Query psy4593
Match_columns 132
No_of_seqs 140 out of 1102
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:54:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01564 Spermine_synth: Sperm 100.0 4.7E-29 1E-33 189.8 11.3 113 4-120 127-240 (246)
2 COG0421 SpeE Spermidine syntha 100.0 7.9E-29 1.7E-33 191.6 12.5 115 6-124 129-243 (282)
3 PLN02366 spermidine synthase 100.0 3.2E-28 6.9E-33 190.4 13.7 113 3-118 141-254 (308)
4 PRK00811 spermidine synthase; 100.0 8.6E-28 1.9E-32 186.1 12.6 113 4-120 128-240 (283)
5 PLN02823 spermine synthase 99.9 3.2E-27 7E-32 186.6 13.5 114 3-120 153-270 (336)
6 PRK01581 speE spermidine synth 99.9 8.4E-26 1.8E-30 179.3 12.9 114 3-120 203-316 (374)
7 TIGR00417 speE spermidine synt 99.9 4.5E-25 9.8E-30 169.7 13.3 112 3-118 122-233 (270)
8 KOG1562|consensus 99.9 1.8E-24 3.9E-29 166.4 10.6 124 2-128 170-294 (337)
9 COG4262 Predicted spermidine s 99.9 1.4E-24 3.1E-29 171.2 8.8 113 2-119 341-453 (508)
10 PRK00536 speE spermidine synth 99.9 3.7E-23 8.1E-28 158.5 10.1 99 3-120 120-218 (262)
11 PRK03612 spermidine synthase; 99.9 1.7E-22 3.7E-27 167.7 10.6 111 3-120 350-462 (521)
12 PRK04457 spermidine synthase; 99.7 9.5E-16 2.1E-20 117.7 12.7 103 5-118 115-217 (262)
13 COG2521 Predicted archaeal met 99.4 9.3E-13 2E-17 99.3 7.7 91 3-97 181-275 (287)
14 PF05430 Methyltransf_30: S-ad 99.0 6.4E-10 1.4E-14 76.8 5.5 91 8-117 32-123 (124)
15 KOG2352|consensus 98.8 8.1E-09 1.7E-13 84.7 4.7 108 6-120 344-458 (482)
16 PRK01747 mnmC bifunctional tRN 98.2 5E-06 1.1E-10 71.1 7.5 71 8-91 148-218 (662)
17 PF13659 Methyltransf_26: Meth 98.2 4.7E-06 1E-10 55.5 5.3 65 6-70 49-114 (117)
18 COG1092 Predicted SAM-dependen 98.1 1E-05 2.3E-10 65.6 6.9 86 3-91 264-357 (393)
19 PF10672 Methyltrans_SAM: S-ad 98.0 1.2E-05 2.6E-10 62.7 5.9 82 4-89 171-256 (286)
20 COG2519 GCD14 tRNA(1-methylade 98.0 2.5E-05 5.5E-10 59.8 7.3 76 7-101 146-222 (256)
21 COG4122 Predicted O-methyltran 97.8 4.3E-05 9.4E-10 57.5 5.8 54 6-69 110-164 (219)
22 TIGR00091 tRNA (guanine-N(7)-) 97.8 0.00023 5E-09 52.1 9.0 81 7-91 66-148 (194)
23 PLN02476 O-methyltransferase 97.8 0.00026 5.6E-09 55.1 9.2 54 7-70 170-227 (278)
24 PF12847 Methyltransf_18: Meth 97.7 3.1E-05 6.8E-10 51.0 3.3 61 5-71 50-111 (112)
25 PRK15128 23S rRNA m(5)C1962 me 97.7 0.00019 4E-09 58.5 7.6 88 7-97 271-366 (396)
26 PRK00121 trmB tRNA (guanine-N( 97.7 0.00056 1.2E-08 50.5 9.2 79 7-91 90-172 (202)
27 PLN02781 Probable caffeoyl-CoA 97.7 0.00039 8.4E-09 52.6 8.6 53 7-69 120-176 (234)
28 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00023 5.1E-09 57.7 7.0 79 7-90 172-250 (390)
29 PF08704 GCD14: tRNA methyltra 97.6 0.00011 2.3E-09 56.3 4.4 79 6-101 91-173 (247)
30 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00025 5.4E-09 52.7 6.1 103 7-116 91-205 (209)
31 PRK11524 putative methyltransf 97.5 0.00043 9.4E-09 53.7 7.5 68 4-71 4-80 (284)
32 COG0220 Predicted S-adenosylme 97.5 0.00051 1.1E-08 52.0 7.4 66 8-73 99-166 (227)
33 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00018 3.9E-09 55.1 4.6 54 6-69 130-188 (247)
34 PF01596 Methyltransf_3: O-met 97.5 0.00012 2.7E-09 54.5 3.5 55 6-70 96-154 (205)
35 PF02390 Methyltransf_4: Putat 97.4 0.00018 3.9E-09 53.1 4.0 82 6-91 66-149 (195)
36 PRK14904 16S rRNA methyltransf 97.4 0.0026 5.6E-08 52.4 10.5 80 8-94 302-398 (445)
37 PRK14901 16S rRNA methyltransf 97.3 0.0028 6.1E-08 52.0 10.3 104 8-115 304-428 (434)
38 PRK14902 16S rRNA methyltransf 97.3 0.003 6.4E-08 51.9 10.1 81 8-93 302-399 (444)
39 PF05175 MTS: Methyltransferas 97.3 0.00015 3.2E-09 52.1 2.0 77 9-98 83-160 (170)
40 COG4121 Uncharacterized conser 97.3 0.00036 7.9E-09 53.5 4.2 60 7-71 146-208 (252)
41 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.0032 7E-08 48.3 9.3 83 7-95 122-221 (264)
42 COG4123 Predicted O-methyltran 97.2 0.01 2.2E-07 45.5 11.7 87 6-97 94-192 (248)
43 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0014 3.1E-08 56.8 7.5 60 7-71 589-656 (702)
44 KOG1663|consensus 97.2 0.0018 3.9E-08 49.1 7.0 93 5-107 123-230 (237)
45 TIGR02469 CbiT precorrin-6Y C5 97.2 0.00099 2.1E-08 44.2 5.2 55 6-71 68-122 (124)
46 PRK00377 cbiT cobalt-precorrin 97.2 0.0054 1.2E-07 44.9 9.4 81 6-102 91-172 (198)
47 PRK14903 16S rRNA methyltransf 97.1 0.003 6.6E-08 51.9 8.6 84 8-96 289-389 (431)
48 PRK13699 putative methylase; P 97.1 0.0014 3.1E-08 49.4 6.1 63 9-71 2-72 (227)
49 PRK11933 yebU rRNA (cytosine-C 97.1 0.0041 8.8E-08 51.8 9.1 83 7-94 164-263 (470)
50 TIGR00438 rrmJ cell division p 97.1 0.0043 9.3E-08 45.0 8.3 87 7-99 72-170 (188)
51 COG2242 CobL Precorrin-6B meth 97.1 0.0051 1.1E-07 45.3 8.2 71 4-91 81-151 (187)
52 TIGR00138 gidB 16S rRNA methyl 97.0 0.0042 9E-08 45.2 7.3 52 7-72 92-143 (181)
53 PLN03075 nicotianamine synthas 96.9 0.0022 4.7E-08 50.4 5.4 58 6-71 176-233 (296)
54 PLN02232 ubiquinone biosynthes 96.8 0.0036 7.7E-08 44.5 5.8 55 7-70 26-80 (160)
55 TIGR03533 L3_gln_methyl protei 96.8 0.007 1.5E-07 47.0 7.8 63 7-72 172-252 (284)
56 PRK10901 16S rRNA methyltransf 96.7 0.018 3.9E-07 47.1 9.8 69 8-76 294-377 (427)
57 TIGR02752 MenG_heptapren 2-hep 96.7 0.015 3.2E-07 43.2 8.5 55 7-70 96-150 (231)
58 TIGR03534 RF_mod_PrmC protein- 96.7 0.01 2.2E-07 44.4 7.6 84 7-98 137-240 (251)
59 PRK04266 fibrillarin; Provisio 96.7 0.02 4.3E-07 43.2 9.2 82 7-97 120-208 (226)
60 PRK15001 SAM-dependent 23S rib 96.7 0.0051 1.1E-07 49.9 6.2 78 7-97 281-359 (378)
61 PRK01544 bifunctional N5-gluta 96.6 0.016 3.6E-07 48.6 9.1 80 7-90 397-477 (506)
62 PF13578 Methyltransf_24: Meth 96.6 0.00066 1.4E-08 44.6 0.5 57 6-70 48-104 (106)
63 PRK08287 cobalt-precorrin-6Y C 96.6 0.021 4.6E-07 41.2 8.5 78 7-102 81-159 (187)
64 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.0064 1.4E-07 49.2 5.7 51 8-70 96-146 (374)
65 cd02440 AdoMet_MTases S-adenos 96.5 0.01 2.2E-07 36.8 5.5 59 5-70 45-103 (107)
66 PRK11036 putative S-adenosyl-L 96.5 0.0074 1.6E-07 45.8 5.6 57 6-70 92-148 (255)
67 PRK11805 N5-glutamine S-adenos 96.5 0.029 6.2E-07 44.2 9.0 63 7-72 184-264 (307)
68 TIGR00080 pimt protein-L-isoas 96.4 0.0072 1.6E-07 44.8 5.0 51 7-72 128-178 (215)
69 PRK14967 putative methyltransf 96.4 0.024 5.2E-07 42.2 7.8 77 8-91 85-175 (223)
70 PRK00107 gidB 16S rRNA methylt 96.4 0.0088 1.9E-07 43.9 5.2 50 8-71 96-145 (187)
71 PF08241 Methyltransf_11: Meth 96.2 0.0035 7.6E-08 39.3 2.3 55 5-69 40-95 (95)
72 TIGR00563 rsmB ribosomal RNA s 96.2 0.024 5.1E-07 46.4 7.6 80 12-95 294-390 (426)
73 PTZ00146 fibrillarin; Provisio 96.2 0.11 2.3E-06 40.9 10.7 96 7-115 181-284 (293)
74 COG0742 N6-adenine-specific me 96.2 0.016 3.4E-07 42.7 5.6 59 6-71 92-154 (187)
75 COG2518 Pcm Protein-L-isoaspar 96.1 0.0099 2.2E-07 44.5 4.6 51 7-72 120-170 (209)
76 PF03602 Cons_hypoth95: Conser 96.1 0.005 1.1E-07 45.0 2.9 57 8-71 93-153 (183)
77 PRK07402 precorrin-6B methylas 96.1 0.08 1.7E-06 38.5 9.2 53 7-71 90-142 (196)
78 PRK09489 rsmC 16S ribosomal RN 96.0 0.08 1.7E-06 42.4 9.3 76 9-98 247-323 (342)
79 PLN02396 hexaprenyldihydroxybe 96.0 0.019 4.2E-07 45.6 5.7 54 7-70 180-234 (322)
80 PLN02233 ubiquinone biosynthes 96.0 0.016 3.6E-07 44.3 5.2 55 7-70 127-181 (261)
81 PRK01683 trans-aconitate 2-met 96.0 0.02 4.3E-07 43.3 5.6 55 7-71 76-130 (258)
82 PF02353 CMAS: Mycolic acid cy 95.9 0.0081 1.7E-07 46.6 3.5 54 7-71 112-166 (273)
83 PRK13944 protein-L-isoaspartat 95.9 0.015 3.3E-07 42.9 4.7 50 7-71 124-173 (205)
84 PF01209 Ubie_methyltran: ubiE 95.8 0.0068 1.5E-07 45.9 2.6 55 7-70 98-152 (233)
85 PRK13942 protein-L-isoaspartat 95.8 0.017 3.6E-07 42.9 4.6 50 7-71 127-176 (212)
86 PRK09328 N5-glutamine S-adenos 95.8 0.049 1.1E-06 41.3 7.2 84 6-97 157-260 (275)
87 COG0144 Sun tRNA and rRNA cyto 95.8 0.04 8.7E-07 44.2 6.9 87 7-95 208-310 (355)
88 PF06460 NSP13: Coronavirus NS 95.7 0.053 1.1E-06 42.1 6.9 84 25-116 119-207 (299)
89 PRK14103 trans-aconitate 2-met 95.7 0.022 4.8E-07 43.1 4.8 55 7-71 72-126 (255)
90 PLN02244 tocopherol O-methyltr 95.6 0.024 5.1E-07 45.1 4.8 55 7-70 168-222 (340)
91 TIGR02072 BioC biotin biosynth 95.5 0.029 6.4E-07 41.2 5.0 55 7-70 80-134 (240)
92 TIGR00537 hemK_rel_arch HemK-r 95.5 0.087 1.9E-06 37.7 7.2 84 7-98 66-164 (179)
93 KOG1709|consensus 95.4 0.032 7E-07 42.4 4.9 41 22-69 164-204 (271)
94 PTZ00098 phosphoethanolamine N 95.4 0.02 4.4E-07 43.9 3.9 57 6-70 98-155 (263)
95 TIGR01177 conserved hypothetic 95.4 0.037 8.1E-07 43.7 5.4 61 8-71 231-294 (329)
96 PRK04338 N(2),N(2)-dimethylgua 95.4 0.049 1.1E-06 44.2 6.0 50 8-70 108-157 (382)
97 PRK10909 rsmD 16S rRNA m(2)G96 95.3 0.068 1.5E-06 39.6 6.3 56 7-71 102-159 (199)
98 TIGR01934 MenG_MenH_UbiE ubiqu 95.2 0.058 1.3E-06 39.3 5.5 56 6-70 87-142 (223)
99 COG2230 Cfa Cyclopropane fatty 95.1 0.04 8.6E-07 43.1 4.7 54 7-71 122-176 (283)
100 PLN02490 MPBQ/MSBQ methyltrans 95.1 0.31 6.8E-06 39.0 9.8 83 6-97 159-254 (340)
101 PF13847 Methyltransf_31: Meth 95.1 0.022 4.8E-07 39.6 3.0 55 7-70 54-109 (152)
102 TIGR00536 hemK_fam HemK family 95.1 0.12 2.5E-06 40.1 7.2 63 7-72 165-245 (284)
103 TIGR03704 PrmC_rel_meth putati 95.1 0.06 1.3E-06 41.1 5.5 77 9-90 135-230 (251)
104 PRK11873 arsM arsenite S-adeno 95.1 0.068 1.5E-06 40.8 5.8 55 7-70 128-182 (272)
105 PF13649 Methyltransf_25: Meth 95.0 0.0064 1.4E-07 39.5 0.0 52 6-65 48-101 (101)
106 PRK14968 putative methyltransf 94.9 0.15 3.2E-06 36.2 6.9 63 8-73 74-150 (188)
107 KOG4300|consensus 94.9 0.086 1.9E-06 39.9 5.7 56 7-70 125-181 (252)
108 smart00828 PKS_MT Methyltransf 94.9 0.041 8.9E-07 40.5 4.0 55 6-70 49-103 (224)
109 PF05401 NodS: Nodulation prot 94.9 0.025 5.3E-07 42.1 2.7 88 7-102 89-182 (201)
110 KOG1271|consensus 94.8 0.075 1.6E-06 39.5 5.1 59 9-74 120-184 (227)
111 COG2226 UbiE Methylase involve 94.8 0.25 5.4E-06 37.7 8.1 53 9-70 103-155 (238)
112 PF08242 Methyltransf_12: Meth 94.5 0.047 1E-06 35.0 3.2 34 26-67 65-99 (99)
113 PF05185 PRMT5: PRMT5 arginine 94.4 0.028 6.2E-07 46.5 2.4 57 6-70 240-296 (448)
114 PF02005 TRM: N2,N2-dimethylgu 94.4 0.064 1.4E-06 43.5 4.4 53 6-70 101-153 (377)
115 PLN02672 methionine S-methyltr 94.4 0.37 8E-06 44.1 9.4 91 7-102 184-306 (1082)
116 COG2813 RsmC 16S RNA G1207 met 94.3 0.11 2.3E-06 41.0 5.3 61 26-98 223-286 (300)
117 PRK08317 hypothetical protein; 94.3 0.095 2.1E-06 38.3 4.9 56 6-70 68-123 (241)
118 TIGR01983 UbiG ubiquinone bios 94.3 0.14 3E-06 37.6 5.7 55 8-70 94-148 (224)
119 TIGR00406 prmA ribosomal prote 94.2 0.23 5E-06 38.5 7.1 71 8-96 210-280 (288)
120 PRK00312 pcm protein-L-isoaspa 94.2 0.073 1.6E-06 39.1 4.1 51 7-72 126-176 (212)
121 KOG1661|consensus 94.1 0.076 1.7E-06 40.1 4.0 54 3-71 140-193 (237)
122 PHA03411 putative methyltransf 94.1 0.19 4.2E-06 39.2 6.3 78 7-89 109-202 (279)
123 COG2227 UbiG 2-polyprenyl-3-me 94.1 0.087 1.9E-06 40.3 4.2 35 25-71 122-161 (243)
124 PRK11207 tellurite resistance 94.1 0.11 2.3E-06 38.0 4.6 53 8-68 79-131 (197)
125 PRK05134 bifunctional 3-demeth 94.0 0.15 3.2E-06 37.9 5.4 55 8-70 96-150 (233)
126 PF02475 Met_10: Met-10+ like- 94.0 0.05 1.1E-06 40.4 2.8 48 7-68 152-199 (200)
127 PRK10258 biotin biosynthesis p 93.9 0.22 4.8E-06 37.4 6.1 53 9-70 87-139 (251)
128 PLN02336 phosphoethanolamine N 93.8 0.083 1.8E-06 43.6 4.1 59 7-70 83-141 (475)
129 PRK00216 ubiE ubiquinone/menaq 93.8 0.17 3.6E-06 37.2 5.2 55 6-69 102-156 (239)
130 PF01135 PCMT: Protein-L-isoas 93.7 0.053 1.1E-06 40.5 2.4 50 7-71 123-172 (209)
131 TIGR00095 RNA methyltransferas 93.6 0.26 5.6E-06 36.0 5.9 57 7-71 99-159 (189)
132 PRK06922 hypothetical protein; 93.5 0.54 1.2E-05 40.9 8.5 65 7-71 467-537 (677)
133 COG4106 Tam Trans-aconitate me 93.4 0.25 5.4E-06 37.6 5.5 72 7-89 75-146 (257)
134 PRK11088 rrmA 23S rRNA methylt 93.4 0.073 1.6E-06 40.8 2.8 49 7-71 133-181 (272)
135 TIGR00740 methyltransferase, p 93.3 0.16 3.5E-06 38.0 4.6 55 7-70 106-160 (239)
136 PLN02336 phosphoethanolamine N 93.3 0.17 3.8E-06 41.7 5.1 55 7-70 314-368 (475)
137 PRK01544 bifunctional N5-gluta 93.3 0.61 1.3E-05 39.2 8.4 61 7-70 189-268 (506)
138 PRK15451 tRNA cmo(5)U34 methyl 93.2 0.12 2.6E-06 39.1 3.7 55 7-70 109-163 (247)
139 KOG2899|consensus 93.1 0.11 2.4E-06 40.1 3.4 45 24-70 163-208 (288)
140 PRK15068 tRNA mo(5)U34 methylt 93.0 0.27 5.8E-06 38.9 5.5 54 6-70 171-225 (322)
141 TIGR03840 TMPT_Se_Te thiopurin 92.8 0.17 3.6E-06 37.8 3.9 58 5-68 92-149 (213)
142 PF04378 RsmJ: Ribosomal RNA s 92.7 1 2.2E-05 34.6 8.1 83 6-97 102-189 (245)
143 KOG0780|consensus 92.7 0.31 6.8E-06 40.1 5.5 87 25-119 181-269 (483)
144 PRK10742 putative methyltransf 92.5 0.13 2.8E-06 39.6 3.0 31 7-38 145-175 (250)
145 PRK13943 protein-L-isoaspartat 92.4 0.32 6.9E-06 38.7 5.3 50 7-71 131-180 (322)
146 PF11899 DUF3419: Protein of u 92.4 0.26 5.6E-06 40.1 4.8 59 7-71 275-334 (380)
147 PRK00517 prmA ribosomal protei 92.3 0.81 1.8E-05 34.7 7.2 70 27-117 179-249 (250)
148 PRK14966 unknown domain/N5-glu 92.2 1 2.3E-05 37.2 8.1 85 7-97 300-403 (423)
149 PF01728 FtsJ: FtsJ-like methy 91.8 0.098 2.1E-06 37.4 1.6 84 26-115 90-178 (181)
150 smart00138 MeTrc Methyltransfe 91.7 0.12 2.7E-06 39.7 2.1 55 8-70 186-241 (264)
151 TIGR00452 methyltransferase, p 91.6 0.48 1E-05 37.6 5.4 55 6-70 170-224 (314)
152 PF13489 Methyltransf_23: Meth 91.6 0.097 2.1E-06 35.9 1.3 40 24-71 75-115 (161)
153 PRK11705 cyclopropane fatty ac 91.5 0.34 7.3E-06 39.3 4.6 53 8-71 214-267 (383)
154 PF05219 DREV: DREV methyltran 91.1 0.37 8.1E-06 37.3 4.2 53 6-70 134-187 (265)
155 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.9 0.2 4.4E-06 38.9 2.6 89 7-97 136-243 (283)
156 TIGR00477 tehB tellurite resis 90.8 0.53 1.2E-05 34.3 4.6 51 9-68 79-130 (195)
157 PRK12335 tellurite resistance 90.7 0.38 8.3E-06 37.2 4.1 54 8-69 168-221 (287)
158 COG2961 ComJ Protein involved 90.7 1.6 3.6E-05 33.8 7.2 82 5-95 132-218 (279)
159 KOG1122|consensus 90.4 1.9 4.2E-05 35.7 7.8 90 7-98 292-396 (460)
160 COG1867 TRM1 N2,N2-dimethylgua 90.1 0.76 1.6E-05 37.3 5.3 52 7-70 102-153 (380)
161 COG4627 Uncharacterized protei 89.9 0.43 9.4E-06 34.5 3.4 18 51-68 66-83 (185)
162 KOG1270|consensus 89.9 0.28 6E-06 38.2 2.5 39 25-71 156-195 (282)
163 PRK13255 thiopurine S-methyltr 89.8 0.44 9.6E-06 35.6 3.6 56 4-66 94-150 (218)
164 PF07942 N2227: N2227-like pro 89.8 0.33 7.2E-06 37.7 3.0 61 6-74 143-204 (270)
165 COG4976 Predicted methyltransf 89.4 0.11 2.4E-06 39.9 0.0 53 11-71 172-225 (287)
166 KOG1540|consensus 89.0 1.3 2.8E-05 34.6 5.6 51 5-69 157-212 (296)
167 PHA03412 putative methyltransf 88.9 1.2 2.5E-05 34.2 5.3 59 7-69 97-160 (241)
168 TIGR02085 meth_trns_rumB 23S r 88.8 1.8 3.8E-05 35.0 6.6 53 8-71 282-334 (374)
169 PF05891 Methyltransf_PK: AdoM 88.7 0.23 5E-06 37.5 1.4 37 25-69 120-159 (218)
170 PF04445 SAM_MT: Putative SAM- 88.4 0.14 3E-06 39.0 -0.0 28 7-35 132-159 (234)
171 KOG1253|consensus 88.4 0.67 1.4E-05 39.0 3.9 53 7-70 161-215 (525)
172 TIGR00479 rumA 23S rRNA (uraci 88.2 1.8 3.8E-05 35.4 6.3 53 7-69 340-394 (431)
173 COG3963 Phospholipid N-methylt 87.8 1.4 3.1E-05 32.3 4.9 59 8-71 95-156 (194)
174 PF02527 GidB: rRNA small subu 87.8 1.9 4.1E-05 31.6 5.6 53 7-73 98-150 (184)
175 COG0293 FtsJ 23S rRNA methylas 87.6 1.7 3.7E-05 32.5 5.3 69 26-98 110-182 (205)
176 COG2520 Predicted methyltransf 87.5 6 0.00013 31.9 8.7 51 7-70 238-288 (341)
177 PF05724 TPMT: Thiopurine S-me 87.3 0.67 1.5E-05 34.7 3.1 56 4-66 94-150 (218)
178 PF05063 MT-A70: MT-A70 ; Int 86.9 2.4 5.3E-05 30.4 5.8 45 28-74 1-55 (176)
179 KOG3010|consensus 86.0 1.9 4.1E-05 33.3 4.9 24 50-73 115-139 (261)
180 TIGR03438 probable methyltrans 85.4 1.6 3.5E-05 34.0 4.5 57 9-70 117-176 (301)
181 TIGR02716 C20_methyl_CrtF C-20 85.3 1.6 3.4E-05 33.9 4.4 20 51-70 234-253 (306)
182 PF05711 TylF: Macrocin-O-meth 85.2 0.92 2E-05 34.9 3.0 55 5-70 155-211 (248)
183 COG1041 Predicted DNA modifica 84.7 3.2 6.9E-05 33.5 5.9 59 11-71 249-310 (347)
184 smart00650 rADc Ribosomal RNA 84.7 2.4 5.1E-05 30.0 4.8 54 6-71 58-113 (169)
185 PRK03522 rumB 23S rRNA methylu 84.5 5.7 0.00012 31.1 7.3 54 7-71 221-274 (315)
186 PF03848 TehB: Tellurite resis 83.8 0.82 1.8E-05 33.8 2.0 81 9-97 79-164 (192)
187 PRK13256 thiopurine S-methyltr 83.4 1.8 3.9E-05 32.8 3.8 61 4-69 100-161 (226)
188 PRK13168 rumA 23S rRNA m(5)U19 82.6 4.6 9.9E-05 33.2 6.2 54 7-71 345-400 (443)
189 PF07090 DUF1355: Protein of u 82.5 1 2.3E-05 32.8 2.2 42 26-74 66-111 (177)
190 COG2890 HemK Methylase of poly 82.3 6.5 0.00014 30.5 6.7 53 18-71 168-238 (280)
191 KOG2915|consensus 82.2 4.4 9.6E-05 31.9 5.6 77 7-100 157-236 (314)
192 KOG4589|consensus 81.4 5.4 0.00012 29.9 5.5 71 24-98 133-207 (232)
193 PF08351 DUF1726: Domain of un 81.3 2.3 4.9E-05 27.7 3.2 36 26-71 10-45 (92)
194 KOG2940|consensus 81.3 0.55 1.2E-05 36.3 0.3 56 5-69 115-172 (325)
195 PF01739 CheR: CheR methyltran 81.0 1.3 2.8E-05 32.7 2.3 55 8-70 119-174 (196)
196 KOG0822|consensus 80.9 1.3 2.9E-05 37.8 2.5 85 6-97 420-509 (649)
197 PF10294 Methyltransf_16: Puta 80.5 2 4.2E-05 30.8 3.0 55 25-90 117-172 (173)
198 PF03059 NAS: Nicotianamine sy 80.4 4.3 9.2E-05 31.7 5.0 58 6-71 173-230 (276)
199 PRK10611 chemotaxis methyltran 79.9 1.2 2.6E-05 34.9 1.8 39 26-70 222-261 (287)
200 PF06859 Bin3: Bicoid-interact 79.7 1.1 2.4E-05 30.3 1.4 20 51-70 24-43 (110)
201 PF08472 S6PP_C: Sucrose-6-pho 79.4 2.7 5.8E-05 29.4 3.2 41 49-93 43-83 (133)
202 COG0863 DNA modification methy 79.0 6.8 0.00015 29.8 5.8 64 5-71 13-99 (302)
203 COG4798 Predicted methyltransf 77.3 2.4 5.2E-05 31.9 2.6 22 49-70 144-165 (238)
204 COG1352 CheR Methylase of chem 77.0 2.6 5.5E-05 32.8 2.9 40 25-70 200-240 (268)
205 PF14314 Methyltrans_Mon: Viru 75.9 14 0.00031 32.5 7.3 92 24-120 412-503 (675)
206 PF01269 Fibrillarin: Fibrilla 75.8 2.5 5.4E-05 32.2 2.4 93 7-110 122-221 (229)
207 PF12147 Methyltransf_20: Puta 75.6 7.5 0.00016 30.9 5.1 73 10-91 191-266 (311)
208 PF08003 Methyltransf_9: Prote 74.3 8.4 0.00018 30.7 5.1 77 13-100 170-268 (315)
209 PF01555 N6_N4_Mtase: DNA meth 74.3 3.8 8.3E-05 29.5 3.1 26 50-75 35-60 (231)
210 PTZ00357 methyltransferase; Pr 74.1 3.2 7E-05 36.9 2.9 56 6-66 762-830 (1072)
211 KOG2198|consensus 73.4 15 0.00032 30.0 6.4 71 25-95 234-322 (375)
212 PF09445 Methyltransf_15: RNA 72.5 3.1 6.6E-05 30.0 2.1 32 6-39 47-79 (163)
213 PF10354 DUF2431: Domain of un 72.5 4.3 9.4E-05 29.1 2.9 46 25-70 73-124 (166)
214 KOG3178|consensus 71.8 3.2 7E-05 33.4 2.3 19 51-69 255-273 (342)
215 KOG3045|consensus 71.8 12 0.00025 29.6 5.2 42 51-95 244-287 (325)
216 PF00891 Methyltransf_2: O-met 71.5 4.9 0.00011 29.9 3.2 54 6-70 142-198 (241)
217 COG1236 YSH1 Predicted exonucl 71.3 10 0.00023 31.2 5.3 59 28-91 181-239 (427)
218 PF07669 Eco57I: Eco57I restri 69.7 23 0.00051 23.1 5.8 63 27-92 2-73 (106)
219 COG4098 comFA Superfamily II D 68.8 16 0.00035 29.9 5.6 77 26-117 115-193 (441)
220 KOG1099|consensus 68.7 17 0.00036 28.2 5.4 87 25-118 113-205 (294)
221 KOG1596|consensus 68.6 16 0.00036 28.5 5.4 80 5-93 203-289 (317)
222 PRK05031 tRNA (uracil-5-)-meth 68.5 14 0.00031 29.6 5.4 52 8-71 255-320 (362)
223 TIGR02143 trmA_only tRNA (urac 68.0 19 0.00041 28.8 6.0 52 8-71 246-311 (353)
224 KOG2361|consensus 67.5 24 0.00051 27.4 6.1 67 4-70 93-182 (264)
225 COG0079 HisC Histidinol-phosph 67.4 29 0.00062 27.9 6.9 83 26-118 144-229 (356)
226 PF06080 DUF938: Protein of un 66.7 18 0.00038 27.1 5.2 43 50-94 120-167 (204)
227 PHA02754 hypothetical protein; 66.3 6 0.00013 23.8 2.1 19 51-69 17-35 (67)
228 PF14740 DUF4471: Domain of un 66.2 24 0.00052 27.8 6.1 71 8-90 201-275 (289)
229 COG2264 PrmA Ribosomal protein 66.1 29 0.00063 27.5 6.5 58 26-97 228-286 (300)
230 KOG2798|consensus 65.3 4.8 0.0001 32.4 2.0 57 9-73 240-297 (369)
231 PF10237 N6-adenineMlase: Prob 64.2 15 0.00034 26.3 4.4 34 25-69 84-121 (162)
232 PF05148 Methyltransf_8: Hypot 64.0 5 0.00011 30.3 1.8 41 51-94 138-180 (219)
233 COG0541 Ffh Signal recognition 63.2 5.7 0.00012 33.1 2.2 59 26-93 181-240 (451)
234 KOG3191|consensus 62.9 26 0.00057 26.1 5.4 84 5-95 91-189 (209)
235 COG4565 CitB Response regulato 62.5 42 0.0009 25.5 6.5 49 14-73 36-84 (224)
236 COG1889 NOP1 Fibrillarin-like 62.0 47 0.001 25.2 6.6 78 6-92 123-206 (231)
237 PF11968 DUF3321: Putative met 61.6 21 0.00046 27.0 4.8 39 24-66 101-139 (219)
238 TIGR02987 met_A_Alw26 type II 60.2 37 0.0008 28.5 6.6 18 52-69 177-194 (524)
239 KOG1975|consensus 59.7 18 0.0004 29.3 4.4 34 51-91 217-250 (389)
240 PF01170 UPF0020: Putative RNA 59.7 14 0.0003 26.6 3.5 59 7-70 88-150 (179)
241 cd03065 PDI_b_Calsequestrin_N 59.0 9.1 0.0002 26.0 2.3 39 30-70 29-70 (120)
242 KOG0926|consensus 57.1 19 0.00041 32.8 4.3 43 48-95 463-508 (1172)
243 PF06325 PrmA: Ribosomal prote 56.9 9.9 0.00022 29.9 2.5 73 24-117 222-294 (295)
244 COG2197 CitB Response regulato 56.4 73 0.0016 23.4 7.0 47 10-65 29-75 (211)
245 TIGR02081 metW methionine bios 56.4 20 0.00042 25.8 3.9 50 7-63 55-104 (194)
246 PRK04296 thymidine kinase; Pro 56.4 14 0.00029 26.8 3.0 44 15-69 67-110 (190)
247 PF00072 Response_reg: Respons 56.3 22 0.00048 22.2 3.8 47 14-69 30-76 (112)
248 COG2265 TrmA SAM-dependent met 55.4 53 0.0012 27.3 6.6 54 7-70 341-395 (432)
249 PF10781 DSRB: Dextransucrase 55.1 18 0.00039 21.6 2.8 23 90-112 25-47 (62)
250 PRK10046 dpiA two-component re 54.2 42 0.0009 24.4 5.4 50 12-69 35-84 (225)
251 cd08164 MPP_Ted1 Saccharomyces 54.1 33 0.00072 25.3 4.7 43 51-93 33-77 (193)
252 PRK06498 isocitrate lyase; Pro 54.0 43 0.00094 28.5 5.8 51 54-105 335-385 (531)
253 COG4098 comFA Superfamily II D 53.8 36 0.00078 28.0 5.2 66 3-74 167-243 (441)
254 PF01861 DUF43: Protein of unk 53.8 42 0.00092 25.8 5.4 50 8-65 93-142 (243)
255 KOG2484|consensus 53.0 66 0.0014 26.8 6.6 60 27-97 146-211 (435)
256 COG1618 Predicted nucleotide k 52.9 16 0.00035 26.7 2.8 58 26-95 99-156 (179)
257 TIGR03587 Pse_Me-ase pseudamin 52.9 88 0.0019 22.9 7.4 81 7-97 88-178 (204)
258 COG3288 PntA NAD/NADP transhyd 52.4 21 0.00046 28.7 3.6 37 25-68 242-278 (356)
259 PRK11783 rlmL 23S rRNA m(2)G24 50.7 38 0.00083 29.8 5.3 60 7-69 283-345 (702)
260 TIGR02021 BchM-ChlM magnesium 50.6 56 0.0012 23.7 5.6 53 7-70 104-157 (219)
261 KOG0259|consensus 50.1 29 0.00062 28.8 4.1 48 15-70 190-237 (447)
262 PF02384 N6_Mtase: N-6 DNA Met 49.7 14 0.0003 28.6 2.3 59 9-69 107-181 (311)
263 cd01977 Nitrogenase_VFe_alpha 49.3 49 0.0011 27.0 5.5 77 30-108 57-134 (415)
264 PRK10708 hypothetical protein; 48.5 23 0.0005 21.1 2.5 23 90-112 25-47 (62)
265 PRK00050 16S rRNA m(4)C1402 me 48.4 38 0.00082 26.7 4.5 20 51-70 216-235 (296)
266 TIGR00006 S-adenosyl-methyltra 47.5 39 0.00085 26.8 4.5 20 51-70 220-239 (305)
267 PRK11760 putative 23S rRNA C24 47.1 18 0.00038 29.4 2.5 76 4-92 249-327 (357)
268 PRK09958 DNA-binding transcrip 47.1 65 0.0014 22.3 5.3 45 8-60 24-70 (204)
269 PF06962 rRNA_methylase: Putat 47.1 11 0.00025 26.4 1.3 63 7-70 26-91 (140)
270 PRK05785 hypothetical protein; 46.3 56 0.0012 24.3 5.0 46 11-65 96-141 (226)
271 PRK11475 DNA-binding transcrip 46.0 1.1E+02 0.0023 22.5 6.5 53 12-69 22-74 (207)
272 PF03291 Pox_MCEL: mRNA cappin 45.7 11 0.00023 30.1 1.1 42 26-70 144-185 (331)
273 KOG0257|consensus 45.6 38 0.00083 28.1 4.2 46 20-70 165-210 (420)
274 COG0745 OmpR Response regulato 44.8 56 0.0012 24.5 4.8 45 7-60 23-68 (229)
275 PF02310 B12-binding: B12 bind 44.7 84 0.0018 20.2 5.8 60 26-99 27-86 (121)
276 cd00550 ArsA_ATPase Oxyanion-t 44.6 41 0.00088 25.5 4.1 11 26-36 123-133 (254)
277 PF13709 DUF4159: Domain of un 44.5 43 0.00093 24.8 4.1 47 47-95 65-112 (207)
278 COG0357 GidB Predicted S-adeno 44.5 1.3E+02 0.0029 22.5 8.2 87 4-105 114-201 (215)
279 PF07021 MetW: Methionine bios 44.3 19 0.00042 26.7 2.2 55 7-69 55-109 (193)
280 COG3172 NadR Predicted ATPase/ 44.2 28 0.00061 25.5 2.9 46 25-70 112-161 (187)
281 COG4753 Response regulator con 44.1 61 0.0013 27.4 5.3 55 6-69 25-81 (475)
282 TIGR03029 EpsG chain length de 44.0 76 0.0017 23.9 5.6 53 25-90 210-262 (274)
283 COG0500 SmtA SAM-dependent met 43.9 65 0.0014 19.9 4.5 54 9-71 100-155 (257)
284 COG0489 Mrp ATPases involved i 43.2 80 0.0017 24.2 5.6 67 14-93 153-219 (265)
285 COG2874 FlaH Predicted ATPases 43.0 57 0.0012 24.9 4.5 42 26-69 122-163 (235)
286 PRK06202 hypothetical protein; 42.9 47 0.001 24.5 4.1 56 6-70 110-165 (232)
287 TIGR03552 F420_cofC 2-phospho- 42.6 1.1E+02 0.0023 21.7 5.9 42 64-111 92-133 (195)
288 cd07938 DRE_TIM_HMGL 3-hydroxy 42.5 1.4E+02 0.003 23.0 6.8 49 49-97 146-196 (274)
289 PRK09935 transcriptional regul 41.3 90 0.0019 21.5 5.3 49 13-69 35-83 (210)
290 KOG2356|consensus 39.1 29 0.00063 27.8 2.5 64 7-73 162-235 (366)
291 PF04989 CmcI: Cephalosporin h 38.3 75 0.0016 23.8 4.5 55 7-69 85-145 (206)
292 TIGR01627 A_thal_3515 uncharac 38.0 61 0.0013 24.6 4.0 35 25-59 136-172 (225)
293 PRK07580 Mg-protoporphyrin IX 37.7 62 0.0013 23.4 4.1 51 7-68 112-163 (230)
294 PF01795 Methyltransf_5: MraW 37.5 39 0.00085 26.9 3.1 19 51-69 221-239 (310)
295 TIGR01091 upp uracil phosphori 36.7 87 0.0019 23.0 4.7 61 27-102 122-182 (207)
296 PRK12422 chromosomal replicati 36.6 1.2E+02 0.0026 25.2 6.0 73 26-105 201-273 (445)
297 cd06896 PX_PI3K_C2_gamma The p 36.5 46 0.00099 22.1 2.8 26 77-107 32-57 (101)
298 PRK09483 response regulator; P 36.4 1.2E+02 0.0025 21.2 5.3 46 7-60 25-72 (217)
299 PLN02585 magnesium protoporphy 36.4 1.6E+02 0.0034 23.4 6.3 70 7-93 197-267 (315)
300 KOG1136|consensus 36.3 59 0.0013 26.7 3.9 52 16-71 188-239 (501)
301 COG1743 Adenine-specific DNA m 35.2 21 0.00045 32.1 1.3 29 8-36 465-498 (875)
302 cd02904 Macro_H2A_like Macro d 34.8 1.8E+02 0.004 21.3 7.6 66 2-72 13-88 (186)
303 COG2224 AceA Isocitrate lyase 34.8 1E+02 0.0022 25.7 5.0 49 56-105 273-323 (433)
304 cd01853 Toc34_like Toc34-like 34.7 1.8E+02 0.0039 22.1 6.3 65 27-93 78-145 (249)
305 PRK09468 ompR osmolarity respo 34.1 1.2E+02 0.0027 21.6 5.2 49 13-69 35-83 (239)
306 PRK05692 hydroxymethylglutaryl 33.8 2.1E+02 0.0047 22.2 6.7 49 48-96 151-201 (287)
307 cd06168 LSm9 The eukaryotic Sm 33.6 8.4 0.00018 24.0 -1.0 36 2-37 6-43 (75)
308 TIGR03675 arCOG00543 arCOG0054 33.6 1.1E+02 0.0023 26.8 5.4 46 26-71 363-409 (630)
309 COG0275 Predicted S-adenosylme 33.6 80 0.0017 25.2 4.2 20 51-70 224-243 (314)
310 COG1743 Adenine-specific DNA m 33.4 60 0.0013 29.3 3.8 20 51-70 568-587 (875)
311 PRK12555 chemotaxis-specific m 33.3 1.4E+02 0.0031 23.2 5.7 33 6-38 23-57 (337)
312 PRK10867 signal recognition pa 33.2 67 0.0015 26.7 3.9 39 26-69 182-220 (433)
313 PF03266 NTPase_1: NTPase; In 32.9 42 0.00092 23.9 2.4 33 26-65 94-126 (168)
314 PRK06358 threonine-phosphate d 32.8 2E+02 0.0043 22.5 6.5 85 26-116 140-228 (354)
315 COG0686 Ald Alanine dehydrogen 32.3 86 0.0019 25.4 4.2 54 6-68 212-265 (371)
316 cd02037 MRP-like MRP (Multiple 32.2 28 0.00061 24.2 1.4 54 26-91 66-119 (169)
317 COG0784 CheY FOG: CheY-like re 32.1 74 0.0016 20.2 3.4 39 14-60 36-76 (130)
318 TIGR00682 lpxK tetraacyldisacc 32.0 35 0.00075 27.0 2.0 27 11-39 125-151 (311)
319 cd03412 CbiK_N Anaerobic cobal 31.6 1.3E+02 0.0028 20.3 4.6 37 65-101 2-39 (127)
320 TIGR00453 ispD 2-C-methyl-D-er 31.5 1.2E+02 0.0026 21.8 4.7 36 56-91 83-119 (217)
321 COG4076 Predicted RNA methylas 31.3 12 0.00026 28.2 -0.7 53 6-70 79-134 (252)
322 PRK00129 upp uracil phosphorib 31.2 2.1E+02 0.0046 21.0 6.1 57 28-102 125-184 (209)
323 PRK09836 DNA-binding transcrip 31.2 1.4E+02 0.0031 21.0 5.0 39 13-59 30-68 (227)
324 PRK10816 DNA-binding transcrip 31.2 1.4E+02 0.003 21.0 4.9 26 13-38 30-55 (223)
325 PRK14086 dnaA chromosomal repl 30.7 1E+02 0.0023 26.9 4.8 73 26-105 376-448 (617)
326 PF06180 CbiK: Cobalt chelatas 30.7 1.4E+02 0.003 23.1 5.0 38 65-102 2-41 (262)
327 PRK10840 transcriptional regul 30.3 1.3E+02 0.0028 21.5 4.7 52 13-69 35-86 (216)
328 PRK05166 histidinol-phosphate 29.9 2.6E+02 0.0056 22.0 6.7 85 27-116 159-246 (371)
329 PF02845 CUE: CUE domain; Int 29.6 48 0.001 17.8 1.8 14 83-96 3-16 (42)
330 TIGR00959 ffh signal recogniti 29.6 91 0.002 25.9 4.1 39 26-69 181-219 (428)
331 COG0116 Predicted N6-adenine-s 29.5 1.4E+02 0.003 24.6 5.0 58 7-70 281-343 (381)
332 PF12804 NTP_transf_3: MobA-li 29.5 1.8E+02 0.0039 19.5 6.3 43 54-96 76-119 (160)
333 PF10551 MULE: MULE transposas 29.4 1.2E+02 0.0026 18.5 3.9 38 52-97 44-81 (93)
334 PRK06274 indolepyruvate oxidor 29.3 70 0.0015 23.0 3.1 23 50-72 75-97 (197)
335 PRK11173 two-component respons 29.3 1.5E+02 0.0032 21.2 4.9 47 14-69 34-80 (237)
336 PRK10701 DNA-binding transcrip 29.2 1.6E+02 0.0035 21.0 5.1 47 14-69 32-78 (240)
337 KOG3201|consensus 29.0 1.3E+02 0.0028 22.2 4.3 56 25-91 101-157 (201)
338 PHA03392 egt ecdysteroid UDP-g 28.9 44 0.00095 28.2 2.2 21 17-38 127-147 (507)
339 PRK15369 two component system 28.9 1.5E+02 0.0033 20.0 4.8 50 12-69 34-83 (211)
340 COG0593 DnaA ATPase involved i 28.7 77 0.0017 26.2 3.5 93 6-105 141-246 (408)
341 PRK10336 DNA-binding transcrip 28.5 1.8E+02 0.0038 20.2 5.1 39 13-59 30-68 (219)
342 COG0505 CarA Carbamoylphosphat 28.1 80 0.0017 25.8 3.4 31 60-93 218-248 (368)
343 PRK10430 DNA-binding transcrip 28.0 1.8E+02 0.0039 21.2 5.2 28 25-60 47-74 (239)
344 cd03174 DRE_TIM_metallolyase D 28.0 2.5E+02 0.0054 20.7 6.4 50 48-97 142-193 (265)
345 TIGR01387 cztR_silR_copR heavy 28.0 1.7E+02 0.0037 20.2 5.0 26 13-38 28-53 (218)
346 TIGR00345 arsA arsenite-activa 27.7 35 0.00075 26.4 1.3 11 26-36 111-121 (284)
347 cd08166 MPP_Cdc1_like_1 unchar 27.4 2.1E+02 0.0046 21.1 5.4 21 80-104 99-119 (195)
348 PRK08537 2-oxoglutarate ferred 27.3 73 0.0016 22.6 2.9 22 50-71 75-96 (177)
349 PRK00652 lpxK tetraacyldisacch 27.1 45 0.00098 26.6 1.9 27 11-39 146-172 (325)
350 PF15016 DUF4520: Domain of un 26.8 30 0.00065 22.2 0.7 17 2-18 19-35 (85)
351 TIGR00708 cobA cob(I)alamin ad 26.6 29 0.00063 25.2 0.7 50 14-68 83-133 (173)
352 PF05763 DUF835: Protein of un 26.4 39 0.00084 23.5 1.3 56 10-71 61-118 (136)
353 TIGR01285 nifN nitrogenase mol 26.4 3.1E+02 0.0068 22.6 6.7 80 26-107 57-139 (432)
354 COG1444 Predicted P-loop ATPas 26.3 1.1E+02 0.0024 27.4 4.3 36 26-71 91-126 (758)
355 PRK08727 hypothetical protein; 26.2 2.1E+02 0.0046 21.2 5.3 69 26-102 92-161 (233)
356 PF03269 DUF268: Caenorhabditi 26.1 99 0.0021 22.6 3.3 47 24-70 60-110 (177)
357 smart00448 REC cheY-homologous 26.0 55 0.0012 15.7 1.6 11 26-36 43-53 (55)
358 PRK00050 16S rRNA m(4)C1402 me 25.8 51 0.0011 26.0 2.0 30 7-36 68-99 (296)
359 PF06283 ThuA: Trehalose utili 25.7 68 0.0015 23.4 2.5 57 6-70 31-87 (217)
360 PHA02519 plasmid partition pro 25.6 38 0.00083 27.6 1.3 12 25-36 232-243 (387)
361 PRK10766 DNA-binding transcrip 25.5 2.1E+02 0.0045 20.0 5.1 40 13-60 32-71 (221)
362 TIGR01818 ntrC nitrogen regula 25.5 1.8E+02 0.004 23.5 5.3 49 13-69 28-76 (463)
363 TIGR00347 bioD dethiobiotin sy 25.3 1.7E+02 0.0037 20.0 4.5 41 25-70 97-137 (166)
364 TIGR03584 PseF pseudaminic aci 25.2 1.9E+02 0.0042 21.3 4.9 39 52-90 80-122 (222)
365 PF03141 Methyltransf_29: Puta 25.2 4.4E+02 0.0095 22.6 7.7 42 24-70 424-466 (506)
366 PRK02079 pyrroloquinoline quin 25.2 33 0.00071 22.0 0.7 44 52-95 17-65 (88)
367 PRK00317 mobA molybdopterin-gu 25.1 2.5E+02 0.0054 19.7 5.9 35 59-93 85-119 (193)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 25.1 2.5E+02 0.0054 20.2 5.4 76 27-105 76-153 (185)
369 PRK13869 plasmid-partitioning 24.9 41 0.00088 27.5 1.3 12 25-36 249-260 (405)
370 PRK11083 DNA-binding response 24.8 2.4E+02 0.0052 19.6 5.2 48 14-69 34-81 (228)
371 COG0426 FpaA Uncharacterized f 24.7 3.4E+02 0.0073 22.5 6.5 53 43-100 50-104 (388)
372 PF08309 LVIVD: LVIVD repeat; 24.6 37 0.00081 18.6 0.7 25 11-38 7-31 (42)
373 PRK13705 plasmid-partitioning 24.4 47 0.001 27.0 1.6 12 25-36 232-243 (388)
374 PRK10923 glnG nitrogen regulat 24.3 2E+02 0.0044 23.4 5.3 49 13-69 33-81 (469)
375 COG5379 BtaA S-adenosylmethion 24.3 1.2E+02 0.0026 24.6 3.7 59 7-71 307-366 (414)
376 COG0802 Predicted ATPase or ki 24.2 2.3E+02 0.005 20.1 4.9 40 50-89 11-50 (149)
377 PRK10643 DNA-binding transcrip 23.8 2.1E+02 0.0045 19.8 4.8 26 13-38 30-55 (222)
378 TIGR02175 PorC_KorC 2-oxoacid: 23.8 61 0.0013 23.1 1.9 22 50-71 74-97 (177)
379 PF13394 Fer4_14: 4Fe-4S singl 23.5 1.1E+02 0.0024 19.7 3.1 52 46-97 26-83 (119)
380 TIGR00334 5S_RNA_mat_M5 ribonu 23.5 3E+02 0.0065 20.1 5.9 43 49-96 33-75 (174)
381 cd01966 Nitrogenase_NifN_1 Nit 23.2 2.9E+02 0.0063 22.6 6.0 78 28-107 49-129 (417)
382 PRK08153 histidinol-phosphate 23.2 3.2E+02 0.007 21.5 6.1 83 26-117 154-239 (369)
383 TIGR00288 conserved hypothetic 23.1 1.7E+02 0.0037 21.0 4.1 17 54-70 118-134 (160)
384 PF00463 ICL: Isocitrate lyase 22.7 1.9E+02 0.004 24.9 4.8 44 61-105 375-418 (526)
385 COG0003 ArsA Predicted ATPase 22.6 61 0.0013 25.9 1.9 12 25-36 123-134 (322)
386 PRK08338 2-oxoglutarate ferred 22.5 1E+02 0.0022 21.8 2.9 22 50-71 72-93 (170)
387 TIGR00057 Sua5/YciO/YrdC/YwlC 22.5 88 0.0019 22.9 2.6 25 50-74 7-31 (201)
388 cd01965 Nitrogenase_MoFe_beta_ 22.4 2.4E+02 0.0052 23.0 5.4 78 28-107 49-129 (428)
389 PRK08534 pyruvate ferredoxin o 22.3 72 0.0016 22.8 2.1 23 49-71 73-97 (181)
390 PRK13856 two-component respons 22.3 2.5E+02 0.0053 20.2 5.0 26 13-38 31-56 (241)
391 PRK11091 aerobic respiration c 22.2 1.4E+02 0.0031 26.0 4.2 41 12-60 554-594 (779)
392 cd02540 GT2_GlmU_N_bac N-termi 22.2 3E+02 0.0065 19.6 6.4 40 51-90 76-117 (229)
393 KOG0922|consensus 22.2 2.2E+02 0.0049 25.2 5.2 76 14-106 147-228 (674)
394 PRK07414 cob(I)yrinic acid a,c 22.1 39 0.00084 24.7 0.6 50 15-69 102-152 (178)
395 PF09837 DUF2064: Uncharacteri 22.1 2.6E+02 0.0055 18.8 5.6 48 62-115 59-106 (122)
396 PRK06853 indolepyruvate oxidor 21.9 1.2E+02 0.0025 21.9 3.2 20 52-71 78-97 (197)
397 COG1570 XseA Exonuclease VII, 21.8 1.8E+02 0.004 24.4 4.5 69 25-100 88-168 (440)
398 PRK10693 response regulator of 21.8 2.2E+02 0.0049 21.9 4.9 39 14-60 4-42 (303)
399 cd07290 PX_PI3K_C2_beta The ph 21.8 1.2E+02 0.0026 20.3 2.9 28 77-109 37-64 (109)
400 PF12680 SnoaL_2: SnoaL-like d 21.7 1.9E+02 0.0041 17.1 4.0 48 54-102 13-60 (102)
401 TIGR01007 eps_fam capsular exo 21.7 39 0.00085 24.2 0.6 12 25-36 125-136 (204)
402 PF02606 LpxK: Tetraacyldisacc 21.7 64 0.0014 25.7 1.8 53 11-71 132-186 (326)
403 PRK06249 2-dehydropantoate 2-r 21.6 3.4E+02 0.0074 20.9 5.9 34 26-69 71-104 (313)
404 cd07289 PX_PI3K_C2_alpha The p 21.5 1.3E+02 0.0027 20.2 2.9 27 77-108 37-63 (109)
405 KOG0054|consensus 21.5 5.6E+02 0.012 25.0 8.0 68 25-99 1262-1329(1381)
406 PTZ00062 glutaredoxin; Provisi 21.5 3.1E+02 0.0067 20.3 5.3 38 65-102 18-56 (204)
407 PF02572 CobA_CobO_BtuR: ATP:c 21.3 36 0.00079 24.6 0.3 49 15-69 83-133 (172)
408 PHA02748 viral inexin-like pro 21.3 1.8E+02 0.004 23.5 4.4 43 51-93 311-353 (360)
409 TIGR02875 spore_0_A sporulatio 21.1 2E+02 0.0044 21.1 4.4 41 12-60 33-73 (262)
410 cd02517 CMP-KDO-Synthetase CMP 21.1 2.6E+02 0.0057 20.3 4.9 37 54-90 79-117 (239)
411 PF00919 UPF0004: Uncharacteri 21.0 2.4E+02 0.0053 18.1 4.5 60 25-98 34-96 (98)
412 PRK11517 transcriptional regul 21.0 2.7E+02 0.0059 19.3 4.9 48 13-69 30-77 (223)
413 PRK10651 transcriptional regul 20.9 2.8E+02 0.0062 18.9 5.8 26 13-38 38-63 (216)
414 PHA00691 hypothetical protein 20.9 40 0.00088 20.1 0.4 53 11-67 8-67 (68)
415 PRK10529 DNA-binding transcrip 20.9 2.9E+02 0.0063 19.3 5.1 26 13-38 31-56 (225)
416 KOG2352|consensus 20.8 2.8E+02 0.0061 23.6 5.4 56 7-69 96-159 (482)
417 PRK13233 nifH nitrogenase redu 20.8 71 0.0015 24.1 1.9 13 25-37 116-128 (275)
418 PRK14029 pyruvate/ketoisovaler 20.6 95 0.0021 22.3 2.4 23 49-71 73-97 (185)
419 cd02117 NifH_like This family 20.5 59 0.0013 23.6 1.3 12 25-36 114-125 (212)
420 PF01128 IspD: 2-C-methyl-D-er 20.5 1.1E+02 0.0024 22.9 2.8 26 29-63 93-119 (221)
421 COG2204 AtoC Response regulato 20.3 4.7E+02 0.01 22.1 6.7 40 14-61 35-74 (464)
422 COG1105 FruK Fructose-1-phosph 20.2 4.5E+02 0.0097 21.0 6.2 44 51-94 117-161 (310)
423 PTZ00338 dimethyladenosine tra 20.2 3.1E+02 0.0067 21.4 5.4 52 6-70 84-136 (294)
424 TIGR03542 DAPAT_plant LL-diami 20.1 1.9E+02 0.004 23.1 4.2 39 26-69 172-210 (402)
425 cd01836 FeeA_FeeB_like SGNH_hy 20.0 3.1E+02 0.0067 18.9 7.0 56 50-105 53-117 (191)
No 1
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.96 E-value=4.7e-29 Score=189.80 Aligned_cols=113 Identities=26% Similarity=0.423 Sum_probs=106.1
Q ss_pred CCCCCcEEEEccHHHHhcCCCCC-eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKN-MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
++|||++++++||++||++ +.+ +||+||+|++|| .+++..|||.|||+.|+++|+|||++++|+++++.+...++
T Consensus 127 ~~d~r~~i~~~Dg~~~l~~-~~~~~yDvIi~D~~dp---~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~ 202 (246)
T PF01564_consen 127 LDDPRVRIIIGDGRKFLKE-TQEEKYDVIIVDLTDP---DGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFK 202 (246)
T ss_dssp GGSTTEEEEESTHHHHHHT-SSST-EEEEEEESSST---TSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHH
T ss_pred cCCCceEEEEhhhHHHHHh-ccCCcccEEEEeCCCC---CCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHH
Confidence 6899999999999999999 666 999999999999 78877899999999999999999999999988888889999
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|++|..|...+|+|+++.|+|++||+..+
T Consensus 203 ~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~~ 240 (246)
T PF01564_consen 203 SILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKDIN 240 (246)
T ss_dssp HHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESSTT
T ss_pred HHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCCCC
Confidence 99999999999999999999999999999999999873
No 2
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=7.9e-29 Score=191.56 Aligned_cols=115 Identities=27% Similarity=0.432 Sum_probs=107.6
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
|||++|+++||++||++ ..++|||||+|++|| .+|+..|||.|||+.|+++|+|+||+++|++++|.+.+.+..+.
T Consensus 129 dpRv~i~i~Dg~~~v~~-~~~~fDvIi~D~tdp---~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~ 204 (282)
T COG0421 129 DPRVEIIIDDGVEFLRD-CEEKFDVIIVDSTDP---VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAY 204 (282)
T ss_pred CCceEEEeccHHHHHHh-CCCcCCEEEEcCCCC---CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHH
Confidence 89999999999999999 677999999999999 79999999999999999999999999999999999888999999
Q ss_pred HHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593 86 QHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN 124 (132)
Q Consensus 86 ~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~ 124 (132)
+.++++|+.+..|...+|+|++|.|+|+++|.....+++
T Consensus 205 ~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~ 243 (282)
T COG0421 205 RNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLK 243 (282)
T ss_pred HHHHhhccccccceeccceecCCceEEEEeecCCCCccc
Confidence 999999999999999999999999999999955443443
No 3
>PLN02366 spermidine synthase
Probab=99.96 E-value=3.2e-28 Score=190.43 Aligned_cols=113 Identities=37% Similarity=0.711 Sum_probs=105.4
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
.++|||++++++||++|+++..+++||+||+|+++| .+++..|++.+||+.|+++|+|||++++|++++|.+.+.++
T Consensus 141 ~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp---~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~ 217 (308)
T PLN02366 141 GFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDP---VGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIE 217 (308)
T ss_pred ccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCC---CCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHH
Confidence 478999999999999999873367899999999999 68888999999999999999999999999999999989999
Q ss_pred HHHHHHHhhC-CCceEeEEeccCcCCCceeEEEeecC
Q psy4593 83 NTLQHCASVF-PRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 83 ~~~~~l~~vF-~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
.+.++++++| +.|.+|.+.+|+|++|.|||++||+.
T Consensus 218 ~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 218 DLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 9999999999 68888899999999999999999997
No 4
>PRK00811 spermidine synthase; Provisional
Probab=99.95 E-value=8.6e-28 Score=186.05 Aligned_cols=113 Identities=30% Similarity=0.497 Sum_probs=106.2
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++|||++++++||++|+++ .+++||+||+|++|| .+++..|++.+||+.|+++|+|||++++|+++++.+.+.+..
T Consensus 128 ~~d~rv~v~~~Da~~~l~~-~~~~yDvIi~D~~dp---~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~ 203 (283)
T PRK00811 128 YDDPRVELVIGDGIKFVAE-TENSFDVIIVDSTDP---VGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKD 203 (283)
T ss_pred ccCCceEEEECchHHHHhh-CCCcccEEEECCCCC---CCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHH
Confidence 5799999999999999988 778999999999999 688889999999999999999999999999998888888999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.++++++|++|..|...+|+||+|.|+|++||+..+
T Consensus 204 i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~~~ 240 (283)
T PRK00811 204 MHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKNDD 240 (283)
T ss_pred HHHHHHHHCCCEEEEEeECCcccCchheeEEeecCcc
Confidence 9999999999999999999999999999999999533
No 5
>PLN02823 spermine synthase
Probab=99.95 E-value=3.2e-27 Score=186.60 Aligned_cols=114 Identities=20% Similarity=0.326 Sum_probs=102.0
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHH-HHHHhcCCCcEEEEecCCC--CCCh
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFE-LMSRALRPGGIVCSQAGTL--WYSL 78 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~-~~~~~L~p~Gil~~~~~~~--~~~~ 78 (132)
.++|||++++++||++||++ .+++||+||+|++||. . +++.+|||.|||+ .|+++|+|||++++|++++ +.+.
T Consensus 153 ~~~dprv~v~~~Da~~~L~~-~~~~yDvIi~D~~dp~--~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~ 229 (336)
T PLN02823 153 AFCDKRLELIINDARAELEK-RDEKFDVIIGDLADPV--EGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHK 229 (336)
T ss_pred cccCCceEEEEChhHHHHhh-CCCCccEEEecCCCcc--ccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccH
Confidence 46899999999999999988 7789999999999983 2 5677899999999 9999999999999998774 3466
Q ss_pred HHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 79 DCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 79 ~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.+..+.++++++|++|..|.+.+|+|++ .|+|++||+.+.
T Consensus 230 ~~~~~i~~tl~~vF~~v~~y~~~vPsf~~-~w~f~~aS~~~~ 270 (336)
T PLN02823 230 EVFSSIYNTLRQVFKYVVPYTAHVPSFAD-TWGWVMASDHPF 270 (336)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeecCCCCC-ceEEEEEeCCcc
Confidence 78899999999999999999999999976 699999999754
No 6
>PRK01581 speE spermidine synthase; Validated
Probab=99.93 E-value=8.4e-26 Score=179.34 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=103.6
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+++|||++++++||++|+++ .+++||+||+|++||. ..++..|||.|||+.|+++|+|||++++|+++++.....+.
T Consensus 203 ~~~DpRV~vvi~Da~~fL~~-~~~~YDVIIvDl~DP~--~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~ 279 (374)
T PRK01581 203 AFFDNRVNVHVCDAKEFLSS-PSSLYDVIIIDFPDPA--TELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYW 279 (374)
T ss_pred cCCCCceEEEECcHHHHHHh-cCCCccEEEEcCCCcc--ccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHH
Confidence 57899999999999999988 7789999999999983 34578999999999999999999999999989887777789
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+.+..|.+.+|+|++ .|||++||+.+.
T Consensus 280 ~i~~tL~~af~~v~~y~t~vPsyg~-~WgF~~as~~~~ 316 (374)
T PRK01581 280 SIGNTIEHAGLTVKSYHTIVPSFGT-DWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHhCCceEEEEEecCCCCC-ceEEEEEeCCcc
Confidence 9999999999999999999999965 699999998643
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.93 E-value=4.5e-25 Score=169.66 Aligned_cols=112 Identities=30% Similarity=0.571 Sum_probs=105.2
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
.++++|++++++||++|+++ .+++||+||+|.++| .+++..|++.+||+.++++|+|||++++++++++.....+.
T Consensus 122 ~~~~~~v~i~~~D~~~~l~~-~~~~yDvIi~D~~~~---~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~ 197 (270)
T TIGR00417 122 SYDDPRVDLQIDDGFKFLAD-TENTFDVIIVDSTDP---VGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELIT 197 (270)
T ss_pred cccCCceEEEECchHHHHHh-CCCCccEEEEeCCCC---CCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHH
Confidence 36789999999999999988 678999999999999 67788999999999999999999999999988888888999
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
.+.++++++|++|..|.+.+|+|++|.|+|++||+.
T Consensus 198 ~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 198 DLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 999999999999999999999999999999999993
No 8
>KOG1562|consensus
Probab=99.91 E-value=1.8e-24 Score=166.36 Aligned_cols=124 Identities=34% Similarity=0.561 Sum_probs=115.7
Q ss_pred CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
-.|+++|+.++++||..|++....+.|||||+|+.|| .+|+..||...||+.++++|++||+++++++|.|.+.+.+
T Consensus 170 ~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdp---vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i 246 (337)
T KOG1562|consen 170 CGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDP---VGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYI 246 (337)
T ss_pred cccCCCceEEEeccHHHHHHHhccCCceEEEEecCCc---cchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHH
Confidence 3599999999999999999995578999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee-cCCCccccCCCC
Q psy4593 82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS-QLLKQHANSHVP 128 (132)
Q Consensus 82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as-~~~~~~~~~~~~ 128 (132)
....+..+.+|+.+.+.++.+|+||+|++||.+|| ..++..++.|.+
T Consensus 247 ~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n 294 (337)
T KOG1562|consen 247 KEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGN 294 (337)
T ss_pred HHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCCccCCCC
Confidence 99999999999999999999999999999999999 566766666653
No 9
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=171.23 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=104.9
Q ss_pred CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
.+|+|||++++++||..|++. ..++||+||+|+.||. ......|||.|||..++++|+|+|++++|+++++..++.+
T Consensus 341 ~sf~dpRv~Vv~dDAf~wlr~-a~~~fD~vIVDl~DP~--tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf 417 (508)
T COG4262 341 GSFSDPRVTVVNDDAFQWLRT-AADMFDVVIVDLPDPS--TPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF 417 (508)
T ss_pred CCccCCeeEEEeccHHHHHHh-hcccccEEEEeCCCCC--CcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence 368999999999999999999 7889999999999994 3445799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593 82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~ 119 (132)
.++.+|+|++=-.+..|.+++|+| |.|||++|++.+
T Consensus 418 w~i~aTik~AG~~~~Pyhv~VPTF--GeWGf~l~~~~~ 453 (508)
T COG4262 418 WRIDATIKSAGYRVWPYHVHVPTF--GEWGFILAAPGD 453 (508)
T ss_pred eeehhHHHhCcceeeeeEEecCcc--cccceeeccccc
Confidence 999999999988899999999999 579999999874
No 10
>PRK00536 speE spermidine synthase; Provisional
Probab=99.89 E-value=3.7e-23 Score=158.51 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=88.6
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+|+|||+++++ |+.+..+++|||||+|+. ++++||+.|+++|+|||++++|+++++.+.+.+.
T Consensus 120 ~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~ 182 (262)
T PRK00536 120 VKNNKNFTHAK-----QLLDLDIKKYDLIICLQE------------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQ 182 (262)
T ss_pred hhcCCCEEEee-----hhhhccCCcCCEEEEcCC------------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHH
Confidence 68999999998 344424579999999963 4589999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+.|..|.+.+|+| |.|||++||+..+
T Consensus 183 ~i~~~l~~~F~~v~~y~~~vp~~--g~wgf~~aS~~~~ 218 (262)
T PRK00536 183 NALKNMGDFFSIAMPFVAPLRIL--SNKGYIYASFKTH 218 (262)
T ss_pred HHHHHHHhhCCceEEEEecCCCc--chhhhheecCCCC
Confidence 99999999999999999999999 5899999999744
No 11
>PRK03612 spermidine synthase; Provisional
Probab=99.88 E-value=1.7e-22 Score=167.71 Aligned_cols=111 Identities=16% Similarity=0.356 Sum_probs=101.3
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-CcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
.++|||++++++||++|+++ .+++||+||+|.++| ..+ ..+|||+|||+.++++|+|||++++|+++++.+.+.+
T Consensus 350 ~~~dprv~vi~~Da~~~l~~-~~~~fDvIi~D~~~~---~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~ 425 (521)
T PRK03612 350 ALDDPRVTVVNDDAFNWLRK-LAEKFDVIIVDLPDP---SNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAF 425 (521)
T ss_pred ccCCCceEEEEChHHHHHHh-CCCCCCEEEEeCCCC---CCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHH
Confidence 46789999999999999988 678999999999998 443 4689999999999999999999999998888888889
Q ss_pred HHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 82 GNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 82 ~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
..+.++++++ | .|..|...+|+| |.|||++||+.++
T Consensus 426 ~~i~~~l~~~gf-~v~~~~~~vps~--g~w~f~~as~~~~ 462 (521)
T PRK03612 426 WSIEATLEAAGL-ATTPYHVNVPSF--GEWGFVLAGAGAR 462 (521)
T ss_pred HHHHHHHHHcCC-EEEEEEeCCCCc--chhHHHeeeCCCC
Confidence 9999999999 9 899999999999 5999999999755
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.68 E-value=9.5e-16 Score=117.70 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
.++|++++++||++|+++ ..++||+|++|++++ .+++..+++.+||+.|+++|+|||++++|.. ...+.+..+
T Consensus 115 ~~~rv~v~~~Da~~~l~~-~~~~yD~I~~D~~~~---~~~~~~l~t~efl~~~~~~L~pgGvlvin~~---~~~~~~~~~ 187 (262)
T PRK04457 115 NGERFEVIEADGAEYIAV-HRHSTDVILVDGFDG---EGIIDALCTQPFFDDCRNALSSDGIFVVNLW---SRDKRYDRY 187 (262)
T ss_pred CCCceEEEECCHHHHHHh-CCCCCCEEEEeCCCC---CCCccccCcHHHHHHHHHhcCCCcEEEEEcC---CCchhHHHH
Confidence 368999999999999987 667999999999987 5778899999999999999999999999852 233457888
Q ss_pred HHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
+++++++|+++.+. +|...+ .+..++|++.
T Consensus 188 l~~l~~~F~~~~~~---~~~~~~-~N~v~~a~~~ 217 (262)
T PRK04457 188 LERLESSFEGRVLE---LPAESH-GNVAVFAFKS 217 (262)
T ss_pred HHHHHHhcCCcEEE---EecCCC-ccEEEEEECC
Confidence 99999999975432 243333 3445667664
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.40 E-value=9.3e-13 Score=99.29 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC---CChH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW---YSLD 79 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~---~~~~ 79 (132)
.+.+.+++|+.+|+.+.+++..+++||+||+|.+. .+.+.+|||.+||+.+.|+|+|||-+..++++|. +..+
T Consensus 181 ~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR----fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d 256 (287)
T COG2521 181 ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR----FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD 256 (287)
T ss_pred cccccccEEecccHHHHHhcCCccccceEeeCCCc----cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC
Confidence 45677899999999999999778889999999853 4677899999999999999999999999887775 3567
Q ss_pred HHHHHHHHHHhh-CCCceE
Q psy4593 80 CVGNTLQHCASV-FPRVAY 97 (132)
Q Consensus 80 ~~~~~~~~l~~v-F~~v~~ 97 (132)
..+.+.++|+++ |..|..
T Consensus 257 ~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 257 LPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred hhHHHHHHHHhcCceeeee
Confidence 889999999998 886654
No 14
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=99.01 E-value=6.4e-10 Score=76.78 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=63.4
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++++|+++.|++ -..++|+|+.|.|.| .-...|.|.|+|+.++++++|||++++.+.+ ..+.+.
T Consensus 32 ~L~L~~gDa~~~l~~-l~~~~Da~ylDgFsP----~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ-LDARFDAWYLDGFSP----AKNPELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHH-B-T-EEEEEE-SS-T----TTSGGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHH
T ss_pred EEEEEEcHHHHHHHh-CcccCCEEEecCCCC----cCCcccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHH
Confidence 457899999999998 568999999999999 3344699999999999999999999997543 235556
Q ss_pred HHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593 88 CASV-FPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 88 l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
|.++ |. | ...|-++ +-..++.|++
T Consensus 99 L~~aGF~-v----~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 99 LQQAGFE-V----EKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp HHHCTEE-E----EEEE-ST-TSSEEEEEEC
T ss_pred HHHcCCE-E----EEcCCCC-CcchheEEEc
Confidence 6655 43 2 3466664 3566677765
No 15
>KOG2352|consensus
Probab=98.77 E-value=8.1e-09 Score=84.69 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=84.7
Q ss_pred CCCcEEEEccHHHHhcCC-----CCCeecEEEEcCC--CCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCCh
Q psy4593 6 GYPVLSARQDCTDFMSGP-----VKNMCGLVVSGAA--GPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 78 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~-----~~~~yDvIi~D~~--dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~ 78 (132)
+.|.+++++||..|+++. .+.+||+|++|+. |++...+|+..+.+.+|++.++..|.|.|++++|..+ ++.
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~ 421 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNS 421 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCc
Confidence 348999999999999873 2358999997665 4433348899999999999999999999999999755 456
Q ss_pred HHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 79 DCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 79 ~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+....+...|+++|++.+.+.... +.+-.++|...+.
T Consensus 422 ~~~~~~~~~l~~vf~~l~~~~~~~-----~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 422 SFKDEVLMNLAKVFPQLYHHQLEE-----DVNEILIGQMPPK 458 (482)
T ss_pred chhHHHHHhhhhhhHHHhhhhccC-----CCceeEEeecChh
Confidence 677899999999999988765442 4555566655543
No 16
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.19 E-value=5e-06 Score=71.15 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=57.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++++|+++.+++ -..++|+|+.|.|.| .-...+.|.|+|+.++++++|||.+++.+.. ..+.+.
T Consensus 148 ~l~l~~gd~~~~~~~-~~~~~d~~~lD~FsP----~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a--------~~vr~~ 214 (662)
T PRK01747 148 TLDLWFGDANELLPQ-LDARADAWFLDGFAP----AKNPDMWSPNLFNALARLARPGATLATFTSA--------GFVRRG 214 (662)
T ss_pred EEEEEecCHHHHHHh-ccccccEEEeCCCCC----ccChhhccHHHHHHHHHHhCCCCEEEEeehH--------HHHHHH
Confidence 345888999999998 457899999999999 3445799999999999999999999987522 345556
Q ss_pred HHhh
Q psy4593 88 CASV 91 (132)
Q Consensus 88 l~~v 91 (132)
|+++
T Consensus 215 l~~~ 218 (662)
T PRK01747 215 LQEA 218 (662)
T ss_pred HHHc
Confidence 6654
No 17
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.16 E-value=4.7e-06 Score=55.46 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=45.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC-CCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-VVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~-~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++|++++.+|+.++.+....++||+|+.|.+-... .......-...+|++.+.+.|+|||++++.
T Consensus 49 ~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 49 DDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 46799999999999855467899999999853210 011122335679999999999999999874
No 18
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.09 E-value=1e-05 Score=65.59 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc--cH---HHHHHHHHhcCCCcEEEEecCCCC
Q psy4593 3 SYRGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF--QA---SYFELMSRALRPGGIVCSQAGTLW 75 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~--t~---eF~~~~~~~L~p~Gil~~~~~~~~ 75 (132)
.++..+.+++++|+++||++. ..++||+||+|.+.=. .+... ++ .+ +-...+.++|+|||++++-+++..
T Consensus 264 g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~--r~k~~-~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 264 GLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA--RSKKQ-EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccc--cCccc-chhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 356688999999999999883 2359999999985421 22222 22 22 334668899999999998655554
Q ss_pred CChHHH-HHHHHHHHhh
Q psy4593 76 YSLDCV-GNTLQHCASV 91 (132)
Q Consensus 76 ~~~~~~-~~~~~~l~~v 91 (132)
...+.+ ..+.+.+.+.
T Consensus 341 ~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 341 FSSDLFLEIIARAAAAA 357 (393)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 555444 3333333333
No 19
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.02 E-value=1.2e-05 Score=62.71 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCCCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHH---HHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593 4 YRGYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQAS---YFELMSRALRPGGIVCSQAGTLWYSLD 79 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~e---F~~~~~~~L~p~Gil~~~~~~~~~~~~ 79 (132)
++..+++.+.+|+.+|+++. ...+||+||+|.+. ......-...+ ..+.+.+.|+|||++++-++++....+
T Consensus 171 ~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPs----F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 171 LDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPS----FAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp -CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SS----EESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CCccceEEEecCHHHHHHHHhcCCCCCEEEECCCC----CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 44578999999999999752 34699999999863 22222112344 456678899999999876666666666
Q ss_pred HHHHHHHHHH
Q psy4593 80 CVGNTLQHCA 89 (132)
Q Consensus 80 ~~~~~~~~l~ 89 (132)
.+.++++.-.
T Consensus 247 ~l~~~~~~~a 256 (286)
T PF10672_consen 247 FLLEAVAEAA 256 (286)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 5555444443
No 20
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=2.5e-05 Score=59.76 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=61.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
.++.+..+|.+++... +.||+|++|..|| .++.+.++++|+|||.+++.+.+ -+.....+.
T Consensus 146 d~v~~~~~Dv~~~~~~---~~vDav~LDmp~P------------W~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~ 206 (256)
T COG2519 146 DRVTLKLGDVREGIDE---EDVDAVFLDLPDP------------WNVLEHVSDALKPGGVVVVYSPT----VEQVEKTVE 206 (256)
T ss_pred cceEEEeccccccccc---cccCEEEEcCCCh------------HHHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHH
Confidence 4488889999998776 3999999999999 47899999999999999997533 246788888
Q ss_pred HHHhh-CCCceEeEEe
Q psy4593 87 HCASV-FPRVAYGATC 101 (132)
Q Consensus 87 ~l~~v-F~~v~~~~~~ 101 (132)
.|++. |-+.+.+...
T Consensus 207 ~l~~~g~~~ie~~E~l 222 (256)
T COG2519 207 ALRERGFVDIEAVETL 222 (256)
T ss_pred HHHhcCccchhhheee
Confidence 88887 7777665544
No 21
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.84 E-value=4.3e-05 Score=57.52 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCCcEEEE-ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSAR-QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~-~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+++++++. +|+.+.+++...+.||+|++|+--+ -.++||+.+.+.|+|||++++
T Consensus 110 ~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~----------~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 110 DDRIELLLGGDALDVLSRLLDGSFDLVFIDADKA----------DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cceEEEEecCcHHHHHHhccCCCccEEEEeCChh----------hCHHHHHHHHHHhCCCcEEEE
Confidence 46688999 6999999864568999999998533 148999999999999999997
No 22
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.80 E-value=0.00023 Score=52.12 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=58.6
Q ss_pred CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
++++++.+|+.+++... .+..+|.|+++..|||... .-...+...+|++.+++.|+|||.+.+.+.+ ......+
T Consensus 66 ~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~ 141 (194)
T TIGR00091 66 KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDM 141 (194)
T ss_pred CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHH
Confidence 47999999999887542 3458999999999986211 1123566789999999999999999886433 2345556
Q ss_pred HHHHHhh
Q psy4593 85 LQHCASV 91 (132)
Q Consensus 85 ~~~l~~v 91 (132)
.+.+.+.
T Consensus 142 ~~~~~~~ 148 (194)
T TIGR00091 142 LKVLSEN 148 (194)
T ss_pred HHHHHhC
Confidence 6666654
No 23
>PLN02476 O-methyltransferase
Probab=97.76 E-value=0.00026 Score=55.10 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=44.4
Q ss_pred CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.++|.+. ..+.||.|++|+..+ --.++|+.+.+.|+|||+++..
T Consensus 170 ~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~----------~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 170 HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR----------MYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence 58999999999998652 136899999998543 1378899999999999999874
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.74 E-value=3.1e-05 Score=50.95 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..+|++++.+|+ .+... ..++||+|+.+. .-. .....--..++++.+++.|+|||+++++.
T Consensus 50 ~~~~i~~~~~d~-~~~~~-~~~~~D~v~~~~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 50 LSDRITFVQGDA-EFDPD-FLEPFDLVICSGFTLH----FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TTTTEEEEESCC-HGGTT-TSSCEEEEEECSGSGG----GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCeEEEECcc-ccCcc-cCCCCCEEEECCCccc----cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 468999999999 66555 567899999987 211 11111224678999999999999999863
No 25
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.68 E-value=0.00019 Score=58.45 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=55.3
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccccc-----HHHHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLD 79 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t-----~eF~~~~~~~L~p~Gil~~~~~~~~~~~~ 79 (132)
.+++++.+|+.+++++. ..++||+||+|.+-- ......+.+ .++.+.+.+.|+|||+++.-+++.....+
T Consensus 271 ~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f---~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~ 347 (396)
T PRK15128 271 SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF---VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSD 347 (396)
T ss_pred CcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCC---CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHH
Confidence 57899999999998642 246899999997531 111112221 34556788999999999987666655555
Q ss_pred HHHHHHH-HHHhhCCCceE
Q psy4593 80 CVGNTLQ-HCASVFPRVAY 97 (132)
Q Consensus 80 ~~~~~~~-~l~~vF~~v~~ 97 (132)
.+..++. ...+.-.++.+
T Consensus 348 ~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 348 LFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 4444443 33333334443
No 26
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.65 E-value=0.00056 Score=50.46 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=55.5
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCC---cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPA---ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~---~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
++++++++|+.+.+.. ..+.+||+|++...+|+ .... ..+...+|++.+++.|+|||++++... ......
T Consensus 90 ~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~--~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~ 163 (202)
T PRK00121 90 TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPW--PKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAE 163 (202)
T ss_pred CCEEEEecCHHHHHHHHcCccccceEEEECCCCC--CCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHH
Confidence 5799999999554542 24578999999876664 2211 223468999999999999999998542 334566
Q ss_pred HHHHHHHhh
Q psy4593 83 NTLQHCASV 91 (132)
Q Consensus 83 ~~~~~l~~v 91 (132)
.+.+.+++.
T Consensus 164 ~~~~~~~~~ 172 (202)
T PRK00121 164 YMLEVLSAE 172 (202)
T ss_pred HHHHHHHhC
Confidence 677777664
No 27
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.65 E-value=0.00039 Score=52.60 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=43.0
Q ss_pred CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+++++.+|+.+.|.+. ..++||+|++|+..+ .| .++|+.+.+.|+|||+++.
T Consensus 120 ~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~---------~y-~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 120 HKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP---------NY-VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH---------HH-HHHHHHHHHhcCCCeEEEE
Confidence 68999999999998652 146899999998543 11 3789999999999999986
No 28
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.59 E-value=0.00023 Score=57.75 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=59.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+||..+++...++++|.|++-.+|||.. .....+.+.+|++.++++|+|||.+.+.+.+. ..+..+.+
T Consensus 172 ~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~K-krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e 246 (390)
T PRK14121 172 KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDK-KPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLE 246 (390)
T ss_pred CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccc-cchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHH
Confidence 46999999999877554568999999998899721 22357889999999999999999999875443 33444445
Q ss_pred HHHh
Q psy4593 87 HCAS 90 (132)
Q Consensus 87 ~l~~ 90 (132)
.+.+
T Consensus 247 ~~~~ 250 (390)
T PRK14121 247 LFLK 250 (390)
T ss_pred HHHh
Confidence 5543
No 29
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.56 E-value=0.00011 Score=56.32 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=58.5
Q ss_pred CCCcEEEEccHHH--HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc-CCCcEEEEecCCCCCChHHHH
Q psy4593 6 GYPVLSARQDCTD--FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL-RPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 6 d~rv~v~~~Dg~~--~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L-~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+.++.++..|..+ |-+. .+..+|.|++|+.+|| +....++++| ++||.++..+-+ .+...
T Consensus 91 ~~~v~~~~~Dv~~~g~~~~-~~~~~DavfLDlp~Pw------------~~i~~~~~~L~~~gG~i~~fsP~----ieQv~ 153 (247)
T PF08704_consen 91 DDNVTVHHRDVCEEGFDEE-LESDFDAVFLDLPDPW------------EAIPHAKRALKKPGGRICCFSPC----IEQVQ 153 (247)
T ss_dssp CTTEEEEES-GGCG--STT--TTSEEEEEEESSSGG------------GGHHHHHHHE-EEEEEEEEEESS----HHHHH
T ss_pred CCCceeEecceeccccccc-ccCcccEEEEeCCCHH------------HHHHHHHHHHhcCCceEEEECCC----HHHHH
Confidence 4578999999753 3222 3578999999999996 3478899999 899999997533 35678
Q ss_pred HHHHHHHh-hCCCceEeEEe
Q psy4593 83 NTLQHCAS-VFPRVAYGATC 101 (132)
Q Consensus 83 ~~~~~l~~-vF~~v~~~~~~ 101 (132)
.....|++ -|.++..+.+.
T Consensus 154 ~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEEE
Confidence 88888887 48887776554
No 30
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.55 E-value=0.00025 Score=52.73 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=65.1
Q ss_pred CCcEEEEccHHHH--h----cCCCCCeecEEEEcCCCCCCCCCCC--ccc----ccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 7 YPVLSARQDCTDF--M----SGPVKNMCGLVVSGAAGPGRVVCPA--ESL----FQASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 7 ~rv~v~~~Dg~~~--l----~~~~~~~yDvIi~D~~dp~~~~~~~--~~L----~t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
++++++.+|..+. + +....++||+|++|..-.+ .+.+ ... ...+.++.+.+.|+|||.+++-.
T Consensus 91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~--~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~--- 165 (209)
T PRK11188 91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM--SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV--- 165 (209)
T ss_pred CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc--CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---
Confidence 5688999997663 1 1123578999999974221 1111 000 12578899999999999999832
Q ss_pred CCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee
Q psy4593 75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 75 ~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as 116 (132)
+ ..+.+..++..+++.|..+.++. ...+.....=.|++|-
T Consensus 166 ~-~~~~~~~~l~~l~~~f~~v~~~K-p~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 166 F-QGEGFDEYLREIRSLFTKVKVRK-PDSSRARSREVYIVAT 205 (209)
T ss_pred e-cCcCHHHHHHHHHhCceEEEEEC-CccccccCceeEEEee
Confidence 1 22346778889999999998753 2233333345556553
No 31
>PRK11524 putative methyltransferase; Provisional
Probab=97.53 E-value=0.00043 Score=53.69 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCC-CCCC-CCCcc-------cccHHHHHHHHHhcCCCcEEEEec
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP-GRVV-CPAES-------LFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp-~~~~-~~~~~-------L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
|....-+++.+|+.++++...++++|+|+.|.+=. .... ..... -+-.+++..+++.|+|||.+++..
T Consensus 4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 55677789999999999876678999999997411 0000 11100 112578899999999999999864
No 32
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00051 Score=52.00 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=55.2
Q ss_pred CcEEEEccHHHHhcCCCCC-eecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 8 PVLSARQDCTDFMSGPVKN-MCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.||.+.+....++ +.|-|.+--+|||.-. ---..|.+.+|++.+++.|+|||.+-+-+..
T Consensus 99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 8999999999999886444 9999999999998211 1125899999999999999999999986533
No 33
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.47 E-value=0.00018 Score=55.06 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=44.7
Q ss_pred CCCcEEEEccHHHHhcCCC-----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPV-----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..+++++.+|+.+.|.+.. .++||.|++|+.-. . ..++|+.|.+.|+|||+++.
T Consensus 130 ~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~---------~-Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 130 AHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKD---------N-YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHH---------H-hHHHHHHHHHhcCCCeEEEE
Confidence 4799999999999987631 36899999998532 1 26889999999999999986
No 34
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.46 E-value=0.00012 Score=54.46 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=43.3
Q ss_pred CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.|++++.+||.++|.+. ....||.|++|+.-. --.++|+.+.+.|+|||+++..
T Consensus 96 ~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~----------~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 96 DDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKR----------NYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGG----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEEEeccHhhHHHHHhccCCCceeEEEEccccc----------chhhHHHHHhhhccCCeEEEEc
Confidence 368999999999998763 135899999998532 1257899999999999999974
No 35
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.42 E-value=0.00018 Score=53.06 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 6 GYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
-++++++.+||..++... .+++.|-|.+--+|||.-. -.-..|++.+|++.++++|+|||.+.+.+.. .+.+..
T Consensus 66 l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~ 141 (195)
T PF02390_consen 66 LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEW 141 (195)
T ss_dssp TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHH
T ss_pred ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHH
Confidence 478999999999988764 4589999999999998322 2336899999999999999999999886533 345666
Q ss_pred HHHHHHhh
Q psy4593 84 TLQHCASV 91 (132)
Q Consensus 84 ~~~~l~~v 91 (132)
+.+.+.+.
T Consensus 142 ~~~~~~~~ 149 (195)
T PF02390_consen 142 MLEQFEES 149 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66677664
No 36
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.36 E-value=0.0026 Score=52.37 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=51.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cc---cc----------ccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AE---SL----------FQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~---~L----------~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+..+.. +.+||+|++|++-.. .+. +. .+ ...++++.+.+.|+|||+++..
T Consensus 302 ~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 302 IIETIEGDARSFSP---EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred eEEEEeCccccccc---CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 58899999988752 358999999975321 221 10 01 1346899999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHHhhCCC
Q psy4593 71 AGTLWYSLDCVGNTLQHCASVFPR 94 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~vF~~ 94 (132)
+++.... .-...++.+.+..++
T Consensus 377 tcs~~~~--Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 377 TCSIEPE--ENELQIEAFLQRHPE 398 (445)
T ss_pred eCCCChh--hHHHHHHHHHHhCCC
Confidence 7665432 224445555444443
No 37
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.33 E-value=0.0028 Score=51.97 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=60.7
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEE
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~ 68 (132)
+++++.+|+..+.... ..++||.|++|++-.. .+. +... ...+.++.+.+.|+|||.++
T Consensus 304 ~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 304 SIKILAADSRNLLELKPQWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred eEEEEeCChhhcccccccccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5889999998875321 2468999999985221 221 1100 14688999999999999998
Q ss_pred EecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCC--CceeEEEe
Q psy4593 69 SQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPS--GQIGFVLG 115 (132)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~--~~~~f~~a 115 (132)
..+++. .++.-...+..+.+..|+...-......+|. +.=||.+|
T Consensus 382 ystcsi--~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a 428 (434)
T PRK14901 382 YATCTL--HPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMA 428 (434)
T ss_pred EEeCCC--ChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEE
Confidence 765443 2333344555555555554431100002232 35677776
No 38
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.30 E-value=0.003 Score=51.92 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=50.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-----Ccc-------c-----ccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-----AES-------L-----FQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-----~~~-------L-----~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+.++... -.++||+|++|++-.. .+. ... + ...++++.+.+.|+|||.++..
T Consensus 302 ~v~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 302 NIETKALDARKVHEK-FAEKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred eEEEEeCCcccccch-hcccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 488999999887544 2368999999974211 111 000 0 2357899999999999999876
Q ss_pred cCCCCCChHHHHHHHHHHHhhCC
Q psy4593 71 AGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
+++.+.. .-...+..+.+..+
T Consensus 379 tcs~~~~--Ene~vv~~~l~~~~ 399 (444)
T PRK14902 379 TCTIEKE--ENEEVIEAFLEEHP 399 (444)
T ss_pred cCCCChh--hhHHHHHHHHHhCC
Confidence 5554322 23334444444443
No 39
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.28 E-value=0.00015 Score=52.09 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=48.8
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
++++..|..+.+. ..+||+|+.+.+-- .+.. ....-.+|++.++++|+|||.+.+-.... .. .. ..
T Consensus 83 v~~~~~d~~~~~~---~~~fD~Iv~NPP~~---~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~-~~---~~---~~ 149 (170)
T PF05175_consen 83 VEVVQSDLFEALP---DGKFDLIVSNPPFH---AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH-LG---YE---RL 149 (170)
T ss_dssp EEEEESSTTTTCC---TTCEEEEEE---SB---TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT-SC---HH---HH
T ss_pred ccccccccccccc---ccceeEEEEccchh---cccccchhhHHHHHHHHHHhccCCCEEEEEeecC-CC---hH---HH
Confidence 8899999877654 47999999997521 1221 23456999999999999999885421111 11 11 23
Q ss_pred HHhhCCCceEe
Q psy4593 88 CASVFPRVAYG 98 (132)
Q Consensus 88 l~~vF~~v~~~ 98 (132)
+++.|..|...
T Consensus 150 l~~~f~~~~~~ 160 (170)
T PF05175_consen 150 LKELFGDVEVV 160 (170)
T ss_dssp HHHHHS--EEE
T ss_pred HHHhcCCEEEE
Confidence 88889988763
No 40
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00036 Score=53.54 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=51.5
Q ss_pred CCcEEEEccHHHHhcCCCCC---eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKN---MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~---~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
-.+.++++|+++.+.. -+. ++|+.+.|.|.| .-.| .+++.|+|..++++.++||.+++.+
T Consensus 146 ~~l~l~~gd~~~~~p~-~~~~~~~~dAwflDgFsP---~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 146 LLLGLVIGDAGDGIPP-VPRRRPGTDAWFLDGFRP---VKNP-EMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred heeeeeeeehhhcCCc-ccccccCccEEecCCccc---cCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence 3568999999999988 444 799999999999 3333 8899999999999999999999864
No 41
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.25 E-value=0.0032 Score=48.32 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Ccc-------------cccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AES-------------LFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~-------------L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+++++..|+..+-.. ..+||+|++|++-.. .+. +.. -...+.++.+.+.|+|||.++-
T Consensus 122 ~~v~~~~~D~~~~~~~--~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 122 LNVAVTNFDGRVFGAA--VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred CcEEEecCCHHHhhhh--ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4688999999886433 356999999985321 211 110 1346788999999999999975
Q ss_pred ecCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593 70 QAGTLWYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~vF~~v 95 (132)
-+++ ...+.-..+++.+.+.++..
T Consensus 198 stcs--~~~~Ene~vv~~~l~~~~~~ 221 (264)
T TIGR00446 198 STCS--LEPEENEAVVDYLLEKRPDV 221 (264)
T ss_pred EeCC--CChHHHHHHHHHHHHhCCCc
Confidence 5444 33334455666666666554
No 42
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.23 E-value=0.01 Score=45.54 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCC--CC---------cccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVC--PA---------ESLFQASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~--~~---------~~L~t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
.+|++++.+|.-+|.+.....+||+||+..+=-..+.. +. ..+-=.++.+.++.+|+|||.+++=
T Consensus 94 ~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V---- 169 (248)
T COG4123 94 EERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV---- 169 (248)
T ss_pred hhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE----
Confidence 47999999999999988545679999998642100011 11 1334478999999999999999862
Q ss_pred CCChHHHHHHHHHHHh-hCCCceE
Q psy4593 75 WYSLDCVGNTLQHCAS-VFPRVAY 97 (132)
Q Consensus 75 ~~~~~~~~~~~~~l~~-vF~~v~~ 97 (132)
...+-+..++..+++ .|.--++
T Consensus 170 -~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 170 -HRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred -ecHHHHHHHHHHHHhcCCCceEE
Confidence 334557888999998 4654444
No 43
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.19 E-value=0.0014 Score=56.82 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=44.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc---c-----ccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES---L-----FQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~---L-----~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+|+++ ..++||+||+|.+-- ..... . .-.+.++.+.+.|+|||++++-+
T Consensus 589 ~~v~~i~~D~~~~l~~-~~~~fDlIilDPP~f----~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 589 RQHRLIQADCLAWLKE-AREQFDLIFIDPPTF----SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred cceEEEEccHHHHHHH-cCCCcCEEEECCCCC----CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5899999999999976 467899999997521 11111 1 11456778889999999998754
No 44
>KOG1663|consensus
Probab=97.18 E-value=0.0018 Score=49.06 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe-c---C---C
Q psy4593 5 RGYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ-A---G---T 73 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~-~---~---~ 73 (132)
-+.+++++.++|.+-|.+. ....||.+++|..-. .|. .+|+.+-+.|++||++++. + + .
T Consensus 123 v~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~---------nY~-~y~e~~l~Llr~GGvi~~DNvl~~G~v~~ 192 (237)
T KOG1663|consen 123 VDHKITFIEGPALESLDELLADGESGTFDFAFVDADKD---------NYS-NYYERLLRLLRVGGVIVVDNVLWPGVVAD 192 (237)
T ss_pred ccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchH---------HHH-HHHHHHHhhcccccEEEEeccccCCcccC
Confidence 3578999999999988763 357899999998644 344 8999999999999999974 2 2 1
Q ss_pred CCCChH----HHHHHHHHHHhhCCCceEeEEeccCcCC
Q psy4593 74 LWYSLD----CVGNTLQHCASVFPRVAYGATCVPTYPS 107 (132)
Q Consensus 74 ~~~~~~----~~~~~~~~l~~vF~~v~~~~~~~p~~~~ 107 (132)
+..... ..+..++--+......++|.+.+|.+.|
T Consensus 193 p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG 230 (237)
T KOG1663|consen 193 PDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG 230 (237)
T ss_pred cccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence 211111 2222234444556677788888887643
No 45
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.18 E-value=0.00099 Score=44.17 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
-++++++.+|+.+++.. ..++||+|+++.... . ..++++.+++.|+|||.++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~--------~--~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 68 VSNIVIVEGDAPEALED-SLPEPDRVFIGGSGG--------L--LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCceEEEeccccccChh-hcCCCCEEEECCcch--------h--HHHHHHHHHHHcCCCCEEEEEe
Confidence 35788888998765544 346899999975321 1 2589999999999999999864
No 46
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.17 E-value=0.0054 Score=44.89 Aligned_cols=81 Identities=11% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.+++.++.+|+.+++.. ...+||.|++..... --.++++.+.+.|+|||.+++... ..+....+.
T Consensus 91 ~~~v~~~~~d~~~~l~~-~~~~~D~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~ 155 (198)
T PRK00377 91 LNNIVLIKGEAPEILFT-INEKFDRIFIGGGSE----------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNAL 155 (198)
T ss_pred CCCeEEEEechhhhHhh-cCCCCCEEEECCCcc----------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHH
Confidence 36788999999988866 456899999865322 126789999999999999997532 234467777
Q ss_pred HHHHhh-CCCceEeEEec
Q psy4593 86 QHCASV-FPRVAYGATCV 102 (132)
Q Consensus 86 ~~l~~v-F~~v~~~~~~~ 102 (132)
+.+++. | ++...+..+
T Consensus 156 ~~l~~~g~-~~~~~~~~~ 172 (198)
T PRK00377 156 SALENIGF-NLEITEVII 172 (198)
T ss_pred HHHHHcCC-CeEEEEEeh
Confidence 788664 6 666655544
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.14 E-value=0.003 Score=51.87 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=54.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cc-----------c--ccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ES-----------L--FQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~-----------L--~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+..+-.. .+++||.|++|++-.. .+.. .. | ...+.+..+.+.|+|||+++.-
T Consensus 289 ~v~~~~~Da~~l~~~-~~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 289 SIEIKIADAERLTEY-VQDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred eEEEEECchhhhhhh-hhccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 578999999886433 3467999999985422 2221 10 0 3467789999999999999876
Q ss_pred cCCCCCChHHHHHHHHHHHhhCCCce
Q psy4593 71 AGTLWYSLDCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~vF~~v~ 96 (132)
+++. ..+.-..+++.+.+.+|...
T Consensus 366 TCs~--~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 366 TCTV--TKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred ECCC--ChhhCHHHHHHHHHhCCCcE
Confidence 6553 33334455555555555444
No 48
>PRK13699 putative methylase; Provisional
Probab=97.13 E-value=0.0014 Score=49.43 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=44.6
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCC--C-CC--CCcc---cccHHHHHHHHHhcCCCcEEEEec
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR--V-VC--PAES---LFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~--~-~~--~~~~---L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++.+|+++.+++..+++.|+||.|.+=... . .+ .... -+..++++.++++|+|||++++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 47899999999998788999999999742100 0 00 0011 123467799999999999998753
No 49
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.11 E-value=0.0041 Score=51.79 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc----c-------------cccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE----S-------------LFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~----~-------------L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.+...|+..+-+. ....||.|++|++=.. .+.-. . -...+.++.+.+.|+|||+++-
T Consensus 164 ~nv~v~~~D~~~~~~~-~~~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVY 240 (470)
T PRK11933 164 SNVALTHFDGRVFGAA-LPETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY 240 (470)
T ss_pred CeEEEEeCchhhhhhh-chhhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4578888999986544 4568999999996332 33211 1 1237788899999999999965
Q ss_pred ecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593 70 QAGTLWYSLDCVGNTLQHCASVFPR 94 (132)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~vF~~ 94 (132)
-+++ ...++-..+++.+.+.+++
T Consensus 241 STCT--~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 241 STCT--LNREENQAVCLWLKETYPD 263 (470)
T ss_pred ECCC--CCHHHHHHHHHHHHHHCCC
Confidence 4544 3344455556666555654
No 50
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.11 E-value=0.0043 Score=44.96 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCcEEEEccHHHH-----hc-CCCCCeecEEEEcCCCCCCCCCC--Ccccc----cHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 7 YPVLSARQDCTDF-----MS-GPVKNMCGLVVSGAAGPGRVVCP--AESLF----QASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 7 ~rv~v~~~Dg~~~-----l~-~~~~~~yDvIi~D~~dp~~~~~~--~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
++++++.+|..+. +. ....++||+|+.|...+. .+. ..++- ..++++.+.+.|+|||.+++..
T Consensus 72 ~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~--~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~--- 146 (188)
T TIGR00438 72 ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI--SGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV--- 146 (188)
T ss_pred CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC--CCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE---
Confidence 4677777786432 11 113467999999975321 111 11111 2578999999999999999853
Q ss_pred CCChHHHHHHHHHHHhhCCCceEeE
Q psy4593 75 WYSLDCVGNTLQHCASVFPRVAYGA 99 (132)
Q Consensus 75 ~~~~~~~~~~~~~l~~vF~~v~~~~ 99 (132)
.....+..+++.++..|..+.++.
T Consensus 147 -~~~~~~~~~l~~l~~~~~~~~~~~ 170 (188)
T TIGR00438 147 -FQGEEIDEYLNELRKLFEKVKVTK 170 (188)
T ss_pred -ccCccHHHHHHHHHhhhceEEEeC
Confidence 112235677788888888777644
No 51
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.06 E-value=0.0051 Score=45.28 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=56.6
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
|.=++++++.+||-++|.+ .+ ++|.|++...-. -.+-++.|..+|+|||.+++|+.. .+....
T Consensus 81 fg~~n~~vv~g~Ap~~L~~-~~-~~daiFIGGg~~-----------i~~ile~~~~~l~~ggrlV~nait----lE~~~~ 143 (187)
T COG2242 81 FGVDNLEVVEGDAPEALPD-LP-SPDAIFIGGGGN-----------IEEILEAAWERLKPGGRLVANAIT----LETLAK 143 (187)
T ss_pred hCCCcEEEEeccchHhhcC-CC-CCCEEEECCCCC-----------HHHHHHHHHHHcCcCCeEEEEeec----HHHHHH
Confidence 4558999999999999988 44 899999976422 267799999999999999999744 345667
Q ss_pred HHHHHHhh
Q psy4593 84 TLQHCASV 91 (132)
Q Consensus 84 ~~~~l~~v 91 (132)
+++.+++.
T Consensus 144 a~~~~~~~ 151 (187)
T COG2242 144 ALEALEQL 151 (187)
T ss_pred HHHHHHHc
Confidence 77777765
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.99 E-value=0.0042 Score=45.20 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
++++++.+|+.++. ..++||+|+++.... -.++++.+++.|+|||.+++..+
T Consensus 92 ~~i~~i~~d~~~~~---~~~~fD~I~s~~~~~-----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 92 NNVEIVNGRAEDFQ---HEEQFDVITSRALAS-----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred CCeEEEecchhhcc---ccCCccEEEehhhhC-----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 46899999998852 356899999976311 14688999999999999998743
No 53
>PLN03075 nicotianamine synthase; Provisional
Probab=96.89 E-value=0.0022 Score=50.40 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+|++.+.+|+.+.... ..+||+|++++--. ..... -.+.++.+++.|+|||++++..
T Consensus 176 ~~rV~F~~~Da~~~~~~--l~~FDlVF~~ALi~---~dk~~---k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 176 SKRMFFHTADVMDVTES--LKEYDVVFLAALVG---MDKEE---KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcEEEECchhhcccc--cCCcCEEEEecccc---ccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence 36899999999985322 36799999996322 11111 2788999999999999999875
No 54
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.84 E-value=0.0036 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++.+.+|+.+. .- .+++||+|++...-. ..+. -.++++.++++|+|||.+++-
T Consensus 26 ~~i~~~~~d~~~l-p~-~~~~fD~v~~~~~l~----~~~d---~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 26 KCIEWIEGDAIDL-PF-DDCEFDAVTMGYGLR----NVVD---RLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CceEEEEechhhC-CC-CCCCeeEEEecchhh----cCCC---HHHHHHHHHHHcCcCeEEEEE
Confidence 4789999998873 33 567899999753212 1111 368899999999999999864
No 55
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.83 E-value=0.007 Score=47.03 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=41.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESL--------FQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L--------~t~eF~~~~~~~L~p~Gil~ 68 (132)
.+++++.+|..+.+. +.+||+|++|.+- +.... .|...| +-..+++.+.+.|+|||.++
T Consensus 172 ~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 172 DRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 578999999877653 3579999998641 10000 000111 22567888999999999999
Q ss_pred EecC
Q psy4593 69 SQAG 72 (132)
Q Consensus 69 ~~~~ 72 (132)
+..+
T Consensus 249 ~e~g 252 (284)
T TIGR03533 249 VEVG 252 (284)
T ss_pred EEEC
Confidence 8754
No 56
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.72 E-value=0.018 Score=47.13 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-C-CCcc--c-----------ccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-C-PAES--L-----------FQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~-~~~~--L-----------~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
+++++.+|+.+.......++||.|++|++-...+. . -+.. . ...++++.+.+.|+|||.++..++
T Consensus 294 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 294 KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 36788999976432112467999999985221001 0 0110 0 124689999999999999997765
Q ss_pred CCCC
Q psy4593 73 TLWY 76 (132)
Q Consensus 73 ~~~~ 76 (132)
+...
T Consensus 374 s~~~ 377 (427)
T PRK10901 374 SILP 377 (427)
T ss_pred CCCh
Confidence 5443
No 57
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.71 E-value=0.015 Score=43.19 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++- - .+++||+|+....-.+ .+. ..++++.+.+.|+|||.+++.
T Consensus 96 ~~v~~~~~d~~~~~-~-~~~~fD~V~~~~~l~~----~~~---~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 96 HNVELVHGNAMELP-F-DDNSFDYVTIGFGLRN----VPD---YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CceEEEEechhcCC-C-CCCCccEEEEeccccc----CCC---HHHHHHHHHHHcCcCeEEEEE
Confidence 57889999987742 2 3578999997643221 111 257899999999999999864
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.71 E-value=0.01 Score=44.38 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC-CCCCccc-----------------ccHHHHHHHHHhcCCCcEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV-VCPAESL-----------------FQASYFELMSRALRPGGIV 67 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~-~~~~~~L-----------------~t~eF~~~~~~~L~p~Gil 67 (132)
++++++.+|+.+.+. .++||+|+.+.+- +... ....... .-..|++.+.+.|+|||.+
T Consensus 137 ~~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 137 DNVTFLQSDWFEPLP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred CeEEEEECchhccCc---CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 368999999887542 4689999998641 1000 0011111 1147889999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHh-hCCCceEe
Q psy4593 68 CSQAGTLWYSLDCVGNTLQHCAS-VFPRVAYG 98 (132)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~~ 98 (132)
++..+ +.+. ..+.+.+++ -|..+.++
T Consensus 214 ~~~~~--~~~~---~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 214 LLEIG--YDQG---EAVRALFEAAGFADVETR 240 (251)
T ss_pred EEEEC--ccHH---HHHHHHHHhCCCCceEEE
Confidence 98642 2222 334444444 37766653
No 59
>PRK04266 fibrillarin; Provisional
Probab=96.70 E-value=0.02 Score=43.21 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC-CCC--ChHH
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT-LWY--SLDC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~-~~~--~~~~ 80 (132)
+++..+.+|+..-... .-.++||+|++|..+|+ . ...+++.+++.|+|||.+++.. .+ .+. ....
T Consensus 120 ~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~---~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~ 190 (226)
T PRK04266 120 KNIIPILADARKPERYAHVVEKVDVIYQDVAQPN---Q------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI 190 (226)
T ss_pred CCcEEEECCCCCcchhhhccccCCEEEECCCChh---H------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH
Confidence 5688888897641100 01356999999987662 1 1446889999999999998731 11 111 1233
Q ss_pred HHHHHHHHHhh-CCCceE
Q psy4593 81 VGNTLQHCASV-FPRVAY 97 (132)
Q Consensus 81 ~~~~~~~l~~v-F~~v~~ 97 (132)
+....+.+++. |..+..
T Consensus 191 ~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 191 FKEEIRKLEEGGFEILEV 208 (226)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 45566777765 776654
No 60
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.68 E-value=0.0051 Score=49.88 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.+++++.+|+...+. ..+||+|+++.+ ... ...... ...++++.++++|+|||.+.+=. + .+ ....
T Consensus 281 ~~v~~~~~D~l~~~~---~~~fDlIlsNPPfh~~--~~~~~~-ia~~l~~~a~~~LkpGG~L~iV~-n--r~----l~y~ 347 (378)
T PRK15001 281 DRCEFMINNALSGVE---PFRFNAVLCNPPFHQQ--HALTDN-VAWEMFHHARRCLKINGELYIVA-N--RH----LDYF 347 (378)
T ss_pred ceEEEEEccccccCC---CCCEEEEEECcCcccC--ccCCHH-HHHHHHHHHHHhcccCCEEEEEE-e--cC----cCHH
Confidence 368889999876542 358999999854 220 111212 24689999999999999987532 1 11 1233
Q ss_pred HHHHhhCCCceE
Q psy4593 86 QHCASVFPRVAY 97 (132)
Q Consensus 86 ~~l~~vF~~v~~ 97 (132)
..|++.|+++..
T Consensus 348 ~~L~~~fg~~~~ 359 (378)
T PRK15001 348 HKLKKIFGNCTT 359 (378)
T ss_pred HHHHHHcCCceE
Confidence 667778998875
No 61
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.63 E-value=0.016 Score=48.55 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=58.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.+++++.+|+........+++.|.|.+--+|||.-. ---..|.+++|++.+++.|+|||.+-+.+.. .+.+..++
T Consensus 397 ~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~----~~y~~~~~ 472 (506)
T PRK01544 397 TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI----ENYFYEAI 472 (506)
T ss_pred CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC----HHHHHHHH
Confidence 467888888765555545678999999999998322 2346999999999999999999999876433 33344445
Q ss_pred HHHHh
Q psy4593 86 QHCAS 90 (132)
Q Consensus 86 ~~l~~ 90 (132)
..+.+
T Consensus 473 ~~~~~ 477 (506)
T PRK01544 473 ELIQQ 477 (506)
T ss_pred HHHHh
Confidence 55443
No 62
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.61 E-value=0.00066 Score=44.60 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=40.8
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++++.+|..+++.+....++|+|++|.... .=.....++.+..+|+|||+++..
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~--------~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS--------YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES-----------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC--------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 357999999999998773347999999998532 113466789999999999999863
No 63
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.61 E-value=0.021 Score=41.19 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+...+ .++||+|+.+.... .-.++++.+++.|+|||.++++... .+....+.+
T Consensus 81 ~~i~~~~~d~~~~~----~~~~D~v~~~~~~~----------~~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~ 142 (187)
T PRK08287 81 GNIDIIPGEAPIEL----PGKADAIFIGGSGG----------NLTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALA 142 (187)
T ss_pred CCeEEEecCchhhc----CcCCCEEEECCCcc----------CHHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHH
Confidence 46888888875332 35799999875322 1267899999999999999885311 123455666
Q ss_pred HHHhh-CCCceEeEEec
Q psy4593 87 HCASV-FPRVAYGATCV 102 (132)
Q Consensus 87 ~l~~v-F~~v~~~~~~~ 102 (132)
.+++. |..+......+
T Consensus 143 ~l~~~g~~~~~~~~~~~ 159 (187)
T PRK08287 143 HLEKCGVSELDCVQLQV 159 (187)
T ss_pred HHHHCCCCcceEEEEEE
Confidence 67654 66665544433
No 64
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.50 E-value=0.0064 Score=49.24 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=42.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+..++.. ...+||+|++|.|.. + .+|++.+.+.++++|++.+-
T Consensus 96 ~~~v~~~Da~~~l~~-~~~~fDvIdlDPfGs------~-----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 96 NIEVPNEDAANVLRY-RNRKFHVIDIDPFGT------P-----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred cEEEEchhHHHHHHH-hCCCCCEEEeCCCCC------c-----HHHHHHHHHhcccCCEEEEE
Confidence 578999999999987 567899999997521 1 47999999999999998765
No 65
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.49 E-value=0.01 Score=36.79 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
...+++++.+|..++... ...+||+|+.+..-.. . .-....+++.+.+.|+|+|.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~--~----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 45 LADNVEVLKGDAEELPPE-ADESFDVIISDPPLHH--L----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccceEEEEcChhhhccc-cCCceEEEEEccceee--h----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 456788999999988753 4578999999875321 1 234688899999999999999863
No 66
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.47 E-value=0.0074 Score=45.82 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|..+.... .+++||+|++...=.+ ... ..++++.+.+.|+|||++++-
T Consensus 92 ~~~v~~~~~d~~~l~~~-~~~~fD~V~~~~vl~~--~~~-----~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 92 SDNMQFIHCAAQDIAQH-LETPVDLILFHAVLEW--VAD-----PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ccceEEEEcCHHHHhhh-cCCCCCEEEehhHHHh--hCC-----HHHHHHHHHHHcCCCeEEEEE
Confidence 36789999999886433 4578999997532111 111 157899999999999999864
No 67
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.46 E-value=0.029 Score=44.18 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=42.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC---------CCCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV---------VCPAESL--------FQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~---------~~~~~~L--------~t~eF~~~~~~~L~p~Gil~ 68 (132)
.+++++.+|..+.+. +.+||+|+++.+- +... ..|...| +-..+++.+++.|+|||.++
T Consensus 184 ~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 184 DRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 479999999887663 3579999998531 1000 0111112 23577888999999999999
Q ss_pred EecC
Q psy4593 69 SQAG 72 (132)
Q Consensus 69 ~~~~ 72 (132)
+..+
T Consensus 261 ~E~g 264 (307)
T PRK11805 261 VEVG 264 (307)
T ss_pred EEEC
Confidence 8643
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.38 E-value=0.0072 Score=44.78 Aligned_cols=51 Identities=25% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.+++++.+|+.+.+.. ...||+|+++...+ .. .+.+.+.|+|||.+++..+
T Consensus 128 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~----~~---------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 128 DNVIVIVGDGTQGWEP--LAPYDRIYVTAAGP----KI---------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCeEEEECCcccCCcc--cCCCCEEEEcCCcc----cc---------cHHHHHhcCcCcEEEEEEc
Confidence 5789999999876543 46899999986433 11 1346778999999998643
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=96.38 E-value=0.024 Score=42.19 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=46.2
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCC-------------CcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCP-------------AESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~-------------~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+++++.+|..+++. +++||+|+.+.. .+...... .....-..+++.+.+.|+|||.+++-...
T Consensus 85 ~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 85 DVDVRRGDWARAVE---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred eeEEEECchhhhcc---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 57788899877643 368999999853 22100000 00111356889999999999999864212
Q ss_pred CCCChHHHHHHHHHHHhh
Q psy4593 74 LWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 74 ~~~~~~~~~~~~~~l~~v 91 (132)
. .. ...+++.+++.
T Consensus 162 ~-~~---~~~~~~~l~~~ 175 (223)
T PRK14967 162 L-SG---VERTLTRLSEA 175 (223)
T ss_pred c-cC---HHHHHHHHHHC
Confidence 1 11 34555666653
No 70
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.35 E-value=0.0088 Score=43.86 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=39.7
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.++- . .++||+|+.+.... -.++++.+++.|+|||.+++-.
T Consensus 96 ~i~~~~~d~~~~~-~--~~~fDlV~~~~~~~-----------~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 96 NVTVVHGRAEEFG-Q--EEKFDVVTSRAVAS-----------LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CEEEEeccHhhCC-C--CCCccEEEEccccC-----------HHHHHHHHHHhcCCCeEEEEEe
Confidence 4899999998842 2 46899999875322 1689999999999999999763
No 71
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.24 E-value=0.0035 Score=39.26 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...+++++.+|+.+. .- .+++||+|+.- +... . ---..+++.++|.|+|||.+++
T Consensus 40 ~~~~~~~~~~d~~~l-~~-~~~sfD~v~~~~~~~~---~-----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 40 KNEGVSFRQGDAEDL-PF-PDNSFDVVFSNSVLHH---L-----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TTSTEEEEESBTTSS-SS--TT-EEEEEEESHGGG---S-----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCchheeehHHhC-cc-ccccccccccccceee---c-----cCHHHHHHHHHHHcCcCeEEeC
Confidence 345666888886665 22 56899999864 3222 1 1237889999999999999974
No 72
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.23 E-value=0.024 Score=46.42 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=47.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
+.+|+..........+||.|++|++-.. .+. +... ...+.++.+.+.|+|||.++..+++.
T Consensus 294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 294 KDGDGRGPSQWAENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred eccccccccccccccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 5556543221102467999999975221 221 1111 13678999999999999999876554
Q ss_pred CCChHHHHHHHHHHHhhCCCc
Q psy4593 75 WYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 75 ~~~~~~~~~~~~~l~~vF~~v 95 (132)
.. ..-..+++.+.+.+|..
T Consensus 372 ~~--~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 372 LP--EENSEQIKAFLQEHPDF 390 (426)
T ss_pred Ch--hhCHHHHHHHHHhCCCC
Confidence 32 23344555565566554
No 73
>PTZ00146 fibrillarin; Provisional
Probab=96.18 E-value=0.11 Score=40.90 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=58.9
Q ss_pred CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCCCC--Ch-H
Q psy4593 7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTLWY--SL-D 79 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~~~--~~-~ 79 (132)
+++..+++|+..-. .. ..+.+|+|++|...|+ -...+...+++.|+|+|.+++- ..+... .. .
T Consensus 181 ~NI~~I~~Da~~p~~y~~-~~~~vDvV~~Dva~pd---------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~ 250 (293)
T PTZ00146 181 PNIVPIIEDARYPQKYRM-LVPMVDVIFADVAQPD---------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEV 250 (293)
T ss_pred CCCEEEECCccChhhhhc-ccCCCCEEEEeCCCcc---------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHH
Confidence 67889999986421 11 2357999999996552 1234556789999999999872 222222 22 2
Q ss_pred HHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEe
Q psy4593 80 CVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLG 115 (132)
Q Consensus 80 ~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~a 115 (132)
.+..-++.|++. |..+.. ..++.|..+ -.++++
T Consensus 251 ~f~~ev~~L~~~GF~~~e~--v~L~Py~~~-h~~v~~ 284 (293)
T PTZ00146 251 VFASEVQKLKKEGLKPKEQ--LTLEPFERD-HAVVIG 284 (293)
T ss_pred HHHHHHHHHHHcCCceEEE--EecCCccCC-cEEEEE
Confidence 344445888887 886664 345556443 333444
No 74
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.016 Score=42.74 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCcEEEEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCccccc-HHHHHH--HHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQ-ASYFEL--MSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t-~eF~~~--~~~~L~p~Gil~~~~ 71 (132)
..+.+++..|+.++|+.... +.||+|++|.+=. ..+.. ..-+.. -...|+|+|++++-.
T Consensus 92 ~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~-------~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 92 EGEARVLRNDALRALKQLGTREPFDLVFLDPPYA-------KGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred ccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc-------cchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 47889999999999988422 2499999997422 23332 112222 245699999999854
No 75
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0099 Score=44.50 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
+++.++++||...... ...||+|++.+.-+ ..|.. +.+-|+|||.+++..+
T Consensus 120 ~nV~v~~gDG~~G~~~--~aPyD~I~Vtaaa~----~vP~~---------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 120 ENVTVRHGDGSKGWPE--EAPYDRIIVTAAAP----EVPEA---------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CceEEEECCcccCCCC--CCCcCEEEEeeccC----CCCHH---------HHHhcccCCEEEEEEc
Confidence 4599999999998866 57899999987654 34433 3445999999999765
No 76
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.13 E-value=0.005 Score=45.03 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=39.5
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~ 71 (132)
+++++..|+..++.+. ...+||+|++|.+=. . .++-.+.++.+. ..|+++|++++-.
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~-----~--~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYA-----K--GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STT-----S--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcc-----c--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 6889999999998663 468999999996321 1 122355666665 7899999999864
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.09 E-value=0.08 Score=38.48 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+.+.. ....+|.|++|...+ -.++++.+.+.|+|||.+++..
T Consensus 90 ~~v~~~~~d~~~~~~~-~~~~~d~v~~~~~~~-----------~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 90 KNVEVIEGSAPECLAQ-LAPAPDRVCIEGGRP-----------IKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCeEEEECchHHHHhh-CCCCCCEEEEECCcC-----------HHHHHHHHHHhcCCCeEEEEEe
Confidence 4688999998776544 334578888874222 2688999999999999999875
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.96 E-value=0.08 Score=42.35 Aligned_cols=76 Identities=11% Similarity=-0.036 Sum_probs=47.3
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE-SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~-~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
.+++..|+...+ +++||+|+++.+=. .+... .-...+|++.++++|+|||.+.+-+-. +.. +. ..
T Consensus 247 ~~~~~~D~~~~~----~~~fDlIvsNPPFH---~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~-~l~---y~---~~ 312 (342)
T PRK09489 247 GEVFASNVFSDI----KGRFDMIISNPPFH---DGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA-FLP---YP---DL 312 (342)
T ss_pred CEEEEccccccc----CCCccEEEECCCcc---CCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC-CCC---hH---HH
Confidence 456777875532 46899999986311 11111 112489999999999999998542211 111 11 46
Q ss_pred HHhhCCCceEe
Q psy4593 88 CASVFPRVAYG 98 (132)
Q Consensus 88 l~~vF~~v~~~ 98 (132)
+++.|+++...
T Consensus 313 l~~~Fg~~~~l 323 (342)
T PRK09489 313 LDETFGSHEVL 323 (342)
T ss_pred HHHHcCCeEEE
Confidence 66789988763
No 79
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.96 E-value=0.019 Score=45.56 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=39.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.+.- . .+++||+|+. ++..- ... -.+|++.+++.|+|||.+++.
T Consensus 180 ~~i~~~~~dae~l~-~-~~~~FD~Vi~~~vLeH---v~d-----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 180 STIEYLCTTAEKLA-D-EGRKFDAVLSLEVIEH---VAN-----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred cceeEEecCHHHhh-h-ccCCCCEEEEhhHHHh---cCC-----HHHHHHHHHHHcCCCcEEEEE
Confidence 47889999987753 2 3578999996 33221 111 168999999999999999865
No 80
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.96 E-value=0.016 Score=44.34 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|++-..-. ..+ --.++++.++++|+|||.+++-
T Consensus 127 ~~i~~~~~d~~~l-p~-~~~sfD~V~~~~~l~----~~~---d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 127 KNIEWIEGDATDL-PF-DDCYFDAITMGYGLR----NVV---DRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCeEEEEcccccC-CC-CCCCEeEEEEecccc----cCC---CHHHHHHHHHHHcCcCcEEEEE
Confidence 5788999997663 22 457899998643211 111 1378899999999999998763
No 81
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.96 E-value=0.02 Score=43.29 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+..+.. ..+||+|+....-.+ . .. ...+++.++++|+|||.+++..
T Consensus 76 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~l~~--~--~d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 76 PDCQFVEADIASWQP---PQALDLIFANASLQW--L--PD---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCeEEECchhccCC---CCCccEEEEccChhh--C--CC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 568889999887643 358999998754332 1 11 3678999999999999999864
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.95 E-value=0.0081 Score=46.59 Aligned_cols=54 Identities=26% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|-+++ +.+||.|+ ++.+.. .+. =.-..||+.|++.|+|||.++++.
T Consensus 112 ~~v~v~~~D~~~~-----~~~fD~IvSi~~~Eh---vg~---~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 112 DRVEVRLQDYRDL-----PGKFDRIVSIEMFEH---VGR---KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp STEEEEES-GGG--------S-SEEEEESEGGG---TCG---GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CceEEEEeecccc-----CCCCCEEEEEechhh---cCh---hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 5789999986543 33899998 465533 221 123799999999999999999874
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.92 E-value=0.015 Score=42.86 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=36.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+.+.. ...||+|+++..-+ .+.+.+.+.|+|||.+++..
T Consensus 124 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~-------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 124 GVVEVYHGDGKRGLEK--HAPFDAIIVTAAAS-------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcEEEEECCcccCCcc--CCCccEEEEccCcc-------------hhhHHHHHhcCcCcEEEEEE
Confidence 3689999999876544 46899999986432 11235678899999998853
No 84
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.85 E-value=0.0068 Score=45.90 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++.+.+||-+ |.- .+++||+|++---=. ..+. -...++.++|+|+|||.+++-
T Consensus 98 ~~i~~v~~da~~-lp~-~d~sfD~v~~~fglr----n~~d---~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 98 QNIEFVQGDAED-LPF-PDNSFDAVTCSFGLR----NFPD---RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -SEEEEE-BTTB---S--TT-EEEEEEES-GG----G-SS---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEcCHHH-hcC-CCCceeEEEHHhhHH----hhCC---HHHHHHHHHHHcCCCeEEEEe
Confidence 378999999876 333 568999999642100 1111 256899999999999998863
No 85
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.84 E-value=0.017 Score=42.93 Aligned_cols=50 Identities=22% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+.... ...||+|+++..-+ .. -+.+.+.|+|||.+++..
T Consensus 127 ~~v~~~~gd~~~~~~~--~~~fD~I~~~~~~~----~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 DNVEVIVGDGTLGYEE--NAPYDRIYVTAAGP----DI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCeEEEECCcccCCCc--CCCcCEEEECCCcc----cc---------hHHHHHhhCCCcEEEEEE
Confidence 5789999998765433 46899999986433 11 234566899999999864
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.78 E-value=0.049 Score=41.33 Aligned_cols=84 Identities=24% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC----------CCCCccccc--------HHHHHHHHHhcCCCcE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV----------VCPAESLFQ--------ASYFELMSRALRPGGI 66 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~----------~~~~~~L~t--------~eF~~~~~~~L~p~Gi 66 (132)
..+++++.+|..+.+. ..+||+|+++.+- +... ..+...|+. ..+++.+.+.|+|||.
T Consensus 157 ~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 157 GARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred CCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 3578899999754332 3689999998531 1000 011112222 5677888899999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHh-hCCCceE
Q psy4593 67 VCSQAGTLWYSLDCVGNTLQHCAS-VFPRVAY 97 (132)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~ 97 (132)
+++..+. .+.. .+.+.+++ .|..+..
T Consensus 234 l~~e~g~--~~~~---~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 234 LLLEIGY--DQGE---AVRALLAAAGFADVET 260 (275)
T ss_pred EEEEECc--hHHH---HHHHHHHhCCCceeEE
Confidence 9986422 2222 33334443 4766665
No 87
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.04 Score=44.24 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCC---CCC------------cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVV---CPA------------ESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~---~~~------------~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++.++..|++.+..... ..+||.|++|++=...|+ .|. -.-+..+.++.+.+.|+|||.++--
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 347789999998765522 236999999985322111 111 1224678889999999999999876
Q ss_pred cCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593 71 AGTLWYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~vF~~v 95 (132)
++|.. .+.=..+++.+.+..+.+
T Consensus 288 TCS~~--~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 288 TCSLT--PEENEEVVERFLERHPDF 310 (355)
T ss_pred ccCCc--hhcCHHHHHHHHHhCCCc
Confidence 65543 233345555555554443
No 88
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=95.69 E-value=0.053 Score=42.10 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHH----HHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYF----ELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASVFPRVAYGA 99 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~----~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~vF~~v~~~~ 99 (132)
+.+||+||.|.+|+..-.+.....-...|| .-+++.|+-||-+++- .+..| + .-+-.|.+.|.....+.
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~-----~~Lyel~~~F~~wt~Fc 192 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-N-----AQLYELMGYFSWWTCFC 192 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--------HHHHHHHTTEEEEEEEE
T ss_pred CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-c-----HHHHHHHhhcccEEEEe
Confidence 579999999999875311222222233344 5578999999999986 34443 2 33446778898888777
Q ss_pred EeccCcCCCceeEEEee
Q psy4593 100 TCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 100 ~~~p~~~~~~~~f~~as 116 (132)
+.+=+--+ =+|+++-
T Consensus 193 T~VNtSSS--EaFLigi 207 (299)
T PF06460_consen 193 TAVNTSSS--EAFLIGI 207 (299)
T ss_dssp EGGGTTSS---EEEEEE
T ss_pred cccCcccc--ceeEEee
Confidence 66544323 3555553
No 89
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.67 E-value=0.022 Score=43.14 Aligned_cols=55 Identities=29% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.++. ...+||+|++...=.+ . +. -..+++.++++|+|||.+++..
T Consensus 72 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~--~d---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 72 RGVDARTGDVRDWK---PKPDTDVVVSNAALQW--V--PE---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred cCCcEEEcChhhCC---CCCCceEEEEehhhhh--C--CC---HHHHHHHHHHhCCCCcEEEEEc
Confidence 35788999988763 2468999998654221 1 11 2778999999999999998863
No 90
>PLN02244 tocopherol O-methyltransferase
Probab=95.57 E-value=0.024 Score=45.13 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=39.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+.-..-.+ . +. ...+++.+++.|+|||.+++.
T Consensus 168 ~~v~~~~~D~~~~-~~-~~~~FD~V~s~~~~~h--~--~d---~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 168 DKVSFQVADALNQ-PF-EDGQFDLVWSMESGEH--M--PD---KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CceEEEEcCcccC-CC-CCCCccEEEECCchhc--c--CC---HHHHHHHHHHHcCCCcEEEEE
Confidence 5789999998763 22 4578999997332111 1 11 368999999999999999874
No 91
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.55 E-value=0.029 Score=41.15 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+... .+++||+|+....-.+ .. -...+++.+++.|+|||.+++.
T Consensus 80 ~~~~~~~~d~~~~~~--~~~~fD~vi~~~~l~~--~~-----~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 80 ENVQFICGDAEKLPL--EDSSFDLIVSNLALQW--CD-----DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CCCeEEecchhhCCC--CCCceeEEEEhhhhhh--cc-----CHHHHHHHHHHHcCCCcEEEEE
Confidence 467888888876432 3568999998754221 11 1267899999999999999975
No 92
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.48 E-value=0.087 Score=37.68 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=49.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CC------------CcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CP------------AESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~------------~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.+++++.+|..+.. .++||+|+.+.+- +.... .. .......+|++.+.+.|+|||.+++...
T Consensus 66 ~~~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 66 VGLDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CceEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 35777888866532 3489999988542 10000 00 0111246799999999999999887532
Q ss_pred CCCCChHHHHHHHHHHHhh-CCCceEe
Q psy4593 73 TLWYSLDCVGNTLQHCASV-FPRVAYG 98 (132)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~v-F~~v~~~ 98 (132)
+. .+ ...+.+.+++. |......
T Consensus 142 ~~-~~---~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 142 SL-NG---EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred cc-CC---hHHHHHHHHhCCCeEEEEE
Confidence 21 11 34556666654 6544443
No 93
>KOG1709|consensus
Probab=95.45 E-value=0.032 Score=42.35 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=33.0
Q ss_pred CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 22 GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 22 ~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+..++.||-|..|.|.+. .+ =+.+|++.+-+.|+|+|+++-
T Consensus 164 ~L~d~~FDGI~yDTy~e~-----yE--dl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSEL-----YE--DLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccccCcceeEeechhhH-----HH--HHHHHHHHHhhhcCCCceEEE
Confidence 335577999999999762 11 258999999999999999985
No 94
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.42 E-value=0.02 Score=43.87 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|+.+. ...+++||+|+. ++.-. .... -...+++.+++.|+|||.+++.
T Consensus 98 ~~~i~~~~~D~~~~--~~~~~~FD~V~s~~~l~h---~~~~---d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 98 KNKIEFEANDILKK--DFPENTFDMIYSRDAILH---LSYA---DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCceEEEECCcccC--CCCCCCeEEEEEhhhHHh---CCHH---HHHHHHHHHHHHcCCCcEEEEE
Confidence 45788888887532 113578999997 54311 1100 1367899999999999999875
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.39 E-value=0.037 Score=43.69 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=41.8
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc---cccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES---LFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~---L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.++++.+|+.+ +.. .+++||+|+.|.+=... ...... -.-.++++.+++.|+|||.++...
T Consensus 231 ~i~~~~~D~~~-l~~-~~~~~D~Iv~dPPyg~~-~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 231 DFFVKRGDATK-LPL-SSESVDAIATDPPYGRS-TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCeEEecchhc-CCc-ccCCCCEEEECCCCcCc-ccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 47889999887 333 35789999999642100 111111 124789999999999999998764
No 96
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.35 E-value=0.049 Score=44.25 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=39.5
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+.+++.. .++||+|++|.+ . . ..+|++.+.+.++++|++.+-
T Consensus 108 ~~~v~~~Da~~~l~~--~~~fD~V~lDP~-G-----s-----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 108 NEKVFNKDANALLHE--ERKFDVVDIDPF-G-----S-----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ceEEEhhhHHHHHhh--cCCCCEEEECCC-C-----C-----cHHHHHHHHHHhcCCCEEEEE
Confidence 456899999999864 356999999975 1 1 257889988889999999764
No 97
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.32 E-value=0.068 Score=39.59 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=39.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~ 71 (132)
.+++++.+|+.+++.. ...+||+|++|.+-. .+ +..+-++.+.+. |+|+|++.+-.
T Consensus 102 ~~v~~~~~D~~~~l~~-~~~~fDlV~~DPPy~---~g-----~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 102 GNARVVNTNALSFLAQ-PGTPHNVVFVDPPFR---KG-----LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CcEEEEEchHHHHHhh-cCCCceEEEECCCCC---CC-----hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 3689999999999865 445799999997521 11 234445555553 78999988753
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.19 E-value=0.058 Score=39.25 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=39.5
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.+++++.+|..+... .+++||+|+....-. ..+ -...+++.+++.|+|||.+++-
T Consensus 87 ~~~i~~~~~d~~~~~~--~~~~~D~i~~~~~~~----~~~---~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 87 PLNIEFIQADAEALPF--EDNSFDAVTIAFGLR----NVT---DIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CCCceEEecchhcCCC--CCCcEEEEEEeeeeC----Ccc---cHHHHHHHHHHHcCCCcEEEEE
Confidence 4578889999887542 346899998643211 111 1367899999999999999863
No 99
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.14 E-value=0.04 Score=43.10 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=40.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++..|=+.+ .++||-|+ ++.+.. .+.- .-.+||+.+++.|+|||.++.++
T Consensus 122 ~~v~v~l~d~rd~-----~e~fDrIvSvgmfEh---vg~~---~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 122 DNVEVRLQDYRDF-----EEPFDRIVSVGMFEH---VGKE---NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccEEEecccccc-----ccccceeeehhhHHH---hCcc---cHHHHHHHHHhhcCCCceEEEEE
Confidence 4777888885543 23499998 577765 3432 24899999999999999999885
No 100
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.10 E-value=0.31 Score=39.04 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=51.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-CCC--CCC-----
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTL--WYS----- 77 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-~~~--~~~----- 77 (132)
.++++++.+|+.+. .- .++.||+|+....-. ..+. ....++.+++.|+|||.+++-. ..+ |..
T Consensus 159 ~~~i~~i~gD~e~l-p~-~~~sFDvVIs~~~L~---~~~d----~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~ 229 (340)
T PLN02490 159 LKECKIIEGDAEDL-PF-PTDYADRYVSAGSIE---YWPD----PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFAD 229 (340)
T ss_pred ccCCeEEeccHHhC-CC-CCCceeEEEEcChhh---hCCC----HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhh
Confidence 35788888998763 22 357899999743211 0111 1467999999999999987631 111 110
Q ss_pred ----hHHHHHHHHHHHhh-CCCceE
Q psy4593 78 ----LDCVGNTLQHCASV-FPRVAY 97 (132)
Q Consensus 78 ----~~~~~~~~~~l~~v-F~~v~~ 97 (132)
.....++.+.++++ |..+.+
T Consensus 230 ~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 230 VWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhccCCCHHHHHHHHHHCCCeEEEE
Confidence 01235666777776 888776
No 101
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.10 E-value=0.022 Score=39.62 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=41.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc-cHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF-QASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~-t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+ +.+.-.++||+|+....-. .+- ..++++.+++.|+++|++++.
T Consensus 54 ~ni~~~~~d~~~-l~~~~~~~~D~I~~~~~l~--------~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 54 DNIEFIQGDIED-LPQELEEKFDIIISNGVLH--------HFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp TTEEEEESBTTC-GCGCSSTTEEEEEEESTGG--------GTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccceEEeehhc-cccccCCCeeEEEEcCchh--------hccCHHHHHHHHHHHcCCCcEEEEE
Confidence 489999999988 6641127899999885421 111 247899999999999999875
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.09 E-value=0.12 Score=40.07 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=40.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESL--------FQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L--------~t~eF~~~~~~~L~p~Gil~ 68 (132)
.+++++.+|..+.+.. .+||+|+.+.+- +.... .|...| +-..+++.+.+.|+|||+++
T Consensus 165 ~~v~~~~~d~~~~~~~---~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 165 HRVEFIQSNLFEPLAG---QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred CcEEEEECchhccCcC---CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 4689999998765432 379999998532 11000 011111 34567788889999999999
Q ss_pred EecC
Q psy4593 69 SQAG 72 (132)
Q Consensus 69 ~~~~ 72 (132)
+-.+
T Consensus 242 ~e~g 245 (284)
T TIGR00536 242 CEIG 245 (284)
T ss_pred EEEC
Confidence 8654
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.07 E-value=0.06 Score=41.09 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=47.2
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCC----------CCCcccc--------cHHHHHHHHHhcCCCcEEEE
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVV----------CPAESLF--------QASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~----------~~~~~L~--------t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++.+|..+++.....++||+|++|.+ -|.... .+...|. -.++++.+.+.|+|||.+++
T Consensus 135 ~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 135 GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5788899888775422357999999974 221000 0011121 35788888899999999987
Q ss_pred ecCCCCCChHHHHHHHHHHHh
Q psy4593 70 QAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~ 90 (132)
-.+. .....+...+++
T Consensus 215 ~~~~-----~~~~~v~~~l~~ 230 (251)
T TIGR03704 215 ETSE-----RQAPLAVEAFAR 230 (251)
T ss_pred EECc-----chHHHHHHHHHH
Confidence 4322 123456666655
No 104
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.06 E-value=0.068 Score=40.76 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+ +.- .++.||+|+....-. ..+. ....++.+.+.|+|||.+++.
T Consensus 128 ~~v~~~~~d~~~-l~~-~~~~fD~Vi~~~v~~---~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 128 TNVEFRLGEIEA-LPV-ADNSVDVIISNCVIN---LSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CCEEEEEcchhh-CCC-CCCceeEEEEcCccc---CCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 477888888654 322 356899999875422 1111 257899999999999999873
No 105
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.04 E-value=0.0064 Score=39.46 Aligned_cols=52 Identities=29% Similarity=0.362 Sum_probs=36.8
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEE-cC-CCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GA-AGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
..+++.+.+|+.++- . ..++||+|+. .+ ... ..+ ---..+++.+.++|+|||
T Consensus 48 ~~~~~~~~~D~~~l~-~-~~~~~D~v~~~~~~~~~---~~~---~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 GPKVRFVQADARDLP-F-SDGKFDLVVCSGLSLHH---LSP---EELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTTSEEEESCTTCHH-H-HSSSEEEEEE-TTGGGG---SSH---HHHHHHHHHHHHTEEEEE
T ss_pred CCceEEEECCHhHCc-c-cCCCeeEEEEcCCccCC---CCH---HHHHHHHHHHHHHhCCCC
Confidence 458899999998753 3 4579999998 44 211 111 112788999999999998
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=94.91 E-value=0.15 Score=36.18 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=39.7
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCC---------CC----CCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGR---------VV----CPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~---------~~----~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++.++.+|..+.+.. .+||+|+.+..- +.. .. +.........|++.+.+.|+|||.+++...+
T Consensus 74 ~~~~~~~d~~~~~~~---~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 74 GVEVIRSDLFEPFRG---DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ceEEEeccccccccc---cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 388888887664433 489999987531 100 00 0000112467899999999999998876433
No 107
>KOG4300|consensus
Probab=94.89 E-value=0.086 Score=39.85 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCcE-EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVL-SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~-v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++. .+++||..--+- ++.+||+|+.-+- .|. .---.+-++.+++.|+|||++...
T Consensus 125 ~~~~~fvva~ge~l~~l-~d~s~DtVV~Tlv-----LCS--ve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 125 LQVERFVVADGENLPQL-ADGSYDTVVCTLV-----LCS--VEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred cceEEEEeechhcCccc-ccCCeeeEEEEEE-----Eec--cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4554 788998885433 7899999996432 111 111267799999999999999864
No 108
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=94.88 E-value=0.041 Score=40.55 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++++..|..+.. .+++||+|+.-..-. ... . ..++++.+++.|+|||.+++.
T Consensus 49 ~~~i~~~~~d~~~~~---~~~~fD~I~~~~~l~----~~~-~--~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 49 QGRIRIFYRDSAKDP---FPDTYDLVFGFEVIH----HIK-D--KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CcceEEEecccccCC---CCCCCCEeehHHHHH----hCC-C--HHHHHHHHHHHcCCCCEEEEE
Confidence 356788888864431 235799998532111 111 1 378999999999999999875
No 109
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=94.86 E-value=0.025 Score=42.12 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=54.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-----CCCCCChHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-----GTLWYSLDC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-----~~~~~~~~~ 80 (132)
++++++..|--++. .+++||+|++- +.-- ..+...| ..+.+.+.++|+|||.+++-. +.-|.+.--
T Consensus 89 ~~V~~~~~dvp~~~---P~~~FDLIV~SEVlYY---L~~~~~L--~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~g 160 (201)
T PF05401_consen 89 PHVEWIQADVPEFW---PEGRFDLIVLSEVLYY---LDDAEDL--RAALDRLVAALAPGGHLVFGHARDANCRRWGHAAG 160 (201)
T ss_dssp SSEEEEES-TTT------SS-EEEEEEES-GGG---SSSHHHH--HHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--
T ss_pred CCeEEEECcCCCCC---CCCCeeEEEEehHhHc---CCCHHHH--HHHHHHHHHHhCCCCEEEEEEecCCcccccCcccc
Confidence 78999999976653 55899999963 2211 1111111 347889999999999999732 223445445
Q ss_pred HHHHHHHHHhhCCCceEeEEec
Q psy4593 81 VGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
...+...+++.|-.|.-..+.-
T Consensus 161 a~tv~~~~~~~~~~~~~~~~~~ 182 (201)
T PF05401_consen 161 AETVLEMLQEHLTEVERVECRG 182 (201)
T ss_dssp HHHHHHHHHHHSEEEEEEEEE-
T ss_pred hHHHHHHHHHHhhheeEEEEcC
Confidence 6788899999998887655543
No 110
>KOG1271|consensus
Probab=94.80 E-value=0.075 Score=39.47 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=37.3
Q ss_pred cEEEEccHHHHhcCCCCCeecEEE----EcCCC--CCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVV----SGAAG--PGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi----~D~~d--p~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
++.-..|-..= .. ...+||+|+ .|+-. | +.+...+ .-+...+.+.|+|||++++-+++.
T Consensus 120 I~f~q~DI~~~-~~-~~~qfdlvlDKGT~DAisLs~---d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 120 IRFQQLDITDP-DF-LSGQFDLVLDKGTLDAISLSP---DGPVGRL--VVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeEEEeeccCC-cc-cccceeEEeecCceeeeecCC---CCcccce--eeehhhHhhccCCCcEEEEEecCc
Confidence 45555553321 11 346899988 34432 2 3344444 556788999999999999987664
No 111
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.79 E-value=0.25 Score=37.73 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=38.5
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++.+.+||-+ |-= .+++||++.+.-.=. ..+ --...++.++|.|+|||.+++.
T Consensus 103 i~fv~~dAe~-LPf-~D~sFD~vt~~fglr----nv~---d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 103 VEFVVGDAEN-LPF-PDNSFDAVTISFGLR----NVT---DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eEEEEechhh-CCC-CCCccCEEEeeehhh----cCC---CHHHHHHHHHHhhcCCeEEEEE
Confidence 7889999877 443 689999999753211 001 1267799999999999988875
No 112
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.52 E-value=0.047 Score=34.99 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=19.9
Q ss_pred CeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q psy4593 26 NMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIV 67 (132)
Q Consensus 26 ~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil 67 (132)
++||+|+. .+..- . . --.++++.+++.|+|||++
T Consensus 65 ~~fD~V~~~~vl~~---l---~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHH---L---E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--------S---HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhh---h---h--hHHHHHHHHHHHcCCCCCC
Confidence 59999995 44332 2 1 2368999999999999986
No 113
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.42 E-value=0.028 Score=46.54 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.+|+|+.+|.+++ + .+++.|+||+..-.. .+ .++ .+.|.+....+-|+|||++.-+
T Consensus 240 ~~~V~vi~~d~r~v--~-lpekvDIIVSElLGs---fg-~nE-l~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 240 GDKVTVIHGDMREV--E-LPEKVDIIVSELLGS---FG-DNE-LSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp TTTEEEEES-TTTS--C-HSS-EEEEEE---BT---TB-TTT-SHHHHHHHGGGGEEEEEEEESS
T ss_pred CCeEEEEeCcccCC--C-CCCceeEEEEeccCC---cc-ccc-cCHHHHHHHHhhcCCCCEEeCc
Confidence 46799999998886 2 346999999987643 23 333 5688899999999999999743
No 114
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.41 E-value=0.064 Score=43.54 Aligned_cols=53 Identities=13% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.++++...||...+.. ...+||+|=+|.|-. | .+|++.+-++++.||++.+-
T Consensus 101 ~~~~~v~~~DAn~ll~~-~~~~fD~IDlDPfGS------p-----~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 101 DERIEVSNMDANVLLYS-RQERFDVIDLDPFGS------P-----APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp GCCEEEEES-HHHHHCH-STT-EEEEEE--SS-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEehhhHHHHhhh-ccccCCEEEeCCCCC------c-----cHhHHHHHHHhhcCCEEEEe
Confidence 34889999999999964 568999999998742 2 68999999999999999865
No 115
>PLN02672 methionine S-methyltransferase
Probab=94.36 E-value=0.37 Score=44.11 Aligned_cols=91 Identities=14% Similarity=-0.001 Sum_probs=55.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-C------------------CCccccc-----------HHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-C------------------PAESLFQ-----------ASYFE 55 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~------------------~~~~L~t-----------~eF~~ 55 (132)
.|++++.+|..+.+.. ...+||+||...+- +.... . +...|+. +...+
T Consensus 184 ~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~ 262 (1082)
T PLN02672 184 DRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 262 (1082)
T ss_pred ccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHH
Confidence 4799999999988754 33479999987641 11000 0 1223433 45556
Q ss_pred HHHHhcCCCcEEEEecCCCCCChHHHH-HHHHHHHhhCCCceEeEEec
Q psy4593 56 LMSRALRPGGIVCSQAGTLWYSLDCVG-NTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 56 ~~~~~L~p~Gil~~~~~~~~~~~~~~~-~~~~~l~~vF~~v~~~~~~~ 102 (132)
.+.++|+|||++++..+. .+.+.+. ++++. ..|..+..|+..+
T Consensus 263 ~a~~~L~pgG~l~lEiG~--~q~~~v~~~l~~~--~gf~~~~~~~~~~ 306 (1082)
T PLN02672 263 EGISVIKPMGIMIFNMGG--RPGQAVCERLFER--RGFRITKLWQTKI 306 (1082)
T ss_pred HHHHhccCCCEEEEEECc--cHHHHHHHHHHHH--CCCCeeEEeeehh
Confidence 677799999999987543 2223233 23332 3488888777653
No 116
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.11 Score=41.03 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=42.2
Q ss_pred CeecEEEEcCCCCCCCCCC-CcccccHHHHHHHHHhcCCCcEE--EEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 26 NMCGLVVSGAAGPGRVVCP-AESLFQASYFELMSRALRPGGIV--CSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~-~~~L~t~eF~~~~~~~L~p~Gil--~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
++||+||+..+=. .+. ...-...++++..+++|++||-+ |.|. .+ .....|+++|.+|+..
T Consensus 223 ~kfd~IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~-~l--------~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 223 GKFDLIISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWIVANR-HL--------PYEKKLKELFGNVEVL 286 (300)
T ss_pred ccccEEEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC-CC--------ChHHHHHHhcCCEEEE
Confidence 4899999987522 121 12233569999999999999975 4562 21 2346889999998873
No 117
>PRK08317 hypothetical protein; Provisional
Probab=94.32 E-value=0.095 Score=38.29 Aligned_cols=56 Identities=25% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|....- - ...+||+|+....-. .... ...+++.++++|+|||.+++-
T Consensus 68 ~~~~~~~~~d~~~~~-~-~~~~~D~v~~~~~~~----~~~~---~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 68 GPNVEFVRGDADGLP-F-PDGSFDAVRSDRVLQ----HLED---PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCceEEEecccccCC-C-CCCCceEEEEechhh----ccCC---HHHHHHHHHHHhcCCcEEEEE
Confidence 456788888875532 2 346899999763211 1111 367899999999999998763
No 118
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.32 E-value=0.14 Score=37.62 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=40.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++..+|+.++... ...+||+|++.-.-.. .. -..++++.+++.|+|||.+++.
T Consensus 94 ~~~~~~~d~~~~~~~-~~~~~D~i~~~~~l~~--~~-----~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 94 KIEYRCTSVEDLAEK-GAKSFDVVTCMEVLEH--VP-----DPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred ceEEEeCCHHHhhcC-CCCCccEEEehhHHHh--CC-----CHHHHHHHHHHhcCCCcEEEEE
Confidence 578888999888765 4578999997532110 11 1257899999999999998764
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.24 E-value=0.23 Score=38.52 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=44.2
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
++.++.+|... . .+++||+|+.+..-. . -.+++..+++.|+|||.+++-. ........+.+.
T Consensus 210 ~~~~~~~~~~~---~-~~~~fDlVvan~~~~--------~--l~~ll~~~~~~LkpgG~li~sg----i~~~~~~~v~~~ 271 (288)
T TIGR00406 210 RLQVKLIYLEQ---P-IEGKADVIVANILAE--------V--IKELYPQFSRLVKPGGWLILSG----ILETQAQSVCDA 271 (288)
T ss_pred ceEEEeccccc---c-cCCCceEEEEecCHH--------H--HHHHHHHHHHHcCCCcEEEEEe----CcHhHHHHHHHH
Confidence 45555555211 1 346899999875311 1 1578999999999999998742 122334566666
Q ss_pred HHhhCCCce
Q psy4593 88 CASVFPRVA 96 (132)
Q Consensus 88 l~~vF~~v~ 96 (132)
+++.|.-+.
T Consensus 272 ~~~~f~~~~ 280 (288)
T TIGR00406 272 YEQGFTVVE 280 (288)
T ss_pred HHccCceee
Confidence 666665443
No 120
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.23 E-value=0.073 Score=39.14 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.+++++.+|+.+.+.. .+.||+|+++..-+ .. -+.+.+.|+|||.+++..+
T Consensus 126 ~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~----~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 HNVSVRHGDGWKGWPA--YAPFDRILVTAAAP----EI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CceEEEECCcccCCCc--CCCcCEEEEccCch----hh---------hHHHHHhcCCCcEEEEEEc
Confidence 3588899998654332 46899999986322 11 2456788999999998643
No 121
>KOG1661|consensus
Probab=94.14 E-value=0.076 Score=40.07 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
-|+.+++.++++||+.--.. ..+||.|.+.+..+ .. -+.+.+-|+++|-+++..
T Consensus 140 ~~~~~~l~ivvGDgr~g~~e--~a~YDaIhvGAaa~----~~---------pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGRKGYAE--QAPYDAIHVGAAAS----EL---------PQELLDQLKPGGRLLIPV 193 (237)
T ss_pred hhccCceEEEeCCccccCCc--cCCcceEEEccCcc----cc---------HHHHHHhhccCCeEEEee
Confidence 46789999999999985444 68999999987655 12 345556688888888754
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=94.11 E-value=0.19 Score=39.22 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=49.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--cc--cc-----------cHHHHHHHHHhcCCCcEEEE-e
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--ES--LF-----------QASYFELMSRALRPGGIVCS-Q 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~~--L~-----------t~eF~~~~~~~L~p~Gil~~-~ 70 (132)
++++++.+|++++... .+||+||.+.+=.. .... .. -+ =.+|+......|+|+|.+.. +
T Consensus 109 ~~v~~v~~D~~e~~~~---~kFDlIIsNPPF~~--l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 109 PEAEWITSDVFEFESN---EKFDVVISNPPFGK--INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCEEEECchhhhccc---CCCcEEEEcCCccc--cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 5789999999998633 58999999764211 1110 11 11 25788999999999997654 4
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy4593 71 AGTLWYSLDCVGNTLQHCA 89 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~ 89 (132)
.+.+.++.++-..-++++.
T Consensus 184 ss~~~y~~sl~~~~y~~~l 202 (279)
T PHA03411 184 SGRPYYDGTMKSNKYLKWS 202 (279)
T ss_pred eccccccccCCHHHHHHHH
Confidence 5556665544444443333
No 123
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.07 E-value=0.087 Score=40.28 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=27.8
Q ss_pred CCeecEEEE-c----CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 25 KNMCGLVVS-G----AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 25 ~~~yDvIi~-D----~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.++||||++ + +.|| ..|.+.|.+.++|||++..-.
T Consensus 122 ~~~FDvV~cmEVlEHv~dp------------~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDP------------ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred CCCccEEEEhhHHHccCCH------------HHHHHHHHHHcCCCcEEEEec
Confidence 379999995 3 3333 559999999999999998754
No 124
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.05 E-value=0.11 Score=38.04 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=34.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
+++.++.|..++ . .+++||+|+.-..-. ...+ --...+++.+++.|+|||.++
T Consensus 79 ~v~~~~~d~~~~--~-~~~~fD~I~~~~~~~---~~~~--~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 79 NLHTAVVDLNNL--T-FDGEYDFILSTVVLM---FLEA--KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred cceEEecChhhC--C-cCCCcCEEEEecchh---hCCH--HHHHHHHHHHHHHcCCCcEEE
Confidence 477888887654 2 235799998642211 0111 123689999999999999854
No 125
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.05 E-value=0.15 Score=37.86 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=39.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++..|..++... ..++||+|+....=. ..+ -..++++.+.+.|+|||.+++.
T Consensus 96 ~~~~~~~~~~~~~~~-~~~~fD~Ii~~~~l~----~~~---~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 96 KIDYRQTTAEELAAE-HPGQFDVVTCMEMLE----HVP---DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ceEEEecCHHHhhhh-cCCCccEEEEhhHhh----ccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 567788888887655 457899999753211 111 1257899999999999999875
No 126
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.02 E-value=0.05 Score=40.42 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=34.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
.++.++.+|+++++. ...+|-||.+++.. +.+|+..+.++++++|++.
T Consensus 152 ~~i~~~~~D~~~~~~---~~~~drvim~lp~~-----------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 152 NRIEVINGDAREFLP---EGKFDRVIMNLPES-----------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TTEEEEES-GGG------TT-EEEEEE--TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred CeEEEEcCCHHHhcC---ccccCEEEECChHH-----------HHHHHHHHHHHhcCCcEEE
Confidence 578899999999987 47899999988432 4689999999999999974
No 127
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.86 E-value=0.22 Score=37.44 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=37.1
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++.+|+... .- .+++||+|+....-.+ .. . -.++++.+++.|+|||.++..
T Consensus 87 ~~~~~~d~~~~-~~-~~~~fD~V~s~~~l~~--~~---d--~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 87 DHYLAGDIESL-PL-ATATFDLAWSNLAVQW--CG---N--LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCEEEcCcccC-cC-CCCcEEEEEECchhhh--cC---C--HHHHHHHHHHHcCCCeEEEEE
Confidence 45678887553 22 4568999998654221 11 1 268899999999999999875
No 128
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.84 E-value=0.083 Score=43.55 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=39.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+...-....+++||+|++...-.+ . +... -.++++.+++.|+|||++++.
T Consensus 83 ~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~--l-~~~~--~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 83 KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY--L-SDKE--VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CceEEEEecccccccCCCCCCEEEEehhhhHHh--C-CHHH--HHHHHHHHHHhcCCCeEEEEE
Confidence 578889999864211114578999998653210 0 1100 268999999999999999874
No 129
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.76 E-value=0.17 Score=37.19 Aligned_cols=55 Identities=18% Similarity=0.045 Sum_probs=38.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+++++++.+|..... . ....||+|+....-. ..+ -..++++.+.+.|+|||.+++
T Consensus 102 ~~~~~~~~~d~~~~~-~-~~~~~D~I~~~~~l~----~~~---~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 102 SGNVEFVQGDAEALP-F-PDNSFDAVTIAFGLR----NVP---DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ccCeEEEecccccCC-C-CCCCccEEEEecccc----cCC---CHHHHHHHHHHhccCCcEEEE
Confidence 356888888877643 2 356899998743211 111 136889999999999998875
No 130
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.68 E-value=0.053 Score=40.50 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+||..-+.. ...||.|++.+.-+ ..+ . ...+.|++||.+++..
T Consensus 123 ~nv~~~~gdg~~g~~~--~apfD~I~v~~a~~----~ip-----~----~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 123 DNVEVVVGDGSEGWPE--EAPFDRIIVTAAVP----EIP-----E----ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp HSEEEEES-GGGTTGG--G-SEEEEEESSBBS----S-------H----HHHHTEEEEEEEEEEE
T ss_pred CceeEEEcchhhcccc--CCCcCEEEEeeccc----hHH-----H----HHHHhcCCCcEEEEEE
Confidence 4789999999876654 45799999987533 222 2 2444599999999864
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.57 E-value=0.26 Score=36.05 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=38.6
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~ 71 (132)
.+++++.+|+.++++.. ....||+|+.|.+=. . . +..+-++.+.+ .|+++|+++.-.
T Consensus 99 ~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~-----~--~-~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 99 EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF-----N--G-ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred ccEEEEehhHHHHHHHhhccCCCceEEEECcCCC-----C--C-cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 47899999999998642 123589999997422 1 1 23444555543 699999999753
No 132
>PRK06922 hypothetical protein; Provisional
Probab=93.53 E-value=0.54 Score=40.93 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=40.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCC--C---CC-CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRV--V---CP-AESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~--~---~~-~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+...-....+++||+|+....-.++. . +. -..-.-..+++.++++|+|||.+++.-
T Consensus 467 ~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 467 RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 46788889988732112356899998643110000 0 00 011134789999999999999999864
No 133
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.38 E-value=0.25 Score=37.65 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=50.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
|+++...+|.+.| + .+...|+|+..+.=.| .+.+ .+.|..+...|+|||++++|--. +.+.+.++.+..
T Consensus 75 p~~~f~~aDl~~w--~-p~~~~dllfaNAvlqW----lpdH---~~ll~rL~~~L~Pgg~LAVQmPd-N~depsH~~mr~ 143 (257)
T COG4106 75 PDATFEEADLRTW--K-PEQPTDLLFANAVLQW----LPDH---PELLPRLVSQLAPGGVLAVQMPD-NLDEPSHRLMRE 143 (257)
T ss_pred CCCceecccHhhc--C-CCCccchhhhhhhhhh----cccc---HHHHHHHHHhhCCCceEEEECCC-ccCchhHHHHHH
Confidence 6788889999998 4 5578999998865433 2223 56788899999999999998522 133444555655
Q ss_pred HHH
Q psy4593 87 HCA 89 (132)
Q Consensus 87 ~l~ 89 (132)
+.+
T Consensus 144 ~A~ 146 (257)
T COG4106 144 TAD 146 (257)
T ss_pred HHh
Confidence 554
No 134
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.37 E-value=0.073 Score=40.80 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++++|+.+. .- .+++||+|+.- +.| .+++.+++.|+|||.++.-.
T Consensus 133 ~~~~~~~~d~~~l-p~-~~~sfD~I~~~-~~~-------------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 133 PQVTFCVASSHRL-PF-ADQSLDAIIRI-YAP-------------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred CCCeEEEeecccC-CC-cCCceeEEEEe-cCC-------------CCHHHHHhhccCCCEEEEEe
Confidence 5677788886653 21 35689999852 212 23577889999999998753
No 135
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.35 E-value=0.16 Score=37.95 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|..++- ...+|+|++...-.+ ..+. --.++++.++++|+|||.+++.
T Consensus 106 ~~v~~~~~d~~~~~----~~~~d~v~~~~~l~~---~~~~--~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 106 IPVEILCNDIRHVE----IKNASMVILNFTLQF---LPPE--DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCeEEEECChhhCC----CCCCCEEeeecchhh---CCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence 46788888887642 234787775432221 1111 1267999999999999999875
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.31 E-value=0.17 Score=41.66 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=38.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|..... - .+++||+|++-..-.+ . +. ...+++.+++.|+|||.+++.
T Consensus 314 ~~v~~~~~d~~~~~-~-~~~~fD~I~s~~~l~h--~--~d---~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 314 CSVEFEVADCTKKT-Y-PDNSFDVIYSRDTILH--I--QD---KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CceEEEEcCcccCC-C-CCCCEEEEEECCcccc--c--CC---HHHHHHHHHHHcCCCeEEEEE
Confidence 46888889876521 1 3468999997422111 1 11 258899999999999999864
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.27 E-value=0.61 Score=39.22 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=38.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC----------CCCCcccc----c----HHHHHHHHHhcCCCcEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV----------VCPAESLF----Q----ASYFELMSRALRPGGIV 67 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~----------~~~~~~L~----t----~eF~~~~~~~L~p~Gil 67 (132)
.+++++.+|..+.+. .++||+|+++.+- +... ..|...|+ . ..+++.+.+.|+|||.+
T Consensus 189 ~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l 265 (506)
T PRK01544 189 DRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI 265 (506)
T ss_pred cceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE
Confidence 578999999877553 3589999998641 1000 01111233 2 33456778899999999
Q ss_pred EEe
Q psy4593 68 CSQ 70 (132)
Q Consensus 68 ~~~ 70 (132)
++-
T Consensus 266 ~lE 268 (506)
T PRK01544 266 ILE 268 (506)
T ss_pred EEE
Confidence 874
No 138
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.20 E-value=0.12 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|..+.. ...+|+|++-..-.. ..+. --..+++.++++|+|||.+++.
T Consensus 109 ~~v~~~~~d~~~~~----~~~~D~vv~~~~l~~--l~~~---~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 109 TPVDVIEGDIRDIA----IENASMVVLNFTLQF--LEPS---ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCeEEEeCChhhCC----CCCCCEEehhhHHHh--CCHH---HHHHHHHHHHHhcCCCCEEEEE
Confidence 46788888866531 234888775432110 1111 1367899999999999999874
No 139
>KOG2899|consensus
Probab=93.08 E-value=0.11 Score=40.06 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 24 VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
...+||+|++=+-.-|.-. -....| ..||+.+.+.|.|||++++-
T Consensus 163 ~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEc
Confidence 4579999996433333100 112233 78999999999999999983
No 140
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=92.97 E-value=0.27 Score=38.94 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=37.4
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++++..|..+. .. .++||+|++ .+..- .. --.++++.+++.|+|||.+++.
T Consensus 171 ~~~i~~~~~d~e~l-p~--~~~FD~V~s~~vl~H---~~-----dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 171 DQRAHLLPLGIEQL-PA--LKAFDTVFSMGVLYH---RR-----SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCCeEEEeCCHHHC-CC--cCCcCEEEECChhhc---cC-----CHHHHHHHHHHhcCCCcEEEEE
Confidence 46788888887653 22 568999996 22111 10 1257899999999999999864
No 141
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.79 E-value=0.17 Score=37.81 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=36.3
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
...+++++++|..++-.. ...+||.|+--..= ...+.. --..+++.+++.|+|||.+.
T Consensus 92 ~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~----~~l~~~-~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 92 RAGNIEIFCGDFFALTAA-DLGPVDAVYDRAAL----IALPEE-MRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred ecCceEEEEccCCCCCcc-cCCCcCEEEechhh----ccCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence 356788899998775322 23568887532110 112212 24568999999999999643
No 142
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.70 E-value=1 Score=34.62 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEEecCCCCCChHHH
Q psy4593 6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR--PGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~--p~Gil~~~~~~~~~~~~~~ 81 (132)
+++++|+..||.+-+... ...+=-+|++|.+ ....... ...-+.+.++++ +.|++++|- |..+....
T Consensus 102 ~~~v~v~~~DG~~~l~allPP~~rRglVLIDPp-----YE~~~dy--~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~ 172 (245)
T PF04378_consen 102 DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPP-----YEQKDDY--QRVVDALAKALKRWPTGVYAIWY--PIKDRERV 172 (245)
T ss_dssp TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----------STTHH--HHHHHHHHHHHHH-TTSEEEEEE--EESSHHHH
T ss_pred CCccEEEeCchhhhhhhhCCCCCCCeEEEECCC-----CCCchHH--HHHHHHHHHHHHhcCCcEEEEEe--ecccHHHH
Confidence 579999999999998774 4567889999963 1111110 112233444444 899999985 55567778
Q ss_pred HHHHHHHHhh-CCCceE
Q psy4593 82 GNTLQHCASV-FPRVAY 97 (132)
Q Consensus 82 ~~~~~~l~~v-F~~v~~ 97 (132)
+.+.+.|++. .+.+..
T Consensus 173 ~~~~~~l~~~~~~~~l~ 189 (245)
T PF04378_consen 173 DRFLRALKALGIKKVLR 189 (245)
T ss_dssp HHHHHHHHHH-SSE-EE
T ss_pred HHHHHHHHhcCCCCeEE
Confidence 8899999865 555433
No 143
>KOG0780|consensus
Probab=92.67 E-value=0.31 Score=40.05 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh--CCCceEeEEec
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV--FPRVAYGATCV 102 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v--F~~v~~~~~~~ 102 (132)
++.||+||+|..-. .-...+||++ +..|+++++|+-++.+--.+.- .......+++++. +..|-+-...-
T Consensus 181 ke~fdvIIvDTSGR---h~qe~sLfeE--M~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 181 KENFDVIIVDTSGR---HKQEASLFEE--MKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred hcCCcEEEEeCCCc---hhhhHHHHHH--HHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEeccc
Confidence 57899999998755 3445566543 6789999999999876422221 1123344555543 34443322233
Q ss_pred cCcCCCceeEEEeecCC
Q psy4593 103 PTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 103 p~~~~~~~~f~~as~~~ 119 (132)
-+-+||...-+-|++.|
T Consensus 253 hakGGgAlSaVaaTksP 269 (483)
T KOG0780|consen 253 HAKGGGALSAVAATKSP 269 (483)
T ss_pred CCCCCceeeehhhhCCC
Confidence 33444444444444443
No 144
>PRK10742 putative methyltransferase; Provisional
Probab=92.48 E-value=0.13 Score=39.58 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=26.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
.|++++.+|+.+||++ ....||||++|..=|
T Consensus 145 ~ri~l~~~da~~~L~~-~~~~fDVVYlDPMfp 175 (250)
T PRK10742 145 ERLQLIHASSLTALTD-ITPRPQVVYLDPMFP 175 (250)
T ss_pred ceEEEEeCcHHHHHhh-CCCCCcEEEECCCCC
Confidence 5799999999999998 556899999997544
No 145
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.43 E-value=0.32 Score=38.68 Aligned_cols=50 Identities=14% Similarity=-0.055 Sum_probs=35.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++.++.+|+.+.+.. ...||+|+++..-+ . ....+.+.|+|||.+++..
T Consensus 131 ~nV~~i~gD~~~~~~~--~~~fD~Ii~~~g~~----~---------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 131 ENVIFVCGDGYYGVPE--FAPYDVIFVTVGVD----E---------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CcEEEEeCChhhcccc--cCCccEEEECCchH----H---------hHHHHHHhcCCCCEEEEEe
Confidence 4688999999887655 35799999985322 1 1234567899999988753
No 146
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.38 E-value=0.26 Score=40.11 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.|+++|.++-.++|++..++++|..+ +|..|= +.+ .. -.+-.+.+.+.++|||.++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dw---m~~--~~-~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDW---MDP--EQ-LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhh---CCH--HH-HHHHHHHHHHHhCCCCEEEEee
Confidence 78999999999999986688999877 698875 333 22 2566788999999999999864
No 147
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.33 E-value=0.81 Score=34.65 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=43.7
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh-CCCceEeEEeccCc
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCVPTY 105 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~ 105 (132)
+||+|+.+.... . -..+++.+.+.|+|||.+++.... ......+.+.+++. |.-+....
T Consensus 179 ~fD~Vvani~~~--------~--~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf~~~~~~~------ 238 (250)
T PRK00517 179 KADVIVANILAN--------P--LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGFTLDEVLE------ 238 (250)
T ss_pred CcCEEEEcCcHH--------H--HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCCEEEEEEE------
Confidence 699998765321 1 256789999999999999985311 22345666677665 55443321
Q ss_pred CCCceeEEEeec
Q psy4593 106 PSGQIGFVLGSQ 117 (132)
Q Consensus 106 ~~~~~~f~~as~ 117 (132)
.+.|..+++.+
T Consensus 239 -~~~W~~~~~~~ 249 (250)
T PRK00517 239 -RGEWVALVGKK 249 (250)
T ss_pred -eCCEEEEEEEe
Confidence 24576666543
No 148
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=92.21 E-value=1 Score=37.17 Aligned_cols=85 Identities=16% Similarity=0.020 Sum_probs=47.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCcccc--------cHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESLF--------QASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L~--------t~eF~~~~~~~L~p~Gil~ 68 (132)
.+++++.+|..+.... ...+||+|+++.+- +.... .|...|+ -+.+.+.+.++|+|||.++
T Consensus 300 ~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 300 ARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred CcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 3788999997664222 23579999998742 11000 0111122 2355566678999999988
Q ss_pred EecCCCCCChHHHHHHHHHHHh-hCCCceE
Q psy4593 69 SQAGTLWYSLDCVGNTLQHCAS-VFPRVAY 97 (132)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~ 97 (132)
+-.+. .+ ...+.+.+++ .|..+..
T Consensus 379 lEiG~--~Q---~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 379 LEHGF--DQ---GAAVRGVLAENGFSGVET 403 (423)
T ss_pred EEECc--cH---HHHHHHHHHHCCCcEEEE
Confidence 64322 22 2344444444 3666555
No 149
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=91.84 E-value=0.098 Score=37.45 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=43.4
Q ss_pred CeecEEEEcCCCCCCCCCC-----CcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCP-----AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGAT 100 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~-----~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~ 100 (132)
+++|+|+.|..-...+... ...| ...-+..+.+.|+|||.+++-. +..... ..++..++..|..|.++..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~a~~~L~~gG~~v~K~---~~~~~~-~~~~~~l~~~F~~v~~~Kp 164 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLLALELLKPGGTFVIKV---FKGPEI-EELIYLLKRCFSKVKIVKP 164 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHH-HHHHHHHHHHHHCTTEEEEEEE---SSSTTS-HHHHHHHHHHHHHEEEEE-
T ss_pred cCcceeccccccCCCCchhhHHHHHHHH-HHHHHHHHHhhhcCCCEEEEEe---ccCccH-HHHHHHHHhCCeEEEEEEC
Confidence 6999999998432100100 1122 2223345667899999888753 111122 3778888889988887643
Q ss_pred eccCcCCCceeEEEe
Q psy4593 101 CVPTYPSGQIGFVLG 115 (132)
Q Consensus 101 ~~p~~~~~~~~f~~a 115 (132)
.. +.+.+.-.+++|
T Consensus 165 ~~-sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 165 PS-SRSESSEEYLVC 178 (181)
T ss_dssp TT-SBTTCBEEEEES
T ss_pred cC-CCCCccEEEEEE
Confidence 22 223334445554
No 150
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.67 E-value=0.12 Score=39.67 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++....|..+.- - ..++||+|++ .+... .. .--....++.++++|+|||++++-
T Consensus 186 ~V~F~~~dl~~~~-~-~~~~fD~I~crnvl~y---f~---~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 186 RVRFAKHNLLAES-P-PLGDFDLIFCRNVLIY---FD---EPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred cCEEeeccCCCCC-C-ccCCCCEEEechhHHh---CC---HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5666666654421 1 2568999997 33211 11 111357899999999999999985
No 151
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=91.61 E-value=0.48 Score=37.55 Aligned_cols=55 Identities=7% Similarity=-0.090 Sum_probs=35.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.++++...|..+ +.. ..+||+|++-..-.+ . . --.++++.+++.|+|||.+++.
T Consensus 170 ~~~v~~~~~~ie~-lp~--~~~FD~V~s~gvL~H--~--~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 170 DKRAILEPLGIEQ-LHE--LYAFDTVFSMGVLYH--R--K---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCCeEEEECCHHH-CCC--CCCcCEEEEcchhhc--c--C---CHHHHHHHHHHhcCCCCEEEEE
Confidence 3566666666544 222 347999986432111 1 1 1157899999999999999864
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.55 E-value=0.097 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 24 VKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 24 ~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++||+|++- +..- .+ --.++++.+++.|+|||++++..
T Consensus 75 ~~~~fD~i~~~~~l~~-----~~---d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEH-----LP---DPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp HSSSEEEEEEESSGGG-----SS---HHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cccchhhHhhHHHHhh-----cc---cHHHHHHHHHHhcCCCCEEEEEE
Confidence 35799999964 3322 11 14789999999999999999764
No 153
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.54 E-value=0.34 Score=39.34 Aligned_cols=53 Identities=32% Similarity=0.483 Sum_probs=35.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++..+|..+. +++||+|+. ..+.. .+. -.-.++++.+++.|+|||.+++..
T Consensus 214 ~v~~~~~D~~~l-----~~~fD~Ivs~~~~eh---vg~---~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 214 PVEIRLQDYRDL-----NGQFDRIVSVGMFEH---VGP---KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eEEEEECchhhc-----CCCCCEEEEeCchhh---CCh---HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467777886542 357999974 33221 111 112578999999999999998863
No 154
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=91.08 E-value=0.37 Score=37.34 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=34.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
....+++-.|- |- + .+.+||+|.+ .+=|.. .-| ...++.++++|+|+|++++-
T Consensus 134 ~kg~~vl~~~~--w~-~-~~~~fDvIscLNvLDRc---~~P-----~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 134 KKGFTVLDIDD--WQ-Q-TDFKFDVISCLNVLDRC---DRP-----LTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hCCCeEEehhh--hh-c-cCCceEEEeehhhhhcc---CCH-----HHHHHHHHHHhCCCCEEEEE
Confidence 34455554444 32 3 4678999984 444431 122 45689999999999998653
No 155
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.85 E-value=0.2 Score=38.93 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=57.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC---CCC------------cccccHHHHHHHHHhc----CCCcEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV---CPA------------ESLFQASYFELMSRAL----RPGGIV 67 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~---~~~------------~~L~t~eF~~~~~~~L----~p~Gil 67 (132)
.++.++..|+.++........||.|++|++=.+.+. .|. -.-...+.++.+.+.| +|||.+
T Consensus 136 ~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~l 215 (283)
T PF01189_consen 136 FNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRL 215 (283)
T ss_dssp SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEE
T ss_pred ceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeE
Confidence 456777799999865423347999999986332111 111 0123567788999999 999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 68 CSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
+--+++.. .++-..+++.+-+.+++...
T Consensus 216 vYsTCS~~--~eENE~vV~~fl~~~~~~~l 243 (283)
T PF01189_consen 216 VYSTCSLS--PEENEEVVEKFLKRHPDFEL 243 (283)
T ss_dssp EEEESHHH--GGGTHHHHHHHHHHSTSEEE
T ss_pred EEEeccHH--HHHHHHHHHHHHHhCCCcEE
Confidence 86554432 23345566666667776655
No 156
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.77 E-value=0.53 Score=34.30 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=31.1
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
++....|...+ . .+++||+|+.-. +.- .. . -...++++.+++.|+|||.++
T Consensus 79 v~~~~~d~~~~--~-~~~~fD~I~~~~~~~~---~~-~--~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 79 LRTDAYDINAA--A-LNEDYDFIFSTVVFMF---LQ-A--GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ceeEeccchhc--c-ccCCCCEEEEeccccc---CC-H--HHHHHHHHHHHHHhCCCcEEE
Confidence 55566665432 1 235799998642 211 11 1 123688999999999999844
No 157
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.75 E-value=0.38 Score=37.17 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=34.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++...|.... . .+++||+|+.-..-.. . .+. --.++++.+++.|+|||++++
T Consensus 168 ~v~~~~~D~~~~--~-~~~~fD~I~~~~vl~~--l-~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 168 NIRTGLYDINSA--S-IQEEYDFILSTVVLMF--L-NRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ceEEEEechhcc--c-ccCCccEEEEcchhhh--C-CHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 566777776553 1 2468999986543110 1 111 235789999999999998543
No 158
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.65 E-value=1.6 Score=33.79 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEEecCCCCCChHH
Q psy4593 5 RGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR--PGGIVCSQAGTLWYSLDC 80 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~--p~Gil~~~~~~~~~~~~~ 80 (132)
.|.|+++..+||..-++.. .+++=-+|++|.+ ....... ....+.+++.++ ++|++++|- |-.+...
T Consensus 132 ~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP-----fE~~~eY--~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~ 202 (279)
T COG2961 132 GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP-----FELKDEY--QRVVEALAEAYKRFATGTYAIWY--PIKDRRQ 202 (279)
T ss_pred CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC-----cccccHH--HHHHHHHHHHHHhhcCceEEEEE--eecchHH
Confidence 4789999999999999874 4577899999973 2222110 111222333333 799999985 4456778
Q ss_pred HHHHHHHHHhh-CCCc
Q psy4593 81 VGNTLQHCASV-FPRV 95 (132)
Q Consensus 81 ~~~~~~~l~~v-F~~v 95 (132)
++.+.+.+++. .+.+
T Consensus 203 ~~~f~~~L~~~~i~ki 218 (279)
T COG2961 203 IRRFLRALEALGIRKI 218 (279)
T ss_pred HHHHHHHHhhcCccce
Confidence 89999999876 4443
No 159
>KOG1122|consensus
Probab=90.35 E-value=1.9 Score=35.71 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCc--------------ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAE--------------SLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~--------------~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+..+.+.||++|-.+....+||=|++|++=...+. .-++ .=+.++.+..+.+.+++||++|--+
T Consensus 292 ~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 292 TNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred CceEEEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 345677889998854423448999999996432111 1111 1235667788889999999998766
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
++. ..+.-..+++-..+.||++.+.
T Consensus 372 CSI--~~~ENE~vV~yaL~K~p~~kL~ 396 (460)
T KOG1122|consen 372 CSI--TVEENEAVVDYALKKRPEVKLV 396 (460)
T ss_pred eec--chhhhHHHHHHHHHhCCceEec
Confidence 553 3344577888899999999873
No 160
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.14 E-value=0.76 Score=37.34 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+...++.+||-..+.+ ....||+|=+|.|-. | .+|.+.+.+..+.+|++++-
T Consensus 102 ~~~~v~n~DAN~lm~~-~~~~fd~IDiDPFGS------P-----aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 102 EDAEVINKDANALLHE-LHRAFDVIDIDPFGS------P-----APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ccceeecchHHHHHHh-cCCCccEEecCCCCC------C-----chHHHHHHHHhhcCCEEEEE
Confidence 3445666999999988 678999999997742 2 57899999999999999865
No 161
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.94 E-value=0.43 Score=34.54 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCcEEE
Q psy4593 51 ASYFELMSRALRPGGIVC 68 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~ 68 (132)
.++.+.|++.|+|+|++-
T Consensus 66 ~~alkechr~Lrp~G~Lr 83 (185)
T COG4627 66 TSALKECHRFLRPGGKLR 83 (185)
T ss_pred HHHHHHHHHHhCcCcEEE
Confidence 457799999999999984
No 162
>KOG1270|consensus
Probab=89.88 E-value=0.28 Score=38.20 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 25 KNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 25 ~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..+||+|++ ++... ... -+||.+.|.+.|+|||.+.+-.
T Consensus 156 ~~~fDaVvcsevleH---V~d-----p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 TGKFDAVVCSEVLEH---VKD-----PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccccceeeeHHHHHH---HhC-----HHHHHHHHHHHhCCCCceEeee
Confidence 456999985 43321 111 1899999999999999998743
No 163
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=89.80 E-value=0.44 Score=35.63 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGI 66 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi 66 (132)
+.+.++++..+|..++-.. ....||.|+-= ++- ..+. =.-..+++.+++.|+|||.
T Consensus 94 ~~~~~v~~~~~D~~~l~~~-~~~~fd~v~D~~~~~-----~l~~-~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 94 YQAGEITIYCGDFFALTAA-DLADVDAVYDRAALI-----ALPE-EMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cccCceEEEECcccCCCcc-cCCCeeEEEehHhHh-----hCCH-HHHHHHHHHHHHHcCCCCe
Confidence 3467888899998886433 23578887731 111 1111 1257889999999999985
No 164
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=89.78 E-value=0.33 Score=37.74 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=43.4
Q ss_pred CCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 6 GYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
..++.++.+|-.++-... ..++||+|+.=-|-. -+..+ .++++.++++|+|||+-+ |.|..
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-----TA~Ni--~~Yi~tI~~lLkpgG~WI-N~GPL 204 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-----TAENI--IEYIETIEHLLKPGGYWI-NFGPL 204 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEee-----chHHH--HHHHHHHHHHhccCCEEE-ecCCc
Confidence 568889999988876551 257999999654421 12233 689999999999999664 55443
No 165
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.36 E-value=0.11 Score=39.92 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+.++|+..|++..++++||+|. .|+... .+-- ..+|-.+...|+|||.++..+
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y---lG~L-----e~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPY---LGAL-----EGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHh---hcch-----hhHHHHHHHhcCCCceEEEEe
Confidence 4568899999854789999999 476543 3333 456889999999999998754
No 166
>KOG1540|consensus
Probab=89.04 E-value=1.3 Score=34.62 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEE-----cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVS-----GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-----D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++++..+.+||-+ |.= .++.||...+ .++|+ ..-++.++|.|||||.+..
T Consensus 157 ~~~~~~w~~~dAE~-LpF-dd~s~D~yTiafGIRN~th~------------~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 157 ASSRVEWVEGDAED-LPF-DDDSFDAYTIAFGIRNVTHI------------QKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cCCceEEEeCCccc-CCC-CCCcceeEEEecceecCCCH------------HHHHHHHHHhcCCCcEEEE
Confidence 35668888888766 332 5677887764 33333 4568999999999999874
No 167
>PHA03412 putative methyltransferase; Provisional
Probab=88.92 E-value=1.2 Score=34.20 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=36.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCC-CCC---CCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGR-VVC---PAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~-~~~---~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|...+- .+.+||+||.+.+= +.. ... ....++...|++.+.+.|++|+ +++
T Consensus 97 ~~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 97 PEATWINADALTTE---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cCCEEEEcchhccc---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 56889999987653 24589999998641 100 000 1123567778889888555555 554
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=88.82 E-value=1.8 Score=34.97 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=38.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.+++.. ...+||+|++|.+-. +. ..++.+.+. .++|++++.+-+
T Consensus 282 ~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~----G~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 282 NLSFAALDSAKFATA-QMSAPELVLVNPPRR----GI-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred cEEEEECCHHHHHHh-cCCCCCEEEECCCCC----CC-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 789999999999865 335699999997422 22 255666665 489999887743
No 169
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=88.73 E-value=0.23 Score=37.47 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCeecEEEEcCCCCCCCCCCCccccc---HHHHHHHHHhcCCCcEEEE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQ---ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+||+|-+==. ..+|.. .+|++.|++.|+|+|++++
T Consensus 120 ~~~YDlIW~QW~--------lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 120 EGKYDLIWIQWC--------LGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp TT-EEEEEEES---------GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCcEeEEEehHh--------hccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 469999986411 113332 6789999999999999997
No 170
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.40 E-value=0.14 Score=39.04 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=20.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA 35 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~ 35 (132)
.|++++.+|+.+||+. .+++||||..|.
T Consensus 132 ~ri~l~~~d~~~~L~~-~~~s~DVVY~DP 159 (234)
T PF04445_consen 132 RRIQLIHGDALEYLRQ-PDNSFDVVYFDP 159 (234)
T ss_dssp HHEEEEES-CCCHCCC-HSS--SEEEE--
T ss_pred hCCEEEcCCHHHHHhh-cCCCCCEEEECC
Confidence 3789999999999995 789999999995
No 171
>KOG1253|consensus
Probab=88.36 E-value=0.67 Score=39.01 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=41.3
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..++.+..||..-+-+. ..++||+|=+|.|.. + ..|++.+-++++.||++++-
T Consensus 161 ~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs------~-----s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 161 DIVEPHHSDANVLMYEHPMVAKFFDVIDLDPYGS------P-----SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred hhcccccchHHHHHHhccccccccceEecCCCCC------c-----cHHHHHHHHHhhcCCEEEEE
Confidence 45678888988766441 348999999998743 2 67999999999999999754
No 172
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=88.22 E-value=1.8 Score=35.41 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=38.2
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+++++.+|+.+++.+. ...+||+|++|.+.. +. ..++++.+.+ |+|+|++.+
T Consensus 340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~----G~-----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK----GC-----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC----CC-----CHHHHHHHHh-cCCCEEEEE
Confidence 47899999999987542 235799999997532 21 3677777664 899998765
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=87.82 E-value=1.4 Score=32.26 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=42.6
Q ss_pred CcEEEEccHHH---HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTD---FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.++++.+||.. ++.+.....||.||+-+.-- ..+ .=-+.+.++.+..+|..||.+++-.
T Consensus 95 ~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll----~~P-~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 95 GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL----NFP-MHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CccccccchhhHHHHHhhcCCCeeeeEEeccccc----cCc-HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 34578899765 45554567899999988532 222 1236888999999999999999743
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=87.80 E-value=1.9 Score=31.57 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=41.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.+.+-+ .. ...+||+|+.=+..+ -..+++.+...|+++|.++..-|.
T Consensus 98 ~nv~v~~~R~E~--~~-~~~~fd~v~aRAv~~-----------l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 98 SNVEVINGRAEE--PE-YRESFDVVTARAVAP-----------LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSEEEEES-HHH--TT-TTT-EEEEEEESSSS-----------HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred CCEEEEEeeecc--cc-cCCCccEEEeehhcC-----------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 578899988888 33 568999999988765 267899999999999999987544
No 175
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.57 E-value=1.7 Score=32.51 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=44.7
Q ss_pred CeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
...|+|++|..-...+.-...+.. ..--++.+.+.|+|+|.++.- ..+.+....+++.+++.|..|...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHHHhhceeEEe
Confidence 457999999875421111111111 223346677899999999973 223334678999999999998863
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=87.51 E-value=6 Score=31.87 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++..+.+|+++.+.. . ..+|-||...+. .+.+|+..+.++|+++|++-..
T Consensus 238 ~~v~~i~gD~rev~~~-~-~~aDrIim~~p~-----------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 238 GRVEPILGDAREVAPE-L-GVADRIIMGLPK-----------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred ceeeEEeccHHHhhhc-c-ccCCEEEeCCCC-----------cchhhHHHHHHHhhcCcEEEEE
Confidence 3478899999998766 2 788999887753 3588999999999999999875
No 177
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=87.31 E-value=0.67 Score=34.74 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGI 66 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi 66 (132)
+.+.+++++++|-.++=.. ...+||+|. .-++- +.+ .-.-.++.+.+++.|+|||.
T Consensus 94 ~~~~~i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~-----Alp-p~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPE-DVGKFDLIYDRTFLC-----ALP-PEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp ETTSSEEEEES-TTTGGGS-CHHSEEEEEECSSTT-----TS--GGGHHHHHHHHHHCEEEEEE
T ss_pred ecCCceEEEEcccccCChh-hcCCceEEEEecccc-----cCC-HHHHHHHHHHHHHHhCCCCc
Confidence 4577899999999885444 335899987 22221 222 33578899999999999999
No 178
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=86.90 E-value=2.4 Score=30.41 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=27.8
Q ss_pred ecEEEEcCCCCCCCCC--------CCcccccH-HHHHH-HHHhcCCCcEEEEecCCC
Q psy4593 28 CGLVVSGAAGPGRVVC--------PAESLFQA-SYFEL-MSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~--------~~~~L~t~-eF~~~-~~~~L~p~Gil~~~~~~~ 74 (132)
||+|+.|.+ |.... ..-...+. +..+. +.+.++++|++.+++.+.
T Consensus 1 fdvI~~DPP--W~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~ 55 (176)
T PF05063_consen 1 FDVIYADPP--WPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS 55 (176)
T ss_pred CCEEEEeCC--CCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc
Confidence 899999984 32111 01122343 33333 677888989999997664
No 179
>KOG3010|consensus
Probab=86.01 E-value=1.9 Score=33.27 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred cHHHHHHHHHhcCCCc-EEEEecCC
Q psy4593 50 QASYFELMSRALRPGG-IVCSQAGT 73 (132)
Q Consensus 50 t~eF~~~~~~~L~p~G-il~~~~~~ 73 (132)
-.+||+.+++.|+++| ++++|+-+
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 4789999999999877 88888644
No 180
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=85.43 E-value=1.6 Score=34.01 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.3
Q ss_pred cEEEEccHHHHhcCC--C-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 VLSARQDCTDFMSGP--V-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~--~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++.+++|..+.+.-. . .....+++.+..-.. .. + --...|++.++++|+|||.+++-
T Consensus 117 v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~--~~-~--~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 117 VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGN--FT-P--EEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEEEcccchhhhhcccccCCeEEEEecccccC--CC-H--HHHHHHHHHHHHhcCCCCEEEEe
Confidence 445788876543220 1 113344555554331 11 1 11367999999999999999864
No 181
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=85.34 E-value=1.6 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
...++.++++|+|||.+++.
T Consensus 234 ~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 234 TIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 45799999999999999875
No 182
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=85.22 E-value=0.92 Score=34.85 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcC--CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGA--AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~--~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++++.++-.+-|.+...+++-++-+|+ ++| |.+-++.++.+|.|||++++-
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-----------T~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-----------TKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-----------HHHHHHHHGGGEEEEEEEEES
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-----------HHHHHHHHHhhcCCCeEEEEe
Confidence 4689999999999998874557787777765 333 688899999999999999984
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.69 E-value=3.2 Score=33.49 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=37.8
Q ss_pred EEEc-cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc--ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 11 SARQ-DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE--SLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 11 v~~~-Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~--~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+... ||.. +. ..++++|.|++|.+-......... .-.-.+|++...+.|++||.++..+
T Consensus 249 ~~~~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 249 VLKVLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred EEEeccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 3444 6554 33 244579999999864310001111 1224789999999999999999875
No 184
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=84.68 E-value=2.4 Score=29.96 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=35.6
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~ 71 (132)
.++++++.+|+.++... +.+||.|+.++ | .. . +.+.+..+.+. +.++|++++|-
T Consensus 58 ~~~v~ii~~D~~~~~~~--~~~~d~vi~n~--P---y~----~-~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 58 ADNLTVIHGDALKFDLP--KLQPYKVVGNL--P---YN----I-STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCCEEEEECchhcCCcc--ccCCCEEEECC--C---cc----c-HHHHHHHHHhcCCCcceEEEEEEH
Confidence 46899999999987433 34699999986 3 11 2 23444444433 44889998874
No 185
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=84.55 E-value=5.7 Score=31.13 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++.. ..++||+|++|.+.. +. ..+..+.+ ..++|++++.+-+
T Consensus 221 ~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~----G~-----~~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 221 TNVQFQALDSTQFATA-QGEVPDLVLVNPPRR----GI-----GKELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred CceEEEEcCHHHHHHh-cCCCCeEEEECCCCC----Cc-----cHHHHHHH-HHcCCCeEEEEEC
Confidence 4789999999998765 345799999996422 22 23333333 3478888777644
No 186
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=83.77 E-value=0.82 Score=33.80 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=43.0
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CCCCC---ChHHHHH
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GTLWY---SLDCVGN 83 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~~~~---~~~~~~~ 83 (132)
++....|--++ . -+++||+|+....-. .-.+ .+ -+..++.++++++|||++++.+ ..+.. ....+.-
T Consensus 79 i~~~~~Dl~~~--~-~~~~yD~I~st~v~~---fL~~-~~-~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~ 150 (192)
T PF03848_consen 79 IRTRVADLNDF--D-FPEEYDFIVSTVVFM---FLQR-EL-RPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLL 150 (192)
T ss_dssp EEEEE-BGCCB--S--TTTEEEEEEESSGG---GS-G-GG-HHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B
T ss_pred eEEEEecchhc--c-ccCCcCEEEEEEEec---cCCH-HH-HHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCccc
Confidence 56666773332 1 246799999764322 1222 22 2778999999999999988632 11111 0111111
Q ss_pred HHHHHHhhCCCceE
Q psy4593 84 TLQHCASVFPRVAY 97 (132)
Q Consensus 84 ~~~~l~~vF~~v~~ 97 (132)
--+.|++.|.+-.+
T Consensus 151 ~~~EL~~~y~dW~i 164 (192)
T PF03848_consen 151 KPGELREYYADWEI 164 (192)
T ss_dssp -TTHHHHHTTTSEE
T ss_pred CHHHHHHHhCCCeE
Confidence 22457777776655
No 187
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=83.36 E-value=1.8 Score=32.76 Aligned_cols=61 Identities=8% Similarity=0.045 Sum_probs=40.1
Q ss_pred CCCCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 4 YRGYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+...+++++++|..++=.. ....+||+|+ |..-= ...+ .=....+.+.+++.|+|||.++.
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~Vy-Dra~~---~Alp-p~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWY-DRGAY---IALP-NDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeee-eehhH---hcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 4566889999998885211 0235799965 32110 1222 23468899999999999998764
No 188
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=82.64 E-value=4.6 Score=33.25 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=37.0
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+++.+. .+++||+|++|.+-. + + .+..+.+.+ |+|++++.+-+
T Consensus 345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~----g----~--~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA----G----A--AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc----C----h--HHHHHHHHh-cCCCeEEEEEe
Confidence 36899999999887431 245799999997432 2 1 244555554 79999877644
No 189
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=82.53 E-value=1 Score=32.83 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=27.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
.+||+||++=.. +..|. +.+.++.+++-.+.||-+++-+|..
T Consensus 66 ~~yD~vIl~dv~-------~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~~ 111 (177)
T PF07090_consen 66 NRYDVVILSDVP-------ANSLLKSRRSPNQLELLADYVRDGGGLLMIGGPR 111 (177)
T ss_dssp CT-SEEEEES---------HHHHHT----HHHHHHHHHHHHTT-EEEEE-STT
T ss_pred hcCCEEEEeCCC-------chhcccccCCHHHHHHHHHHHHhCCEEEEEeChh
Confidence 579999987433 23343 8999999999999999998865443
No 190
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=82.30 E-value=6.5 Score=30.53 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHhcCCCCCeecEEEEcCC-CCCC--CCCC---------------CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 18 DFMSGPVKNMCGLVVSGAA-GPGR--VVCP---------------AESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 18 ~~l~~~~~~~yDvIi~D~~-dp~~--~~~~---------------~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+.+. -.++||+|+...+ -|.. ...+ .+--+...|...+.+.|+|+|++++-.
T Consensus 168 dlf~~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 168 DLFEP-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ecccc-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 55555 4459999998754 1210 0000 111245667788999999999999875
No 191
>KOG2915|consensus
Probab=82.16 E-value=4.4 Score=31.93 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=46.5
Q ss_pred CCcEEEEccH--HHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 7 YPVLSARQDC--TDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 7 ~rv~v~~~Dg--~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
.++.+++.|. .-|..+ +..+|+|++|+..|| .+.| .+..+|+.+|..+.+. ..=.+.+++.
T Consensus 157 ~~vt~~hrDVc~~GF~~k--s~~aDaVFLDlPaPw--~AiP----------ha~~~lk~~g~r~csF---SPCIEQvqrt 219 (314)
T KOG2915|consen 157 DNVTVTHRDVCGSGFLIK--SLKADAVFLDLPAPW--EAIP----------HAAKILKDEGGRLCSF---SPCIEQVQRT 219 (314)
T ss_pred cceEEEEeecccCCcccc--ccccceEEEcCCChh--hhhh----------hhHHHhhhcCceEEec---cHHHHHHHHH
Confidence 4566666662 223332 578999999999997 5544 2233788777544431 1113456666
Q ss_pred HHHHHh-hCCCceEeEE
Q psy4593 85 LQHCAS-VFPRVAYGAT 100 (132)
Q Consensus 85 ~~~l~~-vF~~v~~~~~ 100 (132)
.+.|++ -|-++.....
T Consensus 220 ce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 220 CEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHhCCCceEEEEEe
Confidence 667776 4877766444
No 192
>KOG4589|consensus
Probab=81.39 E-value=5.4 Score=29.93 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=42.7
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHH----HHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQAS----YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~e----F~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
...+-|+|+.|...-.++...-.+.-+.| -+...-.-|.|+|.++.-. | +.+.-..+.+.|.++|..|...
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~---w-~g~e~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL---W-DGSEEALLQRRLQAVFTNVKKV 207 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE---e-cCCchHHHHHHHHHHhhhcEee
Confidence 45789999999764321222222221111 2233345578999999631 2 2223567889999999999864
No 193
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=81.34 E-value=2.3 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=25.1
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..||++|.|+++. ++++-+..+...++-||++++-+
T Consensus 10 ~e~~~~i~d~~~g----------~~pnal~a~~gtv~gGGllill~ 45 (92)
T PF08351_consen 10 QEFDLLIFDAFEG----------FDPNALAALAGTVRGGGLLILLL 45 (92)
T ss_dssp --BSSEEEE-SS-------------HHHHHHHHTTB-TT-EEEEEE
T ss_pred CccCEEEEEccCC----------CCHHHHHHHhcceecCeEEEEEc
Confidence 4799999999865 46788999999999999998754
No 194
>KOG2940|consensus
Probab=81.32 E-value=0.55 Score=36.26 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=36.7
Q ss_pred CCCCcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 5 RGYPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 5 ~d~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+||.+++. ++| -++|.= .++++|+||.-+.-.|. ... +..+..|+.+|||+|++..
T Consensus 115 qdp~i~~~~~v~D-EE~Ldf-~ens~DLiisSlslHW~-NdL------Pg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 115 QDPSIETSYFVGD-EEFLDF-KENSVDLIISSLSLHWT-NDL------PGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred CCCceEEEEEecc-hhcccc-cccchhhhhhhhhhhhh-ccC------chHHHHHHHhcCCCccchh
Confidence 45555443 233 234443 67899999987765541 122 3458999999999999974
No 195
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=81.02 E-value=1.3 Score=32.70 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=29.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|+....|-.+ . .....+||+|++ ++.-. .. .-....-++.++++|+|||.+++-
T Consensus 119 ~V~F~~~NL~~-~-~~~~~~fD~I~CRNVlIY---F~---~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 119 MVRFRRHNLLD-P-DPPFGRFDLIFCRNVLIY---FD---PETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TEEEEE--TT--S-------EEEEEE-SSGGG---S----HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred ceEEEecccCC-C-CcccCCccEEEecCEEEE---eC---HHHHHHHHHHHHHHcCCCCEEEEe
Confidence 34444555444 1 114578999996 43221 11 123477889999999999999985
No 196
>KOG0822|consensus
Probab=80.94 E-value=1.3 Score=37.78 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC----ChHHH
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----SLDCV 81 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~----~~~~~ 81 (132)
+.||+|+-.|-|.|-. ..++-|+|+..+-.. ....-.++|-+..+-.-|+|+||.+-+..+.+. ...++
T Consensus 420 ~~~Vtii~~DMR~w~a--p~eq~DI~VSELLGS-----FGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~ 492 (649)
T KOG0822|consen 420 DNRVTIISSDMRKWNA--PREQADIIVSELLGS-----FGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLY 492 (649)
T ss_pred cCeeEEEeccccccCC--chhhccchHHHhhcc-----ccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHH
Confidence 5789999999999852 248999999877433 223455899999999999999998755322222 23333
Q ss_pred HHHHHHHH-hhCCCceE
Q psy4593 82 GNTLQHCA-SVFPRVAY 97 (132)
Q Consensus 82 ~~~~~~l~-~vF~~v~~ 97 (132)
+.+.++-. ..|...++
T Consensus 493 q~v~a~~~~~~fe~~YV 509 (649)
T KOG0822|consen 493 QEVKATNDPNAFEAPYV 509 (649)
T ss_pred HHHHhcCCccccccceE
Confidence 43333333 25765443
No 197
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=80.52 E-value=2 Score=30.82 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=30.8
Q ss_pred CCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 25 KNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 25 ~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
.++||+|| .|+.=- .-.-..+.+.+++.|+++|.+.+-. +.+ ....+.+++.+++
T Consensus 117 ~~~~D~IlasDv~Y~--------~~~~~~L~~tl~~ll~~~~~vl~~~--~~R-~~~~~~F~~~~~k 172 (173)
T PF10294_consen 117 PHSFDVILASDVLYD--------EELFEPLVRTLKRLLKPNGKVLLAY--KRR-RKSEQEFFDRLKK 172 (173)
T ss_dssp -SSBSEEEEES--S---------GGGHHHHHHHHHHHBTT-TTEEEEE--E-S--TGGCHHHHHH--
T ss_pred cccCCEEEEecccch--------HHHHHHHHHHHHHHhCCCCEEEEEe--CEe-cHHHHHHHHHhhh
Confidence 46899999 686411 1234788999999999999855532 222 2223455556554
No 198
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=80.39 E-value=4.3 Score=31.73 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=35.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..+++++.+|+...-.+ -..||+|++-+--+ +..- =-.+.++.+.++++||..+++..
T Consensus 173 ~~~m~f~~~d~~~~~~d--l~~~DvV~lAalVg---~~~e---~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 173 SKRMSFITADVLDVTYD--LKEYDVVFLAALVG---MDAE---PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SSEEEEES-GGGG-GG------SEEEE-TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cCCeEEEecchhccccc--cccCCEEEEhhhcc---cccc---hHHHHHHHHHhhCCCCcEEEEec
Confidence 57889999998764322 35899999987532 1111 24788999999999999999874
No 199
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=79.88 E-value=1.2 Score=34.90 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=27.5
Q ss_pred CeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 26 NMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 26 ~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+.||+|++ ++.-. ... -.....++.++++|+|||++++-
T Consensus 222 ~~fD~I~cRNvliy---F~~---~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 222 GPFDAIFCRNVMIY---FDK---TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCcceeeHhhHHhc---CCH---HHHHHHHHHHHHHhCCCcEEEEe
Confidence 57999986 33221 111 12467899999999999999885
No 200
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=79.68 E-value=1.1 Score=30.29 Aligned_cols=20 Identities=35% Similarity=0.712 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
..||+.+.+.|+|||++++-
T Consensus 24 ~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEe
Confidence 67999999999999999985
No 201
>PF08472 S6PP_C: Sucrose-6-phosphate phosphohydrolase C-terminal; InterPro: IPR013679 This is the Sucrose-6-phosphate phosphohydrolase (S6PP or SPP) C-terminal domain [] as found in plant sucrose phosphatases. These enzymes irreversibly catalyse the last step in sucrose synthesis following the formation of Sucrose-6-Phosphate via sucrose-phosphate synthase (SPS). ; GO: 0000287 magnesium ion binding, 0050307 sucrose-phosphate phosphatase activity, 0005986 sucrose biosynthetic process
Probab=79.42 E-value=2.7 Score=29.35 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 49 FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 49 ~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
-+.++++.++..+.|+|+++.. +.-...+...+++|++.++
T Consensus 43 ~se~~~~~LK~~~~~~g~~vhP----sGvE~slh~~Id~Lr~~yG 83 (133)
T PF08472_consen 43 NSEEYFQRLKSVCHPNGTFVHP----SGVEKSLHDSIDALRSCYG 83 (133)
T ss_pred CcHHHHHHhhhhhccCcCEEcc----ccccccHHHHHHHHHHHhh
Confidence 4688999999999999999974 3333346778888888874
No 202
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.00 E-value=6.8 Score=29.81 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-----------cccc------------cHHHHHHHHHhc
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-----------ESLF------------QASYFELMSRAL 61 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-----------~~L~------------t~eF~~~~~~~L 61 (132)
.+..-+++.+|+.+.++...+..+|+|+.|.+-.. ... .... ..+.+..+.+.|
T Consensus 13 ~~~~~~i~~~d~~~~l~~~~~~svDli~tdppy~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl 89 (302)
T COG0863 13 IDELSKIYKGDCLEILKSLPENSVDLIFTDPPYNN---VKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVL 89 (302)
T ss_pred HhhhhheecchHHHHHhhccccceeEEEcCCCccc---cccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhhee
Confidence 34566789999999998865669999999987542 111 1111 456677889999
Q ss_pred CCCcEEEEec
Q psy4593 62 RPGGIVCSQA 71 (132)
Q Consensus 62 ~p~Gil~~~~ 71 (132)
+++|.+.+..
T Consensus 90 ~~~~~~~v~~ 99 (302)
T COG0863 90 KPGGSLYVID 99 (302)
T ss_pred cCCCEEEEEC
Confidence 9999998875
No 203
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=77.34 E-value=2.4 Score=31.93 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCCCcEEEEe
Q psy4593 49 FQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 49 ~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+-..+++.+.++|||||++.+-
T Consensus 144 ~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 144 TAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred hHHHHHHHHHHhcCCCcEEEEE
Confidence 4578899999999999999863
No 204
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=77.05 E-value=2.6 Score=32.79 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 25 KNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 25 ~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+.||+|++ ++--. -..-...+-++..++.|+|||++.+-
T Consensus 200 ~~~fD~IfCRNVLIY------Fd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 200 LGKFDLIFCRNVLIY------FDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cCCCCEEEEcceEEe------eCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 356999996 33111 11223577899999999999999984
No 205
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=75.90 E-value=14 Score=32.46 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=55.0
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEecc
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p 103 (132)
..-++|+|+.|.--. +...-...+.---+.+...|.++|.++.-+-.... ...-..++..+-+.|+.|..+++..-
T Consensus 412 ~~~~idLiv~DmEV~---d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l-~~~~~~il~~lg~~F~~V~l~qT~~S 487 (675)
T PF14314_consen 412 HNLSIDLIVMDMEVR---DDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRL-LSPDYNILDLLGRYFKSVELVQTQFS 487 (675)
T ss_pred cCCcccEEEEeceec---ChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhh-hcchhhHHHHHHhhcCceEEEECCCC
Confidence 456899999997432 11111222333344566788999999864311000 11234788899999999999888765
Q ss_pred CcCCCceeEEEeecCCC
Q psy4593 104 TYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 104 ~~~~~~~~f~~as~~~~ 120 (132)
+--+-.+ .+++++...
T Consensus 488 Ss~TSEV-Ylv~~~~~~ 503 (675)
T PF14314_consen 488 SSFTSEV-YLVFQKLKK 503 (675)
T ss_pred CCCceEE-EEEEecccC
Confidence 5433223 466666544
No 206
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=75.82 E-value=2.5 Score=32.17 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=56.7
Q ss_pred CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE--ecCCC--CC-ChHH
Q psy4593 7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS--QAGTL--WY-SLDC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~--~~~~~--~~-~~~~ 80 (132)
+|+--+++||+.--+-. --+..|+|+.|...|. . .+-+..+++.-|++||.+++ .+.|. .. ....
T Consensus 122 ~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~----Q-----a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v 192 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPD----Q-----ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV 192 (229)
T ss_dssp TTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTT----H-----HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH
T ss_pred CceeeeeccCCChHHhhcccccccEEEecCCChH----H-----HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH
Confidence 66777899998654331 2358999999997762 1 25567788889999997764 33222 12 3457
Q ss_pred HHHHHHHHHhh-CCCceEeEEeccCcCCCce
Q psy4593 81 VGNTLQHCASV-FPRVAYGATCVPTYPSGQI 110 (132)
Q Consensus 81 ~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~ 110 (132)
+++.+++|++. |.-... ..+-.|..+-.
T Consensus 193 f~~e~~~L~~~~~~~~e~--i~LePy~~dH~ 221 (229)
T PF01269_consen 193 FAEEVKKLKEEGFKPLEQ--ITLEPYERDHA 221 (229)
T ss_dssp HHHHHHHHHCTTCEEEEE--EE-TTTSTTEE
T ss_pred HHHHHHHHHHcCCChheE--eccCCCCCCcE
Confidence 89999999984 664442 33444544333
No 207
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=75.61 E-value=7.5 Score=30.88 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=39.3
Q ss_pred EEEEccHHHH--hcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 10 LSARQDCTDF--MSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 10 ~v~~~Dg~~~--l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
+.+.+||... +.. -+-+.+++|+ -+++- -+.+.+ =..-++.+.++|.|||.++ +++-||+. .+.-+.+
T Consensus 191 ~f~~~dAfd~~~l~~-l~p~P~l~iVsGL~El----F~Dn~l-v~~sl~gl~~al~pgG~lI-yTgQPwHP--Qle~IAr 261 (311)
T PF12147_consen 191 RFEQGDAFDRDSLAA-LDPAPTLAIVSGLYEL----FPDNDL-VRRSLAGLARALEPGGYLI-YTGQPWHP--QLEMIAR 261 (311)
T ss_pred EEEecCCCCHhHhhc-cCCCCCEEEEecchhh----CCcHHH-HHHHHHHHHHHhCCCcEEE-EcCCCCCc--chHHHHH
Confidence 5666676654 333 2345666663 33321 111111 1335778999999999996 44556653 2333444
Q ss_pred HHHhh
Q psy4593 87 HCASV 91 (132)
Q Consensus 87 ~l~~v 91 (132)
.|.++
T Consensus 262 ~LtsH 266 (311)
T PF12147_consen 262 VLTSH 266 (311)
T ss_pred HHhcc
Confidence 44443
No 208
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=74.32 E-value=8.4 Score=30.70 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=47.8
Q ss_pred EccHHHHhcCCCCCeecEEEE-cC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC----------CC--C--
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVS-GA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT----------LW--Y-- 76 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~-D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~----------~~--~-- 76 (132)
...|.+.|.. .+.||+|++ -+ |.- .. -.+.++.+++.|++||-++..+.. |- +
T Consensus 170 lplgvE~Lp~--~~~FDtVF~MGVLYHr---r~------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~ 238 (315)
T PF08003_consen 170 LPLGVEDLPN--LGAFDTVFSMGVLYHR---RS------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK 238 (315)
T ss_pred cCcchhhccc--cCCcCEEEEeeehhcc---CC------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC
Confidence 3468887776 468999995 22 211 11 257799999999999999854211 00 0
Q ss_pred C-----hHHHHHHHHHHHhh-CCCceEeEE
Q psy4593 77 S-----LDCVGNTLQHCASV-FPRVAYGAT 100 (132)
Q Consensus 77 ~-----~~~~~~~~~~l~~v-F~~v~~~~~ 100 (132)
. .+....+.+-|++. |.+|++...
T Consensus 239 m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 239 MRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred CCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 0 11346666777665 888876443
No 209
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=74.28 E-value=3.8 Score=29.45 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.8
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTLW 75 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~~ 75 (132)
-.+++..++++|+|+|.++++.+...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh
Confidence 36778999999999999999875543
No 210
>PTZ00357 methyltransferase; Provisional
Probab=74.08 E-value=3.2 Score=36.87 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCCcEEEEccHHHHhcCC--C-------CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC----CcE
Q psy4593 6 GYPVLSARQDCTDFMSGP--V-------KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP----GGI 66 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~--~-------~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p----~Gi 66 (132)
+.+|+||..|.|.|-... . -.+.|+||..+-.. -...-.++|-+..+.+.|++ +||
T Consensus 762 G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGS-----FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 762 GHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGS-----LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred CCeEEEEeCcccccccccccccccccccccccceehHhhhcc-----cccccCCHHHHHHHHHhhhhhcccccc
Confidence 568999999999993220 0 02799999876433 11234478888888888876 887
No 211
>KOG2198|consensus
Probab=73.37 E-value=15 Score=30.02 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred CCeecEEEEcCCCCC-CCCCCC---------------cccccHHHHHHHHHhcCCCcEEEEecCC--CCCChHHHHHHHH
Q psy4593 25 KNMCGLVVSGAAGPG-RVVCPA---------------ESLFQASYFELMSRALRPGGIVCSQAGT--LWYSLDCVGNTLQ 86 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~-~~~~~~---------------~~L~t~eF~~~~~~~L~p~Gil~~~~~~--~~~~~~~~~~~~~ 86 (132)
...||=|++|+.=.. ....-. -+......++..-+.|++||.+|--++| |-.+.....++++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~ 313 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQ 313 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHH
Confidence 358999999975111 001111 1334556778889999999999866544 3334455666666
Q ss_pred HHHhhCCCc
Q psy4593 87 HCASVFPRV 95 (132)
Q Consensus 87 ~l~~vF~~v 95 (132)
.+.-.|+=|
T Consensus 314 ~~~~~~~lv 322 (375)
T KOG2198|consen 314 KVGGAVELV 322 (375)
T ss_pred HhcCcccce
Confidence 655555533
No 212
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=72.50 E-value=3.1 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=20.0
Q ss_pred CCCcEEEEccHHHHhcCCCCC-eecEEEEcCCCCC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKN-MCGLVVSGAAGPG 39 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~ 39 (132)
..|++.+++|..+.+++.... .+|+|+.+. ||
T Consensus 47 ~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP--PW 79 (163)
T PF09445_consen 47 ADNIDFICGDFFELLKRLKSNKIFDVVFLSP--PW 79 (163)
T ss_dssp GGGEEEEES-HHHHGGGB------SEEEE-----B
T ss_pred CCcEEEEeCCHHHHHhhccccccccEEEECC--CC
Confidence 568999999999998773222 389999997 55
No 213
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=72.45 E-value=4.3 Score=29.10 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=31.1
Q ss_pred CCeecEEEEcCCCCCCCC-CCC-----cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 25 KNMCGLVVSGAAGPGRVV-CPA-----ESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~-~~~-----~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+||.||-.-+....+. ... ..-+=..||+.+++.|+++|-+.+-
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 478999998875431000 011 1223489999999999999988764
No 214
>KOG3178|consensus
Probab=71.84 E-value=3.2 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy4593 51 ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+++|++.|.|+|.+++
T Consensus 255 vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 255 VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 7899999999999999886
No 215
>KOG3045|consensus
Probab=71.77 E-value=12 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhh-CCCc
Q psy4593 51 ASYFELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASV-FPRV 95 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~v-F~~v 95 (132)
.+|++.+.|+|++||.+-+- ..|-+.+ .+.+.+.+..- |...
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~d---v~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSD---VKGFVRALTKLGFDVK 287 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhccc---HHHHHHHHHHcCCeee
Confidence 68999999999999998763 3333323 33455555543 5543
No 216
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=71.52 E-value=4.9 Score=29.91 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=33.0
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCC--cEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPG--GIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--Gil~~~ 70 (132)
.+|++++-+|-. +. -+. +|+|++ .+...| +. =-....+++++++|+|| |.+++.
T Consensus 142 ~~rv~~~~gd~f---~~-~P~-~D~~~l~~vLh~~----~d--~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 142 ADRVEFVPGDFF---DP-LPV-ADVYLLRHVLHDW----SD--EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp TTTEEEEES-TT---TC-CSS-ESEEEEESSGGGS-----H--HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ccccccccccHH---hh-hcc-ccceeeehhhhhc----ch--HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 357777777755 33 334 888885 222111 01 11366799999999988 998875
No 217
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=71.26 E-value=10 Score=31.22 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=42.5
Q ss_pred ecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 28 CGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
-|++|++++=.. -..++......+|.+.+++.|.+||.+++.+-. ..-.++++..|+..
T Consensus 181 ~DvLI~EsTYg~-~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa----~graQEll~~L~~~ 239 (427)
T COG1236 181 IDVLIVESTYGD-RLHPNRDEVERRFIESVKAALERGGTVLIPAFA----LGRAQELLLILREL 239 (427)
T ss_pred CcEEEEecccCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccc----ccHHHHHHHHHHHH
Confidence 599999987321 045666777788999999999999999986422 22356666666654
No 218
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=69.71 E-value=23 Score=23.14 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=35.6
Q ss_pred eecEEEEcCCCCCCC-C-C------CCcccccHHHHHHHHHhcCCCcEEEEecCCCCC-ChHHHHHHHHHHHhhC
Q psy4593 27 MCGLVVSGAAGPGRV-V-C------PAESLFQASYFELMSRALRPGGIVCSQAGTLWY-SLDCVGNTLQHCASVF 92 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~-~-~------~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~-~~~~~~~~~~~l~~vF 92 (132)
+||+||-..+=-... . . -...+| .-|++.+.+.| +|.++.=..+.|. .......+.+.|.+..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY-~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~ 73 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLY-ILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNT 73 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHH-HHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCC
Confidence 589999775411000 0 0 012333 45888888888 9998754444566 5455555556655443
No 219
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=68.78 E-value=16 Score=29.94 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe--EEecc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG--ATCVP 103 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~--~~~~p 103 (132)
.+=|.|+.-+... |- |+=.|+.+..+|+.||.+++-+ |. -+..-++..+|+++|+++.+. ....+
T Consensus 115 ~k~~~lv~AV~Ga----GK-----TEMif~~i~~al~~G~~vciAS--PR--vDVclEl~~Rlk~aF~~~~I~~Lyg~S~ 181 (441)
T COG4098 115 QKEDTLVWAVTGA----GK-----TEMIFQGIEQALNQGGRVCIAS--PR--VDVCLELYPRLKQAFSNCDIDLLYGDSD 181 (441)
T ss_pred hcCcEEEEEecCC----Cc-----hhhhHHHHHHHHhcCCeEEEec--Cc--ccchHHHHHHHHHhhccCCeeeEecCCc
Confidence 4567777765432 21 4456999999999999999842 43 346678999999999976552 22333
Q ss_pred CcCCCceeEEEeec
Q psy4593 104 TYPSGQIGFVLGSQ 117 (132)
Q Consensus 104 ~~~~~~~~f~~as~ 117 (132)
+| ..-.|++|+.
T Consensus 182 ~~--fr~plvVaTt 193 (441)
T COG4098 182 SY--FRAPLVVATT 193 (441)
T ss_pred hh--ccccEEEEeh
Confidence 33 2345666643
No 220
>KOG1099|consensus
Probab=68.69 E-value=17 Score=28.24 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCeecEEEEcCCCCCCCCCCCc--ccccHH----HHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAE--SLFQAS----YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~--~L~t~e----F~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
.++-|+|++|..-.. .+... +....+ -+.....+|+|||-++.- .++. .-..-+...|+..|..|..+
T Consensus 113 gekAdlVvcDGAPDv--TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK---ifRg-~~tslLysql~~ff~kv~~~ 186 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDV--TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK---IFRG-RDTSLLYSQLRKFFKKVTCA 186 (294)
T ss_pred CCCccEEEeCCCCCc--cccccHHHHHHHHHHHHHHHHHhheecCCCeeehh---hhcc-CchHHHHHHHHHHhhceeee
Confidence 368999999965221 23321 222222 234456789999999963 2222 22455667888889998875
Q ss_pred EEeccCcCCCceeEEEeecC
Q psy4593 99 ATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 99 ~~~~p~~~~~~~~f~~as~~ 118 (132)
.- -.+.++..-.|++|...
T Consensus 187 KP-rsSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 187 KP-RSSRNSSIEAFVVCLGY 205 (294)
T ss_pred cC-Cccccccceeeeeeccc
Confidence 42 23445556789999875
No 221
>KOG1596|consensus
Probab=68.61 E-value=16 Score=28.47 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=48.9
Q ss_pred CCCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCC---CCCh
Q psy4593 5 RGYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTL---WYSL 78 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~---~~~~ 78 (132)
..+++--+++||+.=-+-. .-..-|+|+.|+..|. .+ +-..-++..-|+++|-+++. +.|. ....
T Consensus 203 kRtNiiPIiEDArhP~KYRmlVgmVDvIFaDvaqpd----q~-----RivaLNA~~FLk~gGhfvisikancidstv~ae 273 (317)
T KOG1596|consen 203 KRTNIIPIIEDARHPAKYRMLVGMVDVIFADVAQPD----QA-----RIVALNAQYFLKNGGHFVISIKANCIDSTVFAE 273 (317)
T ss_pred ccCCceeeeccCCCchheeeeeeeEEEEeccCCCch----hh-----hhhhhhhhhhhccCCeEEEEEecccccccccHH
Confidence 3467777899987632221 1246899999998873 11 11223455569999998864 2221 1234
Q ss_pred HHHHHHHHHHHhh-CC
Q psy4593 79 DCVGNTLQHCASV-FP 93 (132)
Q Consensus 79 ~~~~~~~~~l~~v-F~ 93 (132)
..++.-++.|++. +.
T Consensus 274 ~vFa~Ev~klqee~lk 289 (317)
T KOG1596|consen 274 AVFAAEVKKLQEEQLK 289 (317)
T ss_pred HHHHHHHHHHHHhccC
Confidence 5677788888854 54
No 222
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=68.54 E-value=14 Score=29.63 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=35.0
Q ss_pred CcEEEEccHHHHhcCCC--------------CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPV--------------KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~--------------~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.++++... ..+||+|++|.+.. + ...+..+.+.+ +++++.+-+
T Consensus 255 ~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~----G-----~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 255 NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA----G-----LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC----C-----CcHHHHHHHHc---cCCEEEEEe
Confidence 78999999999985411 12599999998532 2 23555566544 788876643
No 223
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=68.03 E-value=19 Score=28.84 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=34.6
Q ss_pred CcEEEEccHHHHhcCC---------C-----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGP---------V-----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~---------~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.+++... . ..+||+|++|.+.. +. ..+..+.+. +|++++.+-+
T Consensus 246 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~----G~-----~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 246 NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA----GL-----DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCC----CC-----cHHHHHHHH---cCCcEEEEEc
Confidence 6899999999998641 0 12489999998632 32 244455544 4788887743
No 224
>KOG2361|consensus
Probab=67.45 E-value=24 Score=27.41 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=41.8
Q ss_pred CCCCCcEEEEcc----HHHHhcCC---CCCeecEEEEcCCCCCCCCCCCccc----------------ccHHHHHHHHHh
Q psy4593 4 YRGYPVLSARQD----CTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESL----------------FQASYFELMSRA 60 (132)
Q Consensus 4 ~~d~rv~v~~~D----g~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L----------------~t~eF~~~~~~~ 60 (132)
..|+++.++..| |.+.+++. .+.+.-.=+.|++.|.....+.... =-..-++.+++.
T Consensus 93 ~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 93 SPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred CCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 356778888865 78888773 2245556667777664211111110 114457889999
Q ss_pred cCCCcEEEEe
Q psy4593 61 LRPGGIVCSQ 70 (132)
Q Consensus 61 L~p~Gil~~~ 70 (132)
|+|||.++..
T Consensus 173 lKPGG~llfr 182 (264)
T KOG2361|consen 173 LKPGGSLLFR 182 (264)
T ss_pred hCCCcEEEEe
Confidence 9999999874
No 225
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=67.43 E-value=29 Score=27.92 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=58.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhhCCCceEeEEeccC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPT 104 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~ 104 (132)
++.|+|++-- | ..|.+.+++.+-++.+.+.+..++++++- +-..+.. ......+. ..+++.+.++....
T Consensus 144 ~~~~lv~i~n--P---NNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~----~~~~~l~~-~~~nlivlRTfSKa 213 (356)
T COG0079 144 DKTKLVFLCN--P---NNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP----ESSLELLK-YPPNLIVLRTFSKA 213 (356)
T ss_pred cCCCEEEEeC--C---CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC----chhhhhcc-CCCCEEEEEecHHh
Confidence 4789999764 3 35677899999999999999998888874 2111212 22333444 56678888888776
Q ss_pred c--CCCceeEEEeecC
Q psy4593 105 Y--PSGQIGFVLGSQL 118 (132)
Q Consensus 105 ~--~~~~~~f~~as~~ 118 (132)
| +|-..||++++..
T Consensus 214 ~gLAGlRlGy~ia~~~ 229 (356)
T COG0079 214 FGLAGLRVGYAIANPE 229 (356)
T ss_pred hhcchhceeeccCCHH
Confidence 6 4667999888765
No 226
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=66.75 E-value=18 Score=27.10 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCCC-----hHHHHHHHHHHHhhCCC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTLWYS-----LDCVGNTLQHCASVFPR 94 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~~~~-----~~~~~~~~~~l~~vF~~ 94 (132)
+..+|+.+.++|++||+++++. |+.. .+.-..+-+.||+.-|+
T Consensus 120 ~~~lf~~a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp~ 167 (204)
T PF06080_consen 120 VEGLFAGAARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDPE 167 (204)
T ss_pred HHHHHHHHHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCCC
Confidence 5778999999999999999985 4431 22335566667666553
No 227
>PHA02754 hypothetical protein; Provisional
Probab=66.27 E-value=6 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy4593 51 ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~ 69 (132)
.||++.++++|.+-|+++-
T Consensus 17 ke~MRelkD~LSe~GiYi~ 35 (67)
T PHA02754 17 KEAMRELKDILSEAGIYID 35 (67)
T ss_pred HHHHHHHHHHHhhCceEEE
Confidence 4778999999999999974
No 228
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.18 E-value=24 Score=27.79 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=42.9
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC--CCChHHHHH
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGN 83 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~--~~~~~~~~~ 83 (132)
+|+++--|..+-|... -.+.||+|++-+.- .++++++ +.++++|+|+|++=..-. ....+..+.
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~--------vh~L~p~----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~ 268 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSM--------VHFLKPE----LFQALAPDAVLVVETAKFMVDLRKEQLQE 268 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhh--------HhhcchH----HHHHhCCCCEEEEEcchhheeCCHHHHHH
Confidence 3444446666666442 35789999987642 2566777 445789999999854221 124455555
Q ss_pred HHHHHHh
Q psy4593 84 TLQHCAS 90 (132)
Q Consensus 84 ~~~~l~~ 90 (132)
..+.+++
T Consensus 269 F~~kv~e 275 (289)
T PF14740_consen 269 FVKKVKE 275 (289)
T ss_pred HHHHHHH
Confidence 5554443
No 229
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=66.05 E-value=29 Score=27.49 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=38.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHH-hhCCCceE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA-SVFPRVAY 97 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~-~vF~~v~~ 97 (132)
++||+|+...- +..+ ..+...++++|+|||.+++-. . . .+....+...+. +.|..+..
T Consensus 228 ~~~DvIVANIL--------A~vl--~~La~~~~~~lkpgg~lIlSG--I-l-~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 228 GPFDVIVANIL--------AEVL--VELAPDIKRLLKPGGRLILSG--I-L-EDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred CcccEEEehhh--------HHHH--HHHHHHHHHHcCCCceEEEEe--e-h-HhHHHHHHHHHHhCCCeEeEE
Confidence 68999998863 1122 477889999999999999743 1 1 123455666663 35665544
No 230
>KOG2798|consensus
Probab=65.34 E-value=4.8 Score=32.37 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=37.2
Q ss_pred cEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 9 VLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+.+-.+|-.++.... ..+.||+|+.--|-. -+.. --|+++.+..+|+|||+-+ |.|.
T Consensus 240 fsicaGDF~evy~~s~~~~~~d~VvTcfFID-----Ta~N--ileYi~tI~~iLk~GGvWi-NlGP 297 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFID-----TAHN--ILEYIDTIYKILKPGGVWI-NLGP 297 (369)
T ss_pred ccccccceeEEecCcCCCCccceEEEEEEee-----chHH--HHHHHHHHHHhccCCcEEE-eccc
Confidence 334457777766551 235799999654421 1222 2699999999999999986 4443
No 231
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.15 E-value=15 Score=26.29 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHH----HHHHHhcCCCcEEEE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYF----ELMSRALRPGGIVCS 69 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~----~~~~~~L~p~Gil~~ 69 (132)
.++||+||+|. | +.+.|.. +.++..+++++-++.
T Consensus 84 ~~~~d~vv~DP--P---------Fl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 84 KGKFDVVVIDP--P---------FLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CCCceEEEECC--C---------CCCHHHHHHHHHHHHHHhCccceEEE
Confidence 46899999996 3 3566666 566666677666654
No 232
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=63.97 E-value=5 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhh-CCC
Q psy4593 51 ASYFELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASV-FPR 94 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~v-F~~ 94 (132)
.+|++.+.|+|++||++-+- +.|-+.+ ....++.+.+. |..
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~~---~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFEN---VKQFIKALKKLGFKL 180 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S----HHHHHHHHHCTTEEE
T ss_pred HHHHHHHHheeccCcEEEEEEecccCcC---HHHHHHHHHHCCCeE
Confidence 68999999999999999875 3333333 35555666554 443
No 233
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.15 E-value=5.7 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=37.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE-ecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS-QAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~-~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
+.||+||+|..-. ....+.|+.+ ++.+++.++|+=++.+ .+.. . .......+++.+.-+
T Consensus 181 ~~~DvvIvDTAGR---l~ide~Lm~E--l~~Ik~~~~P~E~llVvDam~--G--QdA~~~A~aF~e~l~ 240 (451)
T COG0541 181 EGYDVVIVDTAGR---LHIDEELMDE--LKEIKEVINPDETLLVVDAMI--G--QDAVNTAKAFNEALG 240 (451)
T ss_pred cCCCEEEEeCCCc---ccccHHHHHH--HHHHHhhcCCCeEEEEEeccc--c--hHHHHHHHHHhhhcC
Confidence 6799999998654 3455555433 6789999999999765 3311 1 123445555555543
No 234
>KOG3191|consensus
Probab=62.91 E-value=26 Score=26.12 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=53.7
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCC-------------CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVV-------------CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~-------------~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
...++.+++.|-..-|+. ++-||++.... -|.... +-.+.-.+..++..+.+.|+|.|++-+.
T Consensus 91 n~~~~~~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 91 NRVHIDVVRTDLLSGLRN---ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred cCCccceeehhHHhhhcc---CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 345678899998887766 78999997643 231000 1112334678889999999999999886
Q ss_pred cCCCCCChHHHHHHHHHHHhh-CCCc
Q psy4593 71 AGTLWYSLDCVGNTLQHCASV-FPRV 95 (132)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~v-F~~v 95 (132)
+... .-..++++.+++- |...
T Consensus 168 ~~~~----N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 168 ALRA----NKPKEILKILEKKGYGVR 189 (209)
T ss_pred ehhh----cCHHHHHHHHhhccccee
Confidence 4221 1235666666654 5433
No 235
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=62.52 E-value=42 Score=25.50 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=35.8
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+.|+..++. . +-|+|++|.+-| .+- ..+|+..++..=-+..|+++-+.+
T Consensus 36 ~ea~~~i~~-~--~pDLILLDiYmP---d~~-----Gi~lL~~ir~~~~~~DVI~iTAA~ 84 (224)
T COG4565 36 EEAKMIIEE-F--KPDLILLDIYMP---DGN-----GIELLPELRSQHYPVDVIVITAAS 84 (224)
T ss_pred HHHHHHHHh-h--CCCEEEEeeccC---CCc-----cHHHHHHHHhcCCCCCEEEEeccc
Confidence 456666665 2 349999999988 332 268899998888888898886544
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.98 E-value=47 Score=25.21 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=50.4
Q ss_pred CCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc--EEEEecCCCC--CC-hH
Q psy4593 6 GYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG--IVCSQAGTLW--YS-LD 79 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G--il~~~~~~~~--~~-~~ 79 (132)
.+|+--+.+||+.=-+-. --+.-|+|+.|...|. + ..=+-.++..-|+++| ++++-+-|.. .+ .+
T Consensus 123 R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~----Q-----a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~ 193 (231)
T COG1889 123 RPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPN----Q-----AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE 193 (231)
T ss_pred CCCceeeecccCCcHHhhhhcccccEEEEecCCch----H-----HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH
Confidence 356667778876421110 1256899999998772 2 2455677888899999 6666543332 23 45
Q ss_pred HHHHHHHHHHhhC
Q psy4593 80 CVGNTLQHCASVF 92 (132)
Q Consensus 80 ~~~~~~~~l~~vF 92 (132)
.++..+++|++..
T Consensus 194 vf~~ev~kL~~~~ 206 (231)
T COG1889 194 VFKDEVEKLEEGG 206 (231)
T ss_pred HHHHHHHHHHhcC
Confidence 6788888888764
No 237
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=61.62 E-value=21 Score=26.98 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=27.5
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGI 66 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi 66 (132)
.+++||+|..-+-=- ..|.+--.-+..+.+++.|+|+|.
T Consensus 101 ~~e~FdvIs~SLVLN----fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 101 ESEKFDVISLSLVLN----FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cccceeEEEEEEEEe----eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 457999999765311 222233356789999999999999
No 238
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=60.17 E-value=37 Score=28.54 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCcEEEE
Q psy4593 52 SYFELMSRALRPGGIVCS 69 (132)
Q Consensus 52 eF~~~~~~~L~p~Gil~~ 69 (132)
=|++.+.+.|++||.+++
T Consensus 177 ~f~~~~~~lL~~~G~~~~ 194 (524)
T TIGR02987 177 VFEEISLEIANKNGYVSI 194 (524)
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 355789999999999875
No 239
>KOG1975|consensus
Probab=59.72 E-value=18 Score=29.29 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 51 ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
+-+++.+.++|+|||+++.-. | + ...|+++|++.
T Consensus 217 r~~l~Nva~~LkpGG~FIgTi--P--d---sd~Ii~rlr~~ 250 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTI--P--D---SDVIIKRLRAG 250 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEec--C--c---HHHHHHHHHhc
Confidence 457899999999999998643 2 1 24566666654
No 240
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=59.72 E-value=14 Score=26.58 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=35.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--c--ccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--E--SLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~--~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+.+...|+.+.- . .++.+|+||.|.+=. .... . .-+-.+|++.+++.|++..++++.
T Consensus 88 ~~i~~~~~D~~~l~-~-~~~~~d~IvtnPPyG---~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 DYIDFIQWDARELP-L-PDGSVDAIVTNPPYG---RRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGEEEEE--GGGGG-G-TTSBSCEEEEE--ST---TSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CceEEEecchhhcc-c-ccCCCCEEEECcchh---hhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 34678888988864 2 357999999998532 2111 1 122345788899999995555553
No 241
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=58.96 E-value=9.1 Score=25.97 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCCCC-Ccc--cccHHHHHHHHHhcCCCcEEEEe
Q psy4593 30 LVVSGAAGPGRVVCP-AES--LFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 30 vIi~D~~dp~~~~~~-~~~--L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++|-..+| + +| ... ...+.+++...+.|+++|+-+..
T Consensus 29 ~vvv~f~a~w-c-~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~k 70 (120)
T cd03065 29 LCLLYHEPVE-S-DKEAQKQFQMEELVLELAAQVLEDKGIGFGL 70 (120)
T ss_pred eEEEEECCCc-C-ChhhChhhcchhhHHHHHHHHhhcCCCEEEE
Confidence 5556655443 2 33 133 67888999999999999976654
No 242
>KOG0926|consensus
Probab=57.05 E-value=19 Score=32.79 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=33.2
Q ss_pred cccHHHHHH---HHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593 48 LFQASYFEL---MSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 48 L~t~eF~~~---~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v 95 (132)
=|..|-|+. +++.|-||||++.=+ .......+.+.||+.||.+
T Consensus 463 DYi~eAfrKtc~IH~kLP~G~ILVFvT-----GQqEV~qL~~kLRK~~p~~ 508 (1172)
T KOG0926|consen 463 DYIAEAFRKTCKIHKKLPPGGILVFVT-----GQQEVDQLCEKLRKRFPES 508 (1172)
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEe-----ChHHHHHHHHHHHhhCccc
Confidence 567777875 678899999999633 3346888999999998853
No 243
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=56.89 E-value=9.9 Score=29.91 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEecc
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p 103 (132)
.+.+||+|+...... .| .+....+.++|+|||.+++-. . .. +....+.+.+++-|.-+.. .
T Consensus 222 ~~~~~dlvvANI~~~--------vL--~~l~~~~~~~l~~~G~lIlSG--I-l~-~~~~~v~~a~~~g~~~~~~---~-- 282 (295)
T PF06325_consen 222 VEGKFDLVVANILAD--------VL--LELAPDIASLLKPGGYLILSG--I-LE-EQEDEVIEAYKQGFELVEE---R-- 282 (295)
T ss_dssp CCS-EEEEEEES-HH--------HH--HHHHHHCHHHEEEEEEEEEEE--E-EG-GGHHHHHHHHHTTEEEEEE---E--
T ss_pred ccccCCEEEECCCHH--------HH--HHHHHHHHHhhCCCCEEEEcc--c-cH-HHHHHHHHHHHCCCEEEEE---E--
Confidence 347999999887532 12 456777889999999999842 1 11 2245566666553332221 1
Q ss_pred CcCCCceeEEEeec
Q psy4593 104 TYPSGQIGFVLGSQ 117 (132)
Q Consensus 104 ~~~~~~~~f~~as~ 117 (132)
. .+.|..+++.|
T Consensus 283 ~--~~~W~~l~~~K 294 (295)
T PF06325_consen 283 E--EGEWVALVFKK 294 (295)
T ss_dssp E--ETTEEEEEEEE
T ss_pred E--ECCEEEEEEEe
Confidence 1 24676665543
No 244
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=56.45 E-value=73 Score=23.39 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=31.9
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
--...||.+.++.......|+|++|..-|. .-..|..+.++ ...|+.
T Consensus 29 v~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~--------~~G~e~~~~l~-~~~p~~ 75 (211)
T COG2197 29 VGEASNGEEALDLARELKPDVVLLDLSMPG--------MDGLEALKQLR-ARGPDI 75 (211)
T ss_pred EEEeCCHHHHHHHhhhcCCCEEEEcCCCCC--------CChHHHHHHHH-HHCCCC
Confidence 334466888887645678999999998872 33456677777 444443
No 245
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=56.45 E-value=20 Score=25.76 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=31.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP 63 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p 63 (132)
.+++++.+|+.+.+....+++||+|++-..=.+ . . -...+++.+.+.+++
T Consensus 55 ~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~--~--~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 55 RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA--T--R---NPEEILDEMLRVGRH 104 (194)
T ss_pred cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc--C--c---CHHHHHHHHHHhCCe
Confidence 357888899877553224578999997532110 1 1 135677778777764
No 246
>PRK04296 thymidine kinase; Provisional
Probab=56.39 E-value=14 Score=26.77 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+..+.+++ .++.+|+|++|-. ++++.+-...+.+.|++.|+-++
T Consensus 67 ~~~~~~~~-~~~~~dvviIDEa----------q~l~~~~v~~l~~~l~~~g~~vi 110 (190)
T PRK04296 67 DIFELIEE-EGEKIDCVLIDEA----------QFLDKEQVVQLAEVLDDLGIPVI 110 (190)
T ss_pred HHHHHHHh-hCCCCCEEEEEcc----------ccCCHHHHHHHHHHHHHcCCeEE
Confidence 34444444 4568999999953 45556645556677888885443
No 247
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=56.35 E-value=22 Score=22.19 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=29.4
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.+.+....+..+|+|++|...+. .-..++.+.+++.- ++.-+++
T Consensus 30 ~~~~~~~~~~~~~~~d~iiid~~~~~--------~~~~~~~~~i~~~~-~~~~ii~ 76 (112)
T PF00072_consen 30 SSGEEALELLKKHPPDLIIIDLELPD--------GDGLELLEQIRQIN-PSIPIIV 76 (112)
T ss_dssp SSHHHHHHHHHHSTESEEEEESSSSS--------SBHHHHHHHHHHHT-TTSEEEE
T ss_pred CCHHHHHHHhcccCceEEEEEeeecc--------cccccccccccccc-ccccEEE
Confidence 44444443322356999999976551 33578899998777 5555444
No 248
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.35 E-value=53 Score=27.27 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=39.2
Q ss_pred CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.++..+. ....+|+||+|.+.. |. .+++.+.+. .++|..|+-+-
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~----G~-----~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRA----GA-----DREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEECCCCC----CC-----CHHHHHHHH-hcCCCcEEEEe
Confidence 34889999999999883 236899999998643 22 356677665 57788877664
No 249
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=55.13 E-value=18 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=18.4
Q ss_pred hhCCCceEeEEeccCcCCCceeE
Q psy4593 90 SVFPRVAYGATCVPTYPSGQIGF 112 (132)
Q Consensus 90 ~vF~~v~~~~~~~p~~~~~~~~f 112 (132)
+-|.+-..|....|.||.|.|-|
T Consensus 25 E~F~EG~MYLvaL~dYP~GiWFF 47 (62)
T PF10781_consen 25 EPFNEGTMYLVALEDYPAGIWFF 47 (62)
T ss_pred eeccCcEEEEEEcCcCCcceEEE
Confidence 34777778999999999998843
No 250
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=54.21 E-value=42 Score=24.43 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=31.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++.....++|+|++|..-|. +-..++.+.+++...+..++++
T Consensus 35 ~a~~~~~al~~~~~~~pdlvllD~~mp~--------~~gle~~~~l~~~~~~~~iivl 84 (225)
T PRK10046 35 LAGNLAQARMMIERFKPGLILLDNYLPD--------GRGINLLHELVQAHYPGDVVFT 84 (225)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCC--------CcHHHHHHHHHhcCCCCCEEEE
Confidence 4466666655433467999999987662 2245677777765444455554
No 251
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=54.10 E-value=33 Score=25.33 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCcEEEEe--cCCCCCChHHHHHHHHHHHhhCC
Q psy4593 51 ASYFELMSRALRPGGIVCSQ--AGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~--~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.--|+.+...|+|+.|+++- .++.|...+.+.+-.+++++.|.
T Consensus 33 ~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~ 77 (193)
T cd08164 33 GHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFF 77 (193)
T ss_pred HHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhc
Confidence 34478899999999999975 35567767778888899999874
No 252
>PRK06498 isocitrate lyase; Provisional
Probab=54.04 E-value=43 Score=28.53 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 54 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
...|..+++|+.=+ +|.+....+....+.+.+.++++||+..+.+...|+|
T Consensus 335 I~r~i~a~apyADL-lW~ET~~P~~~qa~~fa~~Ir~~~P~~~LaYN~SPSF 385 (531)
T PRK06498 335 VLDCITSLQNGADL-LWIETEKPHVAQIAGMVNRIREVVPNAKLVYNNSPSF 385 (531)
T ss_pred HHHHHHhhcCcCcE-EEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCc
Confidence 33444456677644 5776666677889999999999999999988889998
No 253
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=53.81 E-value=36 Score=27.98 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCCCCCcEEEEccHHHHhcCC-----------CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 3 SYRGYPVLSARQDCTDFMSGP-----------VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+|.+..+.+..+|.-.|.+.. -.+.||+||+|=-|... ... .+..+..++++.+++|..+.-+
T Consensus 167 aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP-~~~-----d~~L~~Av~~ark~~g~~IylT 240 (441)
T COG4098 167 AFSNCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFP-FSD-----DQSLQYAVKKARKKEGATIYLT 240 (441)
T ss_pred hhccCCeeeEecCCchhccccEEEEehHHHHHHHhhccEEEEecccccc-ccC-----CHHHHHHHHHhhcccCceEEEe
Confidence 456666777778877776542 13579999988766420 111 2444678999999999887644
Q ss_pred CCC
Q psy4593 72 GTL 74 (132)
Q Consensus 72 ~~~ 74 (132)
..+
T Consensus 241 ATp 243 (441)
T COG4098 241 ATP 243 (441)
T ss_pred cCC
Confidence 333
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=53.79 E-value=42 Score=25.81 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=26.4
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
+++.+..|.+.=|-..-.++||+++.|.+- .+. .+ .=|...+.++|+..|
T Consensus 93 ~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy-----T~~-G~--~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 93 PIEAVHYDLRDPLPEELRGKFDVFFTDPPY-----TPE-GL--KLFLSRGIEALKGEG 142 (243)
T ss_dssp -EEEE---TTS---TTTSS-BSEEEE---S-----SHH-HH--HHHHHHHHHTB-STT
T ss_pred ceEEEEecccccCCHHHhcCCCEEEeCCCC-----CHH-HH--HHHHHHHHHHhCCCC
Confidence 377788887777655345899999999732 221 11 447888999999877
No 255
>KOG2484|consensus
Probab=53.02 E-value=66 Score=26.79 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=41.7
Q ss_pred eecEEE--EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc----EEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 27 MCGLVV--SGAAGPGRVVCPAESLFQASYFELMSRALRPGG----IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 27 ~yDvIi--~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G----il~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.=|||| +|+-|| .+--. .+.=...|..+| ||++|-.. ....+.+..++..|++.||.|-+
T Consensus 146 ~sDVVleVlDARDP---lgtR~-------~~vE~~V~~~~gnKkLILVLNK~D-LVPrEv~e~Wl~YLr~~~ptv~f 211 (435)
T KOG2484|consen 146 ASDVVLEVLDARDP---LGTRC-------PEVEEAVLQAHGNKKLILVLNKID-LVPREVVEKWLVYLRREGPTVAF 211 (435)
T ss_pred hhheEEEeeeccCC---CCCCC-------hhHHHHHHhccCCceEEEEeehhc-cCCHHHHHHHHHHHHhhCCccee
Confidence 469998 799999 33111 223344566777 88888433 24567788999999999998875
No 256
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.94 E-value=16 Score=26.70 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=37.0
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v 95 (132)
+.-|+||+|=- .+-+|.|+.|-+.+.+.|+.+=-++.-. |...-.-+++.+++-++-+
T Consensus 99 ~~aDvIIIDEI-------GpMElks~~f~~~ve~vl~~~kpliatl-----Hrrsr~P~v~~ik~~~~v~ 156 (179)
T COG1618 99 EEADVIIIDEI-------GPMELKSKKFREAVEEVLKSGKPLIATL-----HRRSRHPLVQRIKKLGGVY 156 (179)
T ss_pred hcCCEEEEecc-------cchhhccHHHHHHHHHHhcCCCcEEEEE-----ecccCChHHHHhhhcCCEE
Confidence 45799999942 3447999999999999998776443211 1000112555666666643
No 257
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=52.89 E-value=88 Score=22.86 Aligned_cols=81 Identities=7% Similarity=-0.038 Sum_probs=44.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE-e--cCCCC----C---
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS-Q--AGTLW----Y--- 76 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~-~--~~~~~----~--- 76 (132)
++++++.+|+.+. - .+++||+|+....=.+ .. +. .-.++++.+.++++ +.+++ . ..++. .
T Consensus 88 ~~~~~~~~d~~~~--~-~~~sfD~V~~~~vL~h--l~-p~--~~~~~l~el~r~~~--~~v~i~e~~~~~~~~~~y~~~~ 157 (204)
T TIGR03587 88 PNINIIQGSLFDP--F-KDNFFDLVLTKGVLIH--IN-PD--NLPTAYRELYRCSN--RYILIAEYYNPSPVEISYRGNS 157 (204)
T ss_pred CCCcEEEeeccCC--C-CCCCEEEEEECChhhh--CC-HH--HHHHHHHHHHhhcC--cEEEEEEeeCCCceeeeeeCCc
Confidence 5678888887762 2 3578999997543221 11 11 22577888888874 33333 2 11111 1
Q ss_pred ChHHHHHHHHHHHhhCCCceE
Q psy4593 77 SLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 77 ~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.....+...+.+.+.||+-++
T Consensus 158 ~~~~~~d~~~~~~~~~~~l~~ 178 (204)
T TIGR03587 158 GRLWKRDFAGEMMDRYPDLKL 178 (204)
T ss_pred chhhhhhHHHHHHHhCCccee
Confidence 111224555666677886554
No 258
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=52.43 E-value=21 Score=28.71 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=31.1
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
-+.+|+||.-+--| -.|++.|.|.+..+. +|||.+++
T Consensus 242 ~~~~DivITTAlIP---GrpAP~Lvt~~mv~s----MkpGSViV 278 (356)
T COG3288 242 AKEVDIVITTALIP---GRPAPKLVTAEMVAS----MKPGSVIV 278 (356)
T ss_pred hcCCCEEEEecccC---CCCCchhhHHHHHHh----cCCCcEEE
Confidence 46899999988888 578889999887765 78999987
No 259
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=50.66 E-value=38 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=33.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC---CCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR---PGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p~Gil~~ 69 (132)
.++++..+|..+.-.....++||+|+.+.+=. ......--..++|+.+-+.|+ +|+-+++
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg---~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 283 ELITFEVKDVADLKNPLPKGPTGLVISNPPYG---ERLGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred cceEEEeCChhhcccccccCCCCEEEECCCCc---CccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 46888999998863331235799999997422 111111112455555444444 6655544
No 260
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=50.58 E-value=56 Score=23.74 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=33.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++..+.+|.... .++||+|+. ++... . +... -...++.+++.+++++++...
T Consensus 104 ~~i~~~~~d~~~~-----~~~fD~ii~~~~l~~---~-~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 104 GNVEFEVNDLLSL-----CGEFDIVVCMDVLIH---Y-PASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CceEEEECChhhC-----CCCcCEEEEhhHHHh---C-CHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 3678888886542 267999985 54321 1 1111 255788888888877776653
No 261
>KOG0259|consensus
Probab=50.09 E-value=29 Score=28.76 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=39.6
Q ss_pred cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
|+.+.+.. ++..-+||....+| .+..||.+.++.+.+.-+.-|++++-
T Consensus 190 ~~veal~D--ENT~AivviNP~NP------cGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 190 DGVEALAD--ENTVAIVVINPNNP------CGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred HHHHHhhc--cCeeEEEEeCCCCC------CcccccHHHHHHHHHHHHHhCCeEEe
Confidence 67777766 57888888886555 66899999999999999999999874
No 262
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=49.71 E-value=14 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=31.8
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-----C-----------CCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-----C-----------PAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-----~-----------~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++..+|...--......+||+|+...+=.. . . ++..-..--|++.+.+.|+++|.+++
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGS--KEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTC--ES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccc--cccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 4577888654433212478999998864210 1 0 00011123588999999999997653
No 263
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=49.32 E-value=49 Score=26.98 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=48.7
Q ss_pred EEEEcCCCCCCCCCCCcccccHHHHHHHHHhc-CCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCC
Q psy4593 30 LVVSGAAGPGRVVCPAESLFQASYFELMSRAL-RPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSG 108 (132)
Q Consensus 30 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L-~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~ 108 (132)
+...+...-....+....| .+-.+.+.+.. +|..|+++.++.+-.-.+-+..+++.+++.++++.+.....|.|.+.
T Consensus 57 ~~~T~l~E~d~VfGg~~~L--~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~tpgf~g~ 134 (415)
T cd01977 57 IWSTDMKESHVVFGGEKKL--KKNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCNAPGFAGP 134 (415)
T ss_pred eeeccCCccceeeccHHHH--HHHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEeCCCcCCc
Confidence 3445555443223444444 45556666666 57788888765544433457888888988888666767788888653
No 264
>PRK10708 hypothetical protein; Provisional
Probab=48.52 E-value=23 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.6
Q ss_pred hhCCCceEeEEeccCcCCCceeE
Q psy4593 90 SVFPRVAYGATCVPTYPSGQIGF 112 (132)
Q Consensus 90 ~vF~~v~~~~~~~p~~~~~~~~f 112 (132)
+-|.+-..|....|.||.|.|=|
T Consensus 25 E~F~EG~MyLvaL~dYP~GiWFF 47 (62)
T PRK10708 25 EEFSEGTMYLVSLEDYPLGIWFF 47 (62)
T ss_pred eeccCcEEEEEEcCcCCCceEEE
Confidence 34777788999999999998844
No 265
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=48.40 E-value=38 Score=26.71 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++.+.+.|+|||.+++=
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi 235 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI 235 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE
Confidence 35678888999999999873
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=47.54 E-value=39 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++.+.+.|+|||.+++=
T Consensus 220 ~~~L~~~~~~L~~gGrl~VI 239 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSII 239 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEE
Confidence 45678899999999999973
No 267
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=47.14 E-value=18 Score=29.42 Aligned_cols=76 Identities=17% Similarity=0.066 Sum_probs=46.3
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC--cEEEEecCCCCC-ChHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG--GIVCSQAGTLWY-SLDC 80 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--Gil~~~~~~~~~-~~~~ 80 (132)
.++++|+.+.+|+.+|... .+.+|+|++|.... | ..-++.+.+-|..| .-.+.|.--|.. .-+.
T Consensus 249 ~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve~------P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~ 315 (357)
T PRK11760 249 MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVEK------P-----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEE 315 (357)
T ss_pred hCCCCEEEEeccCcccCCC--CCCCCEEEEecccC------H-----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHH
Confidence 5789999999999999653 56899999998643 2 23356666666443 123333211211 2334
Q ss_pred HHHHHHHHHhhC
Q psy4593 81 VGNTLQHCASVF 92 (132)
Q Consensus 81 ~~~~~~~l~~vF 92 (132)
.+..++.+.+.+
T Consensus 316 v~~~l~~i~~~l 327 (357)
T PRK11760 316 VRQCLELIEEQL 327 (357)
T ss_pred HHHHHHHHHHHH
Confidence 555555565544
No 268
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=47.13 E-value=65 Score=22.26 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=28.1
Q ss_pred CcEE--EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 8 PVLS--ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 8 rv~v--~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++ ...++.+.++......+|+|++|...|. .-..++.+.+++.
T Consensus 24 ~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~--------~~g~~~~~~l~~~ 70 (204)
T PRK09958 24 DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPG--------VNGIQVLETLRKR 70 (204)
T ss_pred CCEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCC--------CCHHHHHHHHHhh
Confidence 3444 3567776665433467999999987652 1235677777653
No 269
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=47.08 E-value=11 Score=26.42 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCcEEEEccHHHHhcCCCC-CeecEEEEcCC-CCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVK-NMCGLVVSGAA-GPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~-~~yDvIi~D~~-dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.|++++.+.=.. +.+.-+ .+.|++|..+- =|...- -....-.|..-++.+.+.|+|||++++=
T Consensus 26 ~~v~li~~sHe~-l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 26 DRVTLILDSHEN-LDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIV 91 (140)
T ss_dssp SGEEEEES-GGG-GGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcEEEEECCHHH-HHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEE
Confidence 367777744333 333223 48999997753 242100 1223445778899999999999999863
No 270
>PRK05785 hypothetical protein; Provisional
Probab=46.30 E-value=56 Score=24.27 Aligned_cols=46 Identities=11% Similarity=-0.040 Sum_probs=29.4
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
.+.+|+.+ +.- .+++||+|++-..=. ..+ --...++.++++|+|.+
T Consensus 96 ~~~~d~~~-lp~-~d~sfD~v~~~~~l~----~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 96 KVVGSFEA-LPF-RDKSFDVVMSSFALH----ASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred eEEechhh-CCC-CCCCEEEEEecChhh----ccC---CHHHHHHHHHHHhcCce
Confidence 45677655 222 568999999743211 111 12678999999999964
No 271
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=45.98 E-value=1.1e+02 Score=22.50 Aligned_cols=53 Identities=6% Similarity=-0.090 Sum_probs=32.6
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.++++......+|++++|..|+. -|. .-..++.+.+++.-.+=.++++
T Consensus 22 ~~~~~~~~l~~~~~~~pd~vl~dl~d~~---mp~--~~Gl~~~~~l~~~~p~~~iIvl 74 (207)
T PRK11475 22 TFSSQSSFQDAMSRISFSAVIFSLSAMR---SER--REGLSCLTELAIKFPRMRRLVI 74 (207)
T ss_pred EeCCHHHHHHHhccCCCCEEEeeccccC---CCC--CCHHHHHHHHHHHCCCCCEEEE
Confidence 4567888887744557899998877752 111 2245677777765444445554
No 272
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=45.68 E-value=11 Score=30.14 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=25.9
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+||+|-+=..=. .+-...---+.|++.+.++|+|||+++.-
T Consensus 144 ~~FDvVScQFalH---Y~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 144 RKFDVVSCQFALH---YAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp S-EEEEEEES-GG---GGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcceeehHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5788887532111 01111222366999999999999999864
No 273
>KOG0257|consensus
Probab=45.64 E-value=38 Score=28.08 Aligned_cols=46 Identities=11% Similarity=0.291 Sum_probs=37.3
Q ss_pred hcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 20 MSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 20 l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++..-.++-++||+.. | -.|.+.+|++|=++.+.+..+..|++++-
T Consensus 165 le~~~t~kTk~Ii~nt--P---hNPtGkvfsReeLe~ia~l~~k~~~lvis 210 (420)
T KOG0257|consen 165 LESKITEKTKAIILNT--P---HNPTGKVFSREELERIAELCKKHGLLVIS 210 (420)
T ss_pred HHhhccCCccEEEEeC--C---CCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 4443457899999876 4 35678999999999999999999999873
No 274
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=44.79 E-value=56 Score=24.51 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=28.2
Q ss_pred CCcEE-EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 7 YPVLS-ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 7 ~rv~v-~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
+..++ ...||.+.++..... ||+|++|+--| .+-..+..+.+++.
T Consensus 23 ~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP--------~~dG~~~~~~iR~~ 68 (229)
T COG0745 23 EGYEVDVAADGEEALEAAREQ-PDLVLLDLMLP--------DLDGLELCRRLRAK 68 (229)
T ss_pred CCCEEEEECCHHHHHHHHhcC-CCEEEEECCCC--------CCCHHHHHHHHHhh
Confidence 44433 345566666553335 99999998666 23346677777765
No 275
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.72 E-value=84 Score=20.24 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=39.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGA 99 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~ 99 (132)
..||+.++|+..+ . .++.+.+++. +|+-+.+.-. ...+.....++.+.+++..|++.+..
T Consensus 27 ~G~~v~~~d~~~~---~--------~~l~~~~~~~-~pd~V~iS~~--~~~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 27 AGHEVDILDANVP---P--------EELVEALRAE-RPDVVGISVS--MTPNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp TTBEEEEEESSB----H--------HHHHHHHHHT-TCSEEEEEES--SSTHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred CCCeEEEECCCCC---H--------HHHHHHHhcC-CCcEEEEEcc--CcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 4789999998644 1 5555655554 8888766421 11233456888888999999877643
No 276
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=44.61 E-value=41 Score=25.48 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=9.6
Q ss_pred CeecEEEEcCC
Q psy4593 26 NMCGLVVSGAA 36 (132)
Q Consensus 26 ~~yDvIi~D~~ 36 (132)
.+||+||+|+.
T Consensus 123 ~~yD~VVvDtp 133 (254)
T cd00550 123 AEYDVVVFDTA 133 (254)
T ss_pred CCCCEEEECCC
Confidence 48999999985
No 277
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=44.48 E-value=43 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEecC-CCCCChHHHHHHHHHHHhhCCCc
Q psy4593 47 SLFQASYFELMSRALRPGGIVCSQAG-TLWYSLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 47 ~L~t~eF~~~~~~~L~p~Gil~~~~~-~~~~~~~~~~~~~~~l~~vF~~v 95 (132)
-.+|.+=.+.+++-|..||.+..-.. +. ....-..+.+.++++||..
T Consensus 65 ~~~s~~e~~~Lr~Yl~~GGfl~~D~~~~~--~~~~~~~~r~~~~~v~p~~ 112 (207)
T PF13709_consen 65 FPLSDEEIANLRRYLENGGFLLFDDRDCG--SAGFDASFRRLMKRVFPEP 112 (207)
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEECCCcc--cccccHHHHHHHHHhcCCC
Confidence 47789999999999999999998643 21 1223455677888899843
No 278
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=44.46 E-value=1.3e+02 Score=22.53 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
+.=++++++.+-+=++-.+ ... ||+|..=+..+ -....+-|...|++||.++..-+.. ..+.+..
T Consensus 114 L~L~nv~i~~~RaE~~~~~-~~~-~D~vtsRAva~-----------L~~l~e~~~pllk~~g~~~~~k~~~--~~~e~~e 178 (215)
T COG0357 114 LGLENVEIVHGRAEEFGQE-KKQ-YDVVTSRAVAS-----------LNVLLELCLPLLKVGGGFLAYKGLA--GKDELPE 178 (215)
T ss_pred hCCCCeEEehhhHhhcccc-ccc-CcEEEeehccc-----------hHHHHHHHHHhcccCCcchhhhHHh--hhhhHHH
Confidence 3446788888887776443 222 99999877654 1566888999999999887543221 1233444
Q ss_pred HHHHHHhh-CCCceEeEEeccCc
Q psy4593 84 TLQHCASV-FPRVAYGATCVPTY 105 (132)
Q Consensus 84 ~~~~l~~v-F~~v~~~~~~~p~~ 105 (132)
.-+.+... |.-...+....|.-
T Consensus 179 ~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 179 AEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred HHHHHHhhcCcEEEEEEeecCCC
Confidence 44455444 33334444556654
No 279
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=44.25 E-value=19 Score=26.66 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=34.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..+.|+.+|.-+-|..-.+++||.||+--+=. .-....+-++.+.|+ ...+|++.
T Consensus 55 rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ-------~~~~P~~vL~EmlRV-gr~~IVsF 109 (193)
T PF07021_consen 55 RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ-------AVRRPDEVLEEMLRV-GRRAIVSF 109 (193)
T ss_pred cCCCEEECCHHHhHhhCCCCCccEEehHhHHH-------hHhHHHHHHHHHHHh-cCeEEEEe
Confidence 35779999999988876789999999753311 112234445666544 34556654
No 280
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=44.20 E-value=28 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCeecEEEEcCCC-CCCCC---CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 25 KNMCGLVVSGAAG-PGRVV---CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 25 ~~~yDvIi~D~~d-p~~~~---~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+||++++=.++ ||..+ +.+..--..+|.+.|.+.|...++=.+-
T Consensus 112 ~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~ 161 (187)
T COG3172 112 EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVV 161 (187)
T ss_pred hcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEE
Confidence 4689999975444 55322 3444445689999999999999874443
No 281
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=44.12 E-value=61 Score=27.43 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=36.6
Q ss_pred CCCcEEEE--ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSAR--QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~--~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++++- .+|.+-++-..+.+.|+||.|..-|. +...+-.+.+++ ..|+.-+++
T Consensus 25 ~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~--------mdGLdLI~~ike-~~p~~~~II 81 (475)
T COG4753 25 ALGIEVVGTAANGKEALELIQETQPDIVITDINMPG--------MDGLDLIKAIKE-QSPDTEFII 81 (475)
T ss_pred hcCCeEEEecccHHHHHHHHHhcCCCEEEEecCCCC--------CcHHHHHHHHHH-hCCCceEEE
Confidence 34555554 46666665545678999999999883 445667777777 556665543
No 282
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=44.04 E-value=76 Score=23.91 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=27.2
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
.++||+||+|+.-. +...+....+ ...++=++++..+. .........++.+++
T Consensus 210 ~~~yD~ViiD~pp~---------~~~~d~~~~~--~~~d~vilV~~~~~--t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 210 MGDYDVVIVDTPSA---------EHSSDAQIVA--TRARGTLIVSRVNE--TRLHELTSLKEHLSG 262 (274)
T ss_pred HhcCCEEEEeCCCc---------ccccHHHHHH--HhCCeEEEEEECCC--CCHHHHHHHHHHHHh
Confidence 46899999998521 1122222222 23333344444322 233456667777765
No 283
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=43.95 E-value=65 Score=19.89 Aligned_cols=54 Identities=20% Similarity=0.098 Sum_probs=33.6
Q ss_pred cEEEEccHHHH-hcCCCC-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 9 VLSARQDCTDF-MSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 9 v~v~~~Dg~~~-l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+.....|.... +.- .. ..||++....... ... ....+..+.+.|+|+|.+....
T Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~----~~~----~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 100 VDFVVADALGGVLPF-EDSASFDLVISLLVLH----LLP----PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred eEEEEeccccCCCCC-CCCCceeEEeeeeehh----cCC----HHHHHHHHHHhcCCCcEEEEEe
Confidence 46666676652 322 22 4788883322211 011 5788999999999999988653
No 284
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=43.23 E-value=80 Score=24.21 Aligned_cols=67 Identities=7% Similarity=0.056 Sum_probs=34.5
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.+-.+++.+.....||+||+|+.-. . -+--..+.+.+..+-++|+.-+ .......++.++.+++.--
T Consensus 153 ~~~~qll~~~~~~~~D~vIID~PP~---~--------g~~d~~i~~~~~~g~viVt~p~--~~~~~~v~ka~~~~~~~~~ 219 (265)
T COG0489 153 KAMLQLLEDVLWGEYDYVIIDTPPG---T--------GDADATVLQRIPDGVVIVTTPG--KTALEDVKKAIDMLEKAGI 219 (265)
T ss_pred HHHHHHHHHHhccCCCEEEEeCCCC---c--------hHHHHHHHhccCCeEEEEeCCc--cchHHHHHHHHHHHHhcCC
Confidence 3445566662233499999998622 1 1112234444555444554211 1234456667777776653
No 285
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.97 E-value=57 Score=24.94 Aligned_cols=42 Identities=2% Similarity=-0.010 Sum_probs=26.7
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+.||||+|+.++. ..-+..--=.+|+..+++.-..|=+++.
T Consensus 122 ~~~dViIIDSls~~--~~~~~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 122 WEKDVIIIDSLSAF--ATYDSEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred hcCCEEEEecccHH--hhcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 57999999999883 2222122235788888865555555544
No 286
>PRK06202 hypothetical protein; Provisional
Probab=42.95 E-value=47 Score=24.46 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=31.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++..|+-. +.. .+++||+|++-..=.+ .+... -.++++.+++.++ |.++++
T Consensus 110 ~~~~~~~~~~~~~-l~~-~~~~fD~V~~~~~lhh---~~d~~--~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 110 RPGVTFRQAVSDE-LVA-EGERFDVVTSNHFLHH---LDDAE--VVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred cCCCeEEEEeccc-ccc-cCCCccEEEECCeeec---CChHH--HHHHHHHHHHhcC--eeEEEe
Confidence 3456666665543 222 4578999997532110 11111 2579999999998 444444
No 287
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=42.65 E-value=1.1e+02 Score=21.72 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=28.4
Q ss_pred CcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCcee
Q psy4593 64 GGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIG 111 (132)
Q Consensus 64 ~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~ 111 (132)
++++++.+..|+...+.+..+++.+++. . ..-+|.+.||.+.
T Consensus 92 ~~vlv~~~D~P~l~~~~i~~l~~~~~~~--~----~vi~p~~~GG~p~ 133 (195)
T TIGR03552 92 GAVLILMADLPLLTPRELKRLLAAATEG--D----VVIAPDRGGGTNA 133 (195)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcccC--C----EEEEecCCCCeeE
Confidence 3788899999988887777777766421 1 2347778665443
No 288
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.55 E-value=1.4e+02 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.031 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCCC--CCChHHHHHHHHHHHhhCCCceE
Q psy4593 49 FQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 49 ~t~eF~~~~~~~L~p~Gil~~~~~~~--~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.+.+|+..+.+.+..-|+-.+..... ...+..+..+++.+++.+|.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i 196 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKL 196 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeE
Confidence 57888888888887778755542221 13567789999999999986543
No 289
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=41.27 E-value=90 Score=21.49 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=28.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.+.......+|+|++|..-|. .-..++.+.+++....-.++++
T Consensus 35 ~~~~~~~~~~~~~~~~dlvild~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 83 (210)
T PRK09935 35 TDDYRITIDYLRTRPVDLIIMDIDLPG--------TDGFTFLKRIKQIQSTVKVLFL 83 (210)
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHHhCCCCcEEEE
Confidence 456555544323467999999986551 1235666666654333344444
No 290
>KOG2356|consensus
Probab=39.10 E-value=29 Score=27.78 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred CCcEEEEccH---HHHhcCCCCCeecEEEEcCCCCCCCCCCCc----ccccHH-HHHH--HHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDC---TDFMSGPVKNMCGLVVSGAAGPGRVVCPAE----SLFQAS-YFEL--MSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg---~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~----~L~t~e-F~~~--~~~~L~p~Gil~~~~~~ 73 (132)
||-..+.+|. ..++.. .+..+|+||+|. ||.+-.... ...+.. .... +...+.|.|++++|+.+
T Consensus 162 pkSsF~~gDv~~~~qll~~-H~llpdlIIiDP--PW~NKSVkRs~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTN 235 (366)
T KOG2356|consen 162 PKSSFHVGDVKDIEQLLRA-HDLLPDLIIIDP--PWFNKSVKRSRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTN 235 (366)
T ss_pred CccceecccHHHHHHHhHH-HhhcCCeEEeCC--CCCCcccccccceecccchhhhhcCCchhhcCCCceEEEEEcC
Confidence 4556666553 333322 455679999998 443222111 112222 1111 34568899999999755
No 291
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=38.31 E-value=75 Score=23.80 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=29.5
Q ss_pred CCcEEEEccHH-----HHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCT-----DFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~-----~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+|++++.+|.. .-++.. ...+..+||.|+..-. ... ..-++.....+++|+.+++
T Consensus 85 ~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~-----~hv---l~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 85 PRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH-----EHV---LAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS---------SSH---HHHHHHHHHT--TT-EEEE
T ss_pred CceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH-----HHH---HHHHHHhCccCCCCCEEEE
Confidence 89999999854 223331 2345669999987431 112 2335557889999999986
No 292
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=37.98 E-value=61 Score=24.60 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCeecEEEEcCCCCCCCCCCC--cccccHHHHHHHHH
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPA--ESLFQASYFELMSR 59 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~--~~L~t~eF~~~~~~ 59 (132)
+.++|||++|.+.+.....|. ...||..-+...++
T Consensus 136 e~~WDvImVDgP~Gy~~eaPGRM~aIyTAav~AR~r~ 172 (225)
T TIGR01627 136 NTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGS 172 (225)
T ss_pred cccCcEEEEeCCCCCCCCCCcchhhHHHHHHHHHhcc
Confidence 458999999998653112221 25666555554443
No 293
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=37.73 E-value=62 Score=23.40 Aligned_cols=51 Identities=16% Similarity=0.052 Sum_probs=28.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
.+++.+.+| +.. ..+.||+|+.- +... . +... ....++.+.+.+++++++.
T Consensus 112 ~~i~~~~~d----~~~-~~~~fD~v~~~~~l~~---~-~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 112 GNITFEVGD----LES-LLGRFDTVVCLDVLIH---Y-PQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCcEEEEcC----chh-ccCCcCEEEEcchhhc---C-CHHH--HHHHHHHHHhhcCCeEEEE
Confidence 467888888 223 34679999863 3211 0 1111 2456677777665555444
No 294
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=37.51 E-value=39 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy4593 51 ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~ 69 (132)
..+++.+.+.|+|||.+++
T Consensus 221 ~~~L~~a~~~L~~gGrl~V 239 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVV 239 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEE
Confidence 4567889999999999997
No 295
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=36.72 E-value=87 Score=23.03 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=35.0
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
..+||++|.- +-|-.-...+.+.|+..|.=.+...+.... ..-++++.+.||.+.+|...+
T Consensus 122 ~~~VllvDd~-----------laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~----~~gl~~l~~~~p~v~i~~~~i 182 (207)
T TIGR01091 122 ERTVIVLDPM-----------LATGGTMIAALDLLKKRGAKKIKVLSIVAA----PEGIEAVEKAHPDVDIYTAAI 182 (207)
T ss_pred CCEEEEECCC-----------ccchHHHHHHHHHHHHcCCCEEEEEEEecC----HHHHHHHHHHCCCCEEEEEEE
Confidence 3468888842 223333555566666666422222122111 345678889999999988765
No 296
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=36.62 E-value=1.2e+02 Score=25.18 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=42.0
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.+.|++++|=.+- .. ...-...+||..+......+..+++-+ ...+..+..+..+|++.|.....+....|++
T Consensus 201 ~~~dvLiIDDiq~---l~-~k~~~qeelf~l~N~l~~~~k~IIlts---~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 201 RNVDALFIEDIEV---FS-GKGATQEEFFHTFNSLHTEGKLIVISS---TCAPQDLKAMEERLISRFEWGIAIPLHPLTK 273 (445)
T ss_pred ccCCEEEEcchhh---hc-CChhhHHHHHHHHHHHHHCCCcEEEec---CCCHHHHhhhHHHHHhhhcCCeEEecCCCCH
Confidence 4689999993322 11 112235677776665555555555432 2234456677889998887555445445543
No 297
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=36.48 E-value=46 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhhCCCceEeEEeccCcCC
Q psy4593 77 SLDCVGNTLQHCASVFPRVAYGATCVPTYPS 107 (132)
Q Consensus 77 ~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~ 107 (132)
.-+.+.++.++|++.||... +|.+|+
T Consensus 32 s~eeF~eLH~~L~~~FP~~~-----LP~fP~ 57 (101)
T cd06896 32 SFEQFSELHSQLQKQFPSLA-----LPEFPH 57 (101)
T ss_pred cHHHHHHHHHHHHHHCcccc-----ccCCCC
Confidence 34678999999999999544 799987
No 298
>PRK09483 response regulator; Provisional
Probab=36.44 E-value=1.2e+02 Score=21.19 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=26.5
Q ss_pred CCcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 7 YPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 7 ~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
+..+++ ..++.+.+.......+|+|++|..-|. .-..++.+.+++.
T Consensus 25 ~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~--------~~g~~~~~~l~~~ 72 (217)
T PRK09483 25 KGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPG--------IGGLEATRKILRY 72 (217)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHHH
Confidence 345553 456655544323467999999987552 1134566666543
No 299
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=36.40 E-value=1.6e+02 Score=23.36 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.+++....|..+ .+++||+|++ |..-. .+..- -.++++.++ .+.++|+++...... ....++
T Consensus 197 ~~~~f~~~Dl~~-----l~~~fD~Vv~~~vL~H-----~p~~~-~~~ll~~l~-~l~~g~liIs~~p~~-----~~~~~l 259 (315)
T PLN02585 197 VLPKFEANDLES-----LSGKYDTVTCLDVLIH-----YPQDK-ADGMIAHLA-SLAEKRLIISFAPKT-----LYYDIL 259 (315)
T ss_pred cceEEEEcchhh-----cCCCcCEEEEcCEEEe-----cCHHH-HHHHHHHHH-hhcCCEEEEEeCCcc-----hHHHHH
Confidence 456677777533 2467999984 44211 11111 135666666 467888877543221 233444
Q ss_pred HHHHhhCC
Q psy4593 86 QHCASVFP 93 (132)
Q Consensus 86 ~~l~~vF~ 93 (132)
+.+.+.|+
T Consensus 260 ~~~g~~~~ 267 (315)
T PLN02585 260 KRIGELFP 267 (315)
T ss_pred HHHHhhcC
Confidence 55555554
No 300
>KOG1136|consensus
Probab=36.30 E-value=59 Score=26.69 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 16 CTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 16 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
|.+|+.. -+.|+.|..++-.. ...-+...-.+||++.++++...||-+.+..
T Consensus 188 GaA~id~---~rpdlLIsESTYat-tiRdskr~rERdFLk~VhecVa~GGkvlIPv 239 (501)
T KOG1136|consen 188 GAAWIDK---CRPDLLISESTYAT-TIRDSKRCRERDFLKKVHECVARGGKVLIPV 239 (501)
T ss_pred chhhhcc---ccCceEEeecccee-eeccccchhHHHHHHHHHHHHhcCCeEEEEe
Confidence 4445544 46788888766431 1234456668999999999999999988753
No 301
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=35.15 E-value=21 Score=32.10 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=20.4
Q ss_pred CcEEEEccHHHHhcCC-CC----CeecEEEEcCC
Q psy4593 8 PVLSARQDCTDFMSGP-VK----NMCGLVVSGAA 36 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~-~~----~~yDvIi~D~~ 36 (132)
+++...+|+.++.... .. ++||+|+.|..
T Consensus 465 ~~q~~l~d~t~~~l~~~~~~l~~ekfd~IVtDPP 498 (875)
T COG1743 465 SVQVTLDDATEKVLSGSAGSLNLEKFDVIVTDPP 498 (875)
T ss_pred chhHhhhhhhhhcccccccccccccCceeecCCC
Confidence 5677777877554332 23 78999999976
No 302
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=34.82 E-value=1.8e+02 Score=21.26 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=38.9
Q ss_pred CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC-CCCCCccc---ccHHHHHHHHHh------cCCCcEEEEec
Q psy4593 2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-VVCPAESL---FQASYFELMSRA------LRPGGIVCSQA 71 (132)
Q Consensus 2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~-~~~~~~~L---~t~eF~~~~~~~------L~p~Gil~~~~ 71 (132)
+.+.+.+++++.+|-. - +..+-|+|+.-+...-. +-+.+..+ -.++..+.|++. |..|+++++.+
T Consensus 13 ~~~~~~~i~i~~gDI~----~-t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a 87 (186)
T cd02904 13 SLFLGQKLSLVQSDIS----I-GSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQA 87 (186)
T ss_pred hhcCCCEEEEEECCcc----c-cceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccC
Confidence 4577889999999942 1 33579999975553210 01222222 236677777644 67788776554
Q ss_pred C
Q psy4593 72 G 72 (132)
Q Consensus 72 ~ 72 (132)
+
T Consensus 88 ~ 88 (186)
T cd02904 88 H 88 (186)
T ss_pred C
Confidence 3
No 303
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=34.76 E-value=1e+02 Score=25.73 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHhcC--CCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 56 LMSRALR--PGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 56 ~~~~~L~--p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.+.|+|+ |.| =.+|++....+.+..+.+.+.++++||+-.+.....|+|
T Consensus 273 aI~r~lA~Apya-Dl~W~ET~~Pdle~ak~Fae~Ih~~~P~~~LaYN~SPSF 323 (433)
T COG2224 273 AIARGLAYAPYA-DLLWCETSTPDLEEARQFAEAIHAKYPGKLLAYNCSPSF 323 (433)
T ss_pred HHHHHHhcCccc-ceEEEecCCCCHHHHHHHHHHHHHhCCcceeeecCCCCc
Confidence 3445554 666 345765555577889999999999999999888888988
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=34.68 E-value=1.8e+02 Score=22.09 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC---CCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR---PGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.+.+.++|.+.- ...........+..+.+++.|+ ++.++.++-.+.......-..+++.+++.|+
T Consensus 78 g~~i~vIDTPGl--~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG 145 (249)
T cd01853 78 GFKLNIIDTPGL--LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG 145 (249)
T ss_pred CeEEEEEECCCc--CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 467888998431 1111112244556666777774 5566666533322322334567777777776
No 305
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=34.11 E-value=1.2e+02 Score=21.55 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=26.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++......||+||+|..-|. .-..++.+.+++.-..-.++++
T Consensus 35 ~~~~~~~~~~~~~~~~dlvild~~l~~--------~~g~~~~~~lr~~~~~~pii~l 83 (239)
T PRK09468 35 AANAEQMDRLLTRESFHLMVLDLMLPG--------EDGLSICRRLRSQNNPTPIIML 83 (239)
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 345555544323467999999986552 1224556665543322334444
No 306
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=33.79 E-value=2.1e+02 Score=22.18 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHhcCCCcEEEEecCCCC--CChHHHHHHHHHHHhhCCCce
Q psy4593 48 LFQASYFELMSRALRPGGIVCSQAGTLW--YSLDCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 48 L~t~eF~~~~~~~L~p~Gil~~~~~~~~--~~~~~~~~~~~~l~~vF~~v~ 96 (132)
-.+.+|+..+.+.+.+-|+-.++..... ..+.....+++.+++.++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 201 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER 201 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe
Confidence 3578999998888888888766632221 256678999999999998643
No 307
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=33.63 E-value=8.4 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.3
Q ss_pred CCCCCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCC
Q psy4593 2 RSYRGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAG 37 (132)
Q Consensus 2 ~~~~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~d 37 (132)
+.|-+.++++...||+.|.-.. .++.-.+|+.|+..
T Consensus 6 ~~~l~~~v~V~l~dgR~~~G~l~~~D~~~NivL~~~~E 43 (75)
T cd06168 6 RSLLGRTMRIHMTDGRTLVGVFLCTDRDCNIILGSAQE 43 (75)
T ss_pred HHhcCCeEEEEEcCCeEEEEEEEEEcCCCcEEecCcEE
Confidence 3466889999999999996553 56778888888864
No 308
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=33.63 E-value=1.1e+02 Score=26.78 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=33.2
Q ss_pred CeecEEEEcCCCCCCC-CCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 26 NMCGLVVSGAAGPGRV-VCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~-~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+.|++|++++-.... ..++..-...+|.+.+++.|+.||.+++.+
T Consensus 363 ~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 363 PRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred CCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4689999998743100 134444456789999999999999998865
No 309
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.60 E-value=80 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++..+.+.|+|||.+++=
T Consensus 224 ~~~L~~a~~~L~~gGRl~VI 243 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVI 243 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEE
Confidence 57889999999999999873
No 310
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=33.43 E-value=60 Score=29.33 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++|+.|+++|+++|++++.
T Consensus 568 ~~a~~~~rEll~ddg~lv~y 587 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTY 587 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEE
Confidence 56789999999999999986
No 311
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=33.26 E-value=1.4e+02 Score=23.23 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=22.8
Q ss_pred CCCcEEE--EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 6 GYPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 6 d~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
.+..+++ ..|+.+.++.....++|+|++|..-|
T Consensus 23 ~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~mp 57 (337)
T PRK12555 23 DPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMP 57 (337)
T ss_pred CCCCEEEEEECCHHHHHHHHhccCCCEEEEcCCCC
Confidence 4455554 46777776654456899999998765
No 312
>PRK10867 signal recognition particle protein; Provisional
Probab=33.19 E-value=67 Score=26.71 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=24.5
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..||+||+|..-. ......+. +-+..+++.++|++++.+
T Consensus 182 ~~~DvVIIDTaGr---l~~d~~lm--~eL~~i~~~v~p~evllV 220 (433)
T PRK10867 182 NGYDVVIVDTAGR---LHIDEELM--DELKAIKAAVNPDEILLV 220 (433)
T ss_pred cCCCEEEEeCCCC---cccCHHHH--HHHHHHHHhhCCCeEEEE
Confidence 5699999998532 11122332 335667778899997654
No 313
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=32.86 E-value=42 Score=23.89 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=23.9
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
..-|+|++| .-.+-+|.+..|.+.+.++|.++=
T Consensus 94 ~~~~liviD-------EIG~mEl~~~~F~~~v~~~l~s~~ 126 (168)
T PF03266_consen 94 SSSDLIVID-------EIGKMELKSPGFREAVEKLLDSNK 126 (168)
T ss_dssp HCCHEEEE----------STTCCC-CHHHHHHHHHHCTTS
T ss_pred CCCCEEEEe-------ccchhhhcCHHHHHHHHHHHcCCC
Confidence 467999999 334458889999999999999543
No 314
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=32.80 E-value=2e+02 Score=22.54 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=49.6
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC--CCCCChHHHHHHHHHHHhhCCCceEeEEecc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG--TLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~--~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p 103 (132)
.+.++|++- .| ..|.+..++.+-.+.+.+..++.|++++--+ ..+............+ ..++++-+..+...
T Consensus 140 ~~~~~v~~~--~P---~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK 213 (354)
T PRK06358 140 EEIDLVFLC--NP---NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL-ENFKNLIIIRAFTK 213 (354)
T ss_pred cCCCEEEEe--CC---CCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc-cCCCCEEEEEechh
Confidence 357887653 45 4667788999999999888888787665311 1111111111222222 34677766666555
Q ss_pred Cc--CCCceeEEEee
Q psy4593 104 TY--PSGQIGFVLGS 116 (132)
Q Consensus 104 ~~--~~~~~~f~~as 116 (132)
++ +|=..||++++
T Consensus 214 ~~gl~G~RiG~lv~~ 228 (354)
T PRK06358 214 FFAIPGLRLGYGLTS 228 (354)
T ss_pred hccCcchhheeeecC
Confidence 55 45467888775
No 315
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=32.28 E-value=86 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
..|+++..-.....-+ .-.++|++|--.--| -.-+..|.++|..+. ++||++++
T Consensus 212 ~~rv~~~~st~~~iee--~v~~aDlvIgaVLIp---gakaPkLvt~e~vk~----MkpGsViv 265 (371)
T COG0686 212 GGRVHTLYSTPSNIEE--AVKKADLVIGAVLIP---GAKAPKLVTREMVKQ----MKPGSVIV 265 (371)
T ss_pred CceeEEEEcCHHHHHH--HhhhccEEEEEEEec---CCCCceehhHHHHHh----cCCCcEEE
Confidence 3556666555555322 246899999877666 355668888887765 88999986
No 316
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.25 E-value=28 Score=24.22 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=28.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
++||+||+|+.-. .+.+.+. +.....-++++++-...+ ........+++.+++.
T Consensus 66 ~~yD~VIiD~pp~----------~~~~~~~-~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~~ 119 (169)
T cd02037 66 GELDYLVIDMPPG----------TGDEHLT-LAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKKV 119 (169)
T ss_pred CCCCEEEEeCCCC----------CcHHHHH-HHhccCCCeEEEEECCch-hhHHHHHHHHHHHHhc
Confidence 6899999998421 1233332 222234566666532111 2334556667777765
No 317
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=32.06 E-value=74 Score=20.24 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=26.7
Q ss_pred ccHH-HHhcCCCCC-eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 14 QDCT-DFMSGPVKN-MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 14 ~Dg~-~~l~~~~~~-~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
.||. +-+...... .+|+|++|..-|. +-..++.+.+++.
T Consensus 36 ~~g~~~al~~~~~~~~~dlii~D~~mp~--------~~G~~~~~~l~~~ 76 (130)
T COG0784 36 ADGEEEALELLRELPQPDLILLDINMPG--------MDGIELLRRLRAR 76 (130)
T ss_pred CChHHHHHHHHHhCCCCCEEEEeCCCCC--------CCHHHHHHHHHhC
Confidence 4673 666553334 5999999997762 2267888888876
No 318
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=32.04 E-value=35 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=20.2
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCC
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPG 39 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~ 39 (132)
|+.+||++..+= ...+|++++|..+|.
T Consensus 125 iilDDGfQh~~l--~rD~~IvlvD~~~~f 151 (311)
T TIGR00682 125 IILDDGLQHRKL--HRDVEIVVVDGQRPF 151 (311)
T ss_pred EEECCCCcCccc--cCCeEEEEECCCCCC
Confidence 455789887433 567999999998873
No 319
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.62 E-value=1.3e+02 Score=20.27 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=24.5
Q ss_pred cEEEEecCCCCC-ChHHHHHHHHHHHhhCCCceEeEEe
Q psy4593 65 GIVCSQAGTLWY-SLDCVGNTLQHCASVFPRVAYGATC 101 (132)
Q Consensus 65 Gil~~~~~~~~~-~~~~~~~~~~~l~~vF~~v~~~~~~ 101 (132)
|++++-.|+... ....+..+.+.+++.||+..+..+.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 677776555433 3346888888888889876654443
No 320
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=31.51 E-value=1.2e+02 Score=21.76 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=28.3
Q ss_pred HHHHhc-CCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 56 LMSRAL-RPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 56 ~~~~~L-~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
...+.+ +.+++++.++..|+...+.+..+++.+++.
T Consensus 83 ~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 83 NGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred HHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 333344 578899999999999999999999988763
No 321
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=31.31 E-value=12 Score=28.21 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccH---HHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQA---SYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~---eF~~~~~~~L~p~Gil~~~ 70 (132)
+.+++++.+||+.| + -+.-|+||+..-|- .|... .-+..+.+-|+.+|-++-|
T Consensus 79 ~~n~evv~gDA~~y--~--fe~ADvvicEmlDT--------aLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 79 DVNWEVVVGDARDY--D--FENADVVICEMLDT--------ALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred CcceEEEecccccc--c--ccccceeHHHHhhH--------HhhcccccHHHHHHHHHhhcCCccccH
Confidence 46789999999998 3 25689999876654 13333 3455666667788887643
No 322
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=31.21 E-value=2.1e+02 Score=20.95 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=34.6
Q ss_pred ecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc---EEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 28 CGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG---IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G---il~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
-+||++|.- +.|-.-...+.+.|+..| |.+.. ... ...-++++.+.||++.+|.+.+
T Consensus 125 ~~VllvDd~-----------laTG~Tl~~ai~~L~~~G~~~I~~~~---ll~----~~~gl~~l~~~~p~v~i~~~~i 184 (209)
T PRK00129 125 RTVIVVDPM-----------LATGGSAIAAIDLLKKRGAKNIKVLC---LVA----APEGIKALEEAHPDVEIYTAAI 184 (209)
T ss_pred CEEEEECCc-----------ccchHHHHHHHHHHHHcCCCEEEEEE---Eec----CHHHHHHHHHHCCCcEEEEEee
Confidence 468888732 223334556666666666 22222 111 1356678999999999988765
No 323
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=31.21 E-value=1.4e+02 Score=21.02 Aligned_cols=39 Identities=5% Similarity=0.003 Sum_probs=23.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..|+.+.++......||+|++|..-|. .-..++.+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~dlvild~~~~~--------~~g~~~~~~lr~ 68 (227)
T PRK09836 30 ADNGLNGYHLAMTGDYDLIILDIMLPD--------VNGWDIVRMLRS 68 (227)
T ss_pred ECCHHHHHHHHhhCCCCEEEEECCCCC--------CCHHHHHHHHHh
Confidence 455555554323467999999987652 223455555554
No 324
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=31.19 E-value=1.4e+02 Score=21.03 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=17.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..++.+.+.......||+|++|..-|
T Consensus 30 ~~~~~~~l~~~~~~~~dlvild~~l~ 55 (223)
T PRK10816 30 AEDAKEADYYLNEHLPDIAIVDLGLP 55 (223)
T ss_pred ECCHHHHHHHHhhCCCCEEEEECCCC
Confidence 45555555443346799999998766
No 325
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=30.72 E-value=1e+02 Score=26.95 Aligned_cols=73 Identities=5% Similarity=-0.042 Sum_probs=45.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.++|++++|=.+- .. ...-...+||..+..+...++-+++-+ ......+..+...|++.|..-..+....|.+
T Consensus 376 ~~~DLLlIDDIq~---l~-gke~tqeeLF~l~N~l~e~gk~IIITS---d~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 376 REMDILLVDDIQF---LE-DKESTQEEFFHTFNTLHNANKQIVLSS---DRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred hcCCEEEEehhcc---cc-CCHHHHHHHHHHHHHHHhcCCCEEEec---CCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 3589999985543 21 222335788887777666666555522 1233445667788888887766666666665
No 326
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.66 E-value=1.4e+02 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.3
Q ss_pred cEEEEecCCCCC--ChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 65 GIVCSQAGTLWY--SLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 65 Gil~~~~~~~~~--~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
||+++-.|+.+. ....+..+.+.+++.||+..++++.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT 41 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT 41 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch
Confidence 567766555444 23378999999999999999887754
No 327
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=30.28 E-value=1.3e+02 Score=21.46 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=28.6
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+|++|..-|. .. ..-..++.+.+++....-.++++
T Consensus 35 ~~~~~~~~~~~~~~~~DlvllD~~l~~---~~--~~~g~~~~~~l~~~~~~~~iIvl 86 (216)
T PRK10840 35 FEDSTALINNLPKLDAHVLITDLSMPG---DK--YGDGITLIKYIKRHFPSLSIIVL 86 (216)
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCcCCC---CC--CCCHHHHHHHHHHHCCCCcEEEE
Confidence 456666554423357999999986551 10 01135677777665333345443
No 328
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=29.87 E-value=2.6e+02 Score=21.97 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=43.6
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-CCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
+-++|++ ..| ..|.+..++.+-.+.+.+..+++++++.-- -..+............+.+..+++.+..+..-.|
T Consensus 159 ~~~~v~l--~~p---~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 233 (371)
T PRK05166 159 APRMLMF--SNP---SNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY 233 (371)
T ss_pred CCCEEEE--eCC---CCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh
Confidence 3466765 445 456677888988888887777655555421 1111111101122233333444554444444444
Q ss_pred --CCCceeEEEee
Q psy4593 106 --PSGQIGFVLGS 116 (132)
Q Consensus 106 --~~~~~~f~~as 116 (132)
+|=..||++++
T Consensus 234 ~l~GlRiG~~i~~ 246 (371)
T PRK05166 234 GLAGLRVGYGLVS 246 (371)
T ss_pred hcchhheeeeecC
Confidence 34357877764
No 329
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=29.63 E-value=48 Score=17.78 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.0
Q ss_pred HHHHHHHhhCCCce
Q psy4593 83 NTLQHCASVFPRVA 96 (132)
Q Consensus 83 ~~~~~l~~vF~~v~ 96 (132)
..+++|++.||++.
T Consensus 3 ~~v~~L~~mFP~~~ 16 (42)
T PF02845_consen 3 EMVQQLQEMFPDLD 16 (42)
T ss_dssp HHHHHHHHHSSSS-
T ss_pred HHHHHHHHHCCCCC
Confidence 56789999999875
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.56 E-value=91 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.||+||+|..-- ......+ -+=+..+++.++|++++.+
T Consensus 181 ~~~DvVIIDTaGr---~~~d~~l--~~eL~~i~~~~~p~e~lLV 219 (428)
T TIGR00959 181 NGFDVVIVDTAGR---LQIDEEL--MEELAAIKEILNPDEILLV 219 (428)
T ss_pred cCCCEEEEeCCCc---cccCHHH--HHHHHHHHHhhCCceEEEE
Confidence 5699999998532 1111122 2334566778889997654
No 331
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=29.55 E-value=1.4e+02 Score=24.63 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc-----ccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE-----SLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~-----~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..++...+|+..+ +. .-+.+|+||++.+=. ..... .|| ++|-+.+++.++--+.++.-
T Consensus 281 d~I~f~~~d~~~l-~~-~~~~~gvvI~NPPYG---eRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 281 DLIEFKQADATDL-KE-PLEEYGVVISNPPYG---ERLGSEALVAKLY-REFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred ceEEEEEcchhhC-CC-CCCcCCEEEeCCCcc---hhcCChhhHHHHH-HHHHHHHHHHhcCCceEEEE
Confidence 3466777787764 33 117899999997533 22221 244 47778888888877777653
No 332
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=29.48 E-value=1.8e+02 Score=19.55 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHHHhc-CCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCce
Q psy4593 54 FELMSRAL-RPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 54 ~~~~~~~L-~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~ 96 (132)
+....+.+ ..++++++.+..|+.+.+.+..+++.+++.-..+.
T Consensus 76 l~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~ 119 (160)
T PF12804_consen 76 LLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIV 119 (160)
T ss_dssp HHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEE
Confidence 45555557 88999999998898888889988888876544443
No 333
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=29.38 E-value=1.2e+02 Score=18.53 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 52 SYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 52 eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.|++.+++.+......++ . +.-..+.+.++++||++..
T Consensus 44 ~~l~~~~~~~~~~p~~ii----~----D~~~~~~~Ai~~vfP~~~~ 81 (93)
T PF10551_consen 44 WFLEKLKEAMPQKPKVII----S----DFDKALINAIKEVFPDARH 81 (93)
T ss_pred HHHHHhhhccccCceeee----c----cccHHHHHHHHHHCCCceE
Confidence 566777777754322222 1 1235788999999998765
No 334
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=29.31 E-value=70 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhcCCCcEEEEecC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
..+.+......|+|||+++.|+.
T Consensus 75 d~~~~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 75 EPAEVARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CHHHHHHHHhhcCCCcEEEEECC
Confidence 44445666778999999999963
No 335
>PRK11173 two-component response regulator; Provisional
Probab=29.30 E-value=1.5e+02 Score=21.22 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=25.5
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.|+.+.+.......||+|++|..-|. .-..++.+.+++. ..-.++++
T Consensus 34 ~~~~~~~~~~~~~~~dlvild~~l~~--------~~g~~~~~~lr~~-~~~pii~l 80 (237)
T PRK11173 34 TDGAEMHQILSENDINLVIMDINLPG--------KNGLLLARELREQ-ANVALMFL 80 (237)
T ss_pred CCHHHHHHHHhhCCCCEEEEcCCCCC--------CCHHHHHHHHhcC-CCCCEEEE
Confidence 45555443323457999999986552 1234555655542 23344444
No 336
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=29.20 E-value=1.6e+02 Score=21.04 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=27.1
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.+.+.......+|+|++|..-|. .-..++.+.+++. .+.-++++
T Consensus 32 ~~~~~~l~~~~~~~~dlvild~~l~~--------~~g~~~~~~ir~~-~~~pii~l 78 (240)
T PRK10701 32 PRGDRAEATILREQPDLVLLDIMLPG--------KDGMTICRDLRPK-WQGPIVLL 78 (240)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCC--------CCHHHHHHHHHhc-CCCCEEEE
Confidence 45555544423467999999987662 2235666666653 33344443
No 337
>KOG3201|consensus
Probab=29.02 E-value=1.3e+02 Score=22.23 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 25 KNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 25 ~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
..+||+|+. |+. -..-+-....+.++..|+|.|--.+- +|.+ ...+....+.+..+
T Consensus 101 q~tFDiIlaADCl--------FfdE~h~sLvdtIk~lL~p~g~Al~f--sPRR-g~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 101 QHTFDIILAADCL--------FFDEHHESLVDTIKSLLRPSGRALLF--SPRR-GQSLQKFLDEVGTV 157 (201)
T ss_pred hCcccEEEeccch--------hHHHHHHHHHHHHHHHhCcccceeEe--cCcc-cchHHHHHHHHHhc
Confidence 468999995 542 11123355567899999999985543 3533 33456666666555
No 338
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=28.88 E-value=44 Score=28.17 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=14.9
Q ss_pred HHHhcCCCCCeecEEEEcCCCC
Q psy4593 17 TDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 17 ~~~l~~~~~~~yDvIi~D~~dp 38 (132)
.+.|++ .+.+||+||+|.+++
T Consensus 127 ~~~L~~-~~~kFDlvi~e~~~~ 147 (507)
T PHA03392 127 KNLIAN-KNNKFDLLVTEAFLD 147 (507)
T ss_pred HHHHhc-CCCceeEEEecccch
Confidence 455553 356799999997765
No 339
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=28.88 E-value=1.5e+02 Score=19.98 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=29.4
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.+.......+|+|++|...+. .-..++.+.+++....-.++++
T Consensus 34 ~~~~~~~~~~~~~~~~~dlvl~d~~~~~--------~~~~~~~~~l~~~~~~~~ii~l 83 (211)
T PRK15369 34 QVDNGLEVYNACRQLEPDIVILDLGLPG--------MNGLDVIPQLHQRWPAMNILVL 83 (211)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHHHCCCCcEEEE
Confidence 3456665554423467999999986551 1234666777665444455554
No 340
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=28.66 E-value=77 Score=26.25 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred CCCcEEEEccHHHHhcCC---CCC----------eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 6 GYPVLSARQDCTDFMSGP---VKN----------MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~---~~~----------~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.|+.+++...+-.|.... ..+ ..|++++|=-+- .+.- .-...|||...-+....|+-+++-+
T Consensus 141 ~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~---l~gk-~~~qeefFh~FN~l~~~~kqIvlts- 215 (408)
T COG0593 141 GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQF---LAGK-ERTQEEFFHTFNALLENGKQIVLTS- 215 (408)
T ss_pred CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhH---hcCC-hhHHHHHHHHHHHHHhcCCEEEEEc-
Confidence 466677777776664321 111 689999983322 1211 2337888887776666666665532
Q ss_pred CCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 73 TLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.+.+..+..+..+|++.|.....+....|.+
T Consensus 216 --dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 216 --DRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred --CCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 2334456667789999998877777777765
No 341
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=28.54 E-value=1.8e+02 Score=20.17 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=22.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..++.+.+.......+|+|++|..-|. .-..++.+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~dlvild~~l~~--------~~g~~~~~~i~~ 68 (219)
T PRK10336 30 FTQGRQGKEALYSAPYDAVILDLTLPG--------MDGRDILREWRE 68 (219)
T ss_pred eCCHHHHHHHHhhCCCCEEEEECCCCC--------CCHHHHHHHHHh
Confidence 355555444323357999999986551 113455666654
No 342
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=28.14 E-value=80 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=20.6
Q ss_pred hcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 60 ALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 60 ~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.|+|+||+..|. | .++......++++++.-.
T Consensus 218 ~~~pDGiflSNG--P-GDP~~~~~~i~~ik~l~~ 248 (368)
T COG0505 218 ALNPDGIFLSNG--P-GDPAPLDYAIETIKELLG 248 (368)
T ss_pred hhCCCEEEEeCC--C-CChhHHHHHHHHHHHHhc
Confidence 489999999995 2 233456666666665543
No 343
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=28.04 E-value=1.8e+02 Score=21.21 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=18.2
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...+|+|++|..-|. .-..+..+.+++.
T Consensus 47 ~~~~DlvilD~~~p~--------~~G~eli~~l~~~ 74 (239)
T PRK10430 47 DTPIDLILLDIYMQQ--------ENGLDLLPVLHEA 74 (239)
T ss_pred CCCCCEEEEecCCCC--------CCcHHHHHHHHhh
Confidence 457999999987662 1134566666654
No 344
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.04 E-value=2.5e+02 Score=20.74 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHhcCCCcEEEEecCC--CCCChHHHHHHHHHHHhhCCCceE
Q psy4593 48 LFQASYFELMSRALRPGGIVCSQAGT--LWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 48 L~t~eF~~~~~~~L~p~Gil~~~~~~--~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.++.+++..+.+.+.+-|+-.++... -...+..+..+++.+++.++.+.+
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~ 193 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPL 193 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeE
Confidence 45677787777776666654433211 123566789999999999997443
No 345
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=28.01 E-value=1.7e+02 Score=20.16 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=17.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..|+.+.+.......+|+|++|..-|
T Consensus 28 ~~~~~~~~~~~~~~~~dlvl~d~~~~ 53 (218)
T TIGR01387 28 ASNGRDGLHLALKDDYDLIILDVMLP 53 (218)
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 34665555443346799999998655
No 346
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=27.71 E-value=35 Score=26.38 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=9.8
Q ss_pred CeecEEEEcCC
Q psy4593 26 NMCGLVVSGAA 36 (132)
Q Consensus 26 ~~yDvIi~D~~ 36 (132)
++||+||+|+.
T Consensus 111 ~~yD~iVvDta 121 (284)
T TIGR00345 111 NEFDVVIFDTA 121 (284)
T ss_pred ccCCEEEECCC
Confidence 67999999986
No 347
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=27.35 E-value=2.1e+02 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.236 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhCCCceEeEEeccC
Q psy4593 80 CVGNTLQHCASVFPRVAYGATCVPT 104 (132)
Q Consensus 80 ~~~~~~~~l~~vF~~v~~~~~~~p~ 104 (132)
.....++++++.| +..++.|.
T Consensus 99 ~~~~~v~RF~~~F----i~lsH~P~ 119 (195)
T cd08166 99 PIESKIRRFEKYF----IMLSHVPL 119 (195)
T ss_pred cCHHHHHHHHHhh----eeeecccc
Confidence 3466777888888 44556664
No 348
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=27.35 E-value=73 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=17.8
Q ss_pred cHHHHHHHHHhcCCCcEEEEec
Q psy4593 50 QASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+.+-+......|+|||+++.|.
T Consensus 75 ~~~~~~~~~~~l~~~g~vi~n~ 96 (177)
T PRK08537 75 SQEAYDKYLDDLKEGGTVIVDP 96 (177)
T ss_pred CHHHHHHHHhccCCCeEEEEEC
Confidence 4555667788999999999995
No 349
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=27.14 E-value=45 Score=26.59 Aligned_cols=27 Identities=11% Similarity=-0.124 Sum_probs=19.8
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCC
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPG 39 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~ 39 (132)
++.+||++..+= ...+|++++|..+|.
T Consensus 146 iilDDGfQh~~l--~rdl~Ivl~d~~~~f 172 (325)
T PRK00652 146 IILDDGLQHYRL--ARDIEIVVVDGQRGF 172 (325)
T ss_pred EEEcCCccCccc--CCCeEEEEECCCCCC
Confidence 444678887544 467999999998774
No 350
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=26.81 E-value=30 Score=22.24 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=14.0
Q ss_pred CCCCCCCcEEEEccHHH
Q psy4593 2 RSYRGYPVLSARQDCTD 18 (132)
Q Consensus 2 ~~~~d~rv~v~~~Dg~~ 18 (132)
.||.|.||+++..|+.-
T Consensus 19 ~AysDgrVr~~F~Drt~ 35 (85)
T PF15016_consen 19 TAYSDGRVRVHFDDRTI 35 (85)
T ss_pred EEEcCCeEEEEEcCCCE
Confidence 47899999999988654
No 351
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.58 E-value=29 Score=25.18 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=28.0
Q ss_pred ccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 14 QDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 14 ~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
.+|.++.++. .++.||+||+|=-.. .....|.+.+=.-.+-+ .+|.++=+
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~----A~~~gli~~~~v~~lL~-~rp~~~ev 133 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTY----ALKYGYLDVEEVVEALQ-ERPGHQHV 133 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHH----HHHCCCcCHHHHHHHHH-hCCCCCEE
Confidence 3456665542 457999999994332 23445555544434333 36766533
No 352
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=26.39 E-value=39 Score=23.45 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=31.3
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-CcccccHHHHHHHHHh-cCCCcEEEEec
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESLFQASYFELMSRA-LRPGGIVCSQA 71 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L~t~eF~~~~~~~-L~p~Gil~~~~ 71 (132)
..+.+-..+|+++ .. .-+|++|+.+. .-. .+---.-.|+..+++. +..||.+++-+
T Consensus 61 ~~l~~~i~~fl~~-~~--~~vViiD~lEY---L~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~ 118 (136)
T PF05763_consen 61 HKLLDTIVRFLKE-NG--NGVVIIDGLEY---LILENGFESVLKFLASLKDYALLNNGTLILVV 118 (136)
T ss_pred HHHHHHHHHHHHh-CC--CcEEEEecHHH---HHHHcCHHHHHHHHHHhHHHeeccCCEEEEEE
Confidence 3344456677766 32 33888887654 211 1111135777777764 46777777654
No 353
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.37 E-value=3.1e+02 Score=22.58 Aligned_cols=80 Identities=10% Similarity=0.114 Sum_probs=48.6
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC---CceEeEEec
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP---RVAYGATCV 102 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~---~v~~~~~~~ 102 (132)
+..++...++.+-....+....| .+-.+.+.+..+|.-|++.-++.+-.-.+-+..+++.+++.+| .+.+.....
T Consensus 57 ~~~~~~sT~l~E~d~VfGg~~~L--~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~t 134 (432)
T TIGR01285 57 EPIPLQTTAMDEVSTILGGDEHI--EEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAVVTVNT 134 (432)
T ss_pred CCccceeecCCCCceEECcHHHH--HHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeEEEecC
Confidence 34556666766553233444444 4556666667789888876654443333347788888887765 345556677
Q ss_pred cCcCC
Q psy4593 103 PTYPS 107 (132)
Q Consensus 103 p~~~~ 107 (132)
|.|.|
T Consensus 135 pgf~g 139 (432)
T TIGR01285 135 PDFKG 139 (432)
T ss_pred CCcCC
Confidence 87754
No 354
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=26.27 E-value=1.1e+02 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..||.+|+|+++. ++++-+..+-.-++-||++++.+
T Consensus 91 ~t~~~~VlD~~~~----------l~pn~lar~v~TvrgGG~lvil~ 126 (758)
T COG1444 91 RTFDLLVLDLTEG----------LDPNALARLVGTVRGGGLLVLLL 126 (758)
T ss_pred hhhheEEEecccC----------CCHHHHHHHHhheecceEEEEEc
Confidence 4799999999875 35677889999999999999765
No 355
>PRK08727 hypothetical protein; Validated
Probab=26.21 E-value=2.1e+02 Score=21.18 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=35.0
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
.++|+|++|=.+. .... .-.+..+|+...+.-..++ ++++-. ..+..+..+...+++.|.....+....
T Consensus 92 ~~~dlLiIDDi~~---l~~~-~~~~~~lf~l~n~~~~~~~~vI~ts~----~~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 92 EGRSLVALDGLES---IAGQ-REDEVALFDFHNRARAAGITLLYTAR----QMPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred hcCCEEEEeCccc---ccCC-hHHHHHHHHHHHHHHHcCCeEEEECC----CChhhhhhhhHHHHHHHhcCceEEecC
Confidence 4689999996553 2111 1134567765444433343 444311 233345555667777765554434333
No 356
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=26.09 E-value=99 Score=22.61 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCeecEEEEcCCCCCCCC----CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 24 VKNMCGLVVSGAAGPGRVV----CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~----~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..++||.+.+=..--+.+. .|-.+.-...-+..+++.||+||.+..-
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 3567998774222111001 2334555678899999999999998754
No 357
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=26.04 E-value=55 Score=15.67 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=7.5
Q ss_pred CeecEEEEcCC
Q psy4593 26 NMCGLVVSGAA 36 (132)
Q Consensus 26 ~~yDvIi~D~~ 36 (132)
..+|++++|..
T Consensus 43 ~~~~~vi~~~~ 53 (55)
T smart00448 43 EKPDLILLDIM 53 (55)
T ss_pred cCCCEEEEecc
Confidence 45788887753
No 358
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.79 E-value=51 Score=25.96 Aligned_cols=30 Identities=0% Similarity=-0.108 Sum_probs=23.0
Q ss_pred CCcEEEEccHHHHhcCCCC--CeecEEEEcCC
Q psy4593 7 YPVLSARQDCTDFMSGPVK--NMCGLVVSGAA 36 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~--~~yDvIi~D~~ 36 (132)
.|++++.+|-.++.....+ .++|.|+.|+-
T Consensus 68 ~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 68 GRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 5899999999998655222 27999999863
No 359
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=25.68 E-value=68 Score=23.40 Aligned_cols=57 Identities=11% Similarity=-0.037 Sum_probs=34.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..++++.+.+..+.+....=+.||+||.....+ .. .+.+-.+.+.+.++.||=++.-
T Consensus 31 ~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~---~~-----l~~~~~~al~~~v~~Ggglv~l 87 (217)
T PF06283_consen 31 SEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGG---DE-----LTDEQRAALRDYVENGGGLVGL 87 (217)
T ss_dssp TTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSC---CG-----S-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEEEeCcccCChhHhcCCCEEEEECCCC---Cc-----CCHHHHHHHHHHHHcCCCEEEE
Confidence 466777665554444331226899999876543 11 4788888888888888777653
No 360
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=25.58 E-value=38 Score=27.56 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=10.3
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.+.||+||+|+.
T Consensus 232 ~~~YD~IlID~p 243 (387)
T PHA02519 232 WDNYDIIVIDSA 243 (387)
T ss_pred hccCCEEEEECC
Confidence 467999999986
No 361
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=25.54 E-value=2.1e+02 Score=19.97 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=23.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......||+|++|..-|. .-..++.+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~dlvild~~l~~--------~~g~~~~~~lr~~ 71 (221)
T PRK10766 32 AASGAGMREIMQNQHVDLILLDINLPG--------EDGLMLTRELRSR 71 (221)
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhC
Confidence 345555544323457999999986552 1234566666553
No 362
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=25.47 E-value=1.8e+02 Score=23.54 Aligned_cols=49 Identities=6% Similarity=0.082 Sum_probs=28.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.+.......||+|++|..-|. .-..++.+.+++.-..-.++++
T Consensus 28 ~~~~~~al~~~~~~~~DlVllD~~~p~--------~~g~~ll~~l~~~~~~~~vIvl 76 (463)
T TIGR01818 28 FGNAASVLRALARGQPDLLITDVRMPG--------EDGLDLLPQIKKRHPQLPVIVM 76 (463)
T ss_pred ECCHHHHHHHHhcCCCCEEEEcCCCCC--------CCHHHHHHHHHHhCCCCeEEEE
Confidence 446666654433467999999987662 2235667777664332334443
No 363
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=25.26 E-value=1.7e+02 Score=20.01 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=22.1
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+.||+|++|.... ...+ +...-....+.+.|...=++++.
T Consensus 97 ~~~~D~viid~~g~---~~~~--~~~~~~~~dl~~~~~~~vilV~~ 137 (166)
T TIGR00347 97 EQKYDFVLVEGAGG---LCVP--ITEEYTTADLIKLLQLPVILVVR 137 (166)
T ss_pred HhcCCEEEEEcCCc---cccC--CCCCCcHHHHHHHhCCCEEEEEC
Confidence 46799999998743 2111 11111233344556666666664
No 364
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=25.24 E-value=1.9e+02 Score=21.27 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=29.4
Q ss_pred HHHHHHHHhcC----CCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 52 SYFELMSRALR----PGGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 52 eF~~~~~~~L~----p~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
+-++.+.+.|. .++++.+++.+|+...+.+..+++.+++
T Consensus 80 ~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 80 PVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 33444444442 5888889999999999989999988886
No 365
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=25.23 E-value=4.4e+02 Score=22.63 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 24 VKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 24 ~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++.||+|=.| +|+-. . ...--.+.+-.+-|+|+|+|.+++.
T Consensus 424 YPRTYDLlHA~~lfs~~---~--~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLY---K--DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred CCcchhheehhhhhhhh---c--ccccHHHHHHHhHhhcCCCceEEEe
Confidence 46789999865 44331 1 1222356678899999999999985
No 366
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=25.21 E-value=33 Score=22.04 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCcEEEEec-CC-CCC---ChHHHHHHHHHHHhhCCCc
Q psy4593 52 SYFELMSRALRPGGIVCSQA-GT-LWY---SLDCVGNTLQHCASVFPRV 95 (132)
Q Consensus 52 eF~~~~~~~L~p~Gil~~~~-~~-~~~---~~~~~~~~~~~l~~vF~~v 95 (132)
|=-+.++=.|.|.|++..|. ++ .|. .......+.+.|.+.|+.+
T Consensus 17 d~~~~~~vlL~PEgmi~Lnetg~~Iw~~~DG~~tv~eIi~~L~~~y~~~ 65 (88)
T PRK02079 17 EPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDV 65 (88)
T ss_pred ccccCceEEEcCCeeeeechHHHHHHHHccCCCCHHHHHHHHHHHccch
Confidence 33455666799999999873 22 221 2345788999999999765
No 367
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=25.09 E-value=2.5e+02 Score=19.72 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.0
Q ss_pred HhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 59 RALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 59 ~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
+....++++++.+..|+...+.+..+++.+.+...
T Consensus 85 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (193)
T PRK00317 85 KQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA 119 (193)
T ss_pred HhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence 34567889999999999888888877776654433
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.05 E-value=2.5e+02 Score=20.19 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=35.7
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCC--ceEeEEeccC
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPR--VAYGATCVPT 104 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~--v~~~~~~~p~ 104 (132)
..|++|+-+..|....+.+.--+=..-.+.+...|+++-++++.+.-+ ....+++++.+.+.... ..++.++.|.
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp---pGtt~~~~~~ile~~~~~~~~f~la~~PE 152 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP---PGTTEELLKPILEKRSGKKEDFHLAYSPE 152 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS---TTHHHHHHHHHHHHHCCTTTCEEEEE---
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE---EeeehHhhhhhhhhhcccccCCeEEECCC
Confidence 478999877766211122222233555678888999988888764222 22344344444433221 4455666776
Q ss_pred c
Q psy4593 105 Y 105 (132)
Q Consensus 105 ~ 105 (132)
+
T Consensus 153 r 153 (185)
T PF03721_consen 153 R 153 (185)
T ss_dssp -
T ss_pred c
Confidence 6
No 369
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=24.90 E-value=41 Score=27.51 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=10.3
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.+.||+||+|+.
T Consensus 249 ~~~yD~IiIDtp 260 (405)
T PRK13869 249 ADDYDVVVIDCP 260 (405)
T ss_pred hccCCEEEEECC
Confidence 457999999986
No 370
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=24.78 E-value=2.4e+02 Score=19.58 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=25.9
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.+.+.......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 34 ~~~~~~~~~~~~~~~dlvl~d~~~~~--------~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 34 ERGLPALDKLRQQPPDLVILDVGLPD--------ISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred cCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhhCCCCCEEEE
Confidence 34444433323457999999986551 2235666666654333334433
No 371
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.68 E-value=3.4e+02 Score=22.45 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCCcccccHHHHHHHHHhcCCCcE--EEEecCCCCCChHHHHHHHHHHHhhCCCceEeEE
Q psy4593 43 CPAESLFQASYFELMSRALRPGGI--VCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGAT 100 (132)
Q Consensus 43 ~~~~~L~t~eF~~~~~~~L~p~Gi--l~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~ 100 (132)
.+...-++.+|++.+...+.|..+ +++|...|. +...+..+.+..|++.+..+
T Consensus 50 D~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePD-----hsg~l~~ll~~~p~a~ii~s 104 (388)
T COG0426 50 DTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPD-----HSGSLPELLELAPNAKIICS 104 (388)
T ss_pred CCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcc-----hhhhHHHHHHhCCCCEEEee
Confidence 345567899999999999999987 455654443 34455556666666665433
No 372
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=24.60 E-value=37 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
+.+.+...|+.. ..-.+.|+|.+||
T Consensus 7 v~v~g~yaYva~---~~~Gl~IvDISnP 31 (42)
T PF08309_consen 7 VAVSGNYAYVAD---GNNGLVIVDISNP 31 (42)
T ss_pred EEEECCEEEEEe---CCCCEEEEECCCC
Confidence 445555666654 3456889999998
No 373
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=24.44 E-value=47 Score=27.02 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=10.3
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.+.||+||+|+.
T Consensus 232 ~~~YD~IiIDtp 243 (388)
T PRK13705 232 AHDYDVIVIDSA 243 (388)
T ss_pred hccCCEEEEECC
Confidence 457999999986
No 374
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=24.30 E-value=2e+02 Score=23.42 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=28.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.+.......||+|++|..-|. .-..++.+.+++....--++++
T Consensus 33 ~~s~~~al~~l~~~~~DlvllD~~lp~--------~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 33 FENGNEVLEALASKTPDVLLSDIRMPG--------MDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred ECCHHHHHHHHhcCCCCEEEECCCCCC--------CCHHHHHHHHHhhCCCCeEEEE
Confidence 345555444333467999999987662 2345667777665433334444
No 375
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.26 E-value=1.2e+02 Score=24.57 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeec-EEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCG-LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yD-vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.||.||.+|-.+.|.......-| +|++|+.|=- ..+.. .+.+..+.+-+.++..+++..
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwm-td~ql-----n~lws~isrta~~gA~VifRt 366 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWM-TDGQL-----NSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhc-ccchH-----HHHHHHHhhccCCCcEEEEec
Confidence 57999999999999863334555 4668987520 02333 556888999999999998763
No 376
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=24.17 E-value=2.3e+02 Score=20.09 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=24.6
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHH
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~ 89 (132)
|.+|=+.+.+.|++|+|++.+..--.....+.+.+.+.|.
T Consensus 11 t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 11 TLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 5667788888999999999885221122334444444443
No 377
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=23.77 E-value=2.1e+02 Score=19.77 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=16.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..++.+.+.......+|+|++|..-|
T Consensus 30 ~~~~~~~~~~~~~~~~d~illd~~~~ 55 (222)
T PRK10643 30 ASTAREAEALLESGHYSLVVLDLGLP 55 (222)
T ss_pred eCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 34555554432335699999998655
No 378
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=23.76 E-value=61 Score=23.07 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=16.4
Q ss_pred cHHHHHH--HHHhcCCCcEEEEec
Q psy4593 50 QASYFEL--MSRALRPGGIVCSQA 71 (132)
Q Consensus 50 t~eF~~~--~~~~L~p~Gil~~~~ 71 (132)
+.+.++. ..+.|+|||+++.|.
T Consensus 74 ~~~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 74 DPTLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred CHHHhCccchhhCcCCCeEEEEEC
Confidence 4555543 567899999999985
No 379
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=23.53 E-value=1.1e+02 Score=19.65 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=28.0
Q ss_pred cccccHHHHHHHHHhcCCCcE----EEEecCCCC--CChHHHHHHHHHHHhhCCCceE
Q psy4593 46 ESLFQASYFELMSRALRPGGI----VCSQAGTLW--YSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 46 ~~L~t~eF~~~~~~~L~p~Gi----l~~~~~~~~--~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
....+.+.+....+.++..+. +....|-|. .+.+.+..+++.+++.++...+
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i 83 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKI 83 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-----EE
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhhCCCceE
Confidence 345566666665555554444 455567787 4556688888888888854443
No 380
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=23.50 E-value=3e+02 Score=20.09 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCce
Q psy4593 49 FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 49 ~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~ 96 (132)
.+.+-++.++.+.+..||++.- .|.... ..+.+.+.+.+|++.
T Consensus 33 i~~~~i~~i~~~~~~rgVIIfT--DpD~~G---ekIRk~i~~~vp~~k 75 (174)
T TIGR00334 33 LKDETINLIKKAQKKQGVIILT--DPDFPG---EKIRKKIEQHLPGYE 75 (174)
T ss_pred cCHHHHHHHHHHhhcCCEEEEe--CCCCch---HHHHHHHHHHCCCCe
Confidence 3789999999999999999874 233332 467788999999876
No 381
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.20 E-value=2.9e+02 Score=22.59 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=46.2
Q ss_pred ecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC---CceEeEEeccC
Q psy4593 28 CGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP---RVAYGATCVPT 104 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~---~v~~~~~~~p~ 104 (132)
.++...++.+-....+....| .+-.+.+.+..+|.-|+++.++.+-.-.+-+..+.+.+++.+| .+.+.....|.
T Consensus 49 ~~~~sT~l~E~d~VfGg~~~L--~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~g 126 (417)
T cd01966 49 IPLQTTAMDEVSTILGGGENL--EEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPD 126 (417)
T ss_pred ccccccccCCCcEEECCHHHH--HHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCC
Confidence 344444544432222333344 4556666666789988887754443333347778888887765 45666677787
Q ss_pred cCC
Q psy4593 105 YPS 107 (132)
Q Consensus 105 ~~~ 107 (132)
|.|
T Consensus 127 f~g 129 (417)
T cd01966 127 FEG 129 (417)
T ss_pred CCC
Confidence 754
No 382
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=23.17 E-value=3.2e+02 Score=21.48 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=45.4
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhhCCCceEeEEeccC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPT 104 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~ 104 (132)
.+.++|++ .+| ..|.+..++.+.++.+.+..+.+.+++.- +-..+..... ...+...++++.+..+..-+
T Consensus 154 ~~~~~i~l--~~P---~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~----~~~~~~~~~~~i~~~SfSK~ 224 (369)
T PRK08153 154 ENAPLVYL--ANP---DNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGA----APPIDTDDPNVIRMRTFSKA 224 (369)
T ss_pred cCCcEEEE--eCC---CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCccc----chhhhhcCCCEEEEecchHh
Confidence 45677776 245 45667888999999888877764444432 1111111110 11233345666655555555
Q ss_pred c--CCCceeEEEeec
Q psy4593 105 Y--PSGQIGFVLGSQ 117 (132)
Q Consensus 105 ~--~~~~~~f~~as~ 117 (132)
+ +|=..|++++..
T Consensus 225 ~g~~GlRiG~~v~~~ 239 (369)
T PRK08153 225 YGLAGARVGYAIGAP 239 (369)
T ss_pred ccCcchheeeeecCH
Confidence 5 343567887754
No 383
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.13 E-value=1.7e+02 Score=20.99 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=8.3
Q ss_pred HHHHHHhcCCCcEEEEe
Q psy4593 54 FELMSRALRPGGIVCSQ 70 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~ 70 (132)
|..+.++|++.|.-|.-
T Consensus 118 F~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 118 FLPVINKAKENGKETIV 134 (160)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 34444455555555543
No 384
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=22.69 E-value=1.9e+02 Score=24.91 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=28.4
Q ss_pred cCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 61 LRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 61 L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.+|.. =.+|.+....+....+.+.+.++++||+..+.+...|+|
T Consensus 375 ~aPyA-DllW~ET~~Pd~~~a~~Fa~~V~~~~P~k~LaYNlSPSF 418 (526)
T PF00463_consen 375 FAPYA-DLLWMETKTPDLAQAKEFAEGVHAVYPGKKLAYNLSPSF 418 (526)
T ss_dssp HGGG--SEEEE--SS--HHHHHHHHHHHHHHSTT-EEEEEE-SSS
T ss_pred hCccc-CeeeEecCCCCHHHHHHHHHHHHHhCCcceEEecCCccc
Confidence 34544 335655554566778999999999999998888888988
No 385
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.63 E-value=61 Score=25.86 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=10.1
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
+++||+||+|+.
T Consensus 123 ~~~yD~IV~Dta 134 (322)
T COG0003 123 SGEYDVIVVDTA 134 (322)
T ss_pred ccCCCEEEEcCC
Confidence 467999999986
No 386
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=22.48 E-value=1e+02 Score=21.83 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.8
Q ss_pred cHHHHHHHHHhcCCCcEEEEec
Q psy4593 50 QASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++-+......|+|||+++.|.
T Consensus 72 ~~~~~~~~~~~l~~~g~vi~n~ 93 (170)
T PRK08338 72 HQLGYETAKSSLKEDGLLIIDT 93 (170)
T ss_pred CHHHHHHHhcccCCCeEEEEeC
Confidence 4555667778899999999985
No 387
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=22.45 E-value=88 Score=22.91 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTL 74 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~ 74 (132)
+.+.++.+.+.|+.||+++..+..-
T Consensus 7 ~~~~i~~a~~~L~~G~ii~~PTdTv 31 (201)
T TIGR00057 7 SQRGIEQAVKILRKGGIVVYPTDTV 31 (201)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCH
Confidence 3556888999999999999876543
No 388
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.43 E-value=2.4e+02 Score=22.99 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=46.2
Q ss_pred ecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC---CceEeEEeccC
Q psy4593 28 CGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP---RVAYGATCVPT 104 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~---~v~~~~~~~p~ 104 (132)
..+...++..-....+....| .+-.+.+.+..+|.-|+++.++.+-.-.+-+..+.+.+++.+| .+.+.....|.
T Consensus 49 ~~~~sT~l~E~d~V~Gg~~~L--~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 126 (428)
T cd01965 49 IPIASTSMTEDAAVFGGEDNL--IEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPS 126 (428)
T ss_pred ccCcccCCCCCCeeECcHHHH--HHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCC
Confidence 344444554432222333333 4556666666789988888765554433447888888887654 45555667787
Q ss_pred cCC
Q psy4593 105 YPS 107 (132)
Q Consensus 105 ~~~ 107 (132)
|.+
T Consensus 127 f~g 129 (428)
T cd01965 127 FKG 129 (428)
T ss_pred CCC
Confidence 754
No 389
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=22.28 E-value=72 Score=22.80 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.6
Q ss_pred ccHHHHHH--HHHhcCCCcEEEEec
Q psy4593 49 FQASYFEL--MSRALRPGGIVCSQA 71 (132)
Q Consensus 49 ~t~eF~~~--~~~~L~p~Gil~~~~ 71 (132)
+..+.+.. ....|+|||+++.|.
T Consensus 73 ~~~~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 73 QDPTLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred cCHHHhcchhHhcCcCCCcEEEEEC
Confidence 45666663 477899999999985
No 390
>PRK13856 two-component response regulator VirG; Provisional
Probab=22.27 E-value=2.5e+02 Score=20.18 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=17.8
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..|+.+.++......||+|++|..-|
T Consensus 31 ~~~~~~~~~~~~~~~~dlvi~d~~l~ 56 (241)
T PRK13856 31 VADSQQFNRVLASETVDVVVVDLNLG 56 (241)
T ss_pred ECCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 45666655443346799999998766
No 391
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=22.24 E-value=1.4e+02 Score=26.04 Aligned_cols=41 Identities=7% Similarity=-0.043 Sum_probs=26.2
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...||.+.++......||+|++|..-|. +-..+..+.+++.
T Consensus 554 ~a~~~~eal~~~~~~~~Dlvl~D~~mp~--------~~G~e~~~~ir~~ 594 (779)
T PRK11091 554 VAMTGKEALEMFDPDEYDLVLLDIQLPD--------MTGLDIARELRER 594 (779)
T ss_pred EECCHHHHHHHhhcCCCCEEEEcCCCCC--------CCHHHHHHHHHhc
Confidence 3466777665544567999999987662 2234555665543
No 392
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=22.22 E-value=3e+02 Score=19.62 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcC--CCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 51 ASYFELMSRALR--PGGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 51 ~eF~~~~~~~L~--p~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
.+-+..+...++ .+.++++++..|+.....+..+++..++
T Consensus 76 ~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 76 GHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred HHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 344555666665 5778888988887777777777777665
No 393
>KOG0922|consensus
Probab=22.21 E-value=2.2e+02 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=43.6
Q ss_pred ccHH---HHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc---EEEEecCCCCCChHHHHHHHHH
Q psy4593 14 QDCT---DFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG---IVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 14 ~Dg~---~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G---il~~~~~~~~~~~~~~~~~~~~ 87 (132)
.||. +.+.+..-.+|++||+|=.. -..+.|.=.+-.+|+.++.-. ++++. ...+. +.
T Consensus 147 TDG~LLRE~l~Dp~LskYsvIIlDEAH-------ERsl~TDiLlGlLKki~~~R~~LklIimS---ATlda-------~k 209 (674)
T KOG0922|consen 147 TDGMLLREILKDPLLSKYSVIILDEAH-------ERSLHTDILLGLLKKILKKRPDLKLIIMS---ATLDA-------EK 209 (674)
T ss_pred cchHHHHHHhcCCccccccEEEEechh-------hhhhHHHHHHHHHHHHHhcCCCceEEEEe---eeecH-------HH
Confidence 4663 44544234789999999432 335777777888888876433 33332 33343 35
Q ss_pred HHhhCCCceEeEEeccCcC
Q psy4593 88 CASVFPRVAYGATCVPTYP 106 (132)
Q Consensus 88 l~~vF~~v~~~~~~~p~~~ 106 (132)
+.+-|.++.+....--.||
T Consensus 210 fS~yF~~a~i~~i~GR~fP 228 (674)
T KOG0922|consen 210 FSEYFNNAPILTIPGRTFP 228 (674)
T ss_pred HHHHhcCCceEeecCCCCc
Confidence 5566666555444333343
No 394
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.14 E-value=39 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=27.0
Q ss_pred cHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 15 DCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 15 Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+.++.++. .++.||+||+|=-.. .....|.+.+=...+-+. +|.++=++
T Consensus 102 ~~~~~a~~~l~~~~~dlvVLDEi~~----Al~~gli~~eeVl~~L~~-rp~~~evI 152 (178)
T PRK07414 102 ELWQYTQAVVDEGRYSLVVLDELSL----AIQFGLIPETEVLEFLEK-RPSHVDVI 152 (178)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhHH----HHHCCCccHHHHHHHHHh-CCCCCEEE
Confidence 355554442 457899999994322 233455554444333332 57765333
No 395
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=22.06 E-value=2.6e+02 Score=18.77 Aligned_cols=48 Identities=13% Similarity=-0.032 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEe
Q psy4593 62 RPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLG 115 (132)
Q Consensus 62 ~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~a 115 (132)
.-..++++-+.+|......+....+.|++. .+. ..|+..||.|.+-+.
T Consensus 59 g~~~vvliGsD~P~l~~~~l~~A~~~L~~~--d~V----lgPa~DGGy~LiG~~ 106 (122)
T PF09837_consen 59 GYEPVVLIGSDCPDLTPDDLEQAFEALQRH--DVV----LGPAEDGGYYLIGLR 106 (122)
T ss_dssp T-SEEEEE-SS-TT--HHHHHHHHHHTTT---SEE----EEEBTTSSEEEEEEE
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHhccC--CEE----EeeccCCCEEEEecC
Confidence 344677777888888888888888888776 333 378888887755443
No 396
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=21.86 E-value=1.2e+02 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCcEEEEec
Q psy4593 52 SYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 52 eF~~~~~~~L~p~Gil~~~~ 71 (132)
+-+......|+|||+++.|.
T Consensus 78 ~~~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 78 LEALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred HHHHHHHHhcCCCcEEEEEC
Confidence 33456677899999999995
No 397
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.83 E-value=1.8e+02 Score=24.40 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=46.4
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CCCC----------CChHHHHHHHHHHHhhC
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GTLW----------YSLDCVGNTLQHCASVF 92 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~~~----------~~~~~~~~~~~~l~~vF 92 (132)
.+.|-+|+-..- | ...+.| ..-|+.+|+.|...|.|-..- .-|. .....++.++.++++.|
T Consensus 88 rG~YQi~~~~~~-p----~G~G~L--~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~ 160 (440)
T COG1570 88 RGDYQIVAESME-P----AGLGAL--YLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRF 160 (440)
T ss_pred CCceEEEEecCC-c----CChhHH--HHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhC
Confidence 367888877664 4 222344 345899999999999985321 0011 12347899999999999
Q ss_pred CCceEeEE
Q psy4593 93 PRVAYGAT 100 (132)
Q Consensus 93 ~~v~~~~~ 100 (132)
|.+.++..
T Consensus 161 P~~~viv~ 168 (440)
T COG1570 161 PSVEVIVY 168 (440)
T ss_pred CCCeEEEE
Confidence 98877543
No 398
>PRK10693 response regulator of RpoS; Provisional
Probab=21.80 E-value=2.2e+02 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=22.3
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
.|+.+.++......+|+|++|...|. +-..++.+.+++.
T Consensus 4 ~~g~~al~~l~~~~pDlVL~D~~mp~--------~~Gle~~~~ir~~ 42 (303)
T PRK10693 4 ANGVDALELLGGFTPDLIICDLAMPR--------MNGIEFVEHLRNR 42 (303)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhc
Confidence 34444433323367999999987662 2234566665543
No 399
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=21.75 E-value=1.2e+02 Score=20.27 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhhCCCceEeEEeccCcCCCc
Q psy4593 77 SLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQ 109 (132)
Q Consensus 77 ~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~ 109 (132)
.=+.+.++.+.|++.||.. .+|.+|+..
T Consensus 37 rY~eF~~Lh~kLk~~FP~~-----~lP~LP~k~ 64 (109)
T cd07290 37 TFEEFQELHNKLRLLFPSS-----KLPSFPSRF 64 (109)
T ss_pred eHHHHHHHHHHHHHHCccc-----cCCCCCCCc
Confidence 3457899999999999964 479998743
No 400
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=21.74 E-value=1.9e+02 Score=17.09 Aligned_cols=48 Identities=8% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 54 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
++.+.+.++|+-++..+ ..+....+.+...++.+.+.++...+-...+
T Consensus 13 ~~~i~~~~~~d~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (102)
T PF12680_consen 13 LDAIAALFAPDAVFHDP-GGTLRGREAIREFFEEFFESFPDIRFEIHDI 60 (102)
T ss_dssp HHHHHHTEEEEEEEEET-TSEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeC-CCcccCHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 36778899999887755 4445577778888888888777666544443
No 401
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.72 E-value=39 Score=24.23 Aligned_cols=12 Identities=0% Similarity=0.224 Sum_probs=10.2
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.+.||+||+|+.
T Consensus 125 ~~~yD~ViiD~p 136 (204)
T TIGR01007 125 RKYFDYIIIDTP 136 (204)
T ss_pred HhcCCEEEEeCC
Confidence 467999999985
No 402
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.70 E-value=64 Score=25.68 Aligned_cols=53 Identities=21% Similarity=0.060 Sum_probs=33.4
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCCCCC--CCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV--CPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~--~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++.+||++..+= ...+|++++|...|.... -|++.| +.-...|+.=-+++++.
T Consensus 132 iilDDGfQh~~L--~rDl~Ivl~D~~~~~gng~lLPaG~L------REp~~~l~rAD~vi~~~ 186 (326)
T PF02606_consen 132 IILDDGFQHRRL--KRDLDIVLVDADRPFGNGFLLPAGPL------REPLSALKRADAVIVTG 186 (326)
T ss_pred EEEcCCcccccc--cCCcEEEEEeCCCCCcCCccCCCCcc------cCChhHhCcccEEEEcC
Confidence 556889887643 467999999987774211 244454 44444566666777653
No 403
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=21.60 E-value=3.4e+02 Score=20.92 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=24.5
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..+|+||+=+... .+.+.++.++..++++++++.
T Consensus 71 ~~~D~vilavK~~----------~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTT----------ANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCC----------ChHhHHHHHhhhcCCCCEEEE
Confidence 4678888766433 136778888999999997753
No 404
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=21.54 E-value=1.3e+02 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhhCCCceEeEEeccCcCCC
Q psy4593 77 SLDCVGNTLQHCASVFPRVAYGATCVPTYPSG 108 (132)
Q Consensus 77 ~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~ 108 (132)
.-+.+.++.+.|++.||.. .+|.+|+.
T Consensus 37 ry~eF~~Lh~kL~~~Fp~~-----~lP~lP~k 63 (109)
T cd07289 37 TFDEFQELHNKLSILFPLW-----KLPGFPNK 63 (109)
T ss_pred eHHHHHHHHHHHHHHCCcc-----cCCCCCCC
Confidence 3457899999999999954 38999875
No 405
>KOG0054|consensus
Probab=21.53 E-value=5.6e+02 Score=24.95 Aligned_cols=68 Identities=15% Similarity=-0.033 Sum_probs=49.3
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGA 99 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~ 99 (132)
+.+-|..+.+. |-.-..-.+.-+=.++..|+..=|+++-=.....+.+.-.-+.+|+|+.|.++.+..
T Consensus 1262 p~~Ld~~v~eg-------G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1262 PGGLDSEVSEG-------GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred CcCCCceecCC-------CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 44555555543 222244568889999999999999998643444566677888999999999998744
No 406
>PTZ00062 glutaredoxin; Provisional
Probab=21.47 E-value=3.1e+02 Score=20.30 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=29.3
Q ss_pred cEEEEecCCCCCC-hHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 65 GIVCSQAGTLWYS-LDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 65 Gil~~~~~~~~~~-~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
|..+....++|-. =..+..++..|.+.||++..+....
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~ 56 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL 56 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 7777775556653 3578999999999999999887653
No 407
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=21.34 E-value=36 Score=24.64 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=23.4
Q ss_pred cHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccH-HHHHHHHHhcCCCcEEEE
Q psy4593 15 DCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQA-SYFELMSRALRPGGIVCS 69 (132)
Q Consensus 15 Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~-eF~~~~~~~L~p~Gil~~ 69 (132)
.|.++.++. ....||+||+|=... .....|.+. +..+.+. -+|.++=++
T Consensus 83 ~~~~~a~~~i~~~~~dlvILDEi~~----a~~~gll~~~~v~~~l~--~rp~~~evV 133 (172)
T PF02572_consen 83 EGLEEAKEAISSGEYDLVILDEINY----AVDYGLLSEEEVLDLLE--NRPESLEVV 133 (172)
T ss_dssp HHHHHHHHHTT-TT-SEEEEETHHH----HHHTTSS-HHHHHHHHH--TS-TT-EEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHH----HhHCCCccHHHHHHHHH--cCCCCeEEE
Confidence 345554442 357899999994321 223345544 4555555 356665444
No 408
>PHA02748 viral inexin-like protein; Provisional
Probab=21.29 E-value=1.8e+02 Score=23.55 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 51 ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.+-.+.+.+.|+.||++++.--+.-.+.-..++++..|-+.|.
T Consensus 311 ~~~~~~v~~~l~~ddwFlL~~l~~N~~~~~~~eli~~L~~~~~ 353 (360)
T PHA02748 311 ADDIAVVYNKLQIGDWFLLHMLRKNINPLAYKELISRLAQHFD 353 (360)
T ss_pred HHHHHHHHHhCCcCCEEEhhHhhhhCChHHHHHHHHHHHHHcc
Confidence 4556678999999999997532222345567888888888875
No 409
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=21.15 E-value=2e+02 Score=21.12 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=25.2
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...||.+.+.......+|+|++|..-|. +-..++.+.+++.
T Consensus 33 ~a~~~~eal~~l~~~~~DlvllD~~mp~--------~dG~~~l~~i~~~ 73 (262)
T TIGR02875 33 VAHNGVDALELIKEQQPDVVVLDIIMPH--------LDGIGVLEKLNEI 73 (262)
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHhh
Confidence 3456666655433467999999987652 2234556666543
No 410
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=21.08 E-value=2.6e+02 Score=20.26 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=26.5
Q ss_pred HHHHHHhcCC--CcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 54 FELMSRALRP--GGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 54 ~~~~~~~L~p--~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
+..+.+.+.+ ++++++++..|+.....+..+++..++
T Consensus 79 ~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~ 117 (239)
T cd02517 79 IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKD 117 (239)
T ss_pred HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 3444455765 678888998888887778887777654
No 411
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.99 E-value=2.4e+02 Score=18.14 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=35.0
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC---CCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR---PGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
.+.-|+||+..-.= ...+ ..+.++.+++..+ |+..+++-.+-+.... ..+++.+|+|..+
T Consensus 34 ~e~AD~iiiNTC~V---~~~A----e~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~-------~~l~~~~p~vd~v 96 (98)
T PF00919_consen 34 PEEADVIIINTCTV---RESA----EQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG-------EELKKEFPEVDLV 96 (98)
T ss_pred cccCCEEEEEcCCC---CcHH----HHHHHHHHHHHHHhcCCCCEEEEEeCccccCh-------HHHHhhCCCeEEE
Confidence 46789999886432 2222 4555555554443 6687776543332222 5777888877653
No 412
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=20.99 E-value=2.7e+02 Score=19.28 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=26.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.+.......+|+|++|..-|. .-..++.+.+++. ..-.++++
T Consensus 30 ~~~~~~~l~~~~~~~~dlvi~d~~~~~--------~~g~~~~~~l~~~-~~~~ii~l 77 (223)
T PRK11517 30 VSDGRDGLYLALKDDYALIILDIMLPG--------MDGWQILQTLRTA-KQTPVICL 77 (223)
T ss_pred ECCHHHHHHHHhcCCCCEEEEECCCCC--------CCHHHHHHHHHcC-CCCCEEEE
Confidence 345555544323467999999986552 1234556665542 33344443
No 413
>PRK10651 transcriptional regulator NarL; Provisional
Probab=20.93 E-value=2.8e+02 Score=18.87 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=16.9
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..++.+.+.......+|+|++|..-+
T Consensus 38 ~~~~~~~~~~~~~~~~dlvl~d~~l~ 63 (216)
T PRK10651 38 ASNGEQGIELAESLDPDLILLDLNMP 63 (216)
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 44555555443345799999998655
No 414
>PHA00691 hypothetical protein
Probab=20.92 E-value=40 Score=20.13 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=32.2
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cc----cccHHHH--HHHHHhcCCCcEE
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ES----LFQASYF--ELMSRALRPGGIV 67 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~----L~t~eF~--~~~~~~L~p~Gil 67 (132)
|-.+.|+-|+-+ .++.|-|.|..++.. .+-+ -. -.+..-+ .-+.+.|+|-|-+
T Consensus 8 I~~ENGr~WVL~-K~~~Y~V~vSG~THS---T~DS~Y~lsda~~~iA~~R~DYLArk~npaggl 67 (68)
T PHA00691 8 IAYENGRVWVLK-KSDSYTVFVSGVTHS---TSDSTYELSDAESGIAKARADYLARKLNPAGGL 67 (68)
T ss_pred hhccCCeEEEEE-eCCcEEEEEeccccc---ccccccccccchhhHHHHHHHHHHHhcCCCcCc
Confidence 456778888777 678999999887754 2211 11 1122222 2356788887754
No 415
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=20.85 E-value=2.9e+02 Score=19.27 Aligned_cols=26 Identities=8% Similarity=0.016 Sum_probs=17.2
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..|+.+.+.......+|+|++|..-|
T Consensus 31 ~~~~~~~~~~~~~~~~dlvild~~l~ 56 (225)
T PRK10529 31 AETLQRGLLEAATRKPDLIILDLGLP 56 (225)
T ss_pred eCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 34555555442346799999998765
No 416
>KOG2352|consensus
Probab=20.81 E-value=2.8e+02 Score=23.60 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=34.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEE----cCCCCCCCCCCCccc----ccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVS----GAAGPGRVVCPAESL----FQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~----D~~dp~~~~~~~~~L----~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+-.+....|...-.- .+++||+||- |.... ....+ .-...+..+++.|+++|.+..
T Consensus 96 ~~~~~~~~d~~~l~f--edESFdiVIdkGtlDal~~-----de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 96 PEMQMVEMDMDQLVF--EDESFDIVIDKGTLDALFE-----DEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cceEEEEecchhccC--CCcceeEEEecCccccccC-----CchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 334455555444221 4789999994 44432 22222 344567789999999999764
No 417
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=20.78 E-value=71 Score=24.09 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=10.6
Q ss_pred CCeecEEEEcCCC
Q psy4593 25 KNMCGLVVSGAAG 37 (132)
Q Consensus 25 ~~~yDvIi~D~~d 37 (132)
.+.||.|++|+..
T Consensus 116 ~~~yD~iliD~~~ 128 (275)
T PRK13233 116 TDDLDFVFFDVLG 128 (275)
T ss_pred cCCCCEEEEecCC
Confidence 4679999999943
No 418
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=20.63 E-value=95 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.9
Q ss_pred ccHHHHHHH--HHhcCCCcEEEEec
Q psy4593 49 FQASYFELM--SRALRPGGIVCSQA 71 (132)
Q Consensus 49 ~t~eF~~~~--~~~L~p~Gil~~~~ 71 (132)
++.+.++.. .+.|+|||+++.|.
T Consensus 73 ~~~~~~~~~~~~~~l~~~g~vi~n~ 97 (185)
T PRK14029 73 LDPSLLDTVDVTAGLKDGGIVIVNT 97 (185)
T ss_pred cCHHHhhhchHhhCcCCCcEEEEEC
Confidence 456667654 78899999999985
No 419
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=20.54 E-value=59 Score=23.58 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=10.2
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.++||+|++|+.
T Consensus 114 ~~~yD~ilID~~ 125 (212)
T cd02117 114 EDDLDVVLYDVL 125 (212)
T ss_pred ccCCCEEEEecC
Confidence 468999999983
No 420
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=20.51 E-value=1.1e+02 Score=22.91 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=15.4
Q ss_pred cEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCC
Q psy4593 29 GLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRP 63 (132)
Q Consensus 29 DvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p 63 (132)
|+|+ +|+-.| |.+.+.+..+.+.++.
T Consensus 93 d~VlIHDaaRP---------fv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 93 DIVLIHDAARP---------FVSPELIDRVIEAARE 119 (221)
T ss_dssp SEEEEEETTST---------T--HHHHHHHHHHHHH
T ss_pred CEEEEEccccC---------CCCHHHHHHHHHHHHh
Confidence 4444 576555 6667777777777765
No 421
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=20.25 E-value=4.7e+02 Score=22.12 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=26.0
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
+||.+.++....+.+|+|++|.--|. .-..++++.+++.=
T Consensus 35 ~~~~~al~~i~~~~~~lvl~Di~mp~--------~~Gl~ll~~i~~~~ 74 (464)
T COG2204 35 ESAEEALEALSESPFDLVLLDIRMPG--------MDGLELLKEIKSRD 74 (464)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--------CchHHHHHHHHhhC
Confidence 44555544433347999999997772 22467788888765
No 422
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.24 E-value=4.5e+02 Score=20.99 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCC-CChHHHHHHHHHHHhhCCC
Q psy4593 51 ASYFELMSRALRPGGIVCSQAGTLW-YSLDCVGNTLQHCASVFPR 94 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~~~~~~-~~~~~~~~~~~~l~~vF~~ 94 (132)
.+|.+.+++.|+++.++++...-|. ...+.+.++++.+++.=..
T Consensus 117 ~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~ 161 (310)
T COG1105 117 EQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAK 161 (310)
T ss_pred HHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCe
Confidence 4556666666777777766543332 3556677777777776333
No 423
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.17 E-value=3.1e+02 Score=21.38 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=31.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC-CCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR-PGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~-p~Gil~~~ 70 (132)
.++++++.+|+.++- -..||+|+.+++- . .-|+..++.+..... ...++++|
T Consensus 84 ~~~v~ii~~Dal~~~----~~~~d~VvaNlPY-----~----Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 84 ASKLEVIEGDALKTE----FPYFDVCVANVPY-----Q----ISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CCcEEEEECCHhhhc----ccccCEEEecCCc-----c----cCcHHHHHHHhcCCCCceeeeeeh
Confidence 468999999998852 2468999987632 2 224555666543222 23444444
No 424
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=20.13 E-value=1.9e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=30.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+.++|++- .| ..|.+..++.+-.+.+.+..+..|++++
T Consensus 172 ~~~~~i~l~--nP---~NPTG~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 172 PKIDIIYLC--SP---NNPTGTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CCceEEEEe--CC---CCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 456888883 56 5778889999999998888887777665
No 425
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.05 E-value=3.1e+02 Score=18.94 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=34.6
Q ss_pred cHHHHHHHHH--hcCCCcEEEEecCCCCC---C----hHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 50 QASYFELMSR--ALRPGGIVCSQAGTLWY---S----LDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 50 t~eF~~~~~~--~L~p~Gil~~~~~~~~~---~----~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
+.++.+.+.+ ..+|+-|+++-..+-.. . .+-+..+++.+++..|++.++...+|.+
T Consensus 53 ~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~ 117 (191)
T cd01836 53 SADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPL 117 (191)
T ss_pred HHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCc
Confidence 5666666654 45677666643322211 1 2346788888888888888877766654
Done!