
Query: 156 LMSRALRPGGIVC 168
M R +R G IV
Sbjct: 117 -MQRIIRDGTIVL 128
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 28.2 bits (62), Expect = 1.5
Identities = 16/141 (11%), Positives = 33/141 (23%), Gaps = 12/141 (8%)
Query: 38 FDEFSYSEMI---AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVI 94
+ + +I N +KVL + G+G + + + D I
Sbjct: 26 LSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAI 84
Query: 95 EVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEF-DVIITDSSDPV-------GPAE 146
+ + G+ +V + +
Sbjct: 85 ARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFH 144
Query: 147 SLFQASYFELMSRALRPGGIV 167
A+ +S GG V
Sbjct: 145 PRHYATVMNNLSELTASGGKV 165
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 27.6 bits (62), Expect = 1.6
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
E AY V + + EV + G+ + G +E Q II D S
Sbjct: 70 EEAYGVYESSYLQEVPRDQFEGI---------ELEKGMSVFGQTEDNQTIQAIIKDFSA 119
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 10/43 (23%)
Query: 124 MSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
EH D + G ++F+ G
Sbjct: 146 AFEH-------FADGAGDAGFE---RYDTFFKKFYNLTPDDGR 178
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 28.3 bits (64), Expect = 1.7
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 54 SHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
+ P V VG G G + R +L+ +E D R+ V + LS +
Sbjct: 43 ARPFTGPVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPV-------LEETLSGLPV 93
Query: 114 TVHVGD 119
+ D
Sbjct: 94 RLVFQD 99
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 28.2 bits (63), Expect = 1.7
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 30/128 (23%)
Query: 48 AFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDN--RVIEVSKKYLPGMA 105
A L P++VL +G G+G + R + V +D +++ ++ G
Sbjct: 43 AILLAILGRQPERVLDLGCGEGWLLRALADR----GIEAVGVDGDRTLVDAARAAGAG-- 96
Query: 106 VGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSS------DPVGPAESLFQASYFELMSR 159
+++D+I ++ D L A M
Sbjct: 97 -----EVHLASYAQLAEAKVPVGKDYDLIC--ANFALLHQDI----IELLSA-----MRT 140
Query: 160 ALRPGGIV 167
L PGG +
Sbjct: 141 LLVPGGAL 148
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 28.1 bits (62), Expect = 1.9
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 60 KVLIVGGGDGG----VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSD----P 111
VL +G G G ++ V +H V V++ + +EV++KY+ A
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGKV---IGVDMLDNQLEVARKYVEYHAEKFFGSPSRS 142
Query: 112 RLTVHVGDGFRFMSEHQQE-----FDVIITDSSDPVGPAESLFQASYFELMSRALRPGGI 166
+ G + + D++I S+ + + F+ + R LR GG
Sbjct: 143 NVRFLKGFIENLATAEPEGVPDSSVDIVI--SNCVCNLSTNKLAL--FKEIHRVLRDGGE 198
Query: 167 V 167
+
Sbjct: 199 L 199
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 50 LPLCSHPNPKKVLIVGGGDGGVA 72
+P+ K + +VG G G+A
Sbjct: 365 MPILPAVQKKNLAVVGAGPAGLA 387
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 27.7 bits (62), Expect = 2.0
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
++A+ V + + S++ +G F + E +I + +
Sbjct: 88 DAAFGVPSPDLIQYFSRREFMDA--------GEPEIGAIMLFTAMDGSEMPGVIREING 138
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 28.2 bits (62), Expect = 2.0
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 24/107 (22%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGL-SDPRLTVHV 117
+ +G GG +++K + ++ +DN P MA L ++T
Sbjct: 213 MWAVDLGACPGGWTYQLVKR----NMWVYSVDN---------GP-MAQSLMDTGQVTWLR 258
Query: 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPG 164
DGF+F ++ D + A LM++ L G
Sbjct: 259 EDGFKFRPTRSN-ISWMVCDMVEK--------PAKVAALMAQWLVNG 296
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 27.5 bits (60), Expect = 2.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 85 YLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQE----------FDVI 134
+ + V V K P A+ +L G+ R E+ ++ FD+I
Sbjct: 8 FGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDII 67
Query: 135 ITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
+ S V + +L A ++R LRPGG +
Sbjct: 68 L---SGLVPGSTTLHSAEILAEIARILRPGGCL 97
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 27.9 bits (62), Expect = 2.1
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 26/129 (20%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGM-AVGLSDPRLT 114
NP +VL +GGG G + + + +V +D S M V
Sbjct: 53 KNPCRVLDLGGGTGKWSLFLQE----RGFEVVLVDP-----S----KEMLEVAREKGVKN 99
Query: 115 VHVGDGFRFMSEHQQEFDVIITDSSDPVGPA----ESLFQASYFELMSRALRPGGIVCSQ 170
V + F+ ++ +G E+ +A F + R L P G++ +
Sbjct: 100 VVEAKA-EDLPFPSGAFEAVLA-----LGDVLSYVENKDKA--FSEIRRVLVPDGLLIAT 151
Query: 171 AGTLWYSLD 179
+ L
Sbjct: 152 VDNFYTFLQ 160
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 28.3 bits (62), Expect = 2.2
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 112 RLTVHVGD---GFRFMSEHQQ-EFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
L + GD + + + D D P ++ F M+R RPGG
Sbjct: 149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-AKNPDMWNEQLFNAMARMTRPGGTF 207
Query: 168 CS--QAGTLWYSLDCVG 182
+ AG + L G
Sbjct: 208 STFTAAGFVRRGLQQAG 224
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 28.0 bits (61), Expect = 2.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 19 NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIVGGGDGGVA 72
++ L+L G E + Y +++ L PK++LIVG G G+
Sbjct: 5 TYEQLARELLLVGPAPTNEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIAGLV 58
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.00A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A
2a71_A
Length = 222
Score = 27.6 bits (61), Expect = 2.4
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD--VIITDSSDPVGP 144
+E R + S + G++ + +D ++ D++ P+GP
Sbjct: 65 MEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLY----NGPVNYDGLQLLVDNNGPLGP 120
Query: 145 AESLF 149
Sbjct: 121 TLRGQ 125
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.7 bits (62), Expect = 2.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 56 PNPKKVLIVGGGDGGVA 72
P ++ +VGG G+
Sbjct: 3 PTTDRIAVVGGSISGLT 19
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.1 bits (63), Expect = 2.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 56 PNPKKVLIVGGGDGG 70
N VLIVG G G
Sbjct: 387 KNKDSVLIVGAGPSG 401
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.6 bits (61), Expect = 2.5
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 57 NPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116
+VLIVGG G + + ++ S+ + + R VS M + +
Sbjct: 3 KKSRVLIVGGT-GYIGKRIVNA-SISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 117 VGD 119
Sbjct: 61 EAS 63
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.0 bits (63), Expect = 2.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 56 PNPKKVLIVGGGDGG 70
+ +VL+VG G G
Sbjct: 389 ESDARVLVVGAGPSG 403
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 27.9 bits (63), Expect = 2.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 144 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176
P SL Q +++ + +RPG I+ + GT +
Sbjct: 356 PDGSLTQENFWRTLQTFIRPGDIILADQGTSAF 388
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 27.9 bits (61), Expect = 2.6
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 25/146 (17%)
Query: 37 EFDEFSYSEMIAFLPLCSHPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIE 95
E S++ L + +G G G + ++ EI + +
Sbjct: 225 ELLPNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASD 280
Query: 96 VSKKYLPGMA-----VGLSDPRLTVHVGDGFR---FMSEHQQEFDVIITDSSDPVGPAES 147
++ + G+ + + F ++E + DVI+ ++
Sbjct: 281 LTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--------F 332
Query: 148 LFQAS---YFELMSRALRPGG-IVCS 169
LF E + + + G I+
Sbjct: 333 LFDEDLNKKVEKILQTAKVGCKIISL 358
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 27.4 bits (61), Expect = 2.8
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 27/116 (23%)
Query: 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
+VL +G G G A + V+ V+ ++EV+ + V + G
Sbjct: 24 RVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV----ENVRFQQGT 77
Query: 120 GFR--FMSEHQQEFDVIITD-----SSDPVGP-AESLFQASYFELMSRALRPGGIV 167
F + FD+I SD E ++R L+ G
Sbjct: 78 AESLPFPDDS---FDIITCRYAAHHFSDVRKAVRE----------VARVLKQDGRF 120
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 27.9 bits (63), Expect = 2.8
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 84 AYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVG 143
+VE + +++ PG+ + +L + D ++ T ++ V
Sbjct: 304 KNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIAD---AAKGYKPVAVPARTPANAAVP 360
Query: 144 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176
+ L Q + + L+ G +V ++ GT +
Sbjct: 361 ASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAF 393
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 27.2 bits (60), Expect = 2.9
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 19/120 (15%)
Query: 60 KVLIVGGGDGGV----AREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
V+ G+G A V ++ V + +I ++ I + K L + L D R+T+
Sbjct: 25 TVVDATCGNGNDTAFLASLVGENGRV---FGFDIQDKAIANTTKKL--TDLNLID-RVTL 78
Query: 116 HVGDGFRFMSEHQQEFDVII-------TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
++ + E+ QA L GGI+
Sbjct: 79 IKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQA--LSKAMELLVTGGIIT 136
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 27.3 bits (61), Expect = 2.9
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSE--HQQEFDVIITDSSDPVGP 144
+E D +V+++ L G+ R+T+ G + + FD+I D+ D
Sbjct: 94 LEADAHHAQVARENLQ--LAGVDQ-RVTLREGPALQSLESLGECPAFDLIFIDA-DKPN- 148
Query: 145 AESLFQASYFELMSRALRPGGIVCSQAGTLW 175
Y R RPG ++ +
Sbjct: 149 -----NPHYLRWALRYSRPGTLIIGD-NVVR 173
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 26.8 bits (60), Expect = 3.1
Identities = 9/59 (15%), Positives = 11/59 (18%), Gaps = 8/59 (13%)
Query: 82 ESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSD 140
E AY V V P V G F + +
Sbjct: 60 EKAYGPHDPEGVQVVPLSAFPED--------AEVVPGAQFYAQDMEGNPMPLTVVAVEG 110
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 3.2
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 94 IEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMS--EHQQEFD 132
+ + Y + D V R +S E
Sbjct: 118 MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQ 158
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 27.4 bits (61), Expect = 3.3
Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 55 HPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVE-IDN--RVIEVSKKYLPGMAVGLSDP 111
+ L + G G + + +D ++ ++
Sbjct: 35 NLVFDDYLDLACGTGNLTENLCPK-----FKNTWAVDLSQEMLSEAENKFRS-----QGL 84
Query: 112 RLTVHVGDGFRFMSEHQQEFDVII--TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
+ + D ++FD+I DS++ + ++ L + F+ +S L+ GG+
Sbjct: 85 KPRLACQDISNL--NINRKFDLITCCLDSTNYIIDSDDLKKY--FKAVSNHLKEGGVFI 139
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 27.2 bits (61), Expect = 3.3
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGF----RFMSEHQQEFDVIITDSSDPV 142
+E + ++++ + L+D R+ V G + +E + FD I D+ D
Sbjct: 89 LEASEKHADIARSNIE--RANLND-RVEVRTGLALDSLQQIENEKYEPFDFIFIDA-DKQ 144
Query: 143 GPAESLFQASYFELMSRALRPGGIVC 168
+YFE + RPG ++
Sbjct: 145 N------NPAYFEWALKLSRPGTVII 164
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.42A
{Saccharomyces cerevisiae} SCOP: b.29.1.13
Length = 256
Score = 27.3 bits (60), Expect = 3.3
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFD--VIITDSSDPVGP 144
+E R + S + G++ + +D ++ D++ P+GP
Sbjct: 72 MEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLY----NGPVNYDGLQLLVDNNGPLGP 127
Query: 145 AESLF 149
Sbjct: 128 TLRGQ 132
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.4 bits (61), Expect = 3.3
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 58 PKKVLIVGGG-DGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVH 116
+KVL+VG G G + + + +E + V +
Sbjct: 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE--------PTEVEQTVIEETKTNYYN 232
Query: 117 VGDGFRFMSEHQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
+G+ + + +FDVII D G ++ L G++
Sbjct: 233 SSNGYDKLKDSVGKFDVII----DATGADVNILGNVI-----PLLGRNGVLG 275
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 27.5 bits (60), Expect = 3.3
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 61 VLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVI--EVSKKYLPGMAVGLSDPRLTVHVG 118
++ G DG + + L + R I V K L G+ + + +
Sbjct: 874 IVTDGRFDGAGVYAPDGTRTSAVSLLAVPEARQIVTRVPKAALGGLDPATARMSVAMFGN 933
Query: 119 --DGF 121
G
Sbjct: 934 AESGE 938
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 27.1 bits (61), Expect = 3.4
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 55 HPNPKKVLI-VGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRL 113
HP L+ +G G G + +L ++ LVEID ++ +K +
Sbjct: 26 HPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQ------KNI 77
Query: 114 TVHVGD 119
T++ D
Sbjct: 78 TIYQND 83
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 27.3 bits (60), Expect = 3.6
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 34/127 (26%)
Query: 60 KVLIVGGGDGGVAREVLKHPSVESAYLVEID--------NRVIEVSKKYLPGMAVGLSDP 111
K+L +G G G ++ + S ++ ID + + +L +G
Sbjct: 46 KILEIGCGQGDLSAVLADQVG-SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG---D 101
Query: 112 RLTVHVGDG-----FRFMSEHQQEFDVIITDSS-----DPVGPAESLFQASYFELMSRAL 161
RLTVH +H FD ++ S + L
Sbjct: 102 RLTVHFNTNLSDDLGPIADQH---FDRVVLAHSLWYFASA---------NALALLFKNMA 149
Query: 162 RPGGIVC 168
V
Sbjct: 150 AVCDHVD 156
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 27.2 bits (60), Expect = 3.7
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 28/118 (23%)
Query: 56 PNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTV 115
L +G G G +A + ++ D ++EV ++ + G+ D ++ V
Sbjct: 38 GEEPVFLELGVGTGRIALPL--IARGYRYIALDADAAMLEVFRQKIAGV-----DRKVQV 90
Query: 116 HVGDGFR--FMSEHQQEFDVIITDSS-----DPVGP-AESLFQASYFELMSRALRPGG 165
D E +I D AE R L+PGG
Sbjct: 91 VQADARAIPLPDES---VHGVIVVHLWHLVPDWPKVLAE----------AIRVLKPGG 135
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 27.3 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 107 GLSDPRLTVHVGDGFRFMSEHQQEFDVIITD------SSDPVGPAESLF--QASYFELMS 158
GL+ + D ++ E ++FD+I D S E F Q + LM
Sbjct: 586 GLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR----MEDAFDVQRDHLALMK 641
Query: 159 RA---LRPGGIV 167
LR GG +
Sbjct: 642 DLKRLLRAGGTI 653
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 26.9 bits (60), Expect = 3.8
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 57 NPKKVLIVGGGDG----GVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPR 112
K+VL +G G +A ++ P + D ++KKY G+++ +
Sbjct: 72 GAKQVLEIGVFRGYSALAMALQL---PPDGQIIACDQDPNATAIAKKYWQ--KAGVAE-K 125
Query: 113 LTVHVGDGFRFMSE-----HQQEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIV 167
+++ +G + + EFD+I D+ D Y+E+ LR GG++
Sbjct: 126 ISLRLGPALATLEQLTQGKPLPEFDLIFIDA-DKRN------YPRYYEIGLNLLRRGGLM 178
Query: 168 CSQAGTLWY 176
LW+
Sbjct: 179 VI-DNVLWH 186
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 27.1 bits (61), Expect = 4.0
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 9/95 (9%)
Query: 84 AYLVEIDNRVIEVSKKYLPGMAVGLSD--PRLTVHVGDGFRFMSEHQQEFDVIITDSSDP 141
++ + + V + G L L + + T S
Sbjct: 302 PNVILAEPDRVTVDGRAYDG--FTLRAFLQALAEKAPA-----RPASAQKSSVPTCSLTA 354
Query: 142 VGPAESLFQASYFELMSRALRPGGIVCSQAGTLWY 176
L ++ L + ++ G W+
Sbjct: 355 TSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWF 389
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 26.3 bits (59), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 57 NPKKVLIVGGGDGG--VAREVLKHP 79
KKVLI G G G +A + +
Sbjct: 3 AKKKVLIYGAGSAGLQLANMLRQGK 27
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 27.2 bits (61), Expect = 4.5
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 58 PKKVLIVGGG 67
P K L+VG
Sbjct: 210 PGKTLVVGAS 219
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 27.1 bits (61), Expect = 4.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 58 PKKVLIVGGG 67
P K L+VG
Sbjct: 185 PGKTLVVGAS 194
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)
pyrophosphoryl-undecaprenol...; rossmann fold,
transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2
PDB: 1nlm_A*
Length = 364
Score = 26.7 bits (60), Expect = 4.8
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 57 NPKKVLIVGGGDGG-------VAREVLKH 78
K+++++ GG GG VA ++
Sbjct: 5 QGKRLMVMAGGTGGHVFPGLAVAHHLMAQ 33
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 26.7 bits (60), Expect = 5.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 58 PKKVLIVGGG 67
P K L+VG G
Sbjct: 187 PGKTLVVGAG 196
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 27.1 bits (61), Expect = 5.0
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 58 PKKVLIVGGG 67
P + +IVG G
Sbjct: 187 PGRSVIVGAG 196
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 58 PKKVLIVGGG 67
PKKV++VG G
Sbjct: 185 PKKVVVVGAG 194
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 27.1 bits (60), Expect = 5.1
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 7 LQVEEPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKK 60
+QV YP +S ++ D + F YSE + L P+
Sbjct: 308 VQVNWLAYPGTSGAPWM-DYVLGDAFALPPALEPF-YSEHVLRLQGAFQPSDTS 359
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 26.7 bits (60), Expect = 5.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 58 PKKVLIVGGG 67
PK+ L VGGG
Sbjct: 187 PKRALCVGGG 196
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 26.8 bits (60), Expect = 5.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 56 PNPKKVLIVGGG 67
KK+ IVG G
Sbjct: 174 KESKKIGIVGSG 185
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 26.8 bits (60), Expect = 5.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 58 PKKVLIVGGG 67
P++VL VGGG
Sbjct: 191 PRRVLTVGGG 200
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 26.7 bits (60), Expect = 5.3
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 58 PKKVLIVGGG 67
P+ +LI GGG
Sbjct: 170 PESILIAGGG 179
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 26.7 bits (59), Expect = 5.5
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 64 VGGGDGGVAREVL-KHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFR 122
VGGG GGV + + P ++ V +V+ + L GD F+
Sbjct: 200 VGGGTGGVTKLIHEIFPHLK--CTVFDQPQVVGNLT----------GNENLNFVGGDMFK 247
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 26.7 bits (58), Expect = 5.7
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 60 KVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
KV + GGG+G ++ VE ++ + E L LTV V
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGVE-VRVLTLFADEAER-------WTKALGADELTVIV 55
Query: 118 GDGFRFMSEHQQEFDVIITDSSDPVGPAE-------SLFQASYFELMSRALRPGGIVCS- 169
+ +E + VI D + A+ + YF+ M+ ++ ++
Sbjct: 56 NEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115
Query: 170 --QAGTLWYSLDCVGNTLQHCASVF 192
QAG + D +G+ + +
Sbjct: 116 PSQAGFEFQCRDILGDKAAAVSMMS 140
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 26.3 bits (58), Expect = 5.8
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 59 KKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLS-DPRLTVHV 117
++L +G G G ++ E+ S ++I++ I +++ + + V
Sbjct: 32 DEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKV 89
Query: 118 GDGFRFMSEHQQEFDVII--------TDSSDPVGPAESLFQASYFELMSRALRPGGIVC 168
+ +S H FD + D + ++ + + R L+PG +
Sbjct: 90 ENA-SSLSFHDSSFDFAVMQAFLTSVPDPKE---------RSRIIKEVFRVLKPGAYLY 138
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 26.7 bits (60), Expect = 5.9
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 58 PKKVLIVGGG 67
PK ++IVGGG
Sbjct: 191 PKSIVIVGGG 200
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 26.7 bits (60), Expect = 5.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 58 PKKVLIVGGG 67
PK+V I+G G
Sbjct: 166 PKRVAIIGAG 175
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 26.7 bits (58), Expect = 6.0
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 25/141 (17%)
Query: 42 SYSEMIAFLPLCSHPNP-KKVLIVGGGDGGV----AREVLKHPSVESAYLVEIDNRVIEV 96
++ + I + NP VL G G GG+ ++ V V E+ ++
Sbjct: 89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRV---ISFEVRKDHHDL 145
Query: 97 SKK--------YLPGMAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIITDSSDPVGPAESL 148
+KK + D +H FD + D +P
Sbjct: 146 AKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP------- 198
Query: 149 FQASYFELMSRALRPGGIVCS 169
+ L+ GG+
Sbjct: 199 --HVTLPVFYPHLKHGGVCAV 217
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 26.7 bits (60), Expect = 6.2
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 58 PKKVLIVGGG 67
P++V +VG G
Sbjct: 167 PERVAVVGAG 176
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 26.2 bits (58), Expect = 6.2
Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 32/129 (24%)
Query: 44 SEMIAFLPLCSHPNPKKVLIVGGGDGGVAREVLKHPSVESAYLVEIDNRVIEVSKKYLPG 103
E + + ++ G G+G + +L+ Y ++I+ ++ K+
Sbjct: 7 EEYLPNIFE---GKKGVIVDYGCGNGFYCKYLLEF--ATKLYCIDINVIALKEVKEKFDS 61
Query: 104 MAVGLSDPRLTVHVGDGFRFMSEHQQEFDVIIT-----DSSDPVGPAESLFQASYFELMS 158
+ + + D D I+ D D +
Sbjct: 62 V----------ITLSDPKEIPDN---SVDFILFANSFHDMDDK---------QHVISEVK 99
Query: 159 RALRPGGIV 167
R L+ G V
Sbjct: 100 RILKDDGRV 108
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 26.5 bits (59), Expect = 6.3
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 58 PKKVLIVGGG 67
P K L++G
Sbjct: 286 PGKTLVIGAS 295
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 26.1 bits (58), Expect = 6.4
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 94 IEVSKKYLPGMAVGLSD------PRLTVHVGDGFRFMSEH--QQEFDVIITDSSDPVGPA 145
IEV + PG+ L+ L V D + + ++ DP
Sbjct: 64 IEV---HSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDP-WHK 119
Query: 146 ES-----LFQASYFELMSRALRPGGIV 167
+ Q + EL+ L+ GG+
Sbjct: 120 ARHNKRRIVQVPFAELVKSKLQLGGVF 146
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 26.4 bits (59), Expect = 6.5
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 60 KVLIVGGGDGG--VAREVLKHPSVESAYLVEIDNRVIEVSKKYLPGMAVGLSDPRLTVHV 117
KV+I+GG +AR +L + +I ++ A + T+
Sbjct: 2 KVIIIGGETTAYYLARSMLSR---------KYGVVIINKDRELCEEFA---KKLKATIIH 49
Query: 118 GDG 120
GDG
Sbjct: 50 GDG 52
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 26.1 bits (58), Expect = 6.6
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 16/88 (18%)
Query: 87 VEIDNRVIEVSKKYLPGMAVGLSDPRLTVHVGDGFRFM------SEHQQEFDVIITDSSD 140
++ D E+ ++ G+ ++ D + E + +D D+ D
Sbjct: 101 IDFDREAYEIGLPFIR--KAGVEH-KINFIESDAMLALDNLLQGQESEGSYDFGFVDA-D 156
Query: 141 PVGPAESLFQASYFELMSRALRPGGIVC 168
Y E + + ++ GGIV
Sbjct: 157 KPN------YIKYHERLMKLVKVGGIVA 178
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 26.4 bits (59), Expect = 6.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 59 KKVLIVGGGD 68
++V I+GGGD
Sbjct: 155 RRVAILGGGD 164
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 26.5 bits (59), Expect = 7.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 58 PKKVLIVGGGDGGVA 72
++ + GGG G+
Sbjct: 11 TRRAEVAGGGFAGLT 25
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 26.4 bits (59), Expect = 7.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 59 KKVLIVGGGD 68
K+VLIVGGGD
Sbjct: 153 KRVLIVGGGD 162
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 26.2 bits (58), Expect = 7.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 54 SHPNPKKVLIVGGGDGG 70
+ + K V I+GGG G
Sbjct: 22 NLLSDKNVAIIGGGPVG 38
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 25.5 bits (56), Expect = 7.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 92 RVIEVSKKYLPGMAVGLSDPRLTVHVGD 119
RVI S +P G DP ++V D
Sbjct: 10 RVIVESASNIPKTKFGKPDPIVSVIFKD 37
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 26.3 bits (58), Expect = 8.6
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 64 VGGGDGGVAREVL-KHPSV 81
VGGG G A+ + P +
Sbjct: 195 VGGGTGTTAKIICETFPKL 213
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 26.1 bits (58), Expect = 9.2
Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 129 QEFDVIITDSSDPVGPAESLFQASYFELMSRALRPGGIVCSQAGT 173
+ D + Y++ M + ++P G + +
Sbjct: 216 ELVDYVF----CTFNTD------MYYDDMIQLVKPRGHIATIVAF 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,087,724
Number of extensions: 184660
Number of successful extensions: 1059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 219
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)