BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4593
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
G+ + QD D ++++ ++ P + PAESLF+ SY++LM AL+ G
Sbjct: 158 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 203
Query: 66 IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++C Q W LD + Q C S+FP VAY +PTYPSGQIGF+L S+
Sbjct: 204 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 255
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
G+ + QD D ++++ ++ P + PAESLF+ SY++LM AL+ G
Sbjct: 158 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 203
Query: 66 IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++C Q W LD + Q C S+FP VAY +PTYPSGQIGF+L S+
Sbjct: 204 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 255
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +F+ ++RALRPGG+VC+QA +L
Sbjct: 182 DGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESL 238
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W D + + + +C +F V Y T VPTYPSG IGF L
Sbjct: 239 WLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXL 279
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KN ++++ ++ P V PAESLF SY+EL+ AL+ GI+ SQ ++W L + +
Sbjct: 179 KNEFDVIITDSSDP---VGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHL 235
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVL 114
+ +FP V Y + V TYPSG +G+++
Sbjct: 236 VAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
+D + F+ V N +++ ++ P + PAE+LF +++E + AL+P G +Q +
Sbjct: 177 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
LW + + N + + +F +V Y +PTYP G IG +
Sbjct: 233 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
+D + F+ V N +++ ++ P + PAE+LF +++E + AL+P G +Q +
Sbjct: 138 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 193
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
LW + + N + + +F +V Y +PTYP G IG +
Sbjct: 194 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 233
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
+D + F+ V N +++ ++ P + PAE+LF +++E + AL+P G +Q +
Sbjct: 139 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
LW + + N + + +F +V Y +PTYP G IG +
Sbjct: 195 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 234
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +++AL+ GI +Q W++ + + N
Sbjct: 146 ENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ +FP +PTYPSG F +GS+
Sbjct: 203 QRDVKEIFPITKLYTANIPTYPSGLWTFTIGSK 235
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 19 FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 78
F+ N +V+ P PA LF ++++ + R L+P GI C+Q ++W L
Sbjct: 161 FVRQTPDNTYDVVIIDTTDPA---GPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDL 217
Query: 79 DCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ + + F V Y VPTYP G IG ++ S+
Sbjct: 218 ELIEKXSRFIRETGFASVQYALXHVPTYPCGSIGTLVCSK 257
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 30 LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
+++S P + P ESLF ++++E R L PGGI +Q G + + ++ + +
Sbjct: 160 VIISDCTDP---IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLS 216
Query: 90 SVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
F V + +PTY G + F +
Sbjct: 217 HYFSDVGFYQAAIPTYYGGIMTFAWATD 244
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 24 VKNMCGL--VVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81
+KN G +++ + P V PA+ LF ++ + AL GI +QAG+++ D +
Sbjct: 147 IKNNRGFDVIIADSTDP---VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 203
Query: 82 GNTLQHCASVFPRVAYGATCVPTYPS 107
+ + VF RV Y + V Y S
Sbjct: 204 ISAYKEMKKVFDRVYYYSFPVIGYAS 229
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PAE LF +++ RAL GI +QAG+++ D + VF +V Y +
Sbjct: 166 VGPAEMLFSEEFYKNAYRALNDPGIYVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP 225
Query: 102 VPTYPS 107
V Y S
Sbjct: 226 VIGYAS 231
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KN +++ + P LF +++ AL+ G+ ++ +Y +
Sbjct: 161 KNEFDVIIIDSTDP--TAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLA 218
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ + VFP + TYPSG + S+
Sbjct: 219 YRRISKVFPITRVYLGFMTTYPSGMWSYTFASK 251
>pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|B Chain B, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|C Chain C, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|D Chain D, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
Length = 257
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 30 LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTLQHC 88
++++ AAG +CPAE L + +++ L G CSQA G W GN +
Sbjct: 86 ILINNAAG--NFICPAEDLSVNGWNSVINIVLN-GTFYCSQAIGKYWIEKGIKGNIINXV 142
Query: 89 AS 90
A+
Sbjct: 143 AT 144
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTL 74
PA L+ ++ L+ L PGG++ QAG +
Sbjct: 168 PARLLYTVEFYRLVKAHLNPGGVMGMQAGMI 198
>pdb|2XKR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp142: A
Novel Cholesterol Oxidase
Length = 398
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 21 SGPVKNMCGLVVSGAAGPGRVVCPAES---LFQASYFE 55
+ PVKNMC ++ + G +C E LF+++ F+
Sbjct: 274 TAPVKNMCRVLTADTEFHGTALCAGEKMMLLFESANFD 311
>pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73.
pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73
Length = 246
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 90 SVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++ PR Y +PT P+G + ++GS+
Sbjct: 169 NLHPRAHYSIKTLPTIPAGGVRLLIGSE 196
>pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
Length = 257
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 90 SVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++ PR Y +PT P+G + ++GS+
Sbjct: 172 NLHPRAHYSIKTLPTIPAGGVRLLIGSE 199
>pdb|2QC5|A Chain A, Streptogramin B Lyase Structure
Length = 300
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 54 FELMSRALRPGGIVCSQAGTLWYSLDC 80
++L + P GI + G++W++L C
Sbjct: 265 YQLQTENAEPHGITFGKDGSVWFALKC 291
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTL 74
PA L+ ++ L+ L PGG++ Q G +
Sbjct: 168 PARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,940,159
Number of Sequences: 62578
Number of extensions: 142252
Number of successful extensions: 289
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 22
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)