BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4593
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC12C2.07c PE=3 SV=1
Length = 298
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N ++++ ++ P PAE+LFQ YF+L+S ALR GG++ +QA +W L + N
Sbjct: 159 QNTFDVIITDSSDPD---GPAEALFQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNV 215
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
L +VFP V Y T +PTYPSG IGFV+ S+
Sbjct: 216 LTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASK 248
>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3
PE=3 SV=1
Length = 291
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KN ++++ ++ P PAESLFQ YF+L+ ALR GG++ +QA W L +
Sbjct: 157 KNTFDVIITDSSDPE---GPAESLFQKPYFQLLHDALREGGVITTQAENQWLHLPLITKL 213
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPM 129
+ C VFP Y T +PTYPSGQIGF++ S+ +AN VP+
Sbjct: 214 KKDCKEVFPVAEYAYTTIPTYPSGQIGFMVCSK--DPNANVKVPL 256
>sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1
Length = 302
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
G+ + QD D ++++ ++ P + PAESLF+ SY++LM AL+ G
Sbjct: 156 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 201
Query: 66 IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++C Q W LD + Q C S+FP VAY +PTYPSGQIGF+L S+
Sbjct: 202 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 253
>sp|O48661|SPD2_ARATH Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2
Length = 340
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +FE ++RALRPGG+VC+QA +L
Sbjct: 186 DGVAFLKNAAEGTYDAVIVDSSDP---IGPAKELFEKPFFESVNRALRPGGVVCTQAESL 242
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W +D + + + +C +F V Y T VPTYPSG IGF+L
Sbjct: 243 WLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFML 283
>sp|Q9XY92|SPEE_DICDI Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2
Length = 284
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D +FM K ++++ ++ P + PA+ LF+ +Y+EL+ AL PGGIVCSQ ++
Sbjct: 143 DGMEFMRQR-KGEFDVIITDSSDP---IGPAQGLFERAYYELLKAALAPGGIVCSQCESM 198
Query: 75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVL 114
W LD + C ++P V Y T +P+YP G IGF+L
Sbjct: 199 WLHLDTIKGLTTFCKELYPNVEYAYTSIPSYPGGSIGFIL 238
>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1
Length = 334
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +F+ ++RALRPGG+VC+QA +L
Sbjct: 182 DGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESL 238
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W +D + + + +C +F V Y T VPTYPSG IGF+L
Sbjct: 239 WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML 279
>sp|Q64674|SPEE_MOUSE Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1
Length = 302
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 14/112 (12%)
Query: 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
G+ + QD D ++++ ++ P + PAESLF+ SY++LM AL+ G
Sbjct: 156 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 201
Query: 66 IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
I+C Q W LD + C S+FP V Y +PTYPSGQIGF+L S+
Sbjct: 202 ILCCQGECQWLHLDLIKEMRHFCKSLFPVVDYAYCSIPTYPSGQIGFMLCSK 253
>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1
Length = 342
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +F+ ++RALRPGG++C+QA ++
Sbjct: 189 DGVAFLKAAPEGTYDAVIVDSSDP---IGPAQELFEKPFFQSVARALRPGGVMCTQAESI 245
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W +D + + + +C +F V Y T VPTYPSG IGF+L
Sbjct: 246 WLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFML 286
>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1
Length = 334
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +FE ++RALRPGG+VC+QA ++
Sbjct: 181 DGVAFLKAAPEGTYDAVIVDSSDP---IGPAQELFEKPFFESVARALRPGGVVCTQAESI 237
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W + + + + +C VF V Y T VPTYPSG IGF+L
Sbjct: 238 WLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFML 278
>sp|Q96556|SPD1_DATST Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1
Length = 308
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE ++RALRPGG+VC+QA ++W + + + + +C +F V Y T
Sbjct: 178 IGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWT 237
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 238 TVPTYPSGVIGFML 251
>sp|Q12074|SPEE_YEAST Spermidine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=SPE3 PE=1 SV=1
Length = 293
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N ++++ ++ P PAE+LFQ YF+L++ AL G++ +QA ++W L + +
Sbjct: 159 QNTFDVIITDSSDPE---GPAETLFQKEYFQLLNSALTEKGVITTQAESMWIHLPIIKDL 215
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ C+ VFP Y +PTYP+G IGF++ S+
Sbjct: 216 KKACSEVFPVAEYSFVTIPTYPTGTIGFMVCSK 248
>sp|Q9SMB1|SPD1_ORYSJ Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1
PE=2 SV=1
Length = 323
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D F+ + V+ ++ P + PA+ LF+ +F+ ++RALRPGG+VC+QA ++
Sbjct: 169 DGVAFLKNAPEGTYDAVIVDSSDP---IGPAQELFEKPFFQSVARALRPGGVVCTQAESI 225
Query: 75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
W + + + + +C VF V Y T VPTYPSG IGF+L
Sbjct: 226 WLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFML 266
>sp|O82147|SPDE_COFAR Spermidine synthase OS=Coffea arabica PE=2 SV=1
Length = 316
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+VC+QA ++W + + + + +C +F V Y T
Sbjct: 186 IGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWT 245
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 246 TVPTYPSGVIGFML 259
>sp|B0STV8|SPEE_LEPBP Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=speE PE=3 SV=1
Length = 281
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 3 SYRGYPVLSARQDCTDFMSGPV---------------KNMCGLVVSGAAGPGRVVCPAES 47
SY+ +P +C D M P K +++ ++ P V PAE
Sbjct: 117 SYKYFP------ECADAMKDPKVIHHYDDGAKFARDNKGRFDVILVDSSDP---VGPAEV 167
Query: 48 LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPS 107
LF+ +F M+ AL+P GI+ +QA + WY D + + + +FP Y T +PTYPS
Sbjct: 168 LFKEPFFRDMASALKPTGIIATQAESFWYHGDVITSLFEFIPKIFPEYGYYYTTIPTYPS 227
Query: 108 GQIGFVLGSQLLKQHA 123
G IGF S + +A
Sbjct: 228 GIIGFTFLSNAIDPYA 243
>sp|B0SI93|SPEE_LEPBA Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=speE PE=3 SV=1
Length = 281
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 3 SYRGYPVLSARQDCTDFMSGPV---------------KNMCGLVVSGAAGPGRVVCPAES 47
SY+ +P +C D M P K +++ ++ P V PAE
Sbjct: 117 SYKYFP------ECADAMKDPKVIHHYDDGAKFARDNKGRFDVILVDSSDP---VGPAEV 167
Query: 48 LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPS 107
LF+ +F M+ AL+P GI+ +QA + WY D + + + +FP Y T +PTYPS
Sbjct: 168 LFKEPFFRDMASALKPTGIIATQAESFWYHGDVITSLFEFIPKIFPEYGYYYTTIPTYPS 227
Query: 108 GQIGFVLGSQLLKQHA 123
G IGF S + +A
Sbjct: 228 GIIGFTFLSNAIDPYA 243
>sp|Q9SEH4|PMT4_TOBAC Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3
SV=1
Length = 419
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+VC+QA ++W + + + +C VF V Y T
Sbjct: 291 IGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQVFKGSVNYAWT 350
Query: 101 CVPTYPSGQIGFVLGS 116
VPTYP+G IG++L S
Sbjct: 351 TVPTYPTGVIGYMLCS 366
>sp|Q96557|SPD2_DATST Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1
Length = 317
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE ++RALRPGG+V +QA ++W + + + +C +F V Y T
Sbjct: 188 IGPAQELFEKPFFETIARALRPGGVVSTQAESIWLHMHIIEEIVANCREIFKGSVNYAWT 247
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 248 TVPTYPSGMIGFML 261
>sp|O48660|SPDE_NICSY Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1
Length = 314
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE ++RALRPGG+V +QA ++W + + + +C +F V Y T
Sbjct: 184 IGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWT 243
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 244 TVPTYPSGMIGFML 257
>sp|O48658|SPD1_HYONI Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1
Length = 315
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE ++RALRPGG+V +QA ++W + + + +C +F V Y T
Sbjct: 186 IGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWT 245
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 246 TVPTYPSGMIGFML 259
>sp|Q9SEH5|PMT3_TOBAC Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3
SV=1
Length = 381
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+VC+QA ++W + + + +C VF V Y T
Sbjct: 253 IGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQVFKGSVNYAWT 312
Query: 101 CVPTYPSGQIGFVL 114
VPTYP+G IG++L
Sbjct: 313 TVPTYPTGVIGYML 326
>sp|Q9SEH7|PMT2_TOBAC Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3
SV=1
Length = 353
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+VC+QA ++W + + + +C VF V Y T
Sbjct: 225 IGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQVFKGSVNYAWT 284
Query: 101 CVPTYPSGQIGFVL 114
VPTYP+G IG++L
Sbjct: 285 TVPTYPTGVIGYML 298
>sp|O48659|SPD2_HYONI Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1
Length = 308
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE ++RAL PGG+VC+QA ++W + + + + +C +F V Y T
Sbjct: 178 IGPAQELFEKPFFESVARALCPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWT 237
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 238 TVPTYPSGVIGFML 251
>sp|Q9ZS45|SPDE_SOLLC Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+V +QA ++W + + + +C +F V Y T
Sbjct: 213 IGPAQELFEKPFFESIAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWT 272
Query: 101 CVPTYPSGQIGFVL 114
VPTYPSG IGF+L
Sbjct: 273 TVPTYPSGMIGFML 286
>sp|Q42963|PMT1_TOBAC Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2
SV=1
Length = 375
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
+ PA+ LF+ +FE +++ALRPGG+VC+QA ++W + + + +C VF V Y T
Sbjct: 247 IGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQVFKGSVNYAWT 306
Query: 101 CVPTYPSGQIGFVL 114
PTYP+G IG++L
Sbjct: 307 TAPTYPTGVIGYML 320
>sp|Q94BN2|SPSY_ARATH Spermine synthase OS=Arabidopsis thaliana GN=SPMS PE=1 SV=1
Length = 359
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D +F+ + ++ ++ P V PA +L + +FE ++RAL+PGG++C+ A ++
Sbjct: 205 DAAEFLRKSPEGKYDAIIVDSSDP---VGPALALVEKPFFETLARALKPGGVLCNMAESM 261
Query: 75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116
W + + + C F V Y + VPTYPSG IGFVL S
Sbjct: 262 WLHTHLIEDMISICRQTFKSVHYAWSSVPTYPSGVIGFVLCS 303
>sp|Q12455|SPSY_YEAST Spermine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPE4 PE=1 SV=1
Length = 300
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 18 DFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG-TLWY 76
D + V ++++ ++ P PAE+ FQ YFEL+ AL P G+V Q+ W
Sbjct: 158 DIGASDVHKKFDVIITDSSDPE---GPAEAFFQERYFELLKDALNPNGVVIMQSSENFWL 214
Query: 77 SLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTL 131
+L + + VFP Y T VPTY SGQ+G ++ S N+++P+ +
Sbjct: 215 NLKYLHDLKNTAKKVFPNTEYCYTMVPTYTSGQLGLIVCSN------NANIPLNI 263
>sp|Q5WB31|SPEE_BACSK Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE
PE=3 SV=1
Length = 275
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85
N +++ + P V PA LF+ ++E +S+AL+ GI +Q W+ + V N
Sbjct: 147 NEYDVIMVDSTEP---VGPAAKLFERGFYEGISKALKEDGIFVAQTDNPWFHQELVSNVY 203
Query: 86 QHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ +FP +PTYPSG F +GS+
Sbjct: 204 KDVKEIFPITRLYTANIPTYPSGMWTFTIGSK 235
>sp|B9MRW0|SPEE_CALBD Spermidine synthase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=speE PE=3 SV=1
Length = 278
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KNM +++ + P V PA LFQ S+++ + L+ G+ +Q + +Y D + N
Sbjct: 149 KNMFDVIIVDSTDP---VGPAVGLFQDSFYKAVFECLKEDGLFVAQTESPFYDQDLIKNV 205
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
S+FP +PTYPSG F LGS+
Sbjct: 206 FHAVKSIFPITRLYLGFIPTYPSGLWSFTLGSK 238
>sp|A4XKM9|SPEE_CALS8 Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1
Length = 278
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KNM +++ + P V PA LF++++++ + L+ G+ +Q + +Y D + N
Sbjct: 149 KNMFDVIIVDSTDP---VGPAVGLFESNFYQAVYECLKEDGLFVAQTESPFYDQDLIRNV 205
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
S+FP +PTYPSG F +GS+
Sbjct: 206 FHSIKSIFPITRLYLGFIPTYPSGLWSFTMGSK 238
>sp|A7GVB2|SPEE_BACCN Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=speE PE=3 SV=1
Length = 275
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +S+AL+ GI +Q W++ + + N
Sbjct: 146 ENEYDVIMVDSTEP---VGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITNV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++ +FP +PTYPSG F +GS+
Sbjct: 203 VKDVKEIFPITRLYTANIPTYPSGLWTFTIGSK 235
>sp|Q8EXA3|SPEE2_LEPIN Spermidine synthase 2 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=speE2
PE=3 SV=2
Length = 280
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PAE LF+ ++E M+ L+ GGI +Q + +Y + +F Y T
Sbjct: 162 VGPAEVLFKRPFYETMANCLKEGGICTTQGESFYYHGSIIRELFNFIPEIFKHCGYYYTV 221
Query: 102 VPTYPSGQIGFVLGSQ 117
VPTYPSG IGF S+
Sbjct: 222 VPTYPSGIIGFTYCSK 237
>sp|P70998|SPEE_BACSU Spermidine synthase OS=Bacillus subtilis (strain 168) GN=speE PE=1
SV=1
Length = 276
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +++AL+ GI +Q W++ + + N
Sbjct: 147 ENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNV 203
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ +FP +PTYPSG F +GS+
Sbjct: 204 QRDVKEIFPITKLYTANIPTYPSGLWTFTIGSK 236
>sp|A9VSG3|SPEE_BACWK Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4)
GN=speE PE=3 SV=1
Length = 275
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +S+AL+ GI +Q W++ + +
Sbjct: 146 ENEYDVIMVDSTEP---VGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS 132
+ +FP +PTYPSG F +GS+ H P+ +S
Sbjct: 203 FKDVKEIFPITRLYTANIPTYPSGLWTFTIGSK-------KHDPLEVS 243
>sp|Q72X78|SPEE_BACC1 Spermidine synthase OS=Bacillus cereus (strain ATCC 10987) GN=speE
PE=3 SV=1
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +S+AL+ GI +Q W++ + +
Sbjct: 146 ENEYDVIMVDSTEP---VGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS 132
+ +FP +PTYPSG F +GS+ H P+ +S
Sbjct: 203 FKDVKEIFPITRLYTANIPTYPSGLWTFTIGSK-------KHDPLEVS 243
>sp|Q81JT0|SPEE1_BACAN Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +S+AL+ GI +Q W++ + +
Sbjct: 146 ENEYDVIMVDSTEP---VGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS 132
+ +FP +PTYPSG F +GS+ H P+ +S
Sbjct: 203 FKDVKEIFPITRLYTANIPTYPSGLWTFTIGSK-------KHDPLEVS 243
>sp|Q814Q1|SPEE1_BACCR Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=speE1 PE=3 SV=1
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P V PA +LF ++ +S+AL+ GI +Q W++ + +
Sbjct: 146 ENEYDVIMVDSTEP---VGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTV 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ +FP +PTYPSG F +GS+
Sbjct: 203 FKDVKEIFPITRLYTANIPTYPSGLWTFTIGSK 235
>sp|Q9K6B8|SPEE_BACHD Spermidine synthase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=speE PE=3
SV=1
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PA LF+ +++ +++AL+ GI +Q W+ + + +FP
Sbjct: 160 VGPAVKLFEKGFYQGIAKALKEDGIFVAQTDNPWFHGELIRKVYADVQEIFPITRLYTAN 219
Query: 102 VPTYPSGQIGFVLGSQ 117
+PTYPSG F +GS+
Sbjct: 220 IPTYPSGLWTFTIGSK 235
>sp|Q6L1F4|SPEE_PICTO Probable spermidine synthase OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=speE
PE=3 SV=1
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 29 GLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 88
L++ + P V PAE LF S++E L GI+ +Q+G+ +Y + + +
Sbjct: 152 DLIIIDSTDP---VGPAEGLFNKSFYENARARLSDDGIIVTQSGSPYYQPEALKMATKGM 208
Query: 89 ASVFPRVAYGATCVPTYPSGQIGFVLGSQ-LLKQHANSHVP 128
VF V +PTYPSG F + S+ + Q ++ +P
Sbjct: 209 LDVFSNVRTYIAFIPTYPSGLWSFTMASKSEIMQRKDNIIP 249
>sp|Q891W4|SPEE_CLOTE Spermidine synthase OS=Clostridium tetani (strain Massachusetts /
E88) GN=speE PE=3 SV=1
Length = 281
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KN +V+ + P AE LF S++ +S L GI +Q T +Y + V
Sbjct: 147 KNEFDVVIIDSTDP---FGAAEGLFGGSFYGKISECLTEDGIFVAQTETPFYLPEIVKRV 203
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPM 129
+VFP +PTYPSG F +GS K+H P+
Sbjct: 204 YDDSKAVFPVTKLFMAAIPTYPSGYWSFTIGS---KKHDPEKAPV 245
>sp|B1I5Z0|SPEE_DESAP Spermidine synthase OS=Desulforudis audaxviator (strain MP104C)
GN=speE PE=3 SV=1
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
K LV+ + P + PA LF ++ + AL+ G+ +Q + +++ D +
Sbjct: 146 KKTFDLVIVDSTDP---IGPAVGLFSLEFYRSIYEALKDEGLFVAQTESPYFNTDLILRI 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHV 127
+ A +FP C+PTYP F +GS K+H + V
Sbjct: 203 YRDIAGIFPLARTYWACIPTYPGAMWSFTIGS---KKHDPAQV 242
>sp|C4K3X3|SPEE_HAMD5 Spermidine synthase OS=Hamiltonella defensa subsp. Acyrthosiphon
pisum (strain 5AT) GN=speE PE=3 SV=1
Length = 290
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 29 GLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 88
L++S + P + P E LF++S+++ R L GG+ +Q G + V NT Q
Sbjct: 153 DLIISDSTDP---IGPGEHLFKSSFYQACRRILNAGGLFVAQNGVCFLQQTEVINTYQRL 209
Query: 89 ASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
F V++ +PTY G + F S+
Sbjct: 210 MPYFSDVSFYQAAIPTYYGGIMTFAWASE 238
>sp|Q2RHH3|SPEE_MOOTA Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073)
GN=speE PE=3 SV=1
Length = 283
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
+N +++ + P + PA LF A ++ + RAL+ G+ +Q + ++ +
Sbjct: 147 ENTYDVIIVDSTDP---IGPAVGLFSAEFYRNVYRALKADGVFVAQTESPIFNSRLIRRI 203
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ +FP T VPTYP G F LGS+
Sbjct: 204 QRDLKEIFPIARLYLTTVPTYPGGLWAFSLGSK 236
>sp|Q2NVS1|SPEE_SODGM Spermidine synthase OS=Sodalis glossinidius (strain morsitans)
GN=speE PE=3 SV=1
Length = 287
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
D +F+S + +++S P + P ESLF +++++ +R L GGI +Q G
Sbjct: 140 DGVNFVSQSSEKF-DVIISDCTDP---IGPGESLFTSNFYQDCARCLNEGGIFVAQNGVC 195
Query: 75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ D V N+ + F +++ VPTY G + F SQ
Sbjct: 196 FLQQDEVVNSHRKLGHYFSDISFYQAAVPTYYGGIMTFAWASQ 238
>sp|A3DDA0|SPEE_CLOTH Spermidine synthase OS=Clostridium thermocellum (strain ATCC 27405
/ DSM 1237) GN=speE PE=3 SV=1
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
KN +++ + P + PAE LF ++ + L+ GI +Q + + + +
Sbjct: 146 KNEFDVIIIDSTDP---IGPAEGLFAIDFYRAVYDCLKEDGIFVAQTESPFIDKELITRI 202
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
++ S+FP +PTYP+G F +GS+
Sbjct: 203 IRDVKSLFPITRLYTCAIPTYPTGYWCFTMGSK 235
>sp|A8GJ06|SPEE_SERP5 Spermidine synthase OS=Serratia proteamaculans (strain 568) GN=speE
PE=3 SV=1
Length = 287
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 30 LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
+++S P + P ESLF ++++E +R L GGI +Q G + D N+ +
Sbjct: 154 VIISDCTDP---IGPGESLFTSAFYEGCARCLNEGGIFVAQNGVCFLQQDEAVNSHTRLS 210
Query: 90 SVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
F V++ +PTY G + F SQ
Sbjct: 211 QYFKDVSFYQAAIPTYYGGIMTFAWASQ 238
>sp|Q9X6R0|SPEE1_PSEAE Spermidine synthase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=speE1 PE=3 SV=2
Length = 286
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 30 LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
+++S + P + P E LF ++++ R L GGI+ +Q GT + L+ V T
Sbjct: 151 VIISDSTDP---IGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTD 207
Query: 90 SVFPRVAYGATCVPTYPSGQIGFVLGS 116
+F + VPTY G + F GS
Sbjct: 208 GLFADWHFYQAAVPTYIGGAMTFAWGS 234
>sp|Q66EH3|SPEE_YERPS Spermidine synthase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=speE PE=3 SV=1
Length = 296
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D +F++ + +++S P + P ESLF + ++E +R+L GGI +Q G
Sbjct: 139 DDGVNFVNQTTEKF-DVIISDCTDP---IGPGESLFTSVFYEGCARSLNEGGIFVAQNGV 194
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ D N+ + F V++ +PTY G + F +Q
Sbjct: 195 CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTYYGGIMTFAWATQ 238
>sp|B2K4I2|SPEE_YERPB Spermidine synthase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=speE PE=3 SV=1
Length = 296
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D +F++ + +++S P + P ESLF + ++E +R+L GGI +Q G
Sbjct: 139 DDGVNFVNQTTEKF-DVIISDCTDP---IGPGESLFTSVFYEGCARSLNEGGIFVAQNGV 194
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ D N+ + F V++ +PTY G + F +Q
Sbjct: 195 CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTYYGGIMTFAWATQ 238
>sp|A7FM33|SPEE_YERP3 Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=speE PE=3 SV=1
Length = 296
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D +F++ + +++S P + P ESLF + ++E +R+L GGI +Q G
Sbjct: 139 DDGVNFVNQTTEKF-DVIISDCTDP---IGPGESLFTSVFYEGCARSLNEGGIFVAQNGV 194
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ D N+ + F V++ +PTY G + F +Q
Sbjct: 195 CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTYYGGIMTFAWATQ 238
>sp|B1JK45|SPEE_YERPY Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=speE PE=3 SV=1
Length = 296
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D +F++ + +++S P + P ESLF + ++E +R+L GGI +Q G
Sbjct: 139 DDGVNFVNQTTEKF-DVIISDCTDP---IGPGESLFTSVFYEGCARSLNEGGIFVAQNGV 194
Query: 74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
+ D N+ + F V++ +PTY G + F +Q
Sbjct: 195 CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTYYGGIMTFAWATQ 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,933,945
Number of Sequences: 539616
Number of extensions: 1796547
Number of successful extensions: 3280
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3117
Number of HSP's gapped (non-prelim): 159
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)