Query psy4593
Match_columns 132
No_of_seqs 140 out of 1102
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 20:54:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o4f_A Spermidine synthase; am 100.0 1.6E-33 5.6E-38 217.7 10.2 114 3-120 134-247 (294)
2 3adn_A Spermidine synthase; am 99.9 6.4E-26 2.2E-30 175.1 9.0 114 3-120 134-247 (294)
3 3c6k_A Spermine synthase; sper 99.9 2.3E-25 7.7E-30 177.1 7.8 114 6-121 261-381 (381)
4 1iy9_A Spermidine synthase; ro 99.9 1.8E-24 6.3E-29 165.2 12.5 114 3-120 125-238 (275)
5 2i7c_A Spermidine synthase; tr 99.9 1.2E-23 4E-28 161.2 11.7 111 4-118 129-239 (283)
6 2b2c_A Spermidine synthase; be 99.9 3.8E-23 1.3E-27 160.9 11.0 115 4-122 159-273 (314)
7 2o07_A Spermidine synthase; st 99.9 6.2E-23 2.1E-27 158.9 10.8 117 4-124 146-262 (304)
8 1inl_A Spermidine synthase; be 99.9 1.5E-22 5E-27 156.1 12.1 114 4-120 141-254 (296)
9 2pt6_A Spermidine synthase; tr 99.9 3.7E-22 1.3E-26 155.5 10.9 113 4-120 167-279 (321)
10 3bwc_A Spermidine synthase; SA 99.9 1.9E-21 6.3E-26 150.3 12.3 114 4-120 146-260 (304)
11 2qfm_A Spermine synthase; sper 99.9 9.9E-22 3.4E-26 155.6 9.5 113 3-120 238-363 (364)
12 1uir_A Polyamine aminopropyltr 99.9 1.5E-21 5E-26 151.6 8.6 115 4-120 129-244 (314)
13 1mjf_A Spermidine synthase; sp 99.8 7.1E-21 2.4E-25 145.5 10.3 108 5-118 132-239 (281)
14 1xj5_A Spermidine synthase 1; 99.8 2.2E-20 7.5E-25 146.4 13.2 112 4-118 171-283 (334)
15 3gjy_A Spermidine synthase; AP 99.8 1.2E-19 4.2E-24 141.5 10.1 111 5-120 137-249 (317)
16 2cmg_A Spermidine synthase; tr 99.8 9E-19 3.1E-23 133.0 6.8 98 4-120 121-218 (262)
17 3vyw_A MNMC2; tRNA wobble urid 98.8 4.1E-08 1.4E-12 76.1 9.7 98 5-120 162-262 (308)
18 2qy6_A UPF0209 protein YFCK; s 98.7 2.1E-08 7.1E-13 75.8 6.9 95 7-119 150-248 (257)
19 3tfw_A Putative O-methyltransf 98.4 3.5E-06 1.2E-10 62.4 10.7 107 7-126 115-233 (248)
20 1sui_A Caffeoyl-COA O-methyltr 98.3 2E-06 6.7E-11 64.0 7.8 98 6-117 130-245 (247)
21 3c3y_A Pfomt, O-methyltransfer 98.3 9.7E-07 3.3E-11 65.1 5.9 98 6-117 121-235 (237)
22 3dr5_A Putative O-methyltransf 98.3 7.2E-06 2.5E-10 60.0 10.2 99 6-121 108-216 (221)
23 3c3p_A Methyltransferase; NP_9 98.2 2.7E-06 9.1E-11 61.0 6.7 95 7-118 108-209 (210)
24 3r3h_A O-methyltransferase, SA 98.1 1E-05 3.6E-10 59.8 8.1 102 7-125 112-228 (242)
25 3ntv_A MW1564 protein; rossman 98.1 1.2E-05 4.1E-10 58.7 7.7 53 7-70 122-175 (232)
26 3orh_A Guanidinoacetate N-meth 98.0 4.2E-06 1.4E-10 61.6 4.2 61 6-69 107-168 (236)
27 3duw_A OMT, O-methyltransferas 98.0 2E-05 6.7E-10 56.7 7.4 54 7-70 110-166 (223)
28 3cbg_A O-methyltransferase; cy 97.9 3.2E-05 1.1E-09 56.5 6.8 97 7-117 124-231 (232)
29 2avd_A Catechol-O-methyltransf 97.9 3E-05 1E-09 55.9 6.3 54 7-70 121-178 (229)
30 2igt_A SAM dependent methyltra 97.8 0.00011 3.6E-09 57.1 9.6 99 6-106 202-309 (332)
31 2hnk_A SAM-dependent O-methylt 97.8 3.4E-05 1.2E-09 56.3 6.4 101 7-121 112-234 (239)
32 3dxy_A TRNA (guanine-N(7)-)-me 97.8 4.5E-05 1.6E-09 55.6 6.5 81 7-91 84-166 (218)
33 1dus_A MJ0882; hypothetical pr 97.8 7.2E-05 2.5E-09 51.8 7.2 80 7-99 102-181 (194)
34 3ps9_A TRNA 5-methylaminomethy 97.8 2.2E-05 7.4E-10 65.8 4.9 63 7-73 156-221 (676)
35 1xdz_A Methyltransferase GIDB; 97.7 0.00049 1.7E-08 50.2 11.3 99 7-119 120-220 (240)
36 1yzh_A TRNA (guanine-N(7)-)-me 97.7 0.00012 4.2E-09 52.4 7.7 84 7-94 91-176 (214)
37 3mb5_A SAM-dependent methyltra 97.7 3.3E-05 1.1E-09 56.6 4.6 75 7-100 145-222 (255)
38 3pvc_A TRNA 5-methylaminomethy 97.7 4E-05 1.4E-09 64.4 5.7 62 8-73 149-213 (689)
39 3tr6_A O-methyltransferase; ce 97.7 0.00011 3.7E-09 52.8 6.7 54 7-70 116-173 (225)
40 2yvl_A TRMI protein, hypotheti 97.6 5.6E-05 1.9E-09 54.9 4.4 77 7-101 140-216 (248)
41 3u81_A Catechol O-methyltransf 97.6 0.00011 3.6E-09 53.1 5.7 57 7-71 110-170 (221)
42 3lpm_A Putative methyltransfer 97.6 0.00033 1.1E-08 51.8 8.4 85 7-96 99-197 (259)
43 1boo_A Protein (N-4 cytosine-s 97.6 0.00013 4.6E-09 56.2 6.3 69 3-74 9-87 (323)
44 2ozv_A Hypothetical protein AT 97.6 0.00028 9.5E-09 52.5 7.7 86 7-99 90-193 (260)
45 4dzr_A Protein-(glutamine-N5) 97.5 7.2E-05 2.5E-09 52.7 4.1 105 8-119 80-206 (215)
46 1zx0_A Guanidinoacetate N-meth 97.5 6.6E-05 2.2E-09 54.6 4.0 61 7-69 108-168 (236)
47 2b78_A Hypothetical protein SM 97.5 0.00034 1.2E-08 55.1 7.8 81 8-88 264-348 (385)
48 3e05_A Precorrin-6Y C5,15-meth 97.5 0.00067 2.3E-08 47.9 8.5 75 7-98 90-165 (204)
49 1ej0_A FTSJ; methyltransferase 97.5 0.0002 7E-09 48.5 5.4 85 7-98 62-159 (180)
50 3eey_A Putative rRNA methylase 97.4 0.0017 5.7E-08 45.5 10.3 63 7-70 74-138 (197)
51 2fca_A TRNA (guanine-N(7)-)-me 97.4 0.00039 1.3E-08 50.1 7.1 81 7-91 88-169 (213)
52 2frn_A Hypothetical protein PH 97.4 0.00013 4.5E-09 54.8 4.7 77 7-97 175-253 (278)
53 3dou_A Ribosomal RNA large sub 97.4 0.00037 1.3E-08 49.6 6.8 105 7-118 62-181 (191)
54 1l3i_A Precorrin-6Y methyltran 97.4 0.001 3.4E-08 45.8 8.7 75 7-98 82-157 (192)
55 2pwy_A TRNA (adenine-N(1)-)-me 97.4 0.00012 4.1E-09 53.4 4.1 75 6-99 147-223 (258)
56 1wxx_A TT1595, hypothetical pr 97.4 0.00074 2.5E-08 52.9 8.9 87 8-97 258-352 (382)
57 3p9n_A Possible methyltransfer 97.4 0.00032 1.1E-08 49.1 5.9 59 7-71 93-153 (189)
58 2b25_A Hypothetical protein; s 97.4 0.00014 4.9E-09 55.8 4.2 69 7-91 167-235 (336)
59 4dmg_A Putative uncharacterize 97.4 0.0006 2E-08 54.1 7.8 71 10-85 264-340 (393)
60 3ajd_A Putative methyltransfer 97.3 0.00044 1.5E-08 51.8 6.4 87 7-97 134-235 (274)
61 2zig_A TTHA0409, putative modi 97.3 0.00043 1.5E-08 52.5 6.3 68 6-73 19-99 (297)
62 1yb2_A Hypothetical protein TA 97.3 0.00014 4.7E-09 54.4 3.2 74 7-99 162-236 (275)
63 3ckk_A TRNA (guanine-N(7)-)-me 97.3 0.00041 1.4E-08 51.0 5.6 82 6-91 101-184 (235)
64 1g60_A Adenine-specific methyl 97.3 0.00026 8.8E-09 52.8 4.5 61 8-71 4-74 (260)
65 3g89_A Ribosomal RNA small sub 97.3 0.0028 9.5E-08 46.9 10.2 97 7-117 130-228 (249)
66 1g8a_A Fibrillarin-like PRE-rR 97.3 0.0026 8.8E-08 45.6 9.7 97 7-116 122-225 (227)
67 3hm2_A Precorrin-6Y C5,15-meth 97.3 0.0021 7E-08 44.0 8.8 68 8-92 77-144 (178)
68 3c0k_A UPF0064 protein YCCW; P 97.3 0.0015 5.2E-08 51.3 9.0 87 8-96 272-365 (396)
69 1i9g_A Hypothetical protein RV 97.2 0.0003 1E-08 52.1 4.6 75 6-98 152-228 (280)
70 3njr_A Precorrin-6Y methylase; 97.2 0.0026 8.8E-08 45.4 9.4 66 8-91 105-170 (204)
71 1eg2_A Modification methylase 97.2 0.00062 2.1E-08 52.6 6.3 65 6-73 36-108 (319)
72 1o54_A SAM-dependent O-methylt 97.2 0.00015 5E-09 54.1 2.5 72 7-97 164-236 (277)
73 4hg2_A Methyltransferase type 97.2 0.00072 2.5E-08 50.5 6.1 76 4-89 78-153 (257)
74 2xyq_A Putative 2'-O-methyl tr 97.2 0.00046 1.6E-08 52.8 5.0 99 8-117 106-210 (290)
75 2p41_A Type II methyltransfera 97.2 0.00047 1.6E-08 52.9 5.0 81 7-98 131-216 (305)
76 2vdv_E TRNA (guanine-N(7)-)-me 97.1 0.00095 3.3E-08 48.8 6.3 65 7-71 107-173 (246)
77 2bm8_A Cephalosporin hydroxyla 97.1 0.00051 1.8E-08 50.4 4.6 55 6-70 129-186 (236)
78 3v97_A Ribosomal RNA large sub 97.1 0.00058 2E-08 58.0 5.5 65 6-73 589-659 (703)
79 2fpo_A Methylase YHHF; structu 97.1 0.00056 1.9E-08 48.8 4.5 56 7-71 103-160 (202)
80 3fpf_A Mtnas, putative unchara 97.1 0.00096 3.3E-08 51.3 6.0 51 7-71 172-222 (298)
81 3evz_A Methyltransferase; NYSG 97.1 0.0023 8E-08 45.8 7.8 86 8-97 105-202 (230)
82 3axs_A Probable N(2),N(2)-dime 97.1 0.0005 1.7E-08 54.7 4.6 50 9-70 107-157 (392)
83 3m6w_A RRNA methylase; rRNA me 97.1 0.00082 2.8E-08 54.6 5.9 84 9-97 153-253 (464)
84 3m4x_A NOL1/NOP2/SUN family pr 97.1 0.00072 2.5E-08 54.8 5.4 82 7-93 156-254 (456)
85 2wk1_A NOVP; transferase, O-me 97.1 0.00052 1.8E-08 52.3 4.3 56 6-70 188-243 (282)
86 2plw_A Ribosomal RNA methyltra 97.1 0.00066 2.3E-08 47.6 4.6 87 25-118 104-196 (201)
87 2ift_A Putative methylase HI07 97.0 0.00044 1.5E-08 49.3 3.4 57 7-71 104-163 (201)
88 2gpy_A O-methyltransferase; st 97.0 0.00018 6.2E-09 52.1 1.3 54 7-70 105-159 (233)
89 2oo3_A Protein involved in cat 97.0 0.0028 9.6E-08 48.4 7.8 81 6-95 136-220 (283)
90 3k6r_A Putative transferase PH 97.0 0.0011 3.7E-08 50.4 5.4 50 7-70 175-224 (278)
91 3e8s_A Putative SAM dependent 97.0 0.0046 1.6E-07 43.6 8.4 57 7-71 94-152 (227)
92 2as0_A Hypothetical protein PH 97.0 0.0011 3.7E-08 52.1 5.5 74 8-85 268-349 (396)
93 3dmg_A Probable ribosomal RNA 96.9 0.0029 9.9E-08 49.9 7.6 80 8-98 281-360 (381)
94 2esr_A Methyltransferase; stru 96.9 0.0003 1E-08 48.6 1.7 56 7-71 81-138 (177)
95 3mti_A RRNA methylase; SAM-dep 96.9 0.0034 1.2E-07 43.4 7.2 60 7-70 70-134 (185)
96 2yx1_A Hypothetical protein MJ 96.9 0.0012 4.1E-08 51.0 5.0 65 7-92 243-307 (336)
97 1sqg_A SUN protein, FMU protei 96.9 0.0021 7.1E-08 51.2 6.4 65 8-74 296-377 (429)
98 3sm3_A SAM-dependent methyltra 96.8 0.0026 8.9E-08 45.2 6.1 58 7-70 83-140 (235)
99 1ixk_A Methyltransferase; open 96.8 0.0029 9.9E-08 48.4 6.7 64 7-74 169-249 (315)
100 1jsx_A Glucose-inhibited divis 96.8 0.0012 4.2E-08 46.5 4.2 90 7-117 115-204 (207)
101 3dli_A Methyltransferase; PSI- 96.8 0.002 7E-08 46.5 5.5 59 8-71 82-140 (240)
102 1nt2_A Fibrillarin-like PRE-rR 96.8 0.0075 2.6E-07 43.3 8.2 81 7-96 105-191 (210)
103 3hem_A Cyclopropane-fatty-acyl 96.7 0.0033 1.1E-07 47.1 6.4 58 7-71 122-183 (302)
104 2dul_A N(2),N(2)-dimethylguano 96.7 0.0015 5.3E-08 51.5 4.4 50 9-70 114-163 (378)
105 2frx_A Hypothetical protein YE 96.7 0.0022 7.7E-08 52.1 5.5 65 7-74 168-249 (479)
106 2ld4_A Anamorsin; methyltransf 96.7 0.0027 9.1E-08 43.8 5.2 78 8-92 43-128 (176)
107 2wa2_A Non-structural protein 96.7 0.0053 1.8E-07 46.3 7.1 81 8-98 131-218 (276)
108 2yxl_A PH0851 protein, 450AA l 96.7 0.0025 8.6E-08 51.1 5.6 66 7-74 310-392 (450)
109 2qm3_A Predicted methyltransfe 96.7 0.0033 1.1E-07 49.1 6.1 50 8-65 222-271 (373)
110 2b3t_A Protein methyltransfera 96.7 0.013 4.4E-07 43.4 9.1 97 7-116 159-274 (276)
111 4dcm_A Ribosomal RNA large sub 96.6 0.0017 5.7E-08 51.1 4.3 79 8-98 276-354 (375)
112 3dtn_A Putative methyltransfer 96.6 0.011 3.8E-07 42.2 8.2 56 7-70 92-147 (234)
113 2ipx_A RRNA 2'-O-methyltransfe 96.6 0.0012 4E-08 47.8 3.0 54 7-70 126-181 (233)
114 2oxt_A Nucleoside-2'-O-methylt 96.6 0.0054 1.9E-07 46.0 6.6 99 8-118 123-228 (265)
115 4fzv_A Putative methyltransfer 96.6 0.0094 3.2E-07 46.8 8.2 82 7-89 204-304 (359)
116 4gek_A TRNA (CMO5U34)-methyltr 96.6 0.0064 2.2E-07 45.3 6.9 56 6-70 122-177 (261)
117 3dlc_A Putative S-adenosyl-L-m 96.6 0.006 2E-07 42.7 6.4 56 6-70 92-147 (219)
118 3jwg_A HEN1, methyltransferase 96.6 0.014 4.6E-07 41.4 8.4 53 7-69 84-139 (219)
119 3ocj_A Putative exported prote 96.5 0.0041 1.4E-07 46.7 5.8 58 7-71 170-227 (305)
120 3e23_A Uncharacterized protein 96.5 0.0035 1.2E-07 44.2 5.1 105 8-120 86-204 (211)
121 3cvo_A Methyltransferase-like 96.5 0.0025 8.5E-08 46.3 4.3 52 6-69 79-152 (202)
122 2fhp_A Methylase, putative; al 96.5 0.0011 3.9E-08 45.6 2.3 57 7-71 94-154 (187)
123 3i9f_A Putative type 11 methyl 96.5 0.0074 2.5E-07 41.0 6.3 53 6-70 59-111 (170)
124 3r24_A NSP16, 2'-O-methyl tran 96.4 0.0071 2.4E-07 46.8 6.5 97 10-117 155-256 (344)
125 4htf_A S-adenosylmethionine-de 96.4 0.0018 6E-08 48.1 3.0 57 7-71 117-173 (285)
126 2nyu_A Putative ribosomal RNA 96.4 0.0018 6.2E-08 45.1 2.8 84 7-98 70-168 (196)
127 3ou2_A SAM-dependent methyltra 96.4 0.002 6.8E-08 45.4 3.0 56 7-70 90-145 (218)
128 1fbn_A MJ fibrillarin homologu 96.4 0.0027 9.4E-08 45.8 3.7 100 7-118 122-228 (230)
129 3cgg_A SAM-dependent methyltra 96.3 0.0049 1.7E-07 42.3 4.8 81 7-97 89-172 (195)
130 3h2b_A SAM-dependent methyltra 96.3 0.0042 1.4E-07 43.5 4.4 102 7-120 84-197 (203)
131 3a27_A TYW2, uncharacterized p 96.3 0.0036 1.2E-07 46.7 4.3 73 7-93 169-242 (272)
132 3lbf_A Protein-L-isoaspartate 96.3 0.0027 9.3E-08 44.8 3.2 52 7-73 125-176 (210)
133 3id6_C Fibrillarin-like rRNA/T 96.2 0.0041 1.4E-07 45.9 4.0 98 7-116 125-229 (232)
134 3evf_A RNA-directed RNA polyme 96.2 0.008 2.7E-07 45.7 5.6 90 24-118 137-227 (277)
135 1ws6_A Methyltransferase; stru 96.2 0.0016 5.6E-08 44.1 1.7 55 8-71 89-147 (171)
136 3f4k_A Putative methyltransfer 96.2 0.0043 1.5E-07 44.9 3.9 55 7-71 96-150 (257)
137 3grz_A L11 mtase, ribosomal pr 96.2 0.0021 7.3E-08 45.2 2.2 92 8-124 110-202 (205)
138 3kkz_A Uncharacterized protein 96.1 0.0033 1.1E-07 46.2 3.2 55 7-71 96-150 (267)
139 3m33_A Uncharacterized protein 96.1 0.00091 3.1E-08 48.2 0.0 50 6-69 90-140 (226)
140 2ih2_A Modification methylase 96.1 0.017 5.7E-07 45.1 7.2 81 7-92 81-185 (421)
141 3q7e_A Protein arginine N-meth 96.1 0.0043 1.5E-07 48.0 3.8 58 7-70 115-172 (349)
142 2gb4_A Thiopurine S-methyltran 96.0 0.0071 2.4E-07 44.8 4.6 56 6-68 132-188 (252)
143 1r18_A Protein-L-isoaspartate( 96.0 0.0044 1.5E-07 44.5 3.2 53 6-73 144-196 (227)
144 3r0q_C Probable protein argini 96.0 0.0057 2E-07 47.8 4.1 57 7-70 112-168 (376)
145 2ex4_A Adrenal gland protein A 96.0 0.0023 7.8E-08 46.3 1.5 94 7-109 128-232 (241)
146 3jwh_A HEN1; methyltransferase 96.0 0.0056 1.9E-07 43.4 3.6 57 7-70 84-140 (217)
147 2yxd_A Probable cobalt-precorr 95.9 0.096 3.3E-06 35.3 9.8 71 7-97 83-153 (183)
148 3sso_A Methyltransferase; macr 95.9 0.0037 1.3E-07 50.2 2.7 58 5-70 262-323 (419)
149 1ve3_A Hypothetical protein PH 95.9 0.0039 1.3E-07 44.2 2.6 58 7-71 85-142 (227)
150 3mgg_A Methyltransferase; NYSG 95.9 0.0043 1.5E-07 45.6 2.9 55 7-70 87-141 (276)
151 3ofk_A Nodulation protein S; N 95.9 0.0052 1.8E-07 43.4 3.2 87 7-100 97-188 (216)
152 2nxc_A L11 mtase, ribosomal pr 95.9 0.017 5.8E-07 42.5 6.1 84 9-116 169-253 (254)
153 2p7i_A Hypothetical protein; p 95.9 0.0053 1.8E-07 43.8 3.2 54 8-71 87-141 (250)
154 3tos_A CALS11; methyltransfera 95.9 0.012 4E-07 44.3 5.2 88 6-107 157-249 (257)
155 1nkv_A Hypothetical protein YJ 95.9 0.0043 1.5E-07 44.9 2.7 53 7-70 86-139 (256)
156 2zfu_A Nucleomethylin, cerebra 95.8 0.024 8.3E-07 39.9 6.5 97 8-123 98-196 (215)
157 4fsd_A Arsenic methyltransfera 95.8 0.007 2.4E-07 47.3 3.8 60 4-70 139-202 (383)
158 3tma_A Methyltransferase; thum 95.8 0.016 5.5E-07 44.6 5.8 59 8-71 255-317 (354)
159 3hnr_A Probable methyltransfer 95.8 0.0093 3.2E-07 42.1 4.2 56 7-70 89-144 (220)
160 1g6q_1 HnRNP arginine N-methyl 95.8 0.0073 2.5E-07 46.3 3.8 57 7-69 87-143 (328)
161 2yqz_A Hypothetical protein TT 95.7 0.0053 1.8E-07 44.5 2.7 56 6-70 85-140 (263)
162 4df3_A Fibrillarin-like rRNA/T 95.7 0.0095 3.2E-07 44.1 4.1 90 6-106 125-221 (233)
163 3eld_A Methyltransferase; flav 95.7 0.016 5.5E-07 44.5 5.2 90 24-118 144-234 (300)
164 3bus_A REBM, methyltransferase 95.7 0.0092 3.2E-07 43.6 3.9 54 7-70 111-165 (273)
165 1o9g_A RRNA methyltransferase; 95.7 0.0067 2.3E-07 44.2 3.1 57 11-69 149-212 (250)
166 3dh0_A SAM dependent methyltra 95.7 0.006 2.1E-07 43.1 2.7 97 7-118 88-193 (219)
167 1dl5_A Protein-L-isoaspartate 95.6 0.0067 2.3E-07 46.1 3.1 52 7-73 126-177 (317)
168 2p35_A Trans-aconitate 2-methy 95.6 0.0062 2.1E-07 44.1 2.7 55 7-71 78-132 (259)
169 3q87_B N6 adenine specific DNA 95.6 0.025 8.7E-07 38.9 5.7 85 6-100 60-149 (170)
170 3g5l_A Putative S-adenosylmeth 95.6 0.0096 3.3E-07 43.1 3.7 56 6-70 89-144 (253)
171 1ri5_A MRNA capping enzyme; me 95.6 0.0041 1.4E-07 45.9 1.7 61 7-71 114-174 (298)
172 2fyt_A Protein arginine N-meth 95.6 0.0085 2.9E-07 46.2 3.5 56 7-68 113-168 (340)
173 2o57_A Putative sarcosine dime 95.6 0.0093 3.2E-07 44.3 3.5 54 7-70 132-186 (297)
174 2gs9_A Hypothetical protein TT 95.5 0.0092 3.1E-07 41.9 3.3 56 7-71 77-132 (211)
175 3gcz_A Polyprotein; flavivirus 95.5 0.0095 3.3E-07 45.4 3.3 90 24-118 153-244 (282)
176 1vl5_A Unknown conserved prote 95.5 0.0075 2.6E-07 43.9 2.6 55 7-70 85-139 (260)
177 2xvm_A Tellurite resistance pr 95.4 0.012 4E-07 40.7 3.5 55 7-69 80-134 (199)
178 2pbf_A Protein-L-isoaspartate 95.4 0.0055 1.9E-07 43.8 1.8 52 6-71 139-193 (227)
179 3ccf_A Cyclopropane-fatty-acyl 95.4 0.017 5.7E-07 42.6 4.5 55 7-71 100-154 (279)
180 3m70_A Tellurite resistance pr 95.4 0.011 3.9E-07 43.6 3.6 54 8-69 168-221 (286)
181 3vc1_A Geranyl diphosphate 2-C 95.4 0.0082 2.8E-07 45.2 2.8 54 7-70 167-220 (312)
182 1xxl_A YCGJ protein; structura 95.4 0.0096 3.3E-07 43.0 3.0 55 7-70 69-123 (239)
183 3lcc_A Putative methyl chlorid 95.4 0.0081 2.8E-07 43.1 2.5 81 7-97 115-204 (235)
184 3ujc_A Phosphoethanolamine N-m 95.4 0.0082 2.8E-07 43.4 2.6 57 7-70 102-158 (266)
185 1kpg_A CFA synthase;, cyclopro 95.3 0.027 9.1E-07 41.5 5.4 55 6-71 113-168 (287)
186 3l8d_A Methyltransferase; stru 95.3 0.011 3.9E-07 42.2 3.2 58 5-71 96-153 (242)
187 3bkw_A MLL3908 protein, S-aden 95.3 0.015 5.2E-07 41.5 3.8 56 6-70 88-143 (243)
188 3pfg_A N-methyltransferase; N, 95.3 0.0065 2.2E-07 44.3 1.9 57 7-70 93-150 (263)
189 2fk8_A Methoxy mycolic acid sy 95.3 0.018 6.2E-07 43.2 4.4 55 7-71 140-194 (318)
190 2px2_A Genome polyprotein [con 95.3 0.051 1.7E-06 41.1 6.7 76 15-97 131-207 (269)
191 3g5t_A Trans-aconitate 3-methy 95.3 0.01 3.5E-07 44.3 2.9 57 6-70 88-148 (299)
192 1i1n_A Protein-L-isoaspartate 95.3 0.011 3.6E-07 42.2 2.9 53 6-73 132-184 (226)
193 3d2l_A SAM-dependent methyltra 95.1 0.012 4.1E-07 42.0 2.9 58 7-70 79-136 (243)
194 2pxx_A Uncharacterized protein 95.1 0.0083 2.8E-07 41.9 1.9 61 7-71 89-159 (215)
195 2yxe_A Protein-L-isoaspartate 95.1 0.013 4.6E-07 41.3 2.9 51 7-72 128-178 (215)
196 3g2m_A PCZA361.24; SAM-depende 95.1 0.005 1.7E-07 46.0 0.7 58 7-71 133-190 (299)
197 3gu3_A Methyltransferase; alph 95.1 0.0098 3.4E-07 44.2 2.3 55 7-71 72-126 (284)
198 3thr_A Glycine N-methyltransfe 95.0 0.018 6.1E-07 42.6 3.6 62 7-71 109-175 (293)
199 2kw5_A SLR1183 protein; struct 95.0 0.019 6.3E-07 40.1 3.4 55 7-70 76-130 (202)
200 2y1w_A Histone-arginine methyl 95.0 0.016 5.5E-07 44.7 3.3 56 7-70 99-154 (348)
201 1xtp_A LMAJ004091AAA; SGPP, st 94.9 0.014 4.8E-07 42.0 2.7 57 7-70 140-196 (254)
202 2p8j_A S-adenosylmethionine-de 94.9 0.016 5.6E-07 40.4 3.0 57 7-70 71-127 (209)
203 4hc4_A Protein arginine N-meth 94.9 0.019 6.4E-07 45.3 3.6 57 6-69 131-187 (376)
204 2f8l_A Hypothetical protein LM 94.9 0.018 6.1E-07 44.2 3.3 81 8-91 185-276 (344)
205 3bxo_A N,N-dimethyltransferase 94.9 0.013 4.4E-07 41.8 2.4 58 7-70 83-140 (239)
206 3g07_A 7SK snRNA methylphospha 94.8 0.017 5.7E-07 43.3 2.9 63 7-71 154-220 (292)
207 1nv8_A HEMK protein; class I a 94.8 0.017 5.7E-07 43.5 2.9 60 7-71 173-249 (284)
208 1pjz_A Thiopurine S-methyltran 94.8 0.0046 1.6E-07 44.0 -0.2 55 5-66 80-135 (203)
209 1wzn_A SAM-dependent methyltra 94.8 0.016 5.4E-07 41.9 2.6 57 7-70 88-144 (252)
210 3bgv_A MRNA CAP guanine-N7 met 94.8 0.0083 2.8E-07 45.2 1.1 61 7-71 90-155 (313)
211 2aot_A HMT, histamine N-methyl 94.7 0.026 8.8E-07 42.0 3.7 54 10-70 114-171 (292)
212 1vlm_A SAM-dependent methyltra 94.6 0.021 7.1E-07 40.6 2.9 54 8-70 85-138 (219)
213 2pjd_A Ribosomal RNA small sub 94.6 0.02 6.8E-07 44.0 2.9 76 8-97 246-322 (343)
214 2i62_A Nicotinamide N-methyltr 94.4 0.0065 2.2E-07 44.0 -0.2 59 9-70 136-197 (265)
215 1vbf_A 231AA long hypothetical 94.3 0.026 8.7E-07 40.2 2.8 50 8-72 117-166 (231)
216 1y8c_A S-adenosylmethionine-de 94.2 0.018 6E-07 41.1 1.7 56 8-70 85-141 (246)
217 3cc8_A Putative methyltransfer 94.1 0.024 8.1E-07 39.9 2.3 55 10-71 76-130 (230)
218 1jg1_A PIMT;, protein-L-isoasp 93.8 0.041 1.4E-06 39.6 3.1 52 7-73 140-191 (235)
219 2hwk_A Helicase NSP2; rossman 93.8 0.05 1.7E-06 41.8 3.6 88 25-119 204-298 (320)
220 2vdw_A Vaccinia virus capping 93.7 0.064 2.2E-06 40.6 4.2 44 24-71 126-169 (302)
221 3ggd_A SAM-dependent methyltra 93.7 0.041 1.4E-06 39.5 2.9 61 5-70 99-162 (245)
222 2ip2_A Probable phenazine-spec 93.5 0.071 2.4E-06 40.3 4.1 56 6-70 216-271 (334)
223 3i53_A O-methyltransferase; CO 93.5 0.068 2.3E-06 40.4 4.0 54 7-70 219-273 (332)
224 3lst_A CALO1 methyltransferase 93.2 0.15 5.1E-06 38.9 5.6 55 6-70 231-285 (348)
225 3gwz_A MMCR; methyltransferase 93.1 0.11 3.7E-06 40.1 4.7 56 6-70 251-306 (369)
226 2b9e_A NOL1/NOP2/SUN domain fa 93.1 0.25 8.6E-06 37.6 6.6 83 7-94 153-255 (309)
227 3gdh_A Trimethylguanosine synt 92.9 0.019 6.4E-07 41.3 0.0 54 7-70 127-180 (241)
228 3kr9_A SAM-dependent methyltra 92.5 0.17 5.8E-06 37.1 4.7 72 7-95 66-138 (225)
229 3trk_A Nonstructural polyprote 92.5 0.31 1.1E-05 37.1 6.2 62 26-99 210-285 (324)
230 1p91_A Ribosomal RNA large sub 92.4 0.087 3E-06 38.3 3.0 49 7-71 130-178 (269)
231 4gua_A Non-structural polyprot 92.3 0.35 1.2E-05 40.4 6.7 64 25-100 219-296 (670)
232 3mq2_A 16S rRNA methyltransfer 92.3 0.091 3.1E-06 37.0 3.0 58 7-70 81-139 (218)
233 3ege_A Putative methyltransfer 92.2 0.12 4E-06 37.7 3.5 54 7-70 76-129 (261)
234 2qe6_A Uncharacterized protein 92.2 0.5 1.7E-05 35.1 7.0 60 6-70 127-195 (274)
235 1wy7_A Hypothetical protein PH 92.1 0.77 2.6E-05 31.7 7.7 68 8-91 98-165 (207)
236 3dp7_A SAM-dependent methyltra 92.1 0.067 2.3E-06 41.2 2.2 57 7-70 229-286 (363)
237 3b3j_A Histone-arginine methyl 91.8 0.032 1.1E-06 45.2 0.0 56 7-70 207-262 (480)
238 4gqb_A Protein arginine N-meth 91.7 0.052 1.8E-06 45.7 1.3 56 6-69 410-465 (637)
239 2avn_A Ubiquinone/menaquinone 91.5 0.064 2.2E-06 39.0 1.4 53 11-71 100-152 (260)
240 3mcz_A O-methyltransferase; ad 91.5 0.055 1.9E-06 41.2 1.1 57 7-70 229-286 (352)
241 2g72_A Phenylethanolamine N-me 91.5 0.035 1.2E-06 41.1 -0.0 90 9-101 152-257 (289)
242 2okc_A Type I restriction enzy 91.3 0.12 4.2E-06 41.0 3.0 59 8-69 237-305 (445)
243 1qzz_A RDMB, aclacinomycin-10- 91.1 0.13 4.3E-06 39.4 2.8 55 7-70 232-286 (374)
244 3lec_A NADB-rossmann superfami 91.1 0.26 8.8E-06 36.3 4.4 70 7-93 72-142 (230)
245 3gnl_A Uncharacterized protein 91.0 0.27 9.3E-06 36.5 4.5 70 7-93 72-142 (244)
246 1tw3_A COMT, carminomycin 4-O- 91.0 0.097 3.3E-06 39.9 2.0 55 7-70 233-287 (360)
247 4a6d_A Hydroxyindole O-methylt 90.6 0.29 9.8E-06 37.6 4.4 64 51-120 263-348 (353)
248 3p2e_A 16S rRNA methylase; met 90.6 0.025 8.5E-07 41.0 -1.6 60 7-69 78-137 (225)
249 2r3s_A Uncharacterized protein 90.4 0.084 2.9E-06 39.7 1.2 55 7-70 215-270 (335)
250 3ua3_A Protein arginine N-meth 90.4 0.31 1.1E-05 41.7 4.7 58 6-69 471-532 (745)
251 2jjq_A Uncharacterized RNA met 90.2 0.36 1.2E-05 38.4 4.8 49 9-71 339-387 (425)
252 2ar0_A M.ecoki, type I restric 90.0 0.19 6.5E-06 41.2 3.1 61 8-69 243-310 (541)
253 1fp1_D Isoliquiritigenin 2'-O- 90.0 0.17 5.9E-06 38.9 2.7 54 7-70 252-305 (372)
254 2oyr_A UPF0341 protein YHIQ; a 90.0 0.2 6.9E-06 37.3 3.0 31 7-38 145-175 (258)
255 3bkx_A SAM-dependent methyltra 89.9 0.34 1.2E-05 35.1 4.1 55 7-70 101-158 (275)
256 2km1_A Protein DRE2; yeast, an 89.7 0.37 1.3E-05 32.8 3.9 41 24-69 56-96 (136)
257 3bt7_A TRNA (uracil-5-)-methyl 89.5 0.2 6.7E-06 38.8 2.7 55 7-74 261-329 (369)
258 4e2x_A TCAB9; kijanose, tetron 89.3 0.18 6.1E-06 39.3 2.3 39 25-70 169-207 (416)
259 1ne2_A Hypothetical protein TA 89.1 0.54 1.8E-05 32.5 4.6 50 8-69 96-145 (200)
260 3hp7_A Hemolysin, putative; st 89.0 0.39 1.3E-05 36.5 4.0 34 26-69 150-183 (291)
261 1af7_A Chemotaxis receptor met 88.9 0.21 7.1E-06 37.5 2.4 56 8-70 195-251 (274)
262 2h00_A Methyltransferase 10 do 88.8 0.068 2.3E-06 38.7 -0.4 29 7-35 116-148 (254)
263 3bzb_A Uncharacterized protein 88.4 0.88 3E-05 33.6 5.6 55 7-69 139-203 (281)
264 1u2z_A Histone-lysine N-methyl 88.3 0.23 7.8E-06 39.8 2.4 55 7-70 301-358 (433)
265 3p9c_A Caffeic acid O-methyltr 88.0 0.48 1.6E-05 36.5 3.9 20 51-70 278-297 (364)
266 3reo_A (ISO)eugenol O-methyltr 87.6 0.44 1.5E-05 36.7 3.6 20 51-70 280-299 (368)
267 3tm4_A TRNA (guanine N2-)-meth 86.9 1.3 4.4E-05 34.3 5.9 52 7-61 268-321 (373)
268 3uwp_A Histone-lysine N-methyl 86.0 0.26 8.9E-06 39.7 1.5 57 6-70 231-287 (438)
269 3iv6_A Putative Zn-dependent a 85.3 0.9 3.1E-05 33.8 4.1 41 25-71 108-148 (261)
270 1x19_A CRTF-related protein; m 84.9 0.93 3.2E-05 34.5 4.1 55 7-70 240-294 (359)
271 1fp2_A Isoflavone O-methyltran 84.8 0.81 2.8E-05 34.8 3.7 53 7-70 231-287 (352)
272 1uwv_A 23S rRNA (uracil-5-)-me 84.8 1.2 4.2E-05 35.1 4.9 53 7-70 334-388 (433)
273 3khk_A Type I restriction-modi 84.2 0.44 1.5E-05 39.2 2.1 84 9-93 312-419 (544)
274 3ldg_A Putative uncharacterize 83.5 1.7 5.8E-05 34.0 5.1 59 7-71 283-343 (384)
275 1zg3_A Isoflavanone 4'-O-methy 80.7 1.2 4.3E-05 33.8 3.3 54 7-70 236-292 (358)
276 3htx_A HEN1; HEN1, small RNA m 79.8 1.6 5.5E-05 38.3 4.0 53 6-69 777-832 (950)
277 3kto_A Response regulator rece 79.3 5.7 0.00019 25.0 5.8 52 12-69 35-86 (136)
278 3lkd_A Type I restriction-modi 78.8 4.3 0.00015 33.3 6.1 86 7-93 276-381 (542)
279 2r6z_A UPF0341 protein in RSP 78.0 0.69 2.4E-05 34.2 1.1 31 7-37 139-171 (258)
280 3eod_A Protein HNR; response r 77.4 5.4 0.00018 24.7 5.2 49 13-69 37-85 (130)
281 3k0b_A Predicted N6-adenine-sp 76.7 1.8 6.2E-05 33.9 3.2 59 7-71 290-350 (393)
282 1qkk_A DCTD, C4-dicarboxylate 75.7 12 0.0004 24.0 6.7 50 12-69 32-81 (155)
283 3opn_A Putative hemolysin; str 75.5 7.7 0.00026 27.8 6.2 34 27-70 103-136 (232)
284 4e7p_A Response regulator; DNA 74.7 7.4 0.00025 24.9 5.4 50 12-69 51-100 (150)
285 3jte_A Response regulator rece 73.2 5.9 0.0002 25.0 4.6 45 16-69 39-83 (143)
286 3hv2_A Response regulator/HD d 73.1 11 0.00036 24.2 5.9 49 13-69 44-92 (153)
287 3i42_A Response regulator rece 71.8 4.3 0.00015 25.1 3.6 40 13-60 33-72 (127)
288 3ilh_A Two component response 71.7 13 0.00045 23.2 6.0 27 26-60 59-85 (146)
289 3lua_A Response regulator rece 71.5 16 0.00054 22.8 7.5 51 12-69 34-87 (140)
290 3giw_A Protein of unknown func 71.5 6.8 0.00023 29.5 5.1 39 51-89 180-218 (277)
291 3grc_A Sensor protein, kinase; 71.1 5.3 0.00018 25.1 4.0 39 13-59 36-74 (140)
292 3kht_A Response regulator; PSI 71.1 7.5 0.00026 24.5 4.7 40 12-59 36-75 (144)
293 2qxy_A Response regulator; reg 71.1 6.7 0.00023 24.6 4.5 48 13-69 34-81 (142)
294 3cu5_A Two component transcrip 70.6 9.1 0.00031 24.2 5.1 45 12-65 34-78 (141)
295 3rqi_A Response regulator prot 70.3 13 0.00044 24.8 6.1 50 12-69 36-85 (184)
296 3cz5_A Two-component response 70.0 10 0.00035 24.2 5.2 55 7-69 29-85 (153)
297 2a14_A Indolethylamine N-methy 69.9 1.5 5.1E-05 31.8 1.1 57 11-70 138-196 (263)
298 3ldu_A Putative methylase; str 69.8 2.3 7.8E-05 33.2 2.2 59 7-71 284-344 (385)
299 3snk_A Response regulator CHEY 69.3 11 0.00039 23.4 5.3 50 12-69 44-93 (135)
300 2b4a_A BH3024; flavodoxin-like 68.7 10 0.00034 23.7 4.9 50 12-69 44-94 (138)
301 3to5_A CHEY homolog; alpha(5)b 68.3 2.2 7.5E-05 28.2 1.6 39 13-59 43-81 (134)
302 2rjn_A Response regulator rece 68.3 11 0.00039 24.0 5.2 41 13-61 37-77 (154)
303 3gl9_A Response regulator; bet 68.0 6.1 0.00021 24.4 3.7 41 12-60 31-71 (122)
304 3ll7_A Putative methyltransfer 67.8 0.68 2.3E-05 36.8 -1.2 31 7-37 143-173 (410)
305 3hdg_A Uncharacterized protein 66.7 14 0.00047 22.9 5.3 48 12-68 36-83 (137)
306 1dbw_A Transcriptional regulat 66.4 13 0.00046 22.7 5.1 49 12-69 32-81 (126)
307 3b5i_A S-adenosyl-L-methionine 66.1 4.8 0.00017 31.5 3.4 60 11-71 133-225 (374)
308 3s1s_A Restriction endonucleas 66.1 22 0.00075 31.1 7.6 44 50-93 444-489 (878)
309 2qr3_A Two-component system re 65.9 8.4 0.00029 24.0 4.1 54 13-69 33-86 (140)
310 2efj_A 3,7-dimethylxanthine me 65.8 9.9 0.00034 29.9 5.2 19 53-71 207-225 (384)
311 1m6e_X S-adenosyl-L-methionnin 65.6 9.1 0.00031 29.8 4.9 60 10-70 121-208 (359)
312 3gt7_A Sensor protein; structu 65.5 14 0.00048 23.7 5.2 40 13-60 37-76 (154)
313 1yio_A Response regulatory pro 65.0 18 0.00061 24.4 5.9 50 12-69 33-82 (208)
314 4auk_A Ribosomal RNA large sub 64.6 14 0.00048 29.0 5.8 31 5-37 250-280 (375)
315 3kcn_A Adenylate cyclase homol 63.9 11 0.00039 24.0 4.5 41 13-61 33-74 (151)
316 2pl1_A Transcriptional regulat 63.8 10 0.00036 22.8 4.2 49 13-69 30-78 (121)
317 3b2n_A Uncharacterized protein 63.4 7.3 0.00025 24.3 3.4 44 13-65 35-78 (133)
318 3f6p_A Transcriptional regulat 63.4 9.5 0.00032 23.3 3.9 48 13-69 32-79 (120)
319 3a10_A Response regulator; pho 63.3 11 0.00038 22.6 4.2 49 13-69 31-79 (116)
320 1dz3_A Stage 0 sporulation pro 63.3 9 0.00031 23.7 3.8 50 8-65 27-78 (130)
321 3cg4_A Response regulator rece 62.7 9.5 0.00033 23.8 3.9 26 26-59 50-75 (142)
322 2rdm_A Response regulator rece 62.4 14 0.00049 22.6 4.7 50 13-69 35-85 (132)
323 3nhm_A Response regulator; pro 61.9 11 0.00037 23.2 4.0 40 13-60 33-72 (133)
324 3eqz_A Response regulator; str 61.4 25 0.00085 21.4 6.3 41 12-61 32-72 (135)
325 3iek_A Ribonuclease TTHA0252; 61.0 15 0.00051 28.8 5.5 47 26-73 178-224 (431)
326 3heb_A Response regulator rece 60.8 17 0.00059 23.0 5.0 37 25-69 57-95 (152)
327 2jk1_A HUPR, hydrogenase trans 60.8 11 0.00038 23.6 3.9 45 12-65 29-73 (139)
328 1xhf_A DYE resistance, aerobic 60.1 12 0.00042 22.6 4.0 40 13-60 33-72 (123)
329 2r25_B Osmosensing histidine p 60.0 11 0.00037 23.6 3.8 50 12-69 32-87 (133)
330 3p8z_A Mtase, non-structural p 60.0 34 0.0011 25.6 6.8 81 6-97 126-210 (267)
331 3f6c_A Positive transcription 59.5 14 0.00047 22.8 4.2 41 15-67 37-77 (134)
332 3crn_A Response regulator rece 59.4 11 0.00039 23.4 3.8 42 12-61 32-73 (132)
333 3cnb_A DNA-binding response re 59.4 10 0.00035 23.6 3.6 40 13-60 40-79 (143)
334 3hzh_A Chemotaxis response reg 58.8 9.7 0.00033 24.6 3.5 50 12-69 66-117 (157)
335 1zgz_A Torcad operon transcrip 58.6 12 0.0004 22.7 3.7 48 13-69 32-79 (122)
336 2lpm_A Two-component response 58.3 4.9 0.00017 26.2 1.9 38 14-59 40-77 (123)
337 3cfy_A Putative LUXO repressor 58.2 9.5 0.00032 24.0 3.3 41 12-60 33-73 (137)
338 2zay_A Response regulator rece 58.1 8.8 0.0003 24.2 3.1 38 14-59 39-76 (147)
339 1yub_A Ermam, rRNA methyltrans 58.0 1.9 6.6E-05 31.0 -0.2 58 6-70 74-144 (245)
340 3lkz_A Non-structural protein 57.9 38 0.0013 26.0 7.0 67 25-97 158-228 (321)
341 3t6k_A Response regulator rece 57.8 6.7 0.00023 24.7 2.5 41 12-60 33-73 (136)
342 1jbe_A Chemotaxis protein CHEY 57.8 21 0.00072 21.7 4.9 40 12-59 34-73 (128)
343 1k68_A Phytochrome response re 57.1 20 0.0007 21.9 4.7 28 26-61 54-81 (140)
344 3lte_A Response regulator; str 57.1 9 0.00031 23.6 3.0 50 12-69 35-85 (132)
345 3eul_A Possible nitrate/nitrit 56.7 9.2 0.00031 24.4 3.1 49 13-69 47-95 (152)
346 2jba_A Phosphate regulon trans 55.6 27 0.00091 21.1 5.1 41 12-60 31-71 (127)
347 1mvo_A PHOP response regulator 55.4 12 0.00041 23.1 3.4 49 13-69 33-81 (136)
348 4dad_A Putative pilus assembly 54.3 17 0.00059 22.8 4.1 49 13-69 51-101 (146)
349 1srr_A SPO0F, sporulation resp 54.2 13 0.00043 22.7 3.3 46 13-67 33-78 (124)
350 3rht_A (gatase1)-like protein; 54.2 12 0.00042 27.7 3.7 39 26-72 49-87 (259)
351 3v97_A Ribosomal RNA large sub 53.9 13 0.00045 31.3 4.2 60 7-69 283-345 (703)
352 1zq9_A Probable dimethyladenos 53.6 7.8 0.00027 28.6 2.5 26 7-36 77-102 (285)
353 3c97_A Signal transduction his 52.8 10 0.00035 23.8 2.7 40 13-60 40-79 (140)
354 3m6m_D Sensory/regulatory prot 52.8 9.2 0.00032 24.3 2.5 39 13-59 44-82 (143)
355 3hdv_A Response regulator; PSI 52.4 17 0.00057 22.5 3.7 35 27-69 52-87 (136)
356 1tmy_A CHEY protein, TMY; chem 52.0 14 0.00047 22.3 3.2 49 12-69 32-81 (120)
357 3h5i_A Response regulator/sens 51.9 26 0.00088 21.8 4.6 49 13-69 35-84 (140)
358 2a9o_A Response regulator; ess 51.4 15 0.00052 22.0 3.3 49 12-69 30-78 (120)
359 2qv0_A Protein MRKE; structura 51.3 14 0.00047 23.1 3.2 48 13-69 41-89 (143)
360 2qsj_A DNA-binding response re 50.6 18 0.00061 22.9 3.7 45 12-65 34-79 (154)
361 1ys7_A Transcriptional regulat 50.4 19 0.00064 24.7 4.0 50 12-69 36-85 (233)
362 1p6q_A CHEY2; chemotaxis, sign 49.2 37 0.0013 20.5 5.0 39 14-60 38-76 (129)
363 1kgs_A DRRD, DNA binding respo 49.2 20 0.0007 24.3 4.0 50 12-69 31-80 (225)
364 3r0j_A Possible two component 48.9 16 0.00053 25.7 3.4 49 13-69 53-101 (250)
365 1k66_A Phytochrome response re 48.9 19 0.00064 22.4 3.6 28 26-61 61-88 (149)
366 3c3m_A Response regulator rece 48.8 11 0.00039 23.5 2.5 40 13-60 33-72 (138)
367 3cgx_A Putative nucleotide-dip 48.5 57 0.0019 23.4 6.5 47 63-115 103-149 (242)
368 1p2f_A Response regulator; DRR 48.3 53 0.0018 22.2 6.1 48 12-69 30-77 (220)
369 3cg0_A Response regulator rece 48.2 23 0.00079 21.8 3.9 49 13-69 40-88 (140)
370 2qzj_A Two-component response 47.8 11 0.00037 23.7 2.2 49 12-69 33-81 (136)
371 3kyj_B CHEY6 protein, putative 47.3 12 0.0004 23.7 2.4 53 8-69 38-93 (145)
372 1a04_A Nitrate/nitrite respons 47.2 16 0.00054 24.8 3.2 53 9-69 31-85 (215)
373 2qvg_A Two component response 46.2 27 0.00092 21.6 4.0 28 26-61 58-85 (143)
374 3t8y_A CHEB, chemotaxis respon 45.2 18 0.00061 23.5 3.1 48 13-69 57-104 (164)
375 3n0r_A Response regulator; sig 43.7 7.8 0.00027 28.6 1.1 31 8-38 184-216 (286)
376 2gkg_A Response regulator homo 43.6 15 0.00053 22.1 2.4 50 13-69 35-86 (127)
377 2j48_A Two-component sensor ki 43.4 20 0.00068 21.0 2.9 41 13-61 31-71 (119)
378 3n53_A Response regulator rece 43.3 11 0.00039 23.5 1.8 41 13-61 32-72 (140)
379 3soz_A ORF 245 protein, cytopl 43.2 6.2 0.00021 29.2 0.5 45 26-73 69-120 (248)
380 1i3c_A Response regulator RCP1 42.3 34 0.0011 21.6 4.0 27 26-60 60-86 (149)
381 2ayx_A Sensor kinase protein R 42.0 18 0.00062 25.7 2.9 48 14-69 160-207 (254)
382 1s8n_A Putative antiterminator 41.7 22 0.00075 23.9 3.2 49 12-69 43-91 (205)
383 4e5v_A Putative THUA-like prot 40.0 55 0.0019 24.2 5.3 36 26-70 57-92 (281)
384 3q9s_A DNA-binding response re 39.4 43 0.0015 23.6 4.6 39 13-59 67-105 (249)
385 2oqr_A Sensory transduction pr 39.2 26 0.00089 23.9 3.3 49 12-69 33-81 (230)
386 3dmp_A Uracil phosphoribosyltr 38.1 39 0.0013 24.2 4.1 57 28-102 130-191 (217)
387 3mm4_A Histidine kinase homolo 38.0 24 0.00083 24.1 2.9 27 26-60 118-144 (206)
388 3klo_A Transcriptional regulat 37.8 53 0.0018 22.4 4.8 55 7-69 31-89 (225)
389 3h1g_A Chemotaxis protein CHEY 37.8 58 0.002 19.8 4.6 41 12-60 35-76 (129)
390 1mb3_A Cell division response 36.9 16 0.00053 22.1 1.6 40 13-60 31-70 (124)
391 3eq2_A Probable two-component 36.7 29 0.001 26.2 3.5 40 13-60 35-74 (394)
392 1wg8_A Predicted S-adenosylmet 36.3 28 0.00097 26.2 3.2 19 51-69 213-231 (285)
393 3ufb_A Type I restriction-modi 35.2 40 0.0014 27.3 4.2 83 9-92 282-384 (530)
394 3tka_A Ribosomal RNA small sub 34.5 31 0.0011 26.8 3.2 20 51-70 254-273 (347)
395 1m6y_A S-adenosyl-methyltransf 34.1 39 0.0013 25.3 3.7 29 7-35 75-106 (301)
396 1dc7_A NTRC, nitrogen regulati 33.7 16 0.00056 21.9 1.3 26 13-38 33-58 (124)
397 3luf_A Two-component system re 32.1 39 0.0013 24.1 3.3 42 10-59 31-72 (259)
398 2i3b_A HCR-ntpase, human cance 32.0 27 0.00093 24.1 2.4 37 25-68 103-140 (189)
399 1j8m_F SRP54, signal recogniti 31.7 27 0.00094 26.0 2.5 38 26-69 179-219 (297)
400 3dm5_A SRP54, signal recogniti 31.5 36 0.0012 27.2 3.2 60 26-94 181-241 (443)
401 3c3w_A Two component transcrip 31.0 17 0.00057 25.2 1.1 47 13-68 33-79 (225)
402 4g3o_A E3 ubiquitin-protein li 30.2 40 0.0014 19.2 2.5 18 79-96 15-32 (58)
403 3af5_A Putative uncharacterize 30.0 62 0.0021 26.8 4.6 46 26-71 384-430 (651)
404 3cwo_X Beta/alpha-barrel prote 29.7 51 0.0018 22.3 3.5 43 16-69 17-59 (237)
405 4ej6_A Putative zinc-binding d 29.2 56 0.0019 24.7 3.9 20 51-70 264-283 (370)
406 3dxo_A Uncharacterized snoal-l 29.2 65 0.0022 20.0 3.7 46 54-100 25-70 (121)
407 1zh2_A KDP operon transcriptio 28.7 29 0.00099 20.6 1.9 48 13-69 31-78 (121)
408 2x9q_A Cyclodipeptide syntheta 28.6 86 0.0029 23.7 4.7 55 47-101 62-119 (289)
409 3oqi_A YVMC, putative uncharac 28.5 87 0.003 23.2 4.7 48 54-101 19-68 (257)
410 2gwr_A DNA-binding response re 28.3 69 0.0024 22.0 4.1 35 26-69 48-82 (238)
411 3kl4_A SRP54, signal recogniti 28.2 64 0.0022 25.6 4.2 63 26-97 178-243 (433)
412 3p2y_A Alanine dehydrogenase/p 28.2 72 0.0025 24.9 4.4 36 26-68 264-299 (381)
413 3sy8_A ROCR; TIM barrel phosph 28.0 52 0.0018 25.1 3.6 49 12-69 33-82 (400)
414 1ny5_A Transcriptional regulat 27.8 53 0.0018 25.1 3.6 41 13-61 30-70 (387)
415 1dqu_A Isocitrate lyase; beta 27.5 1E+02 0.0036 25.3 5.4 38 68-105 391-428 (538)
416 1g3q_A MIND ATPase, cell divis 26.7 31 0.0011 23.8 2.0 18 18-36 103-120 (237)
417 3oqv_A ALBC; rossman fold, cyc 26.6 76 0.0026 23.4 4.1 52 51-102 16-69 (247)
418 3uko_A Alcohol dehydrogenase c 26.3 82 0.0028 23.7 4.4 20 51-70 274-294 (378)
419 2i7t_A Cleavage and polyadenyl 26.1 1.7E+02 0.0057 22.7 6.3 47 26-73 196-242 (459)
420 1p0f_A NADP-dependent alcohol 26.0 84 0.0029 23.5 4.4 20 51-70 272-292 (373)
421 3la6_A Tyrosine-protein kinase 25.8 83 0.0028 23.1 4.2 53 25-91 199-252 (286)
422 2zpa_A Uncharacterized protein 25.7 67 0.0023 27.1 4.0 36 26-71 71-106 (671)
423 4dvj_A Putative zinc-dependent 25.6 1.1E+02 0.0036 23.0 4.9 20 51-70 250-269 (363)
424 3on3_A Keto/oxoacid ferredoxin 25.4 40 0.0014 23.2 2.3 22 50-71 78-99 (183)
425 1g5t_A COB(I)alamin adenosyltr 25.3 34 0.0012 24.2 1.9 43 24-69 117-159 (196)
426 3gru_A Dimethyladenosine trans 25.2 25 0.00085 26.3 1.2 28 6-35 95-122 (295)
427 3k9g_A PF-32 protein; ssgcid, 25.0 29 0.00099 24.6 1.5 18 18-36 136-153 (267)
428 3kkg_A Putative snoal-like pol 24.7 80 0.0027 19.9 3.6 44 54-97 30-73 (146)
429 3dzd_A Transcriptional regulat 24.7 28 0.00095 26.6 1.4 42 12-61 29-70 (368)
430 2ejs_A Autocrine motility fact 24.6 47 0.0016 18.9 2.1 18 79-96 11-28 (58)
431 2cw6_A Hydroxymethylglutaryl-C 24.6 1.2E+02 0.0041 22.3 5.0 76 16-97 126-203 (298)
432 2ekf_A Ancient ubiquitous prot 24.5 46 0.0016 19.2 2.0 17 80-96 12-28 (61)
433 1f8f_A Benzyl alcohol dehydrog 23.5 50 0.0017 24.8 2.7 20 51-70 269-288 (371)
434 2ph1_A Nucleotide-binding prot 23.5 37 0.0013 24.2 1.9 11 26-36 127-137 (262)
435 2fzw_A Alcohol dehydrogenase c 23.4 1E+02 0.0034 23.0 4.4 20 51-70 271-291 (373)
436 3u0b_A Oxidoreductase, short c 22.9 94 0.0032 24.4 4.3 74 25-101 80-162 (454)
437 2oze_A ORF delta'; para, walke 22.2 25 0.00086 25.4 0.7 17 19-36 147-163 (298)
438 3gqv_A Enoyl reductase; medium 21.9 99 0.0034 23.2 4.1 20 51-70 242-262 (371)
439 2xr1_A Cleavage and polyadenyl 21.7 1.2E+02 0.0041 25.0 4.8 48 26-73 372-420 (640)
440 2jhf_A Alcohol dehydrogenase E 21.6 1.1E+02 0.0039 22.8 4.4 20 51-70 272-292 (374)
441 1ydo_A HMG-COA lyase; TIM-barr 21.4 1E+02 0.0036 23.0 4.1 76 15-96 126-203 (307)
442 1hru_A YRDC gene product; prot 21.1 49 0.0017 22.9 2.0 26 50-75 6-31 (188)
443 3bre_A Probable two-component 21.1 55 0.0019 24.0 2.5 44 8-59 43-87 (358)
444 4dzz_A Plasmid partitioning pr 21.0 23 0.00078 23.8 0.2 12 25-36 73-84 (206)
445 1e3i_A Alcohol dehydrogenase, 20.9 89 0.0031 23.4 3.6 20 51-70 276-296 (376)
446 3pdi_B Nitrogenase MOFE cofact 20.8 85 0.0029 24.9 3.6 79 27-107 59-140 (458)
447 3zq4_A Ribonuclease J 1, RNAse 20.5 3.1E+02 0.011 22.1 7.0 61 26-91 187-248 (555)
448 1cdo_A Alcohol dehydrogenase; 20.1 97 0.0033 23.2 3.7 20 51-70 273-293 (374)
No 1
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=100.00 E-value=1.6e-33 Score=217.73 Aligned_cols=114 Identities=24% Similarity=0.443 Sum_probs=109.4
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+++|||++++++||++||++ ++++||+||+|++|| .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus 134 ~~~dpRv~v~~~Dg~~~l~~-~~~~yDvIi~D~~dp---~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~ 209 (294)
T 3o4f_A 134 SYDDPRFKLVIDDGVNFVNQ-TSQTFDVIISDCTDP---IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAI 209 (294)
T ss_dssp GGGCTTEEEEESCTTTTTSC-SSCCEEEEEESCCCC---CCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHH
T ss_pred ccCCCcEEEEechHHHHHhh-ccccCCEEEEeCCCc---CCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHH
Confidence 58999999999999999998 889999999999999 78999999999999999999999999999999999989999
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+.|.+|.+.+|+||+|.|+|++||+..+
T Consensus 210 ~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~~ 247 (294)
T 3o4f_A 210 DSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA 247 (294)
T ss_dssp HHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCTT
T ss_pred HHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCCc
Confidence 99999999999999999999999999999999998754
No 2
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.93 E-value=6.4e-26 Score=175.10 Aligned_cols=114 Identities=24% Similarity=0.443 Sum_probs=95.6
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+++++|++++++||++|++. .+++||+||+|+++| .+++..|++.+||+.|+++|+|||++++|+++++.+.+.+.
T Consensus 134 ~~~~~rv~~~~~D~~~~l~~-~~~~fDvIi~D~~~p---~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~~~~~ 209 (294)
T 3adn_A 134 SYDDPRFKLVIDDGVNFVNQ-TSQTFDVIISDCTDP---IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAI 209 (294)
T ss_dssp CTTCTTCCEECSCSCC---C-CCCCEEEEEECC-------------CCHHHHHHHHHTEEEEEEEEEEEEECSSCCHHHH
T ss_pred cccCCceEEEEChHHHHHhh-cCCCccEEEECCCCc---cCcchhccHHHHHHHHHHhcCCCCEEEEecCCcccchHHHH
Confidence 47899999999999999988 678999999999999 68888999999999999999999999999988888888899
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+++..|...+|+||+|.|+|++||+..+
T Consensus 210 ~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~~ 247 (294)
T 3adn_A 210 DSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA 247 (294)
T ss_dssp HHHHHHHHHCSEEEEEEEECTTSSSSEEEEEEEESCTT
T ss_pred HHHHHHHHHCCCeEEEEEEecccCCCceEEEEEeCCcc
Confidence 99999999999999999999999999999999999764
No 3
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=99.92 E-value=2.3e-25 Score=177.13 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCC---CCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHH
Q psy4593 6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRV---VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDC 80 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~---~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~ 80 (132)
++|++++++||++||++. ..++||+||+|++|+... .+++..||++|||+.|+++|+|||++++|+++++. .+.
T Consensus 261 ~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~-~~~ 339 (381)
T 3c6k_A 261 GDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL-TEA 339 (381)
T ss_dssp ETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC-HHH
T ss_pred ccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-hhH
Confidence 467999999999999752 346899999999985311 24567899999999999999999999999988876 456
Q ss_pred HHHHHHHHHhhCCCceE--eEEeccCcCCCceeEEEeecCCCc
Q psy4593 81 VGNTLQHCASVFPRVAY--GATCVPTYPSGQIGFVLGSQLLKQ 121 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~~--~~~~~p~~~~~~~~f~~as~~~~~ 121 (132)
+..+.++++++|+.|.+ |.+.+|+||+ .|+|++|||..++
T Consensus 340 ~~~i~~tl~~vF~~v~~~~~~~~VPSy~~-~W~F~~aSK~~~P 381 (381)
T 3c6k_A 340 LSLYEEQLGRLYCPVEFSKEIVCVPSYLE-LWVFYTVWKKAKP 381 (381)
T ss_dssp HHHHHHHHTTSSSCEEEEEEEECCGGGSS-CEEEEEEEECCC-
T ss_pred HHHHHHHHHHhCCcceEeeEEEEecCCCC-ceeeeEEECCCCC
Confidence 88999999999999865 4578999986 7999999998763
No 4
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.92 E-value=1.8e-24 Score=165.18 Aligned_cols=114 Identities=24% Similarity=0.447 Sum_probs=105.8
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
.++++|++++++||++|+.. .+++||+|++|+++| .+++..|++.+||+.++++|+|||+++++.++++.+.+.+.
T Consensus 125 ~~~~~rv~v~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~ 200 (275)
T 1iy9_A 125 KLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELIT 200 (275)
T ss_dssp TTTSTTEEEEESCSHHHHHT-CCSCEEEEEESCSSC---CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHH
T ss_pred ccCCCceEEEECcHHHHHhh-CCCCeeEEEECCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHH
Confidence 35789999999999999987 678999999999998 57888999999999999999999999999988888888899
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+++..|.+.+|+||+|.|+|++||+..+
T Consensus 201 ~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~~ 238 (275)
T 1iy9_A 201 NVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD 238 (275)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCC
T ss_pred HHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCCC
Confidence 99999999999999999999999999999999998643
No 5
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.90 E-value=1.2e-23 Score=161.18 Aligned_cols=111 Identities=29% Similarity=0.609 Sum_probs=103.9
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++|+.+++.. .+++||+|++|+++| .+++..|++.+||+.++++|+|||++++++++++.+.+.+..
T Consensus 129 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~ 204 (283)
T 2i7c_A 129 YEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKN 204 (283)
T ss_dssp GGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCT---TTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred cCCCcEEEEECChHHHHHh-CCCCceEEEEcCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHH
Confidence 4589999999999999977 578999999999998 677889999999999999999999999999898888888999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
+.++++++|+++.+|...+|+|++|.|||++||+.
T Consensus 205 ~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 205 MIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 239 (283)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence 99999999999999999999999999999999987
No 6
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.89 E-value=3.8e-23 Score=160.90 Aligned_cols=115 Identities=30% Similarity=0.589 Sum_probs=94.0
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++|+.+++.. .+++||+|++|+++| .+++..|++.+||+.++++|+|||+++++.+++|.+.+.+..
T Consensus 159 ~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 234 (314)
T 2b2c_A 159 FSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDP---VGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAH 234 (314)
T ss_dssp GGCTTEEEECSCHHHHHHH-CTTCEEEEEECCC----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred cCCCCEEEEEChHHHHHHh-cCCCceEEEEcCCCC---CCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHH
Confidence 3589999999999999977 678999999999998 677788999999999999999999999999899888888999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcc
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQH 122 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~ 122 (132)
+.++++++|+++.++.+.+|+|++|.|||++||+.+...
T Consensus 235 ~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~~~~ 273 (314)
T 2b2c_A 235 LVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRD 273 (314)
T ss_dssp HHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCC
T ss_pred HHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCCccc
Confidence 999999999999999999999999999999999885433
No 7
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.89 E-value=6.2e-23 Score=158.92 Aligned_cols=117 Identities=37% Similarity=0.685 Sum_probs=96.7
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++||.+++.. .+++||+|++|+++| .+++..+++.+||+.++++|+|||+++++.+++|.+....+.
T Consensus 146 ~~~~rv~v~~~Da~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 221 (304)
T 2o07_A 146 YSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDP---MGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKE 221 (304)
T ss_dssp GGCTTEEEEESCHHHHHHT-CSSCEEEEEEECC--------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHH
T ss_pred cCCCcEEEEECcHHHHHhh-CCCCceEEEECCCCC---CCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHH
Confidence 4689999999999999987 678999999999998 577778999999999999999999999998888888888899
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN 124 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~ 124 (132)
+.++++++|+++.++.+.+|+|++|.|||++||+.+...+.
T Consensus 222 ~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~~~~~~~ 262 (304)
T 2o07_A 222 MRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQ 262 (304)
T ss_dssp HHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCSS
T ss_pred HHHHHHHhCCCceeEEEEeccccCcceEEEEEeCCcccccc
Confidence 99999999999999999999999999999999988553433
No 8
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.88 E-value=1.5e-22 Score=156.07 Aligned_cols=114 Identities=16% Similarity=0.330 Sum_probs=97.0
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++|+.+++.. .+++||+|++|+++|+ .+++..|++.+||+.++++|+|||+++++.++++.+.+.+..
T Consensus 141 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~~--~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 217 (296)
T 1inl_A 141 FDDPRAEIVIANGAEYVRK-FKNEFDVIIIDSTDPT--AGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKL 217 (296)
T ss_dssp GGCTTEEEEESCHHHHGGG-CSSCEEEEEEEC------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHH
T ss_pred cCCCceEEEECcHHHHHhh-CCCCceEEEEcCCCcc--cCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHH
Confidence 4579999999999999987 5678999999999885 567788999999999999999999999999888888888999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.++++++|+++..|.+.+|+||+|.|+|++||+..+
T Consensus 218 ~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~~ 254 (296)
T 1inl_A 218 AYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGID 254 (296)
T ss_dssp HHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCC
T ss_pred HHHHHHHHCCceEEEEeecCccCCCceEEEEecCCCC
Confidence 9999999999999999999999999999999998644
No 9
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.87 E-value=3.7e-22 Score=155.54 Aligned_cols=113 Identities=28% Similarity=0.586 Sum_probs=104.0
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++|+.+++.. .+++||+|++|+++| .+++..+++.+||+.++++|+|||+++++.++++.+.+.+..
T Consensus 167 ~~~~~v~~~~~D~~~~l~~-~~~~fDvIi~d~~~p---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 242 (321)
T 2pt6_A 167 YEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKN 242 (321)
T ss_dssp GGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCS---SSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred cCCCcEEEEEccHHHHHhh-cCCCceEEEECCcCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHH
Confidence 4579999999999999976 567899999999998 677788999999999999999999999998888888888999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.++++++|+++..|...+|+|++|.|+|++||+..+
T Consensus 243 ~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~~ 279 (321)
T 2pt6_A 243 MIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDT 279 (321)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESSTT
T ss_pred HHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCCC
Confidence 9999999999999999999999999999999998754
No 10
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.86 E-value=1.9e-21 Score=150.28 Aligned_cols=114 Identities=26% Similarity=0.499 Sum_probs=96.6
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
+.++|++++++|+.+++....+++||+|++|.++| .++...|++.+||+.++++|+|||+++++.++++.+......
T Consensus 146 ~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 222 (304)
T 3bwc_A 146 LADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP---AGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEK 222 (304)
T ss_dssp GGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred cCCCcEEEEECcHHHHHHhccCCceeEEEECCCCc---cccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHH
Confidence 46899999999999998753357899999999998 678889999999999999999999999998888888888999
Q ss_pred HHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 84 TLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 84 ~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.++++++ |+.+..+...+|+||+|.|+|++||+.++
T Consensus 223 ~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~~~ 260 (304)
T 3bwc_A 223 MSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKKAG 260 (304)
T ss_dssp HHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESSSS
T ss_pred HHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCCcc
Confidence 99999999 99999999999999999999999999754
No 11
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=99.86 E-value=9.9e-22 Score=155.56 Aligned_cols=113 Identities=14% Similarity=0.205 Sum_probs=90.9
Q ss_pred CCCCC---CcEEEEccHHHHhcCC--CCCeecEEEEcCCC-CCCCCC-CCcccccHHHHHHH----HHhcCCCcEEEEec
Q psy4593 3 SYRGY---PVLSARQDCTDFMSGP--VKNMCGLVVSGAAG-PGRVVC-PAESLFQASYFELM----SRALRPGGIVCSQA 71 (132)
Q Consensus 3 ~~~d~---rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~d-p~~~~~-~~~~L~t~eF~~~~----~~~L~p~Gil~~~~ 71 (132)
+++|| |++++++||++||++. .+++||+||+|+++ | .+ .+..|++.+||+.| +++|+|||++++|+
T Consensus 238 ~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P---~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 238 VLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVP---ISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSC---CCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcc---cCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 35665 8999999999999852 35789999999999 7 43 23469999999999 99999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceE--eEEeccCcCCCceeEEEeecCCC
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAY--GATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~--~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+++.. .+....+.+.+++.|+.|.. |.+.+|+|++ .|+|..|+|..+
T Consensus 315 ~s~~~-~e~~~~~~~~l~~~F~~v~~~~~~~~vPsy~~-~w~f~~~~k~~~ 363 (364)
T 2qfm_A 315 NCVNL-TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLE-LWVFYTVWKKAK 363 (364)
T ss_dssp EETTC-HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSS-CEEEEEEEECCC
T ss_pred CCcch-HHHHHHHHHHHHHhCCceEEeeEeeecCCchh-heEeEEeecccC
Confidence 88765 33344344459999999998 9999999987 999999998753
No 12
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.85 E-value=1.5e-21 Score=151.55 Aligned_cols=115 Identities=17% Similarity=0.311 Sum_probs=99.4
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-CChHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-YSLDCVG 82 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-~~~~~~~ 82 (132)
++++|++++++|+.+++.. .+++||+|++|++++....+++..|++.+||+.++++|+|||++++|.++++ .+.+.++
T Consensus 129 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 207 (314)
T 1uir_A 129 FDDPRAVLVIDDARAYLER-TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHP 207 (314)
T ss_dssp GGCTTEEEEESCHHHHHHH-CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHH
T ss_pred ccCCceEEEEchHHHHHHh-cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHH
Confidence 5689999999999999976 5788999999999982001667889999999999999999999999987777 5667889
Q ss_pred HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.++++++|+++.++.+.+|+| +|.|+|++||+..+
T Consensus 208 ~~~~~l~~~F~~v~~~~~~vP~~-~g~~~~~~as~~~~ 244 (314)
T 1uir_A 208 VVHRTVREAFRYVRSYKNHIPGF-FLNFGFLLASDAFD 244 (314)
T ss_dssp HHHHHHHTTCSEEEEEEEEEGGG-TEEEEEEEEESSSC
T ss_pred HHHHHHHHHCCceEEEEEecCCC-CCeEEEEEEECCCC
Confidence 99999999999999999999999 77999999998743
No 13
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.84 E-value=7.1e-21 Score=145.46 Aligned_cols=108 Identities=23% Similarity=0.372 Sum_probs=96.1
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
.++|++++++||.+++.. +++||+|++|+++| .+++..+++.+||+.++++|+|||+++++.++++.+.+.++.+
T Consensus 132 ~~~~v~~~~~D~~~~l~~--~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~ 206 (281)
T 1mjf_A 132 KHEKAKLTIGDGFEFIKN--NRGFDVIIADSTDP---VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISA 206 (281)
T ss_dssp CCSSEEEEESCHHHHHHH--CCCEEEEEEECCCC---C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHH
T ss_pred CCCcEEEEECchHHHhcc--cCCeeEEEECCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHH
Confidence 578999999999999876 56899999999998 5778899999999999999999999999988888888889999
Q ss_pred HHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
.++++++|+++..|...+|+| +|.|+|++||+.
T Consensus 207 ~~~l~~~f~~v~~~~~~vP~~-~g~~~~~~as~~ 239 (281)
T 1mjf_A 207 YKEMKKVFDRVYYYSFPVIGY-ASPWAFLVGVKG 239 (281)
T ss_dssp HHHHHHHCSEEEEEEECCTTS-SSSEEEEEEEES
T ss_pred HHHHHHHCCceEEEEEecCCC-CceEEEEEeeCC
Confidence 999999999999999999999 779999999997
No 14
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.84 E-value=2.2e-20 Score=146.44 Aligned_cols=112 Identities=38% Similarity=0.733 Sum_probs=100.1
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++|+.+++....+++||+|++|+++| .+++..+++.+||+.++++|+|||+++++++++|.+...+..
T Consensus 171 l~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 247 (334)
T 1xj5_A 171 YEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIED 247 (334)
T ss_dssp GGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCT---TSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHhccCCCccEEEECCCCc---cCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHH
Confidence 46799999999999998763357899999999998 566677899999999999999999999998899988888899
Q ss_pred HHHHHHhhCCC-ceEeEEeccCcCCCceeEEEeecC
Q psy4593 84 TLQHCASVFPR-VAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 84 ~~~~l~~vF~~-v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
+.++++++|+. +.++.+.+|+|+++.|||++||+.
T Consensus 248 ~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 248 IVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE 283 (334)
T ss_dssp HHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred HHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence 99999999995 566678999999999999999986
No 15
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.80 E-value=1.2e-19 Score=141.46 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=93.7
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
.++|++++++||++|++...+++||+||+|++++ ..++.+|++.+||+.|+++|+|||++++|..+. .....++.+
T Consensus 137 ~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~---~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~-~~~~~~~~~ 212 (317)
T 3gjy_A 137 RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG---AITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH-SDLRGAKSE 212 (317)
T ss_dssp CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT---SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC-TTCHHHHHH
T ss_pred CCCceEEEECcHHHHHhhccCCCCCEEEECCCCc---cccchhhhHHHHHHHHHHhcCCCcEEEEEecCC-cchHHHHHH
Confidence 4789999999999999873467999999999998 577889999999999999999999999997553 234678899
Q ss_pred HHHHHhhCCCceEeEEeccCcCCCceeE--EEeecCCC
Q psy4593 85 LQHCASVFPRVAYGATCVPTYPSGQIGF--VLGSQLLK 120 (132)
Q Consensus 85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f--~~as~~~~ 120 (132)
+++|+++|++|.++....|.++ ..||. ++||+.+-
T Consensus 213 ~~tL~~vF~~v~~~~~~~~~~g-~~~gN~Vl~As~~pl 249 (317)
T 3gjy_A 213 LAGMMEVFEHVAVIADPPMLKG-RRYGNIILMGSDTEF 249 (317)
T ss_dssp HHHHHHHCSEEEEEECHHHHTT-SSCEEEEEEEESSCC
T ss_pred HHHHHHHCCceEEEEecCCCCC-CcCceEEEEEECCCC
Confidence 9999999999999877777664 24444 88998764
No 16
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.76 E-value=9e-19 Score=133.04 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
++++|++++++||++|+ ++||+|++|+.|| . .||+.|+++|+|||+++++.++++.+...+..
T Consensus 121 ~~~~rv~~~~~D~~~~~-----~~fD~Ii~d~~dp---~---------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~ 183 (262)
T 2cmg_A 121 KNNKNFTHAKQLLDLDI-----KKYDLIFCLQEPD---I---------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQN 183 (262)
T ss_dssp HTCTTEEEESSGGGSCC-----CCEEEEEESSCCC---H---------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHH
T ss_pred cCCCeEEEEechHHHHH-----hhCCEEEECCCCh---H---------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHH
Confidence 46899999999999987 5799999998887 2 29999999999999999998888877778999
Q ss_pred HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
+.++++++|+++..+...+|+ +|.|+|++||+..+
T Consensus 184 ~~~~l~~~F~~~~~~~~~vP~--~g~~~~~~as~~~~ 218 (262)
T 2cmg_A 184 ALKNMGGVFSVAMPFVAPLRI--LSNKGYIYASFKTH 218 (262)
T ss_dssp HHHHHHTTCSEEEEECCTTCT--TCCEEEEEEESSCC
T ss_pred HHHHHHHhCCceEEEEEccCC--CcccEEEEeeCCCC
Confidence 999999999999999999999 67999999999754
No 17
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=98.77 E-value=4.1e-08 Score=76.07 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=72.6
Q ss_pred CCCCc--EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 5 RGYPV--LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 5 ~d~rv--~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
+++++ .++++|+++.|.+....++|+|+.|.|.|. -.+.|+|.++|+.++++|+|||++++++.. .
T Consensus 162 ~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~----kNPeLWs~e~f~~l~~~~~pgg~laTYtaa--------g 229 (308)
T 3vyw_A 162 EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPY----KNPELWTLDFLSLIKERIDEKGYWVSYSSS--------L 229 (308)
T ss_dssp ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTT----TSGGGGSHHHHHHHHTTEEEEEEEEESCCC--------H
T ss_pred cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcc----cCcccCCHHHHHHHHHHhCCCcEEEEEeCc--------H
Confidence 44555 578899999998844458999999999993 344799999999999999999999998644 3
Q ss_pred HHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 83 NTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 83 ~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
.+.+.|+++ |. |. .+|-++ +-..++.|+...+
T Consensus 230 ~VRR~L~~aGF~-V~----k~~G~g-~KReml~A~~~~~ 262 (308)
T 3vyw_A 230 SVRKSLLTLGFK-VG----SSREIG-RKRKGTVASLKAP 262 (308)
T ss_dssp HHHHHHHHTTCE-EE----EEECC----CEEEEEESSSC
T ss_pred HHHHHHHHCCCE-EE----ecCCCC-CCCceeEEecCCC
Confidence 455677776 54 33 356664 4567888887543
No 18
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.73 E-value=2.1e-08 Score=75.77 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCcEEEEccHHHHhcCCCC---CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVK---NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~---~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
.+++++.+|+++.+..... ..||+|++|.+.| .. ...|++.+||+.++++|+|||++++++.. ..
T Consensus 150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp---~~-~p~lw~~~~l~~l~~~L~pGG~l~tysaa--------~~ 217 (257)
T 2qy6_A 150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP---AK-NPDMWTQNLFNAMARLARPGGTLATFTSA--------GF 217 (257)
T ss_dssp EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT---TT-CGGGCCHHHHHHHHHHEEEEEEEEESCCB--------HH
T ss_pred eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc---cc-ChhhcCHHHHHHHHHHcCCCcEEEEEeCC--------HH
Confidence 3567999999999987322 2799999999988 22 33799999999999999999999987533 23
Q ss_pred HHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593 84 TLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 84 ~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~ 119 (132)
+.+.|+++ |. |. .+|.++ +-..++.|.+..
T Consensus 218 vrr~L~~aGF~-v~----~~~g~~-~kr~m~~a~~~~ 248 (257)
T 2qy6_A 218 VRRGLQEAGFT-MQ----KRKGFG-RKREMLCGVMEQ 248 (257)
T ss_dssp HHHHHHHHTEE-EE----EECCST-TCCCEEEEEEC-
T ss_pred HHHHHHHCCCE-EE----eCCCCC-CCCceEEEEecC
Confidence 45566665 54 22 356664 355667776654
No 19
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.39 E-value=3.5e-06 Score=62.39 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-------CCh
Q psy4593 7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-------YSL 78 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-------~~~ 78 (132)
++++++.+|+.+++.... .++||+|++|...+ -..++++.+.+.|+|||++++...... ...
T Consensus 115 ~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~ 184 (248)
T 3tfw_A 115 QRVTLREGPALQSLESLGECPAFDLIFIDADKP----------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD 184 (248)
T ss_dssp TTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG----------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCC
T ss_pred CcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH----------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccc
Confidence 589999999999987732 24899999987422 136799999999999999997531111 011
Q ss_pred ---HHHHHHHHHHHhhCCCceEeEEeccCcC-CCceeEEEeecCCCccccCC
Q psy4593 79 ---DCVGNTLQHCASVFPRVAYGATCVPTYP-SGQIGFVLGSQLLKQHANSH 126 (132)
Q Consensus 79 ---~~~~~~~~~l~~vF~~v~~~~~~~p~~~-~~~~~f~~as~~~~~~~~~~ 126 (132)
..++.+.+.+.+ -+.+. .+.+|..+ .+.=||.+|.+....+++..
T Consensus 185 ~~~~~~~~~~~~l~~-~~~~~--~~~l~~~g~~~~DG~~i~~~~~~~~~~~~ 233 (248)
T 3tfw_A 185 ERVQGVRQFIEMMGA-EPRLT--ATALQTVGTKGWDGFTLAWVNAAENLYFQ 233 (248)
T ss_dssp HHHHHHHHHHHHHHH-CTTEE--EEEEEECSTTCSEEEEEEEECCC------
T ss_pred hHHHHHHHHHHHHhh-CCCEE--EEEeecCCCCCCCeeEEEEEeCCcchHhH
Confidence 123444444433 23333 22332222 13478999988877665544
No 20
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.31 E-value=2e-06 Score=63.97 Aligned_cols=98 Identities=8% Similarity=0.072 Sum_probs=63.9
Q ss_pred CCCcEEEEccHHHHhcCCC-----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCCCC
Q psy4593 6 GYPVLSARQDCTDFMSGPV-----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTLWY 76 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~~~ 76 (132)
+++++++.+|+.+++.... .++||+|++|.... ...++++.+.+.|+|||++++.. +....
T Consensus 130 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~ 199 (247)
T 1sui_A 130 DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD----------NYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVA 199 (247)
T ss_dssp GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST----------THHHHHHHHHHHBCTTCCEEEECTTGGGGGGC
T ss_pred CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH----------HHHHHHHHHHHhCCCCeEEEEecCCcCCcccC
Confidence 3589999999999876421 47899999996422 13789999999999999998742 21111
Q ss_pred C---------hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593 77 S---------LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 77 ~---------~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
. ....+.+.+..+..+.+..+..+.+|.+. |++++.+
T Consensus 200 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~d----G~~l~~k 245 (247)
T 1sui_A 200 PPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGD----GITICRR 245 (247)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTT----CEEEECB
T ss_pred CCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCC----ccEEEEE
Confidence 1 11223344444455666666667788753 3666654
No 21
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.30 E-value=9.7e-07 Score=65.07 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=64.1
Q ss_pred CCCcEEEEccHHHHhcCC-----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCCCC
Q psy4593 6 GYPVLSARQDCTDFMSGP-----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTLWY 76 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~~~ 76 (132)
++|++++.+|+.+++... ..++||+|++|...+ -..++++.+.+.|+|||+++... +....
T Consensus 121 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~----------~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~ 190 (237)
T 3c3y_A 121 EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP----------NYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQ 190 (237)
T ss_dssp GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECTTGGGGGGS
T ss_pred CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH----------HHHHHHHHHHHhcCCCeEEEEecCCcCCccCC
Confidence 357999999999987642 147899999996322 14789999999999999999742 11111
Q ss_pred C--------hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593 77 S--------LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 77 ~--------~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
. ....+.+.+..+..+.+..+..+.+|.+. |++++.+
T Consensus 191 ~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~d----G~~~~~~ 235 (237)
T 3c3y_A 191 PESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGD----GITFCRR 235 (237)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTT----CEEEEEE
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC----ceEEEEE
Confidence 1 11233333444445555666677788752 4666654
No 22
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.28 E-value=7.2e-06 Score=59.97 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=64.0
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC-------CC-CC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT-------LW-YS 77 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~-------~~-~~ 77 (132)
++|++++.+|+.+++....+++||+|++|..-+ -..++++.+.+.|+|||++++.... +. .+
T Consensus 108 ~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~ 177 (221)
T 3dr5_A 108 PSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPM----------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD 177 (221)
T ss_dssp GGGEEEECSCHHHHGGGSCTTCEEEEEECCCTT----------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC
T ss_pred cCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHH----------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC
Confidence 368999999999999773368999999996432 1257999999999999999984211 11 11
Q ss_pred hH--HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCc
Q psy4593 78 LD--CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQ 121 (132)
Q Consensus 78 ~~--~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~ 121 (132)
.. .++++.+.+++. +.+. .+.+|.. -|++++.+..+.
T Consensus 178 ~~~~~~~~~~~~l~~~-~~~~--~~~lp~g----dGl~~~~~~~~~ 216 (221)
T 3dr5_A 178 RDTQAARDADEYIRSI-EGAH--VARLPLG----AGLTVVTKALEH 216 (221)
T ss_dssp HHHHHHHHHHHHHTTC-TTEE--EEEESST----TCEEEEEECCCC
T ss_pred hHHHHHHHHHHHHhhC-CCee--EEEeecc----chHHHHHHHHHh
Confidence 11 224444444332 4444 3456653 246677666553
No 23
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.23 E-value=2.7e-06 Score=61.00 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCC-------hH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYS-------LD 79 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~-------~~ 79 (132)
++++++.+|+.+++.. .++ ||+|++|.... ...++++.+++.|+|||++++... .|.. ..
T Consensus 108 ~~v~~~~~d~~~~~~~-~~~-fD~v~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~-~~~g~~~~~~~~~ 174 (210)
T 3c3p_A 108 DRVELQVGDPLGIAAG-QRD-IDILFMDCDVF----------NGADVLERMNRCLAKNALLIAVNA-LRRGSVAESHEDP 174 (210)
T ss_dssp GGEEEEESCHHHHHTT-CCS-EEEEEEETTTS----------CHHHHHHHHGGGEEEEEEEEEESS-SSCC---------
T ss_pred ceEEEEEecHHHHhcc-CCC-CCEEEEcCChh----------hhHHHHHHHHHhcCCCeEEEEECc-cccCcccCcccch
Confidence 5799999999999876 456 99999995322 247899999999999999997421 1111 11
Q ss_pred HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 80 CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 80 ~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
..+.+.+-++..+.+..+....+|.. .||.++.+.
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~p~~----~G~~~~~~~ 209 (210)
T 3c3p_A 175 ETAALREFNHHLSRRRDFFTTIVPVG----NGVLLGYRL 209 (210)
T ss_dssp ---CCCHHHHHHTTCTTEEEEEECST----TCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEecC----CceEEEEeC
Confidence 12222333344455555656667753 467777653
No 24
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.12 E-value=1e-05 Score=59.82 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCC----
Q psy4593 7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTL---- 74 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~---- 74 (132)
++++++.+|+.+++... ..++||+|++|...+ -..++++.+.+.|+|||++++.. +..
T Consensus 112 ~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~ 181 (242)
T 3r3h_A 112 HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT----------NYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPN 181 (242)
T ss_dssp TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG----------GHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTT
T ss_pred CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH----------HhHHHHHHHHHhcCCCeEEEEECCccCCcccCcc
Confidence 68999999999988652 047899999997422 13578999999999999999742 110
Q ss_pred CCC--hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC-CccccC
Q psy4593 75 WYS--LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL-KQHANS 125 (132)
Q Consensus 75 ~~~--~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~-~~~~~~ 125 (132)
... ...++.+.+.+.+. +.+. .+.+|.. -|++++.+.. .+++.+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~-~~~~--~~~lp~~----dG~~~~~k~~~~~~~~~ 228 (242)
T 3r3h_A 182 DTSGQTREIKKLNQVIKND-SRVF--VSLLAIA----DGMFLVQPIAENLYFQS 228 (242)
T ss_dssp CCCHHHHHHHHHHHHHHTC-CSEE--EEEESSS----SCEEEEEEC--------
T ss_pred ccChHHHHHHHHHHHHhhC-CCEE--EEEEEcc----CceEEEEEcCCCcchhh
Confidence 011 12244455555443 4443 3445652 4577776643 444444
No 25
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.08 E-value=1.2e-05 Score=58.74 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+++. . .+++||+|++|...+ -..++++.+++.|+|||++++.
T Consensus 122 ~~v~~~~~d~~~~~~~~-~~~~fD~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 122 NQVRIIEGNALEQFENV-NDKVYDMIFIDAAKA----------QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TTEEEEESCGGGCHHHH-TTSCEEEEEEETTSS----------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcEEEEECCHHHHHHhh-ccCCccEEEEcCcHH----------HHHHHHHHHHHhcCCCeEEEEe
Confidence 589999999999876 5 357899999996433 1467999999999999999983
No 26
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.02 E-value=4.2e-06 Score=61.57 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=47.4
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc-cccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES-LFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~-L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..+++++.+|+.+.+....+.+||.|+.|.+.. .....+ .....|++.++|+|||||+++.
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~---~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 107 THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL---SEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC---BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred CCceEEEeehHHhhcccccccCCceEEEeeeec---ccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 467889999999988765678999999998754 222223 3346788999999999999986
No 27
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.00 E-value=2e-05 Score=56.75 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred CCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+++... ...+||+|++|...+ ...++++.+++.|+|||++++.
T Consensus 110 ~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~----------~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 110 DRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ----------NNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp TTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred CcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence 57999999999876542 125799999997522 2368999999999999999975
No 28
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.88 E-value=3.2e-05 Score=56.51 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=61.2
Q ss_pred CCcEEEEccHHHHhcCC--CC--CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-------
Q psy4593 7 YPVLSARQDCTDFMSGP--VK--NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW------- 75 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~--~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~------- 75 (132)
++++++.+|+.+++... .+ ++||+|++|...+ -..++++.+.+.|+|||++++......
T Consensus 124 ~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~ 193 (232)
T 3cbg_A 124 EKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR----------NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVD 193 (232)
T ss_dssp GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG----------GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSS
T ss_pred CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcc
Confidence 57999999998876542 12 6899999996422 136799999999999999997421110
Q ss_pred CChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593 76 YSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 76 ~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
...+..+.+.+-.+....+..+..+.+|... |+.++.+
T Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d----G~~~~~~ 231 (232)
T 3cbg_A 194 PQEAQTQVLQQFNRDLAQDERVRISVIPLGD----GMTLALK 231 (232)
T ss_dssp CCSHHHHHHHHHHHHHTTCTTEEEEEECSBT----CEEEEEE
T ss_pred cCChHHHHHHHHHHHHhhCCCeEEEEEEcCC----eEEEEEe
Confidence 0122333333444444555555556677652 3555543
No 29
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.86 E-value=3e-05 Score=55.86 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=42.7
Q ss_pred CCcEEEEccHHHHhcCCC----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPV----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.+.... .++||+|++|.... -..++++.+.+.|+|||++++.
T Consensus 121 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~----------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 121 HKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE----------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST----------THHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 689999999998865421 16899999986422 1368999999999999999984
No 30
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.84 E-value=0.00011 Score=57.07 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc-----cHHHHHHHHHhcCCCcEEEE-ecCCCCCC
Q psy4593 6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF-----QASYFELMSRALRPGGIVCS-QAGTLWYS 77 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~-----t~eF~~~~~~~L~p~Gil~~-~~~~~~~~ 77 (132)
+.+++++.+|+.+++... ..++||+||+|.+-- +......++ -.++++.+.+.|+|||++++ ...+....
T Consensus 202 ~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~--~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~ 279 (332)
T 2igt_A 202 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKF--GRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRAS 279 (332)
T ss_dssp TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSE--EECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSC
T ss_pred ccceEEEECcHHHHHHHHHhcCCCceEEEECCccc--cCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCC
Confidence 346999999999998531 146899999997421 011111111 25789999999999999655 33343334
Q ss_pred hHHHHHHHH-HHHhhCCCceEeEEeccCcC
Q psy4593 78 LDCVGNTLQ-HCASVFPRVAYGATCVPTYP 106 (132)
Q Consensus 78 ~~~~~~~~~-~l~~vF~~v~~~~~~~p~~~ 106 (132)
...+..+++ .+++.-..+.......|...
T Consensus 280 ~~~~~~~l~~a~~~~g~~v~~~e~~~p~~~ 309 (332)
T 2igt_A 280 FYSMHELMRETMRGAGGVVASGELVIREAG 309 (332)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 444554444 33333334444555566553
No 31
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.84 E-value=3.4e-05 Score=56.31 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCcEEEEccHHHHhcCC-------------C-C-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP-------------V-K-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-------------~-~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+++... . + ++||+|++|...+ -..++++.+++.|+|||++++..
T Consensus 112 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 112 NKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE----------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 46899999999876531 0 2 6899999985322 12588999999999999999853
Q ss_pred ----CC---CCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCc
Q psy4593 72 ----GT---LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQ 121 (132)
Q Consensus 72 ----~~---~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~ 121 (132)
+. +.........+.+-......+..+....+|..+| +.++.+..+.
T Consensus 182 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g----~~~~~~~~~~ 234 (239)
T 2hnk_A 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADG----VSLVRKRLEH 234 (239)
T ss_dssp SSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTC----EEEEEECCCC
T ss_pred cccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCc----eEeeeehhhc
Confidence 11 1111122222222222233333344556777643 6677666553
No 32
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.80 E-value=4.5e-05 Score=55.55 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=57.6
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
++++++.+|+.+.+.. ..+++||.|++...+|+.-. .....+...+|++.+++.|+|||++.+.+.. ......+
T Consensus 84 ~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~----~~~~~~~ 159 (218)
T 3dxy_A 84 SNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW----EPYAEHM 159 (218)
T ss_dssp SSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC----HHHHHHH
T ss_pred CcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHH
Confidence 4699999999998653 25679999999887875211 1223567789999999999999999886422 2334445
Q ss_pred HHHHHhh
Q psy4593 85 LQHCASV 91 (132)
Q Consensus 85 ~~~l~~v 91 (132)
.+.+.+.
T Consensus 160 ~~~~~~~ 166 (218)
T 3dxy_A 160 LEVMSSI 166 (218)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 5555543
No 33
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.79 E-value=7.2e-05 Score=51.79 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=57.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
+|++++.+|+.+.+. .++||+|+.+..-. . ..-...++++.+++.|+|||.+++...+. .....+.+
T Consensus 102 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~-----~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~ 168 (194)
T 1dus_A 102 YDIRVVHSDLYENVK---DRKYNKIITNPPIR-----A-GKEVLHRIIEEGKELLKDNGEIWVVIQTK----QGAKSLAK 168 (194)
T ss_dssp SCEEEEECSTTTTCT---TSCEEEEEECCCST-----T-CHHHHHHHHHHHHHHEEEEEEEEEEEEST----HHHHHHHH
T ss_pred cceEEEECchhcccc---cCCceEEEECCCcc-----c-chhHHHHHHHHHHHHcCCCCEEEEEECCC----CChHHHHH
Confidence 369999999887543 46899999975211 1 01124689999999999999999864222 33456778
Q ss_pred HHHhhCCCceEeE
Q psy4593 87 HCASVFPRVAYGA 99 (132)
Q Consensus 87 ~l~~vF~~v~~~~ 99 (132)
.+++.|..+..+.
T Consensus 169 ~l~~~~~~~~~~~ 181 (194)
T 1dus_A 169 YMKDVFGNVETVT 181 (194)
T ss_dssp HHHHHHSCCEEEE
T ss_pred HHHHHhcceEEEe
Confidence 8888898888644
No 34
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=97.77 E-value=2.2e-05 Score=65.81 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=52.7
Q ss_pred CCcEEEEccHHHHhcCCC---CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPV---KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
-+++++++|+++.|.+.. ..++|+|++|.|.| .-...|++.++|+.+.++++|||.+++.+..
T Consensus 156 ~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p----~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~ 221 (676)
T 3ps9_A 156 VTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP----AKNPDMWTQNLFNAMARLARPGGTLATFTSA 221 (676)
T ss_dssp EEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG----GGCGGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred EEEEEecCCHHHHHHhcccccCCcccEEEECCCCC----cCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence 456789999999998742 46899999999998 2334799999999999999999999987533
No 35
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.74 E-value=0.00049 Score=50.18 Aligned_cols=99 Identities=8% Similarity=0.042 Sum_probs=64.5
Q ss_pred CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
++++++.+|+.++.... ..++||+|+++.... -.++++.+++.|+|||++++..+.. ..+....+.
T Consensus 120 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~g~~--~~~~~~~~~ 186 (240)
T 1xdz_A 120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR-----------LSVLSELCLPLVKKNGLFVALKAAS--AEEELNAGK 186 (240)
T ss_dssp SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC-----------HHHHHHHHGGGEEEEEEEEEEECC---CHHHHHHHH
T ss_pred CCEEEEeccHHHhcccccccCCccEEEEeccCC-----------HHHHHHHHHHhcCCCCEEEEEeCCC--chHHHHHHH
Confidence 36999999998875320 247899999876322 3789999999999999999864332 234455666
Q ss_pred HHHHhh-CCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593 86 QHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 86 ~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~ 119 (132)
+.+++. |.-+.......|.. .+.+.+++..+..
T Consensus 187 ~~l~~~g~~~~~~~~~~~~~~-~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 187 KAITTLGGELENIHSFKLPIE-ESDRNIMVIRKIK 220 (240)
T ss_dssp HHHHHTTEEEEEEEEEECTTT-CCEEEEEEEEECS
T ss_pred HHHHHcCCeEeEEEEEecCCC-CCceEEEEEEecC
Confidence 666654 54444433345543 3456667666543
No 36
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.73 E-value=0.00012 Score=52.36 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=57.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
++++++.+|+.++.....+++||+|+++..+|+... .-...+...++++.++++|+|||++++.+.. ......+.
T Consensus 91 ~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~ 166 (214)
T 1yzh_A 91 PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN----RGLFEYSL 166 (214)
T ss_dssp SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC----HHHHHHHH
T ss_pred CCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHHH
Confidence 589999999987443224568999999987774110 1112456789999999999999999986432 23445556
Q ss_pred HHHHhh-CCC
Q psy4593 86 QHCASV-FPR 94 (132)
Q Consensus 86 ~~l~~v-F~~ 94 (132)
+.+++. |..
T Consensus 167 ~~~~~~g~~~ 176 (214)
T 1yzh_A 167 VSFSQYGMKL 176 (214)
T ss_dssp HHHHHHTCEE
T ss_pred HHHHHCCCee
Confidence 666654 443
No 37
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=97.72 E-value=3.3e-05 Score=56.64 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=56.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
.+++++.+|+.+.+. +.+||+|++|..++ .++++.+++.|+|||.+++...+ ......+.+
T Consensus 145 ~~v~~~~~d~~~~~~---~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~ 205 (255)
T 3mb5_A 145 DRVTIKLKDIYEGIE---EENVDHVILDLPQP------------ERVVEHAAKALKPGGFFVAYTPC----SNQVMRLHE 205 (255)
T ss_dssp TTEEEECSCGGGCCC---CCSEEEEEECSSCG------------GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHHH
T ss_pred CceEEEECchhhccC---CCCcCEEEECCCCH------------HHHHHHHHHHcCCCCEEEEEECC----HHHHHHHHH
Confidence 469999999987643 46799999987655 46799999999999999986422 234566777
Q ss_pred HHHhh---CCCceEeEE
Q psy4593 87 HCASV---FPRVAYGAT 100 (132)
Q Consensus 87 ~l~~v---F~~v~~~~~ 100 (132)
.+++. |..+..+..
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 77765 887776543
No 38
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.72 E-value=4e-05 Score=64.42 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=51.6
Q ss_pred CcEEEEccHHHHhcCCC---CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 8 PVLSARQDCTDFMSGPV---KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+++++++|+++.|.+.. ..++|+|++|.|.|. -...+++.+||+.+.++++|||.++..+..
T Consensus 149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~----~np~~w~~~~~~~l~~~~~~g~~~~t~~~~ 213 (689)
T 3pvc_A 149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA----KNPDMWNEQLFNAMARMTRPGGTFSTFTAA 213 (689)
T ss_dssp EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC------CCTTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred EEEEEccCHHHHHhhcccccCCceeEEEECCCCCC----CChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence 56789999999998732 478999999999983 334699999999999999999999987533
No 39
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.67 E-value=0.00011 Score=52.76 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCcEEEEccHHHHhcCCCC----CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVK----NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~----~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+++..... ++||+|++|.... -..++++.+++.|+|||++++.
T Consensus 116 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 116 DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA----------NTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence 5799999999998754211 7899999887421 2367999999999999999874
No 40
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.60 E-value=5.6e-05 Score=54.92 Aligned_cols=77 Identities=17% Similarity=0.079 Sum_probs=54.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|..+.+. .++.||+|+.|..++ .++++.+.+.|+|||.+++...+ ......+.+
T Consensus 140 ~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~ 201 (248)
T 2yvl_A 140 KNVKFFNVDFKDAEV--PEGIFHAAFVDVREP------------WHYLEKVHKSLMEGAPVGFLLPT----ANQVIKLLE 201 (248)
T ss_dssp TTEEEECSCTTTSCC--CTTCBSEEEECSSCG------------GGGHHHHHHHBCTTCEEEEEESS----HHHHHHHHH
T ss_pred CcEEEEEcChhhccc--CCCcccEEEECCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence 678999999877541 235799999976544 35689999999999999986532 234556666
Q ss_pred HHHhhCCCceEeEEe
Q psy4593 87 HCASVFPRVAYGATC 101 (132)
Q Consensus 87 ~l~~vF~~v~~~~~~ 101 (132)
.+++.|..+..+...
T Consensus 202 ~l~~~f~~~~~~~~~ 216 (248)
T 2yvl_A 202 SIENYFGNLEVVEIL 216 (248)
T ss_dssp HSTTTEEEEEEEEEE
T ss_pred HHHhhCCcceEEEee
Confidence 666557666655443
No 41
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.59 E-value=0.00011 Score=53.05 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCcEEEEccHHHHhcCCCC----CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVK----NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~----~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++..... ++||+|++|..... ..-..++++.+ +.|+|||++++..
T Consensus 110 ~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~-------~~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 110 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR-------YLPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG-------HHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc-------chHHHHHHHhc-cccCCCeEEEEeC
Confidence 4799999999999876322 68999999964321 11123677777 9999999999853
No 42
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.58 E-value=0.00033 Score=51.75 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=53.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC-CCCCCc------------ccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-VVCPAE------------SLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~-~~~~~~------------~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
.|++++.+|+.++......++||+|++|.+=-.. ..+... ..--.++++.+++.|+|||.+++-.
T Consensus 99 ~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-- 176 (259)
T 3lpm_A 99 DQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH-- 176 (259)
T ss_dssp TTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred ccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE--
Confidence 4799999999998764346899999998531000 000000 0112579999999999999999732
Q ss_pred CCCChHHHHHHHHHHHhh-CCCce
Q psy4593 74 LWYSLDCVGNTLQHCASV-FPRVA 96 (132)
Q Consensus 74 ~~~~~~~~~~~~~~l~~v-F~~v~ 96 (132)
+. .....+.+.+++. |.-..
T Consensus 177 ~~---~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 177 RP---ERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CT---TTHHHHHHHHHHTTEEEEE
T ss_pred cH---HHHHHHHHHHHHCCCceEE
Confidence 11 2245566667664 44333
No 43
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.56 E-value=0.00013 Score=56.22 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc---c-------cccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE---S-------LFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~---~-------L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.|...+.+++.+|+++.|+...++++|+|++|.+=. ..... . -+-.+.++.+++.|+|||.++++.+
T Consensus 9 ~~~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~---~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 9 AYTTSNGSMYIGDSLELLESFPEESISLVMTSPPFA---LQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SEECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCS---SSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eeecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCC---CCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 366788999999999999875668999999997522 11100 0 1346778889999999999999865
Q ss_pred CC
Q psy4593 73 TL 74 (132)
Q Consensus 73 ~~ 74 (132)
..
T Consensus 86 d~ 87 (323)
T 1boo_A 86 GA 87 (323)
T ss_dssp CC
T ss_pred CE
Confidence 43
No 44
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.55 E-value=0.00028 Score=52.48 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCcEEEEccHHHHhc-----CCCCCeecEEEEcCCCCCCCCC----------CC---cccccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMS-----GPVKNMCGLVVSGAAGPGRVVC----------PA---ESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~-----~~~~~~yDvIi~D~~dp~~~~~----------~~---~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
.|++++.+|..+++. ...+++||+|+++..--. .. .+ ....-.++++.+++.|+|||.++
T Consensus 90 ~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~--~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 167 (260)
T 2ozv_A 90 ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYND--AGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLS 167 (260)
T ss_dssp GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcC--CCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence 369999999988743 113578999999843110 10 00 01224789999999999999998
Q ss_pred EecCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593 69 SQAGTLWYSLDCVGNTLQHCASVFPRVAYGA 99 (132)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~ 99 (132)
+-... .....+.+.+++.|..+.+..
T Consensus 168 ~~~~~-----~~~~~~~~~l~~~~~~~~i~~ 193 (260)
T 2ozv_A 168 LISRP-----QSVAEIIAACGSRFGGLEITL 193 (260)
T ss_dssp EEECG-----GGHHHHHHHHTTTEEEEEEEE
T ss_pred EEEcH-----HHHHHHHHHHHhcCCceEEEE
Confidence 74311 235567777877776665543
No 45
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.54 E-value=7.2e-05 Score=52.71 Aligned_cols=105 Identities=14% Similarity=-0.047 Sum_probs=57.4
Q ss_pred CcEEEEccHHHHhcC--CCCCeecEEEEcCCC-CCCCC-CCCcccc-----------------cHHHHHHHHHhcCCCcE
Q psy4593 8 PVLSARQDCTDFMSG--PVKNMCGLVVSGAAG-PGRVV-CPAESLF-----------------QASYFELMSRALRPGGI 66 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~--~~~~~yDvIi~D~~d-p~~~~-~~~~~L~-----------------t~eF~~~~~~~L~p~Gi 66 (132)
+++++.+|+.+.+.. ...++||+|+.|.+- +.... ....... -.++++.+++.|+|||+
T Consensus 80 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 80 VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 678888999987653 123789999998531 10000 0000100 17889999999999999
Q ss_pred -EEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593 67 -VCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 67 -l~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~ 119 (132)
+++.. .....+.+..+++.++..|..+... +.+.+ ..-++++.+..
T Consensus 160 l~~~~~--~~~~~~~~~~~l~~~~~gf~~~~~~----~~~~~-~~r~~~~~~~~ 206 (215)
T 4dzr_A 160 GVFLEV--GHNQADEVARLFAPWRERGFRVRKV----KDLRG-IDRVIAVTREP 206 (215)
T ss_dssp EEEEEC--TTSCHHHHHHHTGGGGGGTEECCEE----ECTTS-CEEEEEEEECC
T ss_pred EEEEEE--CCccHHHHHHHHHHhhcCCceEEEE----EecCC-CEEEEEEEEcC
Confidence 66543 2234444444444334557766653 33333 45566666543
No 46
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.54 E-value=6.6e-05 Score=54.62 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=43.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+.+.+....+++||+|++|.+... ......-.-..+++.+++.|+|||++++
T Consensus 108 ~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 108 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS--EETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB--GGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred CCeEEEecCHHHhhcccCCCceEEEEECCcccc--hhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 678999999999865435679999999865321 1111111123678999999999999985
No 47
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.49 E-value=0.00034 Score=55.13 Aligned_cols=81 Identities=7% Similarity=0.019 Sum_probs=51.0
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc--cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF--QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~--t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
+++++.+|+.+++... ...+||+|++|.+--........... -.++++.+.+.|+|||++++.+.+.....+.+..
T Consensus 264 ~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 343 (385)
T 2b78_A 264 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKK 343 (385)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHH
Confidence 8999999999988642 24589999999753100001111111 1346678899999999999876555555554444
Q ss_pred HHHHH
Q psy4593 84 TLQHC 88 (132)
Q Consensus 84 ~~~~l 88 (132)
+++..
T Consensus 344 ~i~~~ 348 (385)
T 2b78_A 344 QIEKG 348 (385)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 48
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=97.46 E-value=0.00067 Score=47.95 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+.+.. ..+||+|+.+.... ...++++.+++.|+|||.+++.... ......+.+
T Consensus 90 ~~v~~~~~d~~~~~~~--~~~~D~i~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~ 153 (204)
T 3e05_A 90 RNVTLVEAFAPEGLDD--LPDPDRVFIGGSGG----------MLEEIIDAVDRRLKSEGVIVLNAVT----LDTLTKAVE 153 (204)
T ss_dssp TTEEEEECCTTTTCTT--SCCCSEEEESCCTT----------CHHHHHHHHHHHCCTTCEEEEEECB----HHHHHHHHH
T ss_pred CcEEEEeCChhhhhhc--CCCCCEEEECCCCc----------CHHHHHHHHHHhcCCCeEEEEEecc----cccHHHHHH
Confidence 6799999998876654 36799999986422 2468999999999999999986422 234566667
Q ss_pred HHHhh-CCCceEe
Q psy4593 87 HCASV-FPRVAYG 98 (132)
Q Consensus 87 ~l~~v-F~~v~~~ 98 (132)
.+++. | .+...
T Consensus 154 ~l~~~g~-~~~~~ 165 (204)
T 3e05_A 154 FLEDHGY-MVEVA 165 (204)
T ss_dssp HHHHTTC-EEEEE
T ss_pred HHHHCCC-ceeEE
Confidence 77765 6 54443
No 49
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.45 E-value=0.0002 Score=48.47 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCcEEEEccHHHHh-----cC-CCCCeecEEEEcCCCCCCCCCCCccc-------ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFM-----SG-PVKNMCGLVVSGAAGPGRVVCPAESL-------FQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l-----~~-~~~~~yDvIi~D~~dp~~~~~~~~~L-------~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.+|..+.- .. ..+++||+|+.|..-.+ .+ .... ....+++.+++.|+|||.+++....
T Consensus 62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM--SG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC--CS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccc--cC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 67888999986641 11 13468999999865331 11 1000 0168999999999999999975311
Q ss_pred CCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 74 LWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 74 ~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
. .....+.+.+++.|..+...
T Consensus 139 ~----~~~~~~~~~~~~~~~~~~~~ 159 (180)
T 1ej0_A 139 G----EGFDEYLREIRSLFTKVKVR 159 (180)
T ss_dssp S----TTHHHHHHHHHHHEEEEEEE
T ss_pred C----CcHHHHHHHHHHhhhhEEee
Confidence 1 12456677777778877654
No 50
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.45 E-value=0.0017 Score=45.48 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++... .+++||+|+.|..- |.... .....-...++++.+.+.|+|||.+++.
T Consensus 74 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 74 DRVTLIKDGHQNMDKY-IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp GGEEEECSCGGGGGGT-CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEECCHHHHhhh-ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 5799999999887655 45799999998632 21000 0001112357999999999999999875
No 51
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.45 E-value=0.00039 Score=50.08 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=55.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
++++++.+|+.+......++.||.|++...+|+... .-...+...+|++.+++.|+|||.+++.+.+ ......+.
T Consensus 88 ~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~ 163 (213)
T 2fca_A 88 QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN----RGLFEYSL 163 (213)
T ss_dssp SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC----HHHHHHHH
T ss_pred CCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHH
Confidence 579999999987432123567999999887775111 1123466789999999999999999986422 23344555
Q ss_pred HHHHhh
Q psy4593 86 QHCASV 91 (132)
Q Consensus 86 ~~l~~v 91 (132)
+.+.+.
T Consensus 164 ~~~~~~ 169 (213)
T 2fca_A 164 KSFSEY 169 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 566554
No 52
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.44 E-value=0.00013 Score=54.81 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=53.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC--CCChHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGNT 84 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~--~~~~~~~~~~ 84 (132)
.+++++.+|+.+++. .++||+|++|.... ..++++.+.+.|+|||++++...++ .........+
T Consensus 175 ~~v~~~~~D~~~~~~---~~~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i 240 (278)
T 2frn_A 175 DRMSAYNMDNRDFPG---ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETF 240 (278)
T ss_dssp TTEEEECSCTTTCCC---CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHH
T ss_pred ceEEEEECCHHHhcc---cCCccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHH
Confidence 468899999988765 47899999985421 2678999999999999999864332 1223345666
Q ss_pred HHHHHhhCCCceE
Q psy4593 85 LQHCASVFPRVAY 97 (132)
Q Consensus 85 ~~~l~~vF~~v~~ 97 (132)
.+.+++..-.+..
T Consensus 241 ~~~~~~~G~~~~~ 253 (278)
T 2frn_A 241 KRITKEYGYDVEK 253 (278)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHcCCeeEE
Confidence 6666665444433
No 53
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.44 E-value=0.00037 Score=49.62 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=61.6
Q ss_pred CCcEEEEccHHHH---------hcCCCCCeecEEEEcCCCCCCCCCCC--ccc----ccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDF---------MSGPVKNMCGLVVSGAAGPGRVVCPA--ESL----FQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~---------l~~~~~~~yDvIi~D~~dp~~~~~~~--~~L----~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|..+. +.....++||+|++|..-.. .+.. ... .....++.+.+.|+|||.+++..
T Consensus 62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV--SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC--CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5789999996542 11001148999999975321 1110 000 12456788899999999999753
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
+ ..+....+.+.+++.|..|.... ...+.++..=.|++|...
T Consensus 140 ---~-~~~~~~~~~~~l~~~F~~v~~~k-P~asR~~s~E~y~v~~~~ 181 (191)
T 3dou_A 140 ---F-QGDMTNDFIAIWRKNFSSYKISK-PPASRGSSSEIYIMFFGF 181 (191)
T ss_dssp ---E-CSTHHHHHHHHHGGGEEEEEEEC-C------CCEEEEEEEEE
T ss_pred ---c-CCCCHHHHHHHHHHhcCEEEEEC-CCCccCCCceEEEEEeee
Confidence 1 22235678888999999888643 223333334456777554
No 54
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.42 E-value=0.001 Score=45.78 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|..+.+.. ..+||+|+.+.... . -.++++.+++.|+|||.+++...+ ......+.+
T Consensus 82 ~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~--------~--~~~~l~~~~~~l~~gG~l~~~~~~----~~~~~~~~~ 145 (192)
T 1l3i_A 82 DNVTLMEGDAPEALCK--IPDIDIAVVGGSGG--------E--LQEILRIIKDKLKPGGRIIVTAIL----LETKFEAME 145 (192)
T ss_dssp TTEEEEESCHHHHHTT--SCCEEEEEESCCTT--------C--HHHHHHHHHHTEEEEEEEEEEECB----HHHHHHHHH
T ss_pred cceEEEecCHHHhccc--CCCCCEEEECCchH--------H--HHHHHHHHHHhcCCCcEEEEEecC----cchHHHHHH
Confidence 6899999999987655 24899999875322 1 288999999999999999985422 334566777
Q ss_pred HHHhh-CCCceEe
Q psy4593 87 HCASV-FPRVAYG 98 (132)
Q Consensus 87 ~l~~v-F~~v~~~ 98 (132)
.+++. | .+...
T Consensus 146 ~l~~~g~-~~~~~ 157 (192)
T 1l3i_A 146 CLRDLGF-DVNIT 157 (192)
T ss_dssp HHHHTTC-CCEEE
T ss_pred HHHHCCC-ceEEE
Confidence 77766 7 55543
No 55
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.42 E-value=0.00012 Score=53.40 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CCCcEEEEccHHHH-hcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593 6 GYPVLSARQDCTDF-MSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84 (132)
Q Consensus 6 d~rv~v~~~Dg~~~-l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~ 84 (132)
.++++++.+|+.+. + .+++||+|++|..++ .++++.+++.|+|||.+++...+ ......+
T Consensus 147 ~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~ 207 (258)
T 2pwy_A 147 VENVRFHLGKLEEAEL---EEAAYDGVALDLMEP------------WKVLEKAALALKPDRFLVAYLPN----ITQVLEL 207 (258)
T ss_dssp CCCEEEEESCGGGCCC---CTTCEEEEEEESSCG------------GGGHHHHHHHEEEEEEEEEEESC----HHHHHHH
T ss_pred CCCEEEEECchhhcCC---CCCCcCEEEECCcCH------------HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHH
Confidence 46899999998875 3 346899999987554 36799999999999999986422 2345677
Q ss_pred HHHHHhh-CCCceEeE
Q psy4593 85 LQHCASV-FPRVAYGA 99 (132)
Q Consensus 85 ~~~l~~v-F~~v~~~~ 99 (132)
.+.+++. |..+..+.
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 7777764 66555443
No 56
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.41 E-value=0.00074 Score=52.94 Aligned_cols=87 Identities=10% Similarity=0.035 Sum_probs=56.3
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChHH
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLDC 80 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~ 80 (132)
+++++.+|+.+++... ...+||+|++|.+.-. ... ..+ .-.++++.+.+.|+|||++++.+.+.....+.
T Consensus 258 ~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~--~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 334 (382)
T 1wxx_A 258 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA--KGK-KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPL 334 (382)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC--CST-TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred CceEEECCHHHHHHHHHhcCCCeeEEEECCCCCC--CCh-hHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHH
Confidence 3899999999997641 2568999999974310 111 111 12568899999999999999876555555544
Q ss_pred HHHHH-HHHHhhCCCceE
Q psy4593 81 VGNTL-QHCASVFPRVAY 97 (132)
Q Consensus 81 ~~~~~-~~l~~vF~~v~~ 97 (132)
+..++ +.+.+.-..+..
T Consensus 335 ~~~~i~~~~~~~g~~~~~ 352 (382)
T 1wxx_A 335 FYAMVAEAAQDAHRLLRV 352 (382)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 44443 455555444444
No 57
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.38 E-value=0.00032 Score=49.11 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=44.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++....+++||+|+.|..-. .. .-...++++.+++ .|+|||++++..
T Consensus 93 ~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~-----~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 93 SGATLRRGAVAAVVAAGTTSPVDLVLADPPYN-----VD-SADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp SCEEEEESCHHHHHHHCCSSCCSEEEECCCTT-----SC-HHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred CceEEEEccHHHHHhhccCCCccEEEECCCCC-----cc-hhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 58999999999998652367999999985311 11 0124678889988 999999999864
No 58
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.37 E-value=0.00014 Score=55.76 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=48.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+.+....+++||+|++|..+|+ .+++.+++.|+|||.+++... .......+++
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~------------~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~ 230 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPH------------VTLPVFYPHLKHGGVCAVYVV----NITQVIELLD 230 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSSTT------------TTHHHHGGGEEEEEEEEEEES----SHHHHHHHHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCCCHH------------HHHHHHHHhcCCCcEEEEEeC----CHHHHHHHHH
Confidence 689999999987653323467999999987662 168999999999999998643 2345666677
Q ss_pred HHHhh
Q psy4593 87 HCASV 91 (132)
Q Consensus 87 ~l~~v 91 (132)
.+++.
T Consensus 231 ~l~~~ 235 (336)
T 2b25_A 231 GIRTC 235 (336)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
No 59
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.36 E-value=0.0006 Score=54.11 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=47.6
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-ccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
+++.+|+.+++.. ..++||+|++|.+. .... ..+ .-.++++.+.+.|+|||+++.-+.+.....+.+..
T Consensus 264 ~~~~~D~~~~l~~-~~~~fD~Ii~dpP~----f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~ 338 (393)
T 4dmg_A 264 DIRHGEALPTLRG-LEGPFHHVLLDPPT----LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLE 338 (393)
T ss_dssp EEEESCHHHHHHT-CCCCEEEEEECCCC----CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred cEEEccHHHHHHH-hcCCCCEEEECCCc----CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 5779999999977 34459999999642 1111 111 11478889999999999998765555555544444
Q ss_pred HH
Q psy4593 84 TL 85 (132)
Q Consensus 84 ~~ 85 (132)
++
T Consensus 339 ~v 340 (393)
T 4dmg_A 339 VA 340 (393)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 60
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.33 E-value=0.00044 Score=51.79 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=54.3
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCc-------------ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAE-------------SLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~-------------~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.++.... ..++||+|++|++-.. .+.-. .-...++++.+.+.|+|||.++..+
T Consensus 134 ~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~--~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 134 LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG--NIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCC--CcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 47999999999876420 1468999999964221 11100 0134789999999999999999866
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
++..... -..+++.+.+..++..+
T Consensus 212 cs~~~~e--ne~~v~~~l~~~~~~~~ 235 (274)
T 3ajd_A 212 CSMEVEE--NEEVIKYILQKRNDVEL 235 (274)
T ss_dssp SCCCTTS--SHHHHHHHHHHCSSEEE
T ss_pred CCCChHH--hHHHHHHHHHhCCCcEE
Confidence 5543221 13444555555565554
No 61
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.32 E-value=0.00043 Score=52.55 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CCCccc--------c---cHHHHHHHHHhcCCCcEEEEecC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CPAESL--------F---QASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~~~~L--------~---t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
-.+++++++|..++++...+++||+|+.|.+= ..... .....+ + -.+.++.+++.|+|||.+++..+
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 35678999999999987556899999999752 10000 000010 1 13466789999999999998764
Q ss_pred C
Q psy4593 73 T 73 (132)
Q Consensus 73 ~ 73 (132)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=97.29 E-value=0.00014 Score=54.36 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+++. +++||+|++|..++ .++++.+++.|+|||++++...+ ......+.+
T Consensus 162 ~~v~~~~~d~~~~~~---~~~fD~Vi~~~~~~------------~~~l~~~~~~LkpgG~l~i~~~~----~~~~~~~~~ 222 (275)
T 1yb2_A 162 GNVRTSRSDIADFIS---DQMYDAVIADIPDP------------WNHVQKIASMMKPGSVATFYLPN----FDQSEKTVL 222 (275)
T ss_dssp TTEEEECSCTTTCCC---SCCEEEEEECCSCG------------GGSHHHHHHTEEEEEEEEEEESS----HHHHHHHHH
T ss_pred CcEEEEECchhccCc---CCCccEEEEcCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence 679999999887432 36899999987554 36799999999999999986432 223556666
Q ss_pred HHHhh-CCCceEeE
Q psy4593 87 HCASV-FPRVAYGA 99 (132)
Q Consensus 87 ~l~~v-F~~v~~~~ 99 (132)
.+++. |..+..+.
T Consensus 223 ~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 223 SLSASGMHHLETVE 236 (275)
T ss_dssp HSGGGTEEEEEEEE
T ss_pred HHHHCCCeEEEEEE
Confidence 77664 66555544
No 63
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.28 E-value=0.00041 Score=51.05 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=53.4
Q ss_pred CCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 6 GYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
.++++++.+|+.+++.. ..+++||.|++...||+.-. ..-..+...++++.++++|+|||.+++.+.. ......
T Consensus 101 ~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~----~~~~~~ 176 (235)
T 3ckk_A 101 FQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV----LELHDW 176 (235)
T ss_dssp CTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC----HHHHHH
T ss_pred CCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC----HHHHHH
Confidence 46899999999875542 13578999999887875110 1123466789999999999999999986433 233444
Q ss_pred HHHHHHhh
Q psy4593 84 TLQHCASV 91 (132)
Q Consensus 84 ~~~~l~~v 91 (132)
+.+.+.+.
T Consensus 177 ~~~~l~~~ 184 (235)
T 3ckk_A 177 MCTHFEEH 184 (235)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHC
Confidence 55555543
No 64
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.28 E-value=0.00026 Score=52.84 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=45.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC--Cccc--------ccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP--AESL--------FQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~--~~~L--------~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..+++.+|+.++|+...++++|+|++|.+=. .+. -..+ +..+.++.+++.|+|+|+++++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~---~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYN---LSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCS---SCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCC---CCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4578999999999876667999999998522 110 0111 44677888999999999999864
No 65
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.28 E-value=0.0028 Score=46.88 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=64.0
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.+++++.+|+.++... ...++||+|+.....+ -.++++.+++.|+|||.++...+.. ..+.+..+.
T Consensus 130 ~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~-----------~~~ll~~~~~~LkpgG~l~~~~g~~--~~~e~~~~~ 196 (249)
T 3g89_A 130 KGARALWGRAEVLAREAGHREAYARAVARAVAP-----------LCVLSELLLPFLEVGGAAVAMKGPR--VEEELAPLP 196 (249)
T ss_dssp SSEEEEECCHHHHTTSTTTTTCEEEEEEESSCC-----------HHHHHHHHGGGEEEEEEEEEEECSC--CHHHHTTHH
T ss_pred CceEEEECcHHHhhcccccCCCceEEEECCcCC-----------HHHHHHHHHHHcCCCeEEEEEeCCC--cHHHHHHHH
Confidence 3599999999987643 1347899999876432 1688999999999999988764332 234455566
Q ss_pred HHHHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593 86 QHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 86 ~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
+.+++. |.........+|...+ ....++..+
T Consensus 197 ~~l~~~G~~~~~~~~~~~p~~~~-~R~l~~~~k 228 (249)
T 3g89_A 197 PALERLGGRLGEVLALQLPLSGE-ARHLVVLEK 228 (249)
T ss_dssp HHHHHHTEEEEEEEEEECTTTCC-EEEEEEEEE
T ss_pred HHHHHcCCeEEEEEEeeCCCCCC-cEEEEEEEe
Confidence 666654 5544554556675433 444555544
No 66
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=97.27 E-value=0.0026 Score=45.61 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=58.1
Q ss_pred CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC-CC-CC-hH
Q psy4593 7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT-LW-YS-LD 79 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~-~~-~~-~~ 79 (132)
++++++.+|+.+.. .. ..++||+|++|...+ -....+++.+++.|+|||.+++.. .+ .. .. ..
T Consensus 122 ~~v~~~~~d~~~~~~~~~-~~~~~D~v~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 191 (227)
T 1g8a_A 122 RNIVPILGDATKPEEYRA-LVPKVDVIFEDVAQP---------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ 191 (227)
T ss_dssp TTEEEEECCTTCGGGGTT-TCCCEEEEEECCCST---------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH
T ss_pred CCCEEEEccCCCcchhhc-ccCCceEEEECCCCH---------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhh
Confidence 68999999987632 22 345899999987533 113466999999999999988741 11 11 11 12
Q ss_pred HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee
Q psy4593 80 CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 80 ~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as 116 (132)
.....+..+.+.|..+... .++.|.. ...++++.
T Consensus 192 ~~~~~l~~l~~~f~~~~~~--~~~~~~~-~~~~~~~~ 225 (227)
T 1g8a_A 192 VFREVERELSEYFEVIERL--NLEPYEK-DHALFVVR 225 (227)
T ss_dssp HHHHHHHHHHTTSEEEEEE--ECTTTSS-SEEEEEEE
T ss_pred hhHHHHHHHHhhceeeeEe--ccCcccC-CCEEEEEE
Confidence 3344455555556655442 3444533 34455554
No 67
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=97.27 E-value=0.0021 Score=43.96 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=47.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
++ .+.+|+.+.+.. ..++||+|++...-. . .++++.+++.|+|||.+++...+ .+....+.+.
T Consensus 77 ~~-~~~~d~~~~~~~-~~~~~D~i~~~~~~~--------~---~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~ 139 (178)
T 3hm2_A 77 RI-AVQQGAPRAFDD-VPDNPDVIFIGGGLT--------A---PGVFAAAWKRLPVGGRLVANAVT----VESEQMLWAL 139 (178)
T ss_dssp SE-EEECCTTGGGGG-CCSCCSEEEECC-TT--------C---TTHHHHHHHTCCTTCEEEEEECS----HHHHHHHHHH
T ss_pred CE-EEecchHhhhhc-cCCCCCEEEECCccc--------H---HHHHHHHHHhcCCCCEEEEEeec----cccHHHHHHH
Confidence 67 788898777665 447899999765332 1 77899999999999999986432 2234445555
Q ss_pred HHhhC
Q psy4593 88 CASVF 92 (132)
Q Consensus 88 l~~vF 92 (132)
+++..
T Consensus 140 ~~~~~ 144 (178)
T 3hm2_A 140 RKQFG 144 (178)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 55553
No 68
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.25 E-value=0.0015 Score=51.34 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=55.5
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCC--cc--cccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPA--ES--LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~--~~--L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
+++++.+|+.+++... ...+||+|++|.+--. .... .. -.-.+++..+.+.|+|||++++.+.+.....+.+
T Consensus 272 ~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 349 (396)
T 3c0k_A 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV--ENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLF 349 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTT--TCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHH
T ss_pred ceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCC--CChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHH
Confidence 7899999999987641 1468999999974310 1100 00 1235788999999999999998655544444444
Q ss_pred HHHHH-HHHhhCCCce
Q psy4593 82 GNTLQ-HCASVFPRVA 96 (132)
Q Consensus 82 ~~~~~-~l~~vF~~v~ 96 (132)
..++. .+.+.-..+.
T Consensus 350 ~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 350 QKIIADAAIDAGRDVQ 365 (396)
T ss_dssp HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHcCCeEE
Confidence 44443 5555433333
No 69
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.25 E-value=0.0003 Score=52.14 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=54.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~ 85 (132)
.++++++.+|+.+... .++.||+|++|..++ .++++.+++.|+|||.+++...+ .+....+.
T Consensus 152 ~~~v~~~~~d~~~~~~--~~~~~D~v~~~~~~~------------~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~ 213 (280)
T 1i9g_A 152 PDNWRLVVSDLADSEL--PDGSVDRAVLDMLAP------------WEVLDAVSRLLVAGGVLMVYVAT----VTQLSRIV 213 (280)
T ss_dssp CTTEEEECSCGGGCCC--CTTCEEEEEEESSCG------------GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHH
T ss_pred CCcEEEEECchHhcCC--CCCceeEEEECCcCH------------HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHHH
Confidence 3689999999877521 356899999987665 26799999999999999987533 23456677
Q ss_pred HHHHh--hCCCceEe
Q psy4593 86 QHCAS--VFPRVAYG 98 (132)
Q Consensus 86 ~~l~~--vF~~v~~~ 98 (132)
+.+++ .|..+..+
T Consensus 214 ~~l~~~~~f~~~~~~ 228 (280)
T 1i9g_A 214 EALRAKQCWTEPRAW 228 (280)
T ss_dssp HHHHHHSSBCCCEEE
T ss_pred HHHHhcCCcCCcEEE
Confidence 77775 36655544
No 70
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.25 E-value=0.0026 Score=45.45 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=49.4
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++.+|+.+.+.. ...||+|+++. . . ..++++.+.+.|+|||.+++.... .+....+.+.
T Consensus 105 ~v~~~~~d~~~~~~~--~~~~D~v~~~~--~---~-------~~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~ 166 (204)
T 3njr_A 105 RMRAVQGTAPAALAD--LPLPEAVFIGG--G---G-------SQALYDRLWEWLAPGTRIVANAVT----LESETLLTQL 166 (204)
T ss_dssp TEEEEESCTTGGGTT--SCCCSEEEECS--C---C-------CHHHHHHHHHHSCTTCEEEEEECS----HHHHHHHHHH
T ss_pred CEEEEeCchhhhccc--CCCCCEEEECC--c---c-------cHHHHHHHHHhcCCCcEEEEEecC----cccHHHHHHH
Confidence 799999999987765 35799999875 1 1 233899999999999999986533 2345666666
Q ss_pred HHhh
Q psy4593 88 CASV 91 (132)
Q Consensus 88 l~~v 91 (132)
+++.
T Consensus 167 l~~~ 170 (204)
T 3njr_A 167 HARH 170 (204)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6665
No 71
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=97.22 E-value=0.00062 Score=52.57 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=47.7
Q ss_pred CCCcEEE-EccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-----Cccc--ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 6 GYPVLSA-RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-----AESL--FQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 6 d~rv~v~-~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-----~~~L--~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+...+++ .+|++++|+...++++|+|+.|.+=. .+. .... +..+.+..+++.|+|||++++..+.
T Consensus 36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~---~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYN---IMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSB---CCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cccceEEECCcHHHHHHhCccCCcCEEEECCCCC---CCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 3456788 99999999886667999999998522 110 1111 3467788899999999999988643
No 72
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=97.20 E-value=0.00015 Score=54.10 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+.+. +++||+|++|..++ .++++.+++.|+|||.+++...+ ......+.+
T Consensus 164 ~~v~~~~~d~~~~~~---~~~~D~V~~~~~~~------------~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~~ 224 (277)
T 1o54_A 164 ERVTIKVRDISEGFD---EKDVDALFLDVPDP------------WNYIDKCWEALKGGGRFATVCPT----TNQVQETLK 224 (277)
T ss_dssp GGEEEECCCGGGCCS---CCSEEEEEECCSCG------------GGTHHHHHHHEEEEEEEEEEESS----HHHHHHHHH
T ss_pred CCEEEEECCHHHccc---CCccCEEEECCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence 578899999887643 35799999987554 36789999999999999986532 223456666
Q ss_pred HHHhh-CCCceE
Q psy4593 87 HCASV-FPRVAY 97 (132)
Q Consensus 87 ~l~~v-F~~v~~ 97 (132)
.+++. |..+..
T Consensus 225 ~l~~~gf~~~~~ 236 (277)
T 1o54_A 225 KLQELPFIRIEV 236 (277)
T ss_dssp HHHHSSEEEEEE
T ss_pred HHHHCCCceeEE
Confidence 67654 655544
No 73
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=97.17 E-value=0.00072 Score=50.51 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=49.4
Q ss_pred CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN 83 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~ 83 (132)
-..++++.+.+|+-+. .- .+++||+|++-..=. .+-...+++.++++|+|||++++...+.....+.+..
T Consensus 78 ~~~~~v~~~~~~~e~~-~~-~~~sfD~v~~~~~~h--------~~~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~ 147 (257)
T 4hg2_A 78 LRHPRVTYAVAPAEDT-GL-PPASVDVAIAAQAMH--------WFDLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDA 147 (257)
T ss_dssp CCCTTEEEEECCTTCC-CC-CSSCEEEEEECSCCT--------TCCHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHH
T ss_pred hhcCCceeehhhhhhh-cc-cCCcccEEEEeeehh--------HhhHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHH
Confidence 3568899999997552 22 568999999742212 1224679999999999999998764222222234555
Q ss_pred HHHHHH
Q psy4593 84 TLQHCA 89 (132)
Q Consensus 84 ~~~~l~ 89 (132)
+++.+.
T Consensus 148 ~~~~~~ 153 (257)
T 4hg2_A 148 VVDRLY 153 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 74
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=97.17 E-value=0.00046 Score=52.80 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=58.7
Q ss_pred CcEE-EEccHHHHhcCCCCCeecEEEEcCCCCCCCC---CCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593 8 PVLS-ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV---CPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG 82 (132)
Q Consensus 8 rv~v-~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~---~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~ 82 (132)
++++ +.+|+.+.- ..++||+|++|...+..+. ... ..-+-.+.++.+++.|+|||.+++-.-... . ..
T Consensus 106 ~v~~~i~gD~~~~~---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-~---~~ 178 (290)
T 2xyq_A 106 DADSTLIGDCATVH---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-W---NA 178 (290)
T ss_dssp SSSEEEESCGGGCC---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-C---CH
T ss_pred CCEEEEECccccCC---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-C---HH
Confidence 6778 999987632 2368999999976442101 001 111225789999999999999997431111 1 23
Q ss_pred HHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593 83 NTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 83 ~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
.+.+.+++. |..+... .+.....-.|+++..
T Consensus 179 ~l~~~l~~~GF~~v~~~----asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 179 DLYKLMGHFSWWTAFVT----NVNASSSEAFLIGAN 210 (290)
T ss_dssp HHHHHHTTEEEEEEEEE----GGGTTSSCEEEEEEE
T ss_pred HHHHHHHHcCCcEEEEE----EcCCCchheEEecCC
Confidence 566777776 8766653 222233344565543
No 75
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.16 E-value=0.00047 Score=52.87 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=53.4
Q ss_pred CCcEEEEc-cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 7 YPVLSARQ-DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 7 ~rv~v~~~-Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
+++.++.+ |.... ..++||+|++|..-. .+ ..+. +...++.+++.|+|||.+++..-.+ .....
T Consensus 131 ~~v~~~~~~D~~~l----~~~~fD~V~sd~~~~---~g--~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~--~~~~~ 199 (305)
T 2p41_A 131 NLVRLQSGVDVFFI----PPERCDTLLCDIGES---SP--NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP--YMSSV 199 (305)
T ss_dssp GGEEEECSCCTTTS----CCCCCSEEEECCCCC---CS--SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC--CSHHH
T ss_pred CCeEEEeccccccC----CcCCCCEEEECCccc---cC--cchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC--CCchH
Confidence 56777777 76542 346899999996421 01 1111 1147888999999999999864222 22345
Q ss_pred HHHHHHHHhhCCCceEe
Q psy4593 82 GNTLQHCASVFPRVAYG 98 (132)
Q Consensus 82 ~~~~~~l~~vF~~v~~~ 98 (132)
..+++.+++.|..+...
T Consensus 200 ~~~l~~l~~~f~~v~~~ 216 (305)
T 2p41_A 200 IEKMEALQRKHGGALVR 216 (305)
T ss_dssp HHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHHcCCEEEe
Confidence 67788888889887653
No 76
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.14 E-value=0.00095 Score=48.84 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++... .+..+|.|++...+|+... ..-..+...++++.+.+.|+|||++++.+
T Consensus 107 ~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 107 QNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 57999999999877642 4578999998877774111 11234556899999999999999999854
No 77
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.11 E-value=0.00051 Score=50.42 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=41.7
Q ss_pred CCCcEEEEccHHHH--hcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH-hcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDF--MSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR-ALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~--l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~-~L~p~Gil~~~ 70 (132)
.++++++.+|+.++ +....+..||+|++|.... --.++++.+++ .|+|||++++.
T Consensus 129 ~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~----------~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 129 MENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHA----------NTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCS----------SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CCceEEEECcchhHHHHHhhccCCCCEEEECCchH----------hHHHHHHHHHHhhCCCCCEEEEE
Confidence 36899999999875 4331234799999987411 23678999997 99999999985
No 78
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.11 E-value=0.00058 Score=57.97 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-Cccc-----ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESL-----FQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+++++++.+|+.+++.. ..++||+|++|.+--. .+. .... .-.++++.+.+.|+|||++++-+.+
T Consensus 589 ~~~v~~i~~D~~~~l~~-~~~~fD~Ii~DPP~f~--~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 589 GRAHRLIQADCLAWLRE-ANEQFDLIFIDPPTFS--NSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp STTEEEEESCHHHHHHH-CCCCEEEEEECCCSBC---------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccceEEEecCHHHHHHh-cCCCccEEEECCcccc--CCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 46899999999999987 5689999999974210 010 0011 1246788899999999999975433
No 79
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.09 E-value=0.00056 Score=48.79 Aligned_cols=56 Identities=7% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~ 71 (132)
++++++.+|+.+++.. ..++||+|++|.. ... -...++++.+.+. |+|||++++..
T Consensus 103 ~~v~~~~~D~~~~~~~-~~~~fD~V~~~~p-----~~~---~~~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 103 GNARVVNSNAMSFLAQ-KGTPHNIVFVDPP-----FRR---GLLEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp CSEEEECSCHHHHHSS-CCCCEEEEEECCS-----SST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CcEEEEECCHHHHHhh-cCCCCCEEEECCC-----CCC---CcHHHHHHHHHhcCccCCCcEEEEEE
Confidence 5899999999999876 5678999999853 111 1235677887664 99999998754
No 80
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=97.08 E-value=0.00096 Score=51.32 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=41.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.++- ++.||+|+++..-+ -..++++.+++.|+|||.+++..
T Consensus 172 ~~v~~v~gDa~~l~----d~~FDvV~~~a~~~----------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 172 DGVNVITGDETVID----GLEFDVLMVAALAE----------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CSEEEEESCGGGGG----GCCCSEEEECTTCS----------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCeEEEECchhhCC----CCCcCEEEECCCcc----------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 68999999998852 46899999875422 13689999999999999999864
No 81
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.08 E-value=0.0023 Score=45.79 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=52.8
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC------------CCCcccccHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV------------CPAESLFQASYFELMSRALRPGGIVCSQAGTLW 75 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~------------~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~ 75 (132)
+++++.+|+..+..- .+++||+|+.+..--.... +....-...++++.+++.|+|||.+++...+
T Consensus 105 ~v~~~~~d~~~~~~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-- 181 (230)
T 3evz_A 105 NVRLVKSNGGIIKGV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD-- 181 (230)
T ss_dssp CCEEEECSSCSSTTT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES--
T ss_pred CcEEEeCCchhhhhc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc--
Confidence 789999997543222 4578999998853110000 0001111278999999999999999875322
Q ss_pred CChHHHHHHHHHHHhhCCCceE
Q psy4593 76 YSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 76 ~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
.......+.+.+++..-.+..
T Consensus 182 -~~~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 182 -KEKLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEE
T ss_pred -cHhHHHHHHHHHHHcCCceEE
Confidence 224456777777776334443
No 82
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.08 E-value=0.0005 Score=54.67 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=42.2
Q ss_pred cEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 VLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++.+|+.++++ . ..++||+|++|.+. . ..+|++.+.+.|++||++.+-
T Consensus 107 v~v~~~Da~~~l~~~-~~~~fD~V~lDP~g------~-----~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 107 YEIHGMEANFFLRKE-WGFGFDYVDLDPFG------T-----PVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp EEEECSCHHHHHHSC-CSSCEEEEEECCSS------C-----CHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHh-hCCCCcEEEECCCc------C-----HHHHHHHHHHHhCCCCEEEEE
Confidence 8999999999998 7 46789999999731 1 157999999999999999874
No 83
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.07 E-value=0.00082 Score=54.58 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=55.0
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEEec
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++.+|+.++... ..++||+|++|++-.. .+. +... ...++++.+.+.|+|||.++.-+
T Consensus 153 v~~~~~Da~~l~~~-~~~~FD~Il~D~PcSg--~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 153 LAVTQAPPRALAEA-FGTYFHRVLLDAPCSG--EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp CEEECSCHHHHHHH-HCSCEEEEEEECCCCC--GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEECCHHHhhhh-ccccCCEEEECCCcCC--ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 88999999997643 3578999999985321 221 1111 12789999999999999998765
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
++... +.-..+++.+.+.+|+..+
T Consensus 230 Cs~~~--eEne~vv~~~l~~~~~~~l 253 (464)
T 3m6w_A 230 CTFAP--EENEGVVAHFLKAHPEFRL 253 (464)
T ss_dssp SCCCG--GGTHHHHHHHHHHCTTEEE
T ss_pred ccCch--hcCHHHHHHHHHHCCCcEE
Confidence 55332 2234555555555655443
No 84
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.06 E-value=0.00072 Score=54.76 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=52.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc------------c-----cccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE------------S-----LFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~------------~-----L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.++.+|+.++... .+++||+|++|++=.. .+.-. . -...++++.+.+.|+|||.++.
T Consensus 156 ~nv~v~~~Da~~l~~~-~~~~FD~Il~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 232 (456)
T 3m4x_A 156 SNAIVTNHAPAELVPH-FSGFFDRIVVDAPCSG--EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY 232 (456)
T ss_dssp SSEEEECCCHHHHHHH-HTTCEEEEEEECCCCC--GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CceEEEeCCHHHhhhh-ccccCCEEEECCCCCC--ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3688999999998654 3578999999985211 22110 0 1234889999999999999987
Q ss_pred ecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 70 QAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
.+++... +.-..+++.+.+.++
T Consensus 233 sTCs~~~--eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 233 STCTFAP--EENEEIISWLVENYP 254 (456)
T ss_dssp EESCCCG--GGTHHHHHHHHHHSS
T ss_pred EEeeccc--ccCHHHHHHHHHhCC
Confidence 6555322 223344455554444
No 85
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.06 E-value=0.00052 Score=52.34 Aligned_cols=56 Identities=9% Similarity=-0.088 Sum_probs=46.6
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++++.+|+.+.|.+....+||+|++|+-- .-.+.++|+.+...|+|||+++.-
T Consensus 188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---------y~~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---------YESTWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp STTEEEEESCHHHHSTTCCCCCEEEEEECCCS---------HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---------cccHHHHHHHHHhhcCCCEEEEEc
Confidence 58999999999999987445789999999721 112578999999999999999983
No 86
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.05 E-value=0.00066 Score=47.65 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCeecEEEEcCCCCCCCCCCC--cccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPA--ESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~--~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
+.+||+|+.|..-.+ .+.. ...- ....++.+++.|+|||.+++.... .+....+.+.+++.|..+..+
T Consensus 104 ~~~fD~v~~~~~~~~--~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~l~~~l~~~f~~v~~~ 177 (201)
T 2plw_A 104 DKKIDIILSDAAVPC--IGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL----GSQTNNLKTYLKGMFQLVHTT 177 (201)
T ss_dssp TCCEEEEEECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC----STTHHHHHHHHHTTEEEEEEC
T ss_pred CCcccEEEeCCCcCC--CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC----CCCHHHHHHHHHHHHheEEEE
Confidence 368999999864321 1110 0000 124788899999999999975311 112456677788888877654
Q ss_pred EEeccCcCCCceeEEEeecC
Q psy4593 99 ATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 99 ~~~~p~~~~~~~~f~~as~~ 118 (132)
.... +.+...=.|++|.+.
T Consensus 178 ~~~~-~r~~s~e~y~v~~~~ 196 (201)
T 2plw_A 178 KPKA-SRNESREIYLVCKNF 196 (201)
T ss_dssp CCC------CCEEEEEEEEE
T ss_pred CCcc-cCCcCceEEEEEecC
Confidence 3221 112223456777653
No 87
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.01 E-value=0.00044 Score=49.29 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCcEEEEccHHHHhcCCCCCe-ecEEEEcCCCCCCCCCCCcccccHHHHHHH--HHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNM-CGLVVSGAAGPGRVVCPAESLFQASYFELM--SRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~-yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++....+++ ||+|++|.. ... -...++++.+ .+.|+|||++++..
T Consensus 104 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-----~~~---~~~~~~l~~~~~~~~LkpgG~l~i~~ 163 (201)
T 2ift_A 104 EQAEVINQSSLDFLKQPQNQPHFDVVFLDPP-----FHF---NLAEQAISLLCENNWLKPNALIYVET 163 (201)
T ss_dssp TTEEEECSCHHHHTTSCCSSCCEEEEEECCC-----SSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cceEEEECCHHHHHHhhccCCCCCEEEECCC-----CCC---ccHHHHHHHHHhcCccCCCcEEEEEE
Confidence 689999999999876523568 999999853 111 1235678888 56799999998754
No 88
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.01 E-value=0.00018 Score=52.06 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=42.6
Q ss_pred CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+++.... +++||+|++|...+ -..++++.+.+.|+|||++++.
T Consensus 105 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 105 SRIELLFGDALQLGEKLELYPLFDVLFIDAAKG----------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp TTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcEEEEECCHHHHHHhcccCCCccEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 579999999988765411 46899999986421 2478999999999999999985
No 89
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=96.99 E-value=0.0028 Score=48.40 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=55.1
Q ss_pred CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEecCCCCCChHHH
Q psy4593 6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
+++++|+..||.++|+.. ...+||+|++|.+ .... ..+. +-.+.+.+ .+.|+|++++|- |..+....
T Consensus 136 ~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP-----Ye~k-~~~~-~vl~~L~~~~~r~~~Gi~v~WY--Pi~~~~~~ 206 (283)
T 2oo3_A 136 NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS-----YERK-EEYK-EIPYAIKNAYSKFSTGLYCVWY--PVVNKAWT 206 (283)
T ss_dssp TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC-----CCST-THHH-HHHHHHHHHHHHCTTSEEEEEE--EESSHHHH
T ss_pred CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC-----CCCC-cHHH-HHHHHHHHhCccCCCeEEEEEE--eccchHHH
Confidence 478999999999999752 3457999999973 1111 1222 22333333 567999999985 55667778
Q ss_pred HHHHHHHHhhCCCc
Q psy4593 82 GNTLQHCASVFPRV 95 (132)
Q Consensus 82 ~~~~~~l~~vF~~v 95 (132)
..+.+.|++.-..+
T Consensus 207 ~~~~~~l~~~~~~~ 220 (283)
T 2oo3_A 207 EQFLRKMREISSKS 220 (283)
T ss_dssp HHHHHHHHHHCSSE
T ss_pred HHHHHHHHhcCCCe
Confidence 88999997653333
No 90
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=96.97 E-value=0.0011 Score=50.40 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|++++..+ ..||.|+.|.+- .+.+|+..+.++|++||++...
T Consensus 175 ~~v~~~~~D~~~~~~~---~~~D~Vi~~~p~-----------~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 175 DRMSAYNMDNRDFPGE---NIADRILMGYVV-----------RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp TTEEEECSCTTTCCCC---SCEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CcEEEEeCcHHHhccc---cCCCEEEECCCC-----------cHHHHHHHHHHHcCCCCEEEEE
Confidence 5799999999998654 689999988631 2367899999999999998654
No 91
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=96.96 E-value=0.0046 Score=43.56 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++..|........ ...+||+|++... .. .---..+++.+++.|+|||.+++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-----l~---~~~~~~~l~~~~~~L~pgG~l~~~~ 152 (227)
T 3e8s_A 94 GAGEVHLASYAQLAEAKVPVGKDYDLICANFA-----LL---HQDIIELLSAMRTLLVPGGALVIQT 152 (227)
T ss_dssp CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-----CC---SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccchhhHHhhcccccccCCCccEEEECch-----hh---hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence 56778899988873321 3456999997532 11 1123689999999999999999854
No 92
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.96 E-value=0.0011 Score=52.14 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=50.2
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCC-ccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPA-ESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLD 79 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~-~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~ 79 (132)
+++++.+|+.+++... ...+||+|++|.+-- ... ..+ -..++++.+.+.|+|||+++..+.+.....+
T Consensus 268 ~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~----~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 343 (396)
T 2as0_A 268 RMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAF----VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ 343 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS----CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred cceEEECCHHHHHHHHHhhCCCCCEEEECCCCC----CCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHH
Confidence 7899999999987531 246899999997421 111 111 1357889999999999998876655555544
Q ss_pred HHHHHH
Q psy4593 80 CVGNTL 85 (132)
Q Consensus 80 ~~~~~~ 85 (132)
.+..++
T Consensus 344 ~~~~~v 349 (396)
T 2as0_A 344 MFKDMI 349 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 93
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=96.92 E-value=0.0029 Score=49.89 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=54.0
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++.+|+.+.... +++||+|+++..-.. ......-...++++.+++.|+|||++++-+... . .....
T Consensus 281 ~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~--~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~-l------~~~~~ 349 (381)
T 3dmg_A 281 KAQALHSDVDEALTE--EARFDIIVTNPPFHV--GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF-L------KYEPL 349 (381)
T ss_dssp CCEEEECSTTTTSCT--TCCEEEEEECCCCCT--TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT-S------CHHHH
T ss_pred CeEEEEcchhhcccc--CCCeEEEEECCchhh--cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC-C------ChHHH
Confidence 488999999886543 478999999854221 011111224689999999999999998754222 1 23356
Q ss_pred HHhhCCCceEe
Q psy4593 88 CASVFPRVAYG 98 (132)
Q Consensus 88 l~~vF~~v~~~ 98 (132)
+++.|.++...
T Consensus 350 l~~~f~~v~~l 360 (381)
T 3dmg_A 350 LEEKFGAFQTL 360 (381)
T ss_dssp HHHHHSCCEEE
T ss_pred HHHhhccEEEE
Confidence 77788888764
No 94
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.92 E-value=0.0003 Score=48.58 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=42.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++.. .+++||+|+.|.. .. .-...++++.+. +.|+|||++++..
T Consensus 81 ~~~~~~~~d~~~~~~~-~~~~fD~i~~~~~-----~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 81 NRFTLLKMEAERAIDC-LTGRFDLVFLDPP-----YA---KETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp GGEEEECSCHHHHHHH-BCSCEEEEEECCS-----SH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CceEEEECcHHHhHHh-hcCCCCEEEECCC-----CC---cchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 4789999999998765 4567999999842 11 112367788887 8999999999864
No 95
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.91 E-value=0.0034 Score=43.40 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=38.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|......- .+++||+|+.+. +-| .... ..--..++++.+++.|+|||.+++-
T Consensus 70 ~~v~~~~~~~~~l~~~-~~~~fD~v~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 70 ENTELILDGHENLDHY-VREPIRAAIFNLGYLP---SADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp CCEEEEESCGGGGGGT-CCSCEEEEEEEEC--------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcEEEEeCcHHHHHhh-ccCCcCEEEEeCCCCC---CcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 6788888776653333 457899999884 222 1100 1112357889999999999999864
No 96
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.87 E-value=0.0012 Score=50.97 Aligned_cols=65 Identities=6% Similarity=0.022 Sum_probs=47.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+++ ++||+|++|.+.- ..++++.+.+.|+|||+++....+.. .....+
T Consensus 243 ~~v~~~~~D~~~~~-----~~fD~Vi~dpP~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~-----~~~~~~ 301 (336)
T 2yx1_A 243 HKIIPILSDVREVD-----VKGNRVIMNLPKF-----------AHKFIDKALDIVEEGGVIHYYTIGKD-----FDKAIK 301 (336)
T ss_dssp TTEEEEESCGGGCC-----CCEEEEEECCTTT-----------GGGGHHHHHHHEEEEEEEEEEEEESS-----SHHHHH
T ss_pred CcEEEEECChHHhc-----CCCcEEEECCcHh-----------HHHHHHHHHHHcCCCCEEEEEEeecC-----chHHHH
Confidence 57999999999886 5799999986311 23889999999999999887543332 233444
Q ss_pred HHHhhC
Q psy4593 87 HCASVF 92 (132)
Q Consensus 87 ~l~~vF 92 (132)
.+++.+
T Consensus 302 ~l~~~~ 307 (336)
T 2yx1_A 302 LFEKKC 307 (336)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 555554
No 97
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.86 E-value=0.0021 Score=51.19 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=43.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Ccc-------------cccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AES-------------LFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~-------------L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+.+........+||+|++|++-.. .+. +.. -...++++.+.+.|+|||.++.-
T Consensus 296 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg--~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 296 KATVKQGDGRYPSQWCGEQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp CCEEEECCTTCTHHHHTTCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CeEEEeCchhhchhhcccCCCCEEEEeCCCCc--ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 47888999876542112368999999975221 221 100 01258899999999999999976
Q ss_pred cCCC
Q psy4593 71 AGTL 74 (132)
Q Consensus 71 ~~~~ 74 (132)
.++.
T Consensus 374 tcs~ 377 (429)
T 1sqg_A 374 TCSV 377 (429)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 5443
No 98
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.82 E-value=0.0026 Score=45.21 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=39.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+... .- .+++||+|++...-. ..+..-....+++.+++.|+|||.+++.
T Consensus 83 ~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 83 GKAEFKVENASSL-SF-HDSSFDFAVMQAFLT----SVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp CEEEEEECCTTSC-CS-CTTCEEEEEEESCGG----GCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEEEeccccc-CC-CCCceeEEEEcchhh----cCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4678999997653 22 467899999753211 1111111237999999999999999875
No 99
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.81 E-value=0.0029 Score=48.36 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+.++... .++||+|++|+.-.. .+. +... ...++++.+.+.|+|||.++.
T Consensus 169 ~~v~~~~~D~~~~~~~--~~~fD~Il~d~Pcsg--~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~ 244 (315)
T 1ixk_A 169 LNVILFHSSSLHIGEL--NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY 244 (315)
T ss_dssp CSEEEESSCGGGGGGG--CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CeEEEEECChhhcccc--cccCCEEEEeCCCCC--cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4689999999886542 457999999975211 121 1000 125899999999999999988
Q ss_pred ecCCC
Q psy4593 70 QAGTL 74 (132)
Q Consensus 70 ~~~~~ 74 (132)
-+++.
T Consensus 245 stcs~ 249 (315)
T 1ixk_A 245 STCSL 249 (315)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 65443
No 100
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=96.80 E-value=0.0012 Score=46.46 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=53.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.++. ..++||+|+.....+ -..+++.+++.|+|||.+++..+. ...+.+..+
T Consensus 115 ~~v~~~~~d~~~~~---~~~~~D~i~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~-- 176 (207)
T 1jsx_A 115 ENIEPVQSRVEEFP---SEPPFDGVISRAFAS-----------LNDMVSWCHHLPGEQGRFYALKGQ--MPEDEIALL-- 176 (207)
T ss_dssp SSEEEEECCTTTSC---CCSCEEEEECSCSSS-----------HHHHHHHHTTSEEEEEEEEEEESS--CCHHHHHTS--
T ss_pred CCeEEEecchhhCC---ccCCcCEEEEeccCC-----------HHHHHHHHHHhcCCCcEEEEEeCC--CchHHHHHH--
Confidence 34889999987754 236899999764322 268999999999999999986433 222222222
Q ss_pred HHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593 87 HCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 87 ~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
.+.|..+.......|.+. +...++++.+
T Consensus 177 --~~g~~~~~~~~~~~~~~~-~~~~~~~~~k 204 (207)
T 1jsx_A 177 --PEEYQVESVVKLQVPALD-GERHLVVIKA 204 (207)
T ss_dssp --CTTEEEEEEEEEECC--C-CEEEEEEEEE
T ss_pred --hcCCceeeeeeeccCCCC-CceEEEEEEe
Confidence 124444443333466653 3455555544
No 101
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.002 Score=46.53 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=42.8
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.+++....+++||+|++...-.+ -+.. --..+++.+++.|+|||.+++..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~---~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 82 KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEH---LDPE--RLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp TSEEECSCHHHHHHTSCTTCBSEEEEESCGGG---SCGG--GHHHHHHHHHHHBCTTCCEEEEE
T ss_pred hcceeeccHHHHhhhcCCCCeeEEEECCchhh---CCcH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 37889999999875545689999997432110 1110 12789999999999999998764
No 102
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=96.76 E-value=0.0075 Score=43.32 Aligned_cols=81 Identities=11% Similarity=-0.010 Sum_probs=49.2
Q ss_pred CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC--CCCC-hHH
Q psy4593 7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT--LWYS-LDC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~--~~~~-~~~ 80 (132)
+++..+.+|+..... ....++||+|++|..++ .-...+++.+++.|+|||.+++.. .+ .... .+.
T Consensus 105 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~---------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 175 (210)
T 1nt2_A 105 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK---------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV 175 (210)
T ss_dssp SSEEEECSCTTCGGGTTTTCCCEEEEEECCCST---------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH
T ss_pred CCeEEEEcCCCCchhhcccccceeEEEEeccCh---------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHH
Confidence 467778888776421 11236899999996433 112356899999999999998752 11 1112 223
Q ss_pred HHHHHHHHHhhCCCce
Q psy4593 81 VGNTLQHCASVFPRVA 96 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~ 96 (132)
++..++.+++.|.-+.
T Consensus 176 ~~~~~~~l~~~f~~~~ 191 (210)
T 1nt2_A 176 FKSVLKEMEGDFKIVK 191 (210)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhcEEee
Confidence 3344555776665444
No 103
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=96.73 E-value=0.0033 Score=47.08 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=40.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.++ +++||+|+....-.+ ..-+ ..-.-..+++.+++.|+|||.+++..
T Consensus 122 ~~v~~~~~d~~~~-----~~~fD~v~~~~~~~~--~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 122 RRKEVRIQGWEEF-----DEPVDRIVSLGAFEH--FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SCEEEEECCGGGC-----CCCCSEEEEESCGGG--TTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CceEEEECCHHHc-----CCCccEEEEcchHHh--cCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4799999998775 468999997432110 1001 11233789999999999999999864
No 104
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.69 E-value=0.0015 Score=51.49 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=41.7
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++.+|+.+++.. ..++||+|++|.+-. ..+|++.+.+.|+++|++.+.
T Consensus 114 i~v~~~Da~~~~~~-~~~~fD~I~lDP~~~-----------~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 114 IVINHDDANRLMAE-RHRYFHFIDLDPFGS-----------PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEESCHHHHHHH-STTCEEEEEECCSSC-----------CHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEcCcHHHHHHh-ccCCCCEEEeCCCCC-----------HHHHHHHHHHhcCCCCEEEEE
Confidence 89999999999876 456899999986421 268999999999999998774
No 105
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.69 E-value=0.0022 Score=52.06 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+.++... ..++||+|++|++-.. .+. +... ...++++.+.+.|+|||.++.
T Consensus 168 ~nv~~~~~D~~~~~~~-~~~~fD~Il~D~PcSg--~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy 244 (479)
T 2frx_A 168 SNVALTHFDGRVFGAA-VPEMFDAILLDAPCSG--EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244 (479)
T ss_dssp CSEEEECCCSTTHHHH-STTCEEEEEEECCCCC--GGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcEEEEeCCHHHhhhh-ccccCCEEEECCCcCC--cccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4688999999887543 3468999999975211 211 1111 135788999999999999997
Q ss_pred ecCCC
Q psy4593 70 QAGTL 74 (132)
Q Consensus 70 ~~~~~ 74 (132)
-+++.
T Consensus 245 sTcs~ 249 (479)
T 2frx_A 245 STCTL 249 (479)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 65554
No 106
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=96.69 E-value=0.0027 Score=43.75 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=49.6
Q ss_pred CcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC--C----CCCChHH
Q psy4593 8 PVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG--T----LWYSLDC 80 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~--~----~~~~~~~ 80 (132)
+++++.+|+.+.-.. ..+++||+|+.-..-.+ . .+ . ..++++.+++.|+|||.+++... . .... ..
T Consensus 43 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~--~-~~-~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~-~~ 115 (176)
T 2ld4_A 43 EGRVSVENIKQLLQSAHKESSFDIILSGLVPGS--T-TL-H--SAEILAEIARILRPGGCLFLKEPVETAVDNNSKV-KT 115 (176)
T ss_dssp TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC--C-CC-C--CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSS-CC
T ss_pred CcEEEEechhcCccccCCCCCEeEEEECChhhh--c-cc-C--HHHHHHHHHHHCCCCEEEEEEccccccccccccc-CC
Confidence 588999998875431 13578999997332111 1 01 1 28899999999999999987421 0 0111 11
Q ss_pred HHHHHHHHHhh-C
Q psy4593 81 VGNTLQHCASV-F 92 (132)
Q Consensus 81 ~~~~~~~l~~v-F 92 (132)
...+.+.|++. |
T Consensus 116 ~~~~~~~l~~aGf 128 (176)
T 2ld4_A 116 ASKLCSALTLSGL 128 (176)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 45677777766 8
No 107
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=96.67 E-value=0.0053 Score=46.34 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=53.6
Q ss_pred CcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc---ccHHHHHHHHHhcCCCc--EEEEecCCCCCChHH
Q psy4593 8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL---FQASYFELMSRALRPGG--IVCSQAGTLWYSLDC 80 (132)
Q Consensus 8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L---~t~eF~~~~~~~L~p~G--il~~~~~~~~~~~~~ 80 (132)
++.++ .+|+.++ .+++||+|++|.. . ..+...+ -+...++.+.+.|+||| .+++..-++. ...
T Consensus 131 ~v~~~~~~~D~~~l----~~~~fD~Vvsd~~-~---~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~--~~~ 200 (276)
T 2wa2_A 131 NLITFKSKVDVTKM----EPFQADTVLCDIG-E---SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY--SCD 200 (276)
T ss_dssp GGEEEECSCCGGGC----CCCCCSEEEECCC-C---CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC--SHH
T ss_pred CeEEEeccCcHhhC----CCCCcCEEEECCC-c---CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC--chh
Confidence 67788 8887762 3568999999975 2 2211110 01237888999999999 8887532332 233
Q ss_pred HHHHHHHHHhhCCCceEe
Q psy4593 81 VGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~~~ 98 (132)
...+++.+++.|..+.+.
T Consensus 201 ~~~~l~~l~~~f~~v~v~ 218 (276)
T 2wa2_A 201 VLEALMKMQARFGGGLIR 218 (276)
T ss_dssp HHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 456777888899888763
No 108
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.0025 Score=51.07 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=44.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cc--------c---c--ccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AE--------S---L--FQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~--------~---L--~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+.++.....+++||+|++|++-.. .+. +. . + ...++++.+.+.|+|||.++.
T Consensus 310 ~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg--~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy 387 (450)
T 2yxl_A 310 KIVKPLVKDARKAPEIIGEEVADKVLLDAPCTS--SGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLY 387 (450)
T ss_dssp CSEEEECSCTTCCSSSSCSSCEEEEEEECCCCC--GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcEEEEEcChhhcchhhccCCCCEEEEcCCCCC--CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 468899999877543312368999999974321 221 00 0 0 126889999999999999997
Q ss_pred ecCCC
Q psy4593 70 QAGTL 74 (132)
Q Consensus 70 ~~~~~ 74 (132)
-.++.
T Consensus 388 ~tcs~ 392 (450)
T 2yxl_A 388 TTCSI 392 (450)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 65443
No 109
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=96.66 E-value=0.0033 Score=49.07 Aligned_cols=50 Identities=4% Similarity=-0.076 Sum_probs=38.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
|++++.+|+.+++....+++||+|++|.+ .... . -.+|++.+.+.|+|||
T Consensus 222 ~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p-----~~~~-~--~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 222 DIEIFTFDLRKPLPDYALHKFDTFITDPP-----ETLE-A--IRAFVGRGIATLKGPR 271 (373)
T ss_dssp CEEEECCCTTSCCCTTTSSCBSEEEECCC-----SSHH-H--HHHHHHHHHHTBCSTT
T ss_pred CEEEEEChhhhhchhhccCCccEEEECCC-----CchH-H--HHHHHHHHHHHcccCC
Confidence 79999999988654312468999999973 2211 2 2899999999999999
No 110
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.66 E-value=0.013 Score=43.44 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCC----------CCCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRV----------VCPAESL--------FQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~----------~~~~~~L--------~t~eF~~~~~~~L~p~Gil~ 68 (132)
++++++.+|..+.+. .++||+|+.+.+-.... ..|...| .-..+++.+++.|+|||+++
T Consensus 159 ~~v~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~ 235 (276)
T 2b3t_A 159 KNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 235 (276)
T ss_dssp CSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CceEEEEcchhhhcc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 478999999887653 35799999985321000 0111122 23678899999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593 69 SQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as 116 (132)
+..+ +.+.+ .+.+.+++. |..+.... .+ .|.-.+++|.
T Consensus 236 ~~~~--~~~~~---~~~~~l~~~Gf~~v~~~~----d~-~g~~r~~~~~ 274 (276)
T 2b3t_A 236 LEHG--WQQGE---AVRQAFILAGYHDVETCR----DY-GDNERVTLGR 274 (276)
T ss_dssp EECC--SSCHH---HHHHHHHHTTCTTCCEEE----CT-TSSEEEEEEE
T ss_pred EEEC--chHHH---HHHHHHHHCCCcEEEEEe----cC-CCCCcEEEEE
Confidence 8642 23333 344445444 77666532 33 2355556554
No 111
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=96.64 E-value=0.0017 Score=51.11 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=50.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++.+|+.+.+ .+++||+|++|..=.. ......-...++++.+++.|+|||++++-+.. ... ....
T Consensus 276 ~v~~~~~D~~~~~---~~~~fD~Ii~nppfh~--~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~-~~~------~~~~ 343 (375)
T 4dcm_A 276 RCEFMINNALSGV---EPFRFNAVLCNPPFHQ--QHALTDNVAWEMFHHARRCLKINGELYIVANR-HLD------YFHK 343 (375)
T ss_dssp GEEEEECSTTTTC---CTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEET-TSC------HHHH
T ss_pred eEEEEechhhccC---CCCCeeEEEECCCccc--CcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC-CcC------HHHH
Confidence 5677999988754 3468999999854210 00111223458999999999999999873211 111 1356
Q ss_pred HHhhCCCceEe
Q psy4593 88 CASVFPRVAYG 98 (132)
Q Consensus 88 l~~vF~~v~~~ 98 (132)
+++.|.++...
T Consensus 344 l~~~fg~~~~~ 354 (375)
T 4dcm_A 344 LKKIFGNCTTI 354 (375)
T ss_dssp HHHHHSCCEEE
T ss_pred HHHhcCCEEEE
Confidence 77888888764
No 112
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=96.61 E-value=0.011 Score=42.18 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.. ..++||+|++...-. .. ...-..++++.+++.|+|||.+++.
T Consensus 92 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 92 LKVKYIEADYSKYD---FEEKYDMVVSALSIH----HL-EDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp TTEEEEESCTTTCC---CCSCEEEEEEESCGG----GS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCchhccC---CCCCceEEEEeCccc----cC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 37899999986642 227899999864211 11 1111235899999999999999874
No 113
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=47.78 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=40.4
Q ss_pred CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.. .. ..++||+|++|...++ -...+++.+++.|+|||++++.
T Consensus 126 ~~v~~~~~d~~~~~~~~~-~~~~~D~V~~~~~~~~---------~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 126 TNIIPVIEDARHPHKYRM-LIAMVDVIFADVAQPD---------QTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp TTEEEECSCTTCGGGGGG-GCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEEcccCChhhhcc-cCCcEEEEEEcCCCcc---------HHHHHHHHHHHHcCCCeEEEEE
Confidence 67899999987742 22 3468999999875431 1255688899999999999874
No 114
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=96.58 E-value=0.0054 Score=45.95 Aligned_cols=99 Identities=9% Similarity=-0.035 Sum_probs=60.6
Q ss_pred CcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc---ccHHHHHHHHHhcCCCc--EEEEecCCCCCChHH
Q psy4593 8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL---FQASYFELMSRALRPGG--IVCSQAGTLWYSLDC 80 (132)
Q Consensus 8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L---~t~eF~~~~~~~L~p~G--il~~~~~~~~~~~~~ 80 (132)
++.++ .+|+.++ .+++||+|++|.. . ..+...+ -+...++.+++.|+||| .+++..-++. ...
T Consensus 123 ~v~~~~~~~D~~~l----~~~~fD~V~sd~~-~---~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~--~~~ 192 (265)
T 2oxt_A 123 NIVKFKSRVDIHTL----PVERTDVIMCDVG-E---SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY--SVE 192 (265)
T ss_dssp GGEEEECSCCTTTS----CCCCCSEEEECCC-C---CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT--SHH
T ss_pred CeEEEecccCHhHC----CCCCCcEEEEeCc-c---cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC--Chh
Confidence 57777 7887662 3568999999976 2 2211111 01237889999999999 8887542322 223
Q ss_pred HHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 81 VGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
...+++.+++.|..+.+.. ..+.....-.|++|...
T Consensus 193 ~~~~l~~l~~~f~~v~~~k--~~sR~~s~E~y~v~~~~ 228 (265)
T 2oxt_A 193 VMERLSVMQRKWGGGLVRN--PYSRNSTHEMYFTSRAG 228 (265)
T ss_dssp HHHHHHHHHHHHCCEEECC--TTSCTTCCCEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEE--ecccCCCccEEEEecCC
Confidence 4467788888898887643 22233333445565433
No 115
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.58 E-value=0.0094 Score=46.80 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=53.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC---CCCC-Cc-------------ccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR---VVCP-AE-------------SLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~---~~~~-~~-------------~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++++...||+.+-.. ..++||.|++|++=... .... +. .-...+.++.+.+.|+|||.++-
T Consensus 204 ~~v~v~~~D~~~~~~~-~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVY 282 (359)
T 4fzv_A 204 NQVRVTSWDGRKWGEL-EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVY 282 (359)
T ss_dssp SSEEEECCCGGGHHHH-STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CceEEEeCchhhcchh-ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 5788999999998655 56789999999862210 0011 11 11345778888999999999986
Q ss_pred ecCCCCC--ChHHHHHHHHHHH
Q psy4593 70 QAGTLWY--SLDCVGNTLQHCA 89 (132)
Q Consensus 70 ~~~~~~~--~~~~~~~~~~~l~ 89 (132)
-++|... +...+..+++...
T Consensus 283 sTCSl~~~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 283 STCSLSHLQNEYVVQGAIELLA 304 (359)
T ss_dssp EESCCCTTTTHHHHHHHHHHHH
T ss_pred EeCCCchhhCHHHHHHHHHhCC
Confidence 5555443 3445555555443
No 116
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=96.57 E-value=0.0064 Score=45.29 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++++.+|..++ ..+.||+|++-..-.+ -++. --..+++.+++.|+|||++++.
T Consensus 122 ~~~v~~~~~D~~~~----~~~~~d~v~~~~~l~~---~~~~--~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 122 PTPVDVIEGDIRDI----AIENASMVVLNFTLQF---LEPS--ERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp SSCEEEEESCTTTC----CCCSEEEEEEESCGGG---SCHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEeecccccc----cccccccceeeeeeee---cCch--hHhHHHHHHHHHcCCCcEEEEE
Confidence 35788889997553 3356999987543210 1110 1246899999999999999863
No 117
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=96.57 E-value=0.006 Score=42.74 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=40.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++++.+|+.+. .- .+++||+|+....-.+ . . -..++++.+++.|+|||.+++.
T Consensus 92 ~~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 92 NDRIQIVQGDVHNI-PI-EDNYADLIVSRGSVFF--W--E---DVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TTTEEEEECBTTBC-SS-CTTCEEEEEEESCGGG--C--S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCceEEEEcCHHHC-CC-CcccccEEEECchHhh--c--c---CHHHHHHHHHHhCCCCCEEEEE
Confidence 35899999998662 22 4578999998643221 1 1 1367999999999999999875
No 118
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=96.57 E-value=0.014 Score=41.37 Aligned_cols=53 Identities=9% Similarity=-0.000 Sum_probs=36.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc---cHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF---QASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~---t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+. .+.. ..++||+|+....- .++- -..+++.+++.|+|||+++.
T Consensus 84 ~~v~~~~~d~~-~~~~-~~~~fD~V~~~~~l--------~~~~~~~~~~~l~~~~~~LkpgG~~i~ 139 (219)
T 3jwg_A 84 KRISLFQSSLV-YRDK-RFSGYDAATVIEVI--------EHLDENRLQAFEKVLFEFTRPQTVIVS 139 (219)
T ss_dssp TTEEEEECCSS-SCCG-GGTTCSEEEEESCG--------GGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred cceEEEeCccc-cccc-ccCCCCEEEEHHHH--------HhCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 38999999972 2222 34689999964221 1222 25899999999999998875
No 119
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=96.54 E-value=0.0041 Score=46.75 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+. .. +++||+|++...-. ..+..--..++++.+++.|+|||++++..
T Consensus 170 ~~v~~~~~d~~~~-~~--~~~fD~v~~~~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 170 GQITLHRQDAWKL-DT--REGYDLLTSNGLNI----YEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGEEEEECCGGGC-CC--CSCEEEEECCSSGG----GCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CceEEEECchhcC-Cc--cCCeEEEEECChhh----hcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4589999998874 22 37899999743211 11112222458999999999999999753
No 120
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.54 E-value=0.0035 Score=44.24 Aligned_cols=105 Identities=14% Similarity=-0.023 Sum_probs=61.3
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC----------C
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----------S 77 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~----------~ 77 (132)
+++++.+|....- .+++||+|+....-. ..+ .---..+++.+++.|+|||.+++....... .
T Consensus 86 ~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 157 (211)
T 3e23_A 86 GRPVRTMLFHQLD---AIDAYDAVWAHACLL----HVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157 (211)
T ss_dssp TSCCEECCGGGCC---CCSCEEEEEECSCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEEC
T ss_pred CCceEEeeeccCC---CCCcEEEEEecCchh----hcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhcc
Confidence 4566777766532 457899999753211 111 001257899999999999999875311110 0
Q ss_pred hHHHHHHHHHHHhh--CCCceEeEEeccCcCC--CceeEEEeecCCC
Q psy4593 78 LDCVGNTLQHCASV--FPRVAYGATCVPTYPS--GQIGFVLGSQLLK 120 (132)
Q Consensus 78 ~~~~~~~~~~l~~v--F~~v~~~~~~~p~~~~--~~~~f~~as~~~~ 120 (132)
......+.+.+++. |..+.........+.+ ..|-+++..+.+.
T Consensus 158 ~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 158 YPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPEL 204 (211)
T ss_dssp CCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred CCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence 01234555666654 8877776555555544 2366666655543
No 121
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.53 E-value=0.0025 Score=46.34 Aligned_cols=52 Identities=8% Similarity=-0.139 Sum_probs=37.5
Q ss_pred CCCcEEEEccHHH------------------Hhc---CC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC
Q psy4593 6 GYPVLSARQDCTD------------------FMS---GP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP 63 (132)
Q Consensus 6 d~rv~v~~~Dg~~------------------~l~---~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p 63 (132)
..|++++.+|+.+ |.. +. ....||+|++|.--. .+++..+.+.|+|
T Consensus 79 ~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~------------~~~~~~~l~~l~~ 146 (202)
T 3cvo_A 79 GTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR------------VGCALATAFSITR 146 (202)
T ss_dssp TCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH------------HHHHHHHHHHCSS
T ss_pred CCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc------------hhHHHHHHHhcCC
Confidence 4589999999654 331 11 236899999997311 3667778899999
Q ss_pred CcEEEE
Q psy4593 64 GGIVCS 69 (132)
Q Consensus 64 ~Gil~~ 69 (132)
||+++.
T Consensus 147 GG~Iv~ 152 (202)
T 3cvo_A 147 PVTLLF 152 (202)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 999987
No 122
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.51 E-value=0.0011 Score=45.64 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=41.5
Q ss_pred CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHH--HHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELM--SRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+++... ..++||+|+.|.. .. .-...++++.+ ++.|+|||++++..
T Consensus 94 ~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-----~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 94 EKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-----YA---KQEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp GGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-----GG---GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cceEEEECcHHHHHHHHHhcCCCCCEEEECCC-----CC---chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 57999999999986531 2468999999853 11 11235677777 88899999999864
No 123
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0074 Score=40.99 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=38.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+| +.- .+++||+|+....-.+ . . -...+++.+++.|+|||.+++.
T Consensus 59 ~~~v~~~~~d----~~~-~~~~~D~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 59 FDSVITLSDP----KEI-PDNSVDFILFANSFHD--M--D---DKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp CTTSEEESSG----GGS-CTTCEEEEEEESCSTT--C--S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEeCC----CCC-CCCceEEEEEccchhc--c--c---CHHHHHHHHHHhcCCCCEEEEE
Confidence 3688899999 333 5678999997543221 1 1 1368999999999999999875
No 124
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.45 E-value=0.0071 Score=46.82 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=60.7
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCC-CCc--cc-ccHHHHHHHHHhcCCCcEEEEec-CCCCCChHHHHHH
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVC-PAE--SL-FQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNT 84 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~-~~~--~L-~t~eF~~~~~~~L~p~Gil~~~~-~~~~~~~~~~~~~ 84 (132)
..+.+|..+. . ...+||+||+|......+.. .+. .. +-+.-++.+++.|+|||-+++-. ...+ ...
T Consensus 155 ~~IqGD~~~~-~--~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg------~~~ 225 (344)
T 3r24_A 155 STLIGDCATV-H--TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------NAD 225 (344)
T ss_dssp EEEESCGGGE-E--ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------CHH
T ss_pred eEEEcccccc-c--cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC------HHH
Confidence 3488896552 2 24789999999986643221 111 22 35566777999999999999852 2222 133
Q ss_pred HHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117 (132)
Q Consensus 85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~ 117 (132)
+..+++.|..|..+. ..+.....=.|++|..
T Consensus 226 L~~lrk~F~~VK~fK--~ASRa~SsEvYLVG~g 256 (344)
T 3r24_A 226 LYKLMGHFSWWTAFV--TNVNASSSEAFLIGAN 256 (344)
T ss_dssp HHHHHTTEEEEEEEE--EGGGTTSSCEEEEEEE
T ss_pred HHHHHhhCCeEEEEC--CCCCCCCeeEEEEeee
Confidence 556777999998874 2334333445777644
No 125
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=96.42 E-value=0.0018 Score=48.07 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+.... .+++||+|++...-. ..+. ..++++.+++.|+|||++++..
T Consensus 117 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 117 DNMQFIHCAAQDVASH-LETPVDLILFHAVLE----WVAD---PRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGEEEEESCGGGTGGG-CSSCEEEEEEESCGG----GCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEcCHHHhhhh-cCCCceEEEECchhh----cccC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 6789999999886533 468999999754311 1111 2689999999999999998753
No 126
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=45.09 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=51.5
Q ss_pred CCcEEE-EccHHHH-----hcC-CCCCeecEEEEcCCCCCCCCCCCccccc--------HHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSA-RQDCTDF-----MSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQ--------ASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~-~~Dg~~~-----l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t--------~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++.+ .+|.... +.+ ..+++||+|++|..-. .... .... ..+++.+.+.|+|||.+++..
T Consensus 70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~---~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 70 EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPN---ATGF-RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCC---CCSC-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCC---CCCC-cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 467777 7774432 111 1235899999986322 1111 1111 378999999999999999863
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593 72 GTLWYSLDCVGNTLQHCASVFPRVAYG 98 (132)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~ 98 (132)
... .....+.+.+++.|..+...
T Consensus 146 ~~~----~~~~~~~~~l~~~f~~v~~~ 168 (196)
T 2nyu_A 146 WAG----SQSRRLQRRLTEEFQNVRII 168 (196)
T ss_dssp CCS----GGGHHHHHHHHHHEEEEEEE
T ss_pred cCC----ccHHHHHHHHHHHhcceEEE
Confidence 221 22456667777888877664
No 127
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=96.39 E-value=0.002 Score=45.37 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++ . .+++||+|+....-. ..+.. --..+++.+++.|+|||.+++.
T Consensus 90 ~~~~~~~~d~~~~--~-~~~~~D~v~~~~~l~----~~~~~-~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 90 DNVEFRQQDLFDW--T-PDRQWDAVFFAHWLA----HVPDD-RFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp TTEEEEECCTTSC--C-CSSCEEEEEEESCGG----GSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEecccccC--C-CCCceeEEEEechhh----cCCHH-HHHHHHHHHHHHcCCCeEEEEE
Confidence 6799999998776 2 468999999754211 11110 1268899999999999999875
No 128
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=96.36 E-value=0.0027 Score=45.82 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=58.6
Q ss_pred CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe----cCCCCCCh-HH
Q psy4593 7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ----AGTLWYSL-DC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~----~~~~~~~~-~~ 80 (132)
++++.+.+|+.+... .....+||+|+.|..++. ....+++.+++.|+|||.+++- ........ ..
T Consensus 122 ~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 192 (230)
T 1fbn_A 122 ENIIPILGDANKPQEYANIVEKVDVIYEDVAQPN---------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI 192 (230)
T ss_dssp TTEEEEECCTTCGGGGTTTSCCEEEEEECCCSTT---------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHH
T ss_pred CCeEEEECCCCCcccccccCccEEEEEEecCChh---------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHh
Confidence 788999999876221 111268999998875551 2467899999999999999872 11111111 22
Q ss_pred HHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 81 VGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 81 ~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
+...++.|++. |..+... .+..+.. ...++++.+.
T Consensus 193 ~~~~l~~l~~~Gf~~~~~~--~~~~~~~-~~~~v~~~k~ 228 (230)
T 1fbn_A 193 FKEQKEILEAGGFKIVDEV--DIEPFEK-DHVMFVGIWE 228 (230)
T ss_dssp HHHHHHHHHHHTEEEEEEE--ECTTTST-TEEEEEEEEC
T ss_pred hHHHHHHHHHCCCEEEEEE--ccCCCcc-ceEEEEEEeC
Confidence 33334456654 6544432 2333422 3556666653
No 129
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.35 E-value=0.0049 Score=42.30 Aligned_cols=81 Identities=15% Similarity=0.022 Sum_probs=49.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC-CCChHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL-WYSLDCVGNT 84 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~-~~~~~~~~~~ 84 (132)
++++++.+|..+. .- .+++||+|+... .-. ..... -...+++.+++.|+|||.+++..... ... ...+
T Consensus 89 ~~~~~~~~d~~~~-~~-~~~~~D~i~~~~~~~~---~~~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~---~~~~ 158 (195)
T 3cgg_A 89 PEARWVVGDLSVD-QI-SETDFDLIVSAGNVMG---FLAED--GREPALANIHRALGADGRAVIGFGAGRGWV---FGDF 158 (195)
T ss_dssp TTSEEEECCTTTS-CC-CCCCEEEEEECCCCGG---GSCHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCC---HHHH
T ss_pred CCCcEEEcccccC-CC-CCCceeEEEECCcHHh---hcChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcC---HHHH
Confidence 4588889997763 22 357899999862 111 00001 12789999999999999998753221 122 3445
Q ss_pred HHHHHhh-CCCceE
Q psy4593 85 LQHCASV-FPRVAY 97 (132)
Q Consensus 85 ~~~l~~v-F~~v~~ 97 (132)
.+.+++. |.-+..
T Consensus 159 ~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 159 LEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHTEEEEEE
T ss_pred HHHHHHcCCEEeee
Confidence 5555554 654444
No 130
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.33 E-value=0.0042 Score=43.51 Aligned_cols=102 Identities=10% Similarity=-0.079 Sum_probs=59.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC-----C----
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY-----S---- 77 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~-----~---- 77 (132)
++++++.+|+.+.- - .+++||+|+....-.+ . +. ---..+++.+++.|+|||.+++....... .
T Consensus 84 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~~--~-~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 156 (203)
T 3h2b_A 84 PSVTFHHGTITDLS-D-SPKRWAGLLAWYSLIH--M-GP--GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVAT 156 (203)
T ss_dssp TTSEEECCCGGGGG-G-SCCCEEEEEEESSSTT--C-CT--TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSC
T ss_pred CCCeEEeCcccccc-c-CCCCeEEEEehhhHhc--C-CH--HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhh
Confidence 57899999987742 2 4579999998532221 1 11 12378999999999999999875311100 0
Q ss_pred --hHHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593 78 --LDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK 120 (132)
Q Consensus 78 --~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~ 120 (132)
......+.+.+++. |..+.... .+.. .-+++...+..+
T Consensus 157 ~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~---p~~~l~~~~~~~ 197 (203)
T 3h2b_A 157 AYRWPLPELAQALETAGFQVTSSHW--DPRF---PHAYLTAEASLE 197 (203)
T ss_dssp EEECCHHHHHHHHHHTTEEEEEEEE--CTTS---SEEEEEEEECC-
T ss_pred hccCCHHHHHHHHHHCCCcEEEEEe--cCCC---cchhhhhhhhhh
Confidence 01134555666655 66555432 2223 345555555443
No 131
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0036 Score=46.75 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-CChHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-YSLDCVGNTL 85 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-~~~~~~~~~~ 85 (132)
++++++.+|+.++ .. .++||+|++|... -..++++.+.+.|+|||++.+.+.... ...+.....+
T Consensus 169 ~~~~~~~~d~~~~-~~--~~~~D~Vi~d~p~-----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~ 234 (272)
T 3a27_A 169 NNVIPILADNRDV-EL--KDVADRVIMGYVH-----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERL 234 (272)
T ss_dssp SSEEEEESCGGGC-CC--TTCEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHH
T ss_pred CCEEEEECChHHc-Cc--cCCceEEEECCcc-----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHH
Confidence 4688999999987 43 5689999999632 235689999999999999987542211 1123456667
Q ss_pred HHHHhhCC
Q psy4593 86 QHCASVFP 93 (132)
Q Consensus 86 ~~l~~vF~ 93 (132)
+.+.+.+.
T Consensus 235 ~~~~~~~~ 242 (272)
T 3a27_A 235 KFYAEKNG 242 (272)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 77776543
No 132
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.28 E-value=0.0027 Score=44.81 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.+|+.+.... .++||+|+++..-++ .+ +.+++.|+|||.+++....
T Consensus 125 ~~v~~~~~d~~~~~~~--~~~~D~i~~~~~~~~----~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 125 HNVSTRHGDGWQGWQA--RAPFDAIIVTAAPPE----IP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEESSBCSS----CC---------THHHHTEEEEEEEEEEECS
T ss_pred CceEEEECCcccCCcc--CCCccEEEEccchhh----hh---------HHHHHhcccCcEEEEEEcC
Confidence 4799999999885543 468999999865431 11 2578999999999987544
No 133
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=96.21 E-value=0.0041 Score=45.93 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=55.4
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCC--CCC-ChHH
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGT--LWY-SLDC 80 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~--~~~-~~~~ 80 (132)
+++..+.+|+..--.. ...++||+|++|...|. -..-+.+.+++.|+|||.+++- ..+ ... ..+.
T Consensus 125 ~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~---------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~ 195 (232)
T 3id6_C 125 PNIFPLLADARFPQSYKSVVENVDVLYVDIAQPD---------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEI 195 (232)
T ss_dssp TTEEEEECCTTCGGGTTTTCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSS
T ss_pred CCeEEEEcccccchhhhccccceEEEEecCCChh---------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHH
Confidence 6789999998753211 12468999999975441 1233456677799999999864 222 111 1223
Q ss_pred HHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593 81 VGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 81 ~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as 116 (132)
+....+.|++. |.-+. ...+..|..+ -.++++.
T Consensus 196 ~~~~~~~L~~~gf~~~~--~~~l~p~~~~-h~~v~~~ 229 (232)
T 3id6_C 196 YKTEVEKLENSNFETIQ--IINLDPYDKD-HAIVLSK 229 (232)
T ss_dssp TTHHHHHHHHTTEEEEE--EEECTTTCSS-CEEEEEE
T ss_pred HHHHHHHHHHCCCEEEE--EeccCCCcCc-eEEEEEE
Confidence 45667777764 54333 3344445332 3334443
No 134
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=96.21 E-value=0.008 Score=45.74 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
..++||+|++|.. |..+..-..+.-+.+-++.+.+.|+|| |.+++-.-.|+ .+.+..+++.|++.|..|....-
T Consensus 137 ~~~~~DlVlsD~a-pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py--g~~~~~l~~~lk~~F~~V~~~KP-- 211 (277)
T 3evf_A 137 EPVKCDTLLCDIG-ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY--MPDVLEKLELLQRRFGGTVIRNP-- 211 (277)
T ss_dssp CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--SHHHHHHHHHHHHHHCCEEECCT--
T ss_pred CCCCccEEEecCc-cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC--CccHHHHHHHHHHhcCCEEEEeC--
Confidence 4578999999974 311110011222223367889999999 99998532221 34578899999999999987542
Q ss_pred cCcCCCceeEEEeecC
Q psy4593 103 PTYPSGQIGFVLGSQL 118 (132)
Q Consensus 103 p~~~~~~~~f~~as~~ 118 (132)
.+..+..=.|++|-..
T Consensus 212 aSR~~S~E~Y~V~~~r 227 (277)
T 3evf_A 212 LSRNSTHEMYYVSGAR 227 (277)
T ss_dssp TSCTTCCCEEEESSCC
T ss_pred CCCCCCCceEEEEecC
Confidence 4444334456666544
No 135
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.20 E-value=0.0016 Score=44.07 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=40.4
Q ss_pred CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~ 71 (132)
+++++.+|+.+++... ..++||+|+.|.. .. -...++++.+. +.|+|||++++..
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~-----~~----~~~~~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 89 GARVVALPVEVFLPEAKAQGERFTVAFMAPP-----YA----MDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCEEECSCHHHHHHHHHHTTCCEEEEEECCC-----TT----SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ceEEEeccHHHHHHhhhccCCceEEEEECCC-----Cc----hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence 7899999999976531 2348999999852 11 12346777777 9999999999864
No 136
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=96.17 E-value=0.0043 Score=44.94 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=40.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+. .- .+++||+|+....-.+ . --.++++.+++.|+|||.+++..
T Consensus 96 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~------~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 96 DRVKGITGSMDNL-PF-QNEELDLIWSEGAIYN--I------GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp TTEEEEECCTTSC-SS-CTTCEEEEEEESCSCC--C------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CceEEEECChhhC-CC-CCCCEEEEEecChHhh--c------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699999998543 22 4579999998643221 1 24789999999999999998753
No 137
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.17 E-value=0.0021 Score=45.24 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=57.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++.+|+.++ .+++||+|+.+..-. . -.++++.+++.|+|||.+++..... .....+.+.
T Consensus 110 ~v~~~~~d~~~~----~~~~fD~i~~~~~~~--------~--~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~ 171 (205)
T 3grz_A 110 DIALQKTSLLAD----VDGKFDLIVANILAE--------I--LLDLIPQLDSHLNEDGQVIFSGIDY----LQLPKIEQA 171 (205)
T ss_dssp CCEEEESSTTTT----CCSCEEEEEEESCHH--------H--HHHHGGGSGGGEEEEEEEEEEEEEG----GGHHHHHHH
T ss_pred ceEEEecccccc----CCCCceEEEECCcHH--------H--HHHHHHHHHHhcCCCCEEEEEecCc----ccHHHHHHH
Confidence 389999998664 346899999985321 1 2788999999999999999742111 124455566
Q ss_pred HHhh-CCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593 88 CASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN 124 (132)
Q Consensus 88 l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~ 124 (132)
+++. |..+.... .+.|-.++..+.++.+..
T Consensus 172 ~~~~Gf~~~~~~~-------~~~w~~~~~~~~~~~~~~ 202 (205)
T 3grz_A 172 LAENSFQIDLKMR-------AGRWIGLAISRKHEGHHH 202 (205)
T ss_dssp HHHTTEEEEEEEE-------ETTEEEEEEEECC-----
T ss_pred HHHcCCceEEeec-------cCCEEEEEEecccccccc
Confidence 6654 65544322 245766776666654443
No 138
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=96.15 E-value=0.0033 Score=46.16 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=41.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+. .- .+++||+|++...-. ++-..++++.+++.|+|||.+++..
T Consensus 96 ~~v~~~~~d~~~~-~~-~~~~fD~i~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 96 NRVTGIVGSMDDL-PF-RNEELDLIWSEGAIY--------NIGFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp TTEEEEECCTTSC-CC-CTTCEEEEEESSCGG--------GTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCcEEEEcChhhC-CC-CCCCEEEEEEcCCce--------ecCHHHHHHHHHHHcCCCCEEEEEE
Confidence 6799999998653 22 357899999764322 1124789999999999999998753
No 139
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=96.12 E-value=0.00091 Score=48.21 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=38.2
Q ss_pred CCCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++++++.+|+.+.+.- . +++||+|+.. .++ ..+++.+++.|+|||.++.
T Consensus 90 ~~~~~~~~~d~~~~~~~-~~~~~fD~v~~~-~~~------------~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 90 APHADVYEWNGKGELPA-GLGAPFGLIVSR-RGP------------TSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp CTTSEEEECCSCSSCCT-TCCCCEEEEEEE-SCC------------SGGGGGHHHHEEEEEEEEE
T ss_pred CCCceEEEcchhhccCC-cCCCCEEEEEeC-CCH------------HHHHHHHHHHcCCCcEEEE
Confidence 35789999998655543 4 6789999986 233 3457899999999999984
No 140
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.10 E-value=0.017 Score=45.09 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=49.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC--------Ccc----------------cccHHHHHHHHHhcC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP--------AES----------------LFQASYFELMSRALR 62 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~--------~~~----------------L~t~eF~~~~~~~L~ 62 (132)
++++++.+|...+. ..++||+|+.+.+=-. ... ... -.-..|++.+.+.|+
T Consensus 81 ~~~~~~~~D~~~~~---~~~~fD~Ii~NPPy~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk 155 (421)
T 2ih2_A 81 PWAEGILADFLLWE---PGEAFDLILGNPPYGI--VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK 155 (421)
T ss_dssp TTEEEEESCGGGCC---CSSCEEEEEECCCCCC--BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE
T ss_pred CCCcEEeCChhhcC---ccCCCCEEEECcCccC--cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC
Confidence 47899999988763 2468999999853110 111 000 012378999999999
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHHHHhhC
Q psy4593 63 PGGIVCSQAGTLWYSLDCVGNTLQHCASVF 92 (132)
Q Consensus 63 p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF 92 (132)
|||.+++-..+.+........+.+.+.+..
T Consensus 156 ~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~ 185 (421)
T 2ih2_A 156 PGGVLVFVVPATWLVLEDFALLREFLAREG 185 (421)
T ss_dssp EEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred CCCEEEEEEChHHhcCccHHHHHHHHHhcC
Confidence 999988754333332223345555555543
No 141
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=96.10 E-value=0.0043 Score=48.00 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- ..++||+|+.+.... .....-.-..+++.+++.|+|||+++..
T Consensus 115 ~~v~~~~~d~~~~-~~-~~~~fD~Iis~~~~~----~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 115 HVVTIIKGKVEEV-EL-PVEKVDIIISEWMGY----CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TTEEEEESCTTTC-CC-SSSCEEEEEECCCBB----TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred CcEEEEECcHHHc-cC-CCCceEEEEEccccc----cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 5699999998775 22 457999999986422 1112223467899999999999999743
No 142
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=96.05 E-value=0.0071 Score=44.81 Aligned_cols=56 Identities=7% Similarity=-0.119 Sum_probs=39.2
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
.++++++++|+.+.-.. ..++||+|+.-. ... .+.. -...+++.+++.|+|||.++
T Consensus 132 ~~~i~~~~~D~~~l~~~-~~~~FD~V~~~~~l~~-----l~~~-~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 132 SGSISLYCCSIFDLPRA-NIGKFDRIWDRGALVA-----INPG-DHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp TSSEEEEESCTTTGGGG-CCCCEEEEEESSSTTT-----SCGG-GHHHHHHHHHHTEEEEEEEE
T ss_pred CCceEEEECccccCCcc-cCCCEEEEEEhhhhhh-----CCHH-HHHHHHHHHHHHcCCCeEEE
Confidence 47899999998875332 237899999532 221 1111 23578999999999999985
No 143
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=96.01 E-value=0.0044 Score=44.50 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
.++++++.+|+.+.+.. ...||+|+++..-+ .+ .+.+.+.|+|||.+++..+.
T Consensus 144 ~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~--------~~-----~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 144 SGQLLIVEGDGRKGYPP--NAPYNAIHVGAAAP--------DT-----PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HTSEEEEESCGGGCCGG--GCSEEEEEECSCBS--------SC-----CHHHHHTEEEEEEEEEEESC
T ss_pred CCceEEEECCcccCCCc--CCCccEEEECCchH--------HH-----HHHHHHHhcCCCEEEEEEec
Confidence 46789999998873322 36899999886533 11 27889999999999987543
No 144
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0057 Score=47.83 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=41.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.++.. +++||+|+++.... .....-.-..+++.+++.|+|||+++..
T Consensus 112 ~~v~~~~~d~~~~~~---~~~~D~Iv~~~~~~----~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 112 HIVEVIEGSVEDISL---PEKVDVIISEWMGY----FLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TTEEEEESCGGGCCC---SSCEEEEEECCCBT----TBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred CeEEEEECchhhcCc---CCcceEEEEcChhh----cccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 579999999877532 27899999976432 1111222467899999999999999753
No 145
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=95.97 E-value=0.0023 Score=46.32 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=54.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC--------C--
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW--------Y-- 76 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~--------~-- 76 (132)
.+++++.+|+.+.. . .+++||+|+++..-. ..+.. --.++++.+++.|+|||.+++...... .
T Consensus 128 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 200 (241)
T 2ex4_A 128 RVRNYFCCGLQDFT-P-EPDSYDVIWIQWVIG----HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSS 200 (241)
T ss_dssp GEEEEEECCGGGCC-C-CSSCEEEEEEESCGG----GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTE
T ss_pred ceEEEEEcChhhcC-C-CCCCEEEEEEcchhh----hCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCc
Confidence 35788899976543 2 356899999874321 11111 014799999999999999987321000 0
Q ss_pred ChHHHHHHHHHHHhh-CCCceEeEEeccCcCCCc
Q psy4593 77 SLDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQ 109 (132)
Q Consensus 77 ~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~ 109 (132)
.......+.+.+++. |..+... ..+.++.+.
T Consensus 201 ~~~~~~~~~~~l~~aGf~~~~~~--~~~~~~~~~ 232 (241)
T 2ex4_A 201 VCRDLDVVRRIICSAGLSLLAEE--RQENLPDEI 232 (241)
T ss_dssp EEEBHHHHHHHHHHTTCCEEEEE--ECCSCCTTS
T ss_pred ccCCHHHHHHHHHHcCCeEEEee--ecCCCcchh
Confidence 000245566666665 7766643 234455433
No 146
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=95.96 E-value=0.0056 Score=43.40 Aligned_cols=57 Identities=4% Similarity=-0.119 Sum_probs=37.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|.. .+.. ..++||+|++...-. ..+ .---.++++.+++.|+|||+++..
T Consensus 84 ~~v~~~~~d~~-~~~~-~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 84 ERLQLIQGALT-YQDK-RFHGYDAATVIEVIE----HLD-LSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp TTEEEEECCTT-SCCG-GGCSCSEEEEESCGG----GCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cceEEEeCCcc-cccc-cCCCcCEEeeHHHHH----cCC-HHHHHHHHHHHHHHcCCCEEEEEc
Confidence 38999999963 2222 346899999643211 011 001258899999999999988763
No 147
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=95.94 E-value=0.096 Score=35.30 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=51.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
++++++.+|+.+.+.. ++||+|+.+.. -...++++.+++. |||.+++... .......+.+
T Consensus 83 ~~~~~~~~d~~~~~~~---~~~D~i~~~~~-----------~~~~~~l~~~~~~--~gG~l~~~~~----~~~~~~~~~~ 142 (183)
T 2yxd_A 83 KNCQIIKGRAEDVLDK---LEFNKAFIGGT-----------KNIEKIIEILDKK--KINHIVANTI----VLENAAKIIN 142 (183)
T ss_dssp CSEEEEESCHHHHGGG---CCCSEEEECSC-----------SCHHHHHHHHHHT--TCCEEEEEES----CHHHHHHHHH
T ss_pred CcEEEEECCccccccC---CCCcEEEECCc-----------ccHHHHHHHHhhC--CCCEEEEEec----ccccHHHHHH
Confidence 5799999999986544 68999998754 1237889999988 9999998542 2344667777
Q ss_pred HHHhhCCCceE
Q psy4593 87 HCASVFPRVAY 97 (132)
Q Consensus 87 ~l~~vF~~v~~ 97 (132)
.+++..-.+..
T Consensus 143 ~l~~~g~~~~~ 153 (183)
T 2yxd_A 143 EFESRGYNVDA 153 (183)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCCeEEE
Confidence 88776434443
No 148
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=95.93 E-value=0.0037 Score=50.16 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.8
Q ss_pred CCCCcEEEEccHHH--HhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 5 RGYPVLSARQDCTD--FMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~--~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..++++++++|+.+ |+.+. ..++||+|+.|...- . . -...+|+.+++.|+|||++++.
T Consensus 262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~---~--~---d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHI---N--A---HVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCCC---H--H---HHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCcEEEEecccccchhhhhhcccCCccEEEECCccc---c--h---hHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999865 44110 136899999886421 1 1 1367899999999999999984
No 149
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.92 E-value=0.0039 Score=44.21 Aligned_cols=58 Identities=17% Similarity=0.041 Sum_probs=40.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|..+. .- .+++||+|++...-.. ... --..++++.+++.|+|||.+++..
T Consensus 85 ~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~~~~---~~~--~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 85 SNVEFIVGDARKL-SF-EDKTFDYVIFIDSIVH---FEP--LELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp CCCEEEECCTTSC-CS-CTTCEEEEEEESCGGG---CCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEECchhcC-CC-CCCcEEEEEEcCchHh---CCH--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6889999997663 22 3578999997633000 000 112678999999999999998753
No 150
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=95.92 E-value=0.0043 Score=45.58 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=40.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.. - .+++||+|+....-.+ . +. ...+++.+++.|+|||++++.
T Consensus 87 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~~--~--~~---~~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 87 KNVKFLQANIFSLP-F-EDSSFDHIFVCFVLEH--L--QS---PEEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp CSEEEEECCGGGCC-S-CTTCEEEEEEESCGGG--C--SC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEEcccccCC-C-CCCCeeEEEEechhhh--c--CC---HHHHHHHHHHHcCCCcEEEEE
Confidence 57899999988643 2 4579999997643221 1 11 258999999999999999874
No 151
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.90 E-value=0.0052 Score=43.41 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC-----CCCChHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCV 81 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~-----~~~~~~~~ 81 (132)
++++++.+|+.++. .+++||+|++...-. ..+..---..+++.+++.|+|||++++.... .|......
T Consensus 97 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 169 (216)
T 3ofk_A 97 SHISWAATDILQFS---TAELFDLIVVAEVLY----YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA 169 (216)
T ss_dssp SSEEEEECCTTTCC---CSCCEEEEEEESCGG----GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCH
T ss_pred CCeEEEEcchhhCC---CCCCccEEEEccHHH----hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhH
Confidence 58899999987754 357899999853211 1110001147799999999999999974211 12221123
Q ss_pred HHHHHHHHhhCCCceEeEE
Q psy4593 82 GNTLQHCASVFPRVAYGAT 100 (132)
Q Consensus 82 ~~~~~~l~~vF~~v~~~~~ 100 (132)
..+.+.+.+.+..+.....
T Consensus 170 ~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 170 ETVITILTEALTEVERVQC 188 (216)
T ss_dssp HHHHHHHHHHSEEEEEEEE
T ss_pred HHHHHHHHhhccceEEEec
Confidence 4455666677776654333
No 152
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.89 E-value=0.017 Score=42.54 Aligned_cols=84 Identities=15% Similarity=0.035 Sum_probs=56.1
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHH
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 88 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l 88 (132)
++++.+|+.+.+.. ++||+|+.+.... . -.++++.+++.|+|||.+++.... ......+.+.+
T Consensus 169 v~~~~~d~~~~~~~---~~fD~Vv~n~~~~--------~--~~~~l~~~~~~LkpgG~lils~~~----~~~~~~v~~~l 231 (254)
T 2nxc_A 169 PRFLEGSLEAALPF---GPFDLLVANLYAE--------L--HAALAPRYREALVPGGRALLTGIL----KDRAPLVREAM 231 (254)
T ss_dssp CEEEESCHHHHGGG---CCEEEEEEECCHH--------H--HHHHHHHHHHHEEEEEEEEEEEEE----GGGHHHHHHHH
T ss_pred EEEEECChhhcCcC---CCCCEEEECCcHH--------H--HHHHHHHHHHHcCCCCEEEEEeec----cCCHHHHHHHH
Confidence 78899999887533 5799999874311 1 268899999999999999974211 11245666677
Q ss_pred Hhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593 89 ASV-FPRVAYGATCVPTYPSGQIGFVLGS 116 (132)
Q Consensus 89 ~~v-F~~v~~~~~~~p~~~~~~~~f~~as 116 (132)
++. |..+.... .+.|..+++.
T Consensus 232 ~~~Gf~~~~~~~-------~~~W~~l~~~ 253 (254)
T 2nxc_A 232 AGAGFRPLEEAA-------EGEWVLLAYG 253 (254)
T ss_dssp HHTTCEEEEEEE-------ETTEEEEEEE
T ss_pred HHCCCEEEEEec-------cCCeEEEEEE
Confidence 765 76554422 2457666554
No 153
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=95.89 E-value=0.0053 Score=43.81 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=39.7
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH-HhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS-RALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~-~~L~p~Gil~~~~ 71 (132)
+++++.+|+.+. . .+++||+|++-..-. ..+. ...+++.++ +.|+|||.+++..
T Consensus 87 ~v~~~~~d~~~~--~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 87 GITYIHSRFEDA--Q-LPRRYDNIVLTHVLE----HIDD---PVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp CEEEEESCGGGC--C-CSSCEEEEEEESCGG----GCSS---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CeEEEEccHHHc--C-cCCcccEEEEhhHHH----hhcC---HHHHHHHHHHHhcCCCCEEEEEc
Confidence 789999998876 2 457899999643211 1111 268999999 9999999998754
No 154
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=95.87 E-value=0.012 Score=44.28 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=57.6
Q ss_pred CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-CCCCCChHH
Q psy4593 6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDC 80 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-~~~~~~~~~ 80 (132)
+++++++.+|+.+-|.+. ...++|+|.+|+-- .--+.+.|+.+..+|+|||+++.-- ..+..
T Consensus 157 ~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~---------Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w---- 223 (257)
T 3tos_A 157 TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL---------YEPTKAVLEAIRPYLTKGSIVAFDELDNPKW---- 223 (257)
T ss_dssp CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC---------HHHHHHHHHHHGGGEEEEEEEEESSTTCTTC----
T ss_pred CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc---------cchHHHHHHHHHHHhCCCcEEEEcCCCCCCC----
Confidence 589999999999987541 34579999999821 1125778999999999999999842 22111
Q ss_pred HHHHHHHHHhhCCCceEeEEeccCcCC
Q psy4593 81 VGNTLQHCASVFPRVAYGATCVPTYPS 107 (132)
Q Consensus 81 ~~~~~~~l~~vF~~v~~~~~~~p~~~~ 107 (132)
....+.+.+.+..-..-....|.++.
T Consensus 224 -~G~~~A~~ef~~~~~~~i~~~p~~~~ 249 (257)
T 3tos_A 224 -PGENIAMRKVLGLDHAPLRLLPGRPA 249 (257)
T ss_dssp -THHHHHHHHHTCTTSSCCEECTTCSC
T ss_pred -hHHHHHHHHHHhhCCCeEEEccCCCC
Confidence 13344455555433332334677654
No 155
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=95.86 E-value=0.0043 Score=44.92 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=38.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.. .+++||+|++- +... .+. -..+++.+++.|+|||.+++.
T Consensus 86 ~~v~~~~~d~~~~~---~~~~fD~V~~~~~~~~-----~~~---~~~~l~~~~r~LkpgG~l~~~ 139 (256)
T 1nkv_A 86 ERVHFIHNDAAGYV---ANEKCDVAACVGATWI-----AGG---FAGAEELLAQSLKPGGIMLIG 139 (256)
T ss_dssp TTEEEEESCCTTCC---CSSCEEEEEEESCGGG-----TSS---SHHHHHHHTTSEEEEEEEEEE
T ss_pred cceEEEECChHhCC---cCCCCCEEEECCChHh-----cCC---HHHHHHHHHHHcCCCeEEEEe
Confidence 57999999987642 25789999972 2211 111 378899999999999999874
No 156
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=95.83 E-value=0.024 Score=39.92 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=58.2
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC-CCChHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL-WYSLDCVGNTLQ 86 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~-~~~~~~~~~~~~ 86 (132)
+++++.+|+.+ +.- .+++||+|++...-. .--..++++.+++.|+|||.+++..... +.. ...+.+
T Consensus 98 ~~~~~~~d~~~-~~~-~~~~fD~v~~~~~l~--------~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~---~~~~~~ 164 (215)
T 2zfu_A 98 DPRVTVCDMAQ-VPL-EDESVDVAVFCLSLM--------GTNIRDFLEEANRVLKPGGLLKVAEVSSRFED---VRTFLR 164 (215)
T ss_dssp STTEEESCTTS-CSC-CTTCEEEEEEESCCC--------SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSC---HHHHHH
T ss_pred CceEEEecccc-CCC-CCCCEeEEEEehhcc--------ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCC---HHHHHH
Confidence 56778888765 222 457899999743211 1123789999999999999998742111 112 344555
Q ss_pred HHHhh-CCCceEeEEeccCcCCCceeEEEeecCCCccc
Q psy4593 87 HCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLKQHA 123 (132)
Q Consensus 87 ~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~ 123 (132)
.+++. |..+... ..++.+.++++.+....+.
T Consensus 165 ~l~~~Gf~~~~~~------~~~~~~~~~~~~k~~~~~~ 196 (215)
T 2zfu_A 165 AVTKLGFKIVSKD------LTNSHFFLFDFQKTGPPLV 196 (215)
T ss_dssp HHHHTTEEEEEEE------CCSTTCEEEEEEECSSCSS
T ss_pred HHHHCCCEEEEEe------cCCCeEEEEEEEecCcccc
Confidence 56554 6544321 1234567777777655444
No 157
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=95.81 E-value=0.007 Score=47.25 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCCCCcEEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 4 YRGYPVLSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 4 ~~d~rv~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+..++++++.+|+.+... ...+++||+|+....-. ..+. -..+++.+++.|+|||++++.
T Consensus 139 ~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~----~~~d---~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN----LSTN---KLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGG----GCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchh----cCCC---HHHHHHHHHHHcCCCCEEEEE
Confidence 445899999999877521 11457899999865322 1111 368999999999999999874
No 158
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=95.80 E-value=0.016 Score=44.59 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=42.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--ccc--ccHHHHHHHHHhcCCCcEEEEec
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--ESL--FQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~~L--~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++.+|+.++... ...||+|++|.+=. .... ..+ .-.++++.+++.|+|||.+++-+
T Consensus 255 ~i~~~~~D~~~~~~~--~~~~D~Ii~npPyg---~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 255 WIRFLRADARHLPRF--FPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp TCEEEECCGGGGGGT--CCCCSEEEECCCSC---C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ceEEEeCChhhCccc--cCCCCEEEECCCCc---CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 789999999987544 35689999997422 1111 111 12678999999999999999864
No 159
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=95.80 E-value=0.0093 Score=42.13 Aligned_cols=56 Identities=16% Similarity=0.007 Sum_probs=38.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++ .. . ++||+|++...-. ..+ ..-...+++.+++.|+|||.+++.
T Consensus 89 ~~~~~~~~d~~~~-~~-~-~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 89 KEFSITEGDFLSF-EV-P-TSIDTIVSTYAFH----HLT-DDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp TTCCEESCCSSSC-CC-C-SCCSEEEEESCGG----GSC-HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CceEEEeCChhhc-CC-C-CCeEEEEECcchh----cCC-hHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4788888887764 22 2 7899999864211 111 111244899999999999999986
No 160
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=95.78 E-value=0.0073 Score=46.26 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=40.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+.+. .- ..++||+|+.+.... .....-.-..+++.+++.|+|||+++.
T Consensus 87 ~~i~~~~~d~~~~-~~-~~~~~D~Ivs~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 87 DKITLLRGKLEDV-HL-PFPKVDIIISEWMGY----FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTEEEEESCTTTS-CC-SSSCEEEEEECCCBT----TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCEEEEECchhhc-cC-CCCcccEEEEeCchh----hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5789999998764 22 347899999985432 111112235788999999999999973
No 161
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=95.75 E-value=0.0053 Score=44.48 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=40.4
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|+.+. .- .+++||+|++...-.+ .+ -...+++.+++.|+|||.+++.
T Consensus 85 ~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~----~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 85 DRKVQVVQADARAI-PL-PDESVHGVIVVHLWHL----VP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CTTEEEEESCTTSC-CS-CTTCEEEEEEESCGGG----CT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEcccccC-CC-CCCCeeEEEECCchhh----cC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 47899999998653 22 4578999997533111 11 1368999999999999999875
No 162
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=95.74 E-value=0.0095 Score=44.09 Aligned_cols=90 Identities=10% Similarity=-0.020 Sum_probs=59.0
Q ss_pred CCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCCC---CChH
Q psy4593 6 GYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTLW---YSLD 79 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~~---~~~~ 79 (132)
.+++..+.+|+..--.. ...+.+|+|++|...|+ -...+++.+++.|+|||.+++- ..+.. ....
T Consensus 125 ~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~---------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~ 195 (233)
T 4df3_A 125 RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPE---------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE 195 (233)
T ss_dssp CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH
T ss_pred hcCeeEEEEeccCccccccccceEEEEEEeccCCh---------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH
Confidence 46788888888764322 14578999999987662 1367899999999999998863 21110 1234
Q ss_pred HHHHHHHHHHhh-CCCceEeEEeccCcC
Q psy4593 80 CVGNTLQHCASV-FPRVAYGATCVPTYP 106 (132)
Q Consensus 80 ~~~~~~~~l~~v-F~~v~~~~~~~p~~~ 106 (132)
.+....+.|++. |.-+.. .....|+
T Consensus 196 ~~~~ev~~L~~~GF~l~e~--i~L~pf~ 221 (233)
T 4df3_A 196 VYKREIKTLMDGGLEIKDV--VHLDPFD 221 (233)
T ss_dssp HHHHHHHHHHHTTCCEEEE--EECTTTS
T ss_pred HHHHHHHHHHHCCCEEEEE--EccCCCC
Confidence 567777888765 765543 2344454
No 163
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=95.68 E-value=0.016 Score=44.53 Aligned_cols=90 Identities=9% Similarity=-0.059 Sum_probs=57.8
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
....+|+|++|.. |..+.....+.-+.+-++.+.+.|+|| |.+++-.=.++ .+....+++.|++.|..|....-
T Consensus 144 ~~~~~DlVlsD~A-PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y--G~~~~~ll~~lk~~F~~V~~~KP-- 218 (300)
T 3eld_A 144 PTEPSDTLLCDIG-ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY--HPDVIEKLERLQLRFGGGIVRVP-- 218 (300)
T ss_dssp CCCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT--SHHHHHHHHHHHHHHCCEEECCT--
T ss_pred CCCCcCEEeecCc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc--CccHHHHHHHHHHhCCcEEEEeC--
Confidence 4578999999975 311111112223334477889999999 99998631111 45678899999999999987532
Q ss_pred cCcCCCceeEEEeecC
Q psy4593 103 PTYPSGQIGFVLGSQL 118 (132)
Q Consensus 103 p~~~~~~~~f~~as~~ 118 (132)
.+..+..=.|++|-..
T Consensus 219 aSR~~S~E~Y~V~~~r 234 (300)
T 3eld_A 219 FSRNSTHEMYYISGAR 234 (300)
T ss_dssp TSCTTCCCEEEESSCC
T ss_pred CCCCCChHHeeeccCC
Confidence 4444444456666544
No 164
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=95.68 E-value=0.0092 Score=43.62 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=39.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+.- +... . +. ...+++.+++.|+|||.+++.
T Consensus 111 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~---~--~~---~~~~l~~~~~~L~pgG~l~i~ 165 (273)
T 3bus_A 111 NRVTFSYADAMDL-PF-EDASFDAVWALESLHH---M--PD---RGRALREMARVLRPGGTVAIA 165 (273)
T ss_dssp TTEEEEECCTTSC-CS-CTTCEEEEEEESCTTT---S--SC---HHHHHHHHHTTEEEEEEEEEE
T ss_pred cceEEEECccccC-CC-CCCCccEEEEechhhh---C--CC---HHHHHHHHHHHcCCCeEEEEE
Confidence 5789999998662 22 45789999963 3322 1 11 278999999999999999875
No 165
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=95.67 E-value=0.0067 Score=44.20 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=36.8
Q ss_pred EEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCC-CC---cccccHHHHHHHHHhcCCCcEEEE
Q psy4593 11 SARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVC-PA---ESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 11 v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~-~~---~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++.+|..+.+... ...+||+|+++..--. .. .. ..-.-..+++.+++.|+|||++++
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGE--RTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGG--SSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eeecccccccccccccCCCCceEEEeCCCeec--cccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 8889987755210 1247999999852100 01 00 012235889999999999999997
No 166
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=95.65 E-value=0.006 Score=43.09 Aligned_cols=97 Identities=6% Similarity=-0.168 Sum_probs=58.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC--------CCh
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW--------YSL 78 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~--------~~~ 78 (132)
++++++.+|+.+.- - .+++||+|+....-. ..+ -...+++.+++.|+|||.+++...... ...
T Consensus 88 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 158 (219)
T 3dh0_A 88 KNVEVLKSEENKIP-L-PDNTVDFIFMAFTFH----ELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEV 158 (219)
T ss_dssp TTEEEEECBTTBCS-S-CSSCEEEEEEESCGG----GCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGS
T ss_pred CcEEEEecccccCC-C-CCCCeeEEEeehhhh----hcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcc
Confidence 47899999976532 2 457899999764321 111 137899999999999999987421110 000
Q ss_pred HHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecC
Q psy4593 79 DCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 79 ~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~ 118 (132)
-....+.+.+++. |..+..... ++.+-++++.+.
T Consensus 159 ~~~~~~~~~l~~~Gf~~~~~~~~------~~~~~~~~~~k~ 193 (219)
T 3dh0_A 159 YSEWEVGLILEDAGIRVGRVVEV------GKYCFGVYAMIV 193 (219)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEE------TTTEEEEEEECC
T ss_pred cCHHHHHHHHHHCCCEEEEEEee------CCceEEEEEEec
Confidence 0135566666665 776665322 124445666654
No 167
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=95.65 E-value=0.0067 Score=46.10 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=38.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.+|+.+.+.. .++||+|+++..-.+ .+ +.+++.|+|||++++....
T Consensus 126 ~~v~~~~~d~~~~~~~--~~~fD~Iv~~~~~~~----~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 126 ENVIFVCGDGYYGVPE--FSPYDVIFVTVGVDE----VP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEECSBBSC----CC---------HHHHHHEEEEEEEEEEBCB
T ss_pred CCeEEEECChhhcccc--CCCeEEEEEcCCHHH----HH---------HHHHHhcCCCcEEEEEECC
Confidence 4589999999875543 367999999864331 11 5788899999999987533
No 168
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=95.64 E-value=0.0062 Score=44.08 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.++. .+++||+|+....-.+ . + -...+++.+++.|+|||.+++..
T Consensus 78 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 78 PNTNFGKADLATWK---PAQKADLLYANAVFQW--V--P---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp TTSEEEECCTTTCC---CSSCEEEEEEESCGGG--S--T---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCcEEEECChhhcC---ccCCcCEEEEeCchhh--C--C---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 57899999987643 3578999998543221 1 1 13688999999999999999864
No 169
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.025 Score=38.87 Aligned_cols=85 Identities=8% Similarity=-0.050 Sum_probs=51.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
.++++++.+|+.+.+. +++||+|+.+..=-+ .... ..--..++++.+.+.| |||.+++-.... .. .
T Consensus 60 ~~~~~~~~~d~~~~~~---~~~fD~i~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-~~---~ 129 (170)
T 3q87_B 60 HRGGNLVRADLLCSIN---QESVDVVVFNPPYVP--DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-NR---P 129 (170)
T ss_dssp CSSSCEEECSTTTTBC---GGGCSEEEECCCCBT--TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-GC---H
T ss_pred ccCCeEEECChhhhcc---cCCCCEEEECCCCcc--CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-CC---H
Confidence 3678999999877433 378999999743110 1111 1112357888988889 999998743121 12 3
Q ss_pred HHHHHHHHhh-CCCceEeEE
Q psy4593 82 GNTLQHCASV-FPRVAYGAT 100 (132)
Q Consensus 82 ~~~~~~l~~v-F~~v~~~~~ 100 (132)
..+.+.+++. |..+.+...
T Consensus 130 ~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 130 KEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEee
Confidence 4555666654 766555443
No 170
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=95.61 E-value=0.0096 Score=43.11 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=41.3
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|+.+. .- .+++||+|+....-. ... . -.++++.+++.|+|||.+++.
T Consensus 89 ~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~-~--~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 89 SPVVCYEQKAIEDI-AI-EPDAYNVVLSSLALH----YIA-S--FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CTTEEEEECCGGGC-CC-CTTCEEEEEEESCGG----GCS-C--HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCeEEEEcchhhC-CC-CCCCeEEEEEchhhh----hhh-h--HHHHHHHHHHHcCCCcEEEEE
Confidence 57899999998653 22 468999999754211 111 1 378999999999999999985
No 171
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=95.61 E-value=0.0041 Score=45.91 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+.-.. .+++||+|++...-. ......--..++++.+++.|+|||.+++..
T Consensus 114 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 114 FKVFFRAQDSYGRHMD-LGKEFDVISSQFSFH---YAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp SEEEEEESCTTTSCCC-CSSCEEEEEEESCGG---GGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEEECCccccccC-CCCCcCEEEECchhh---hhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4688999998764221 357899999864211 000001113679999999999999999864
No 172
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=95.60 E-value=0.0085 Score=46.22 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=40.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
++++++.+|+.++ .- .+++||+|+.+.... .....-.-.++++.+++.|+|||+++
T Consensus 113 ~~i~~~~~d~~~~-~~-~~~~~D~Ivs~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 113 DTITLIKGKIEEV-HL-PVEKVDVIISEWMGY----FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTEEEEESCTTTS-CC-SCSCEEEEEECCCBT----TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEeeHHHh-cC-CCCcEEEEEEcCchh----hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 6899999998764 22 347899999875311 11111223578999999999999997
No 173
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=95.56 E-value=0.0093 Score=44.30 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=39.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+.- +... .+. -..+++.+++.|+|||.+++.
T Consensus 132 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~-----~~~---~~~~l~~~~~~LkpgG~l~~~ 186 (297)
T 2o57_A 132 DNITVKYGSFLEI-PC-EDNSYDFIWSQDAFLH-----SPD---KLKVFQECARVLKPRGVMAIT 186 (297)
T ss_dssp TTEEEEECCTTSC-SS-CTTCEEEEEEESCGGG-----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEEEcCcccC-CC-CCCCEeEEEecchhhh-----cCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 6789999997652 22 35789999974 3221 111 378999999999999999875
No 174
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=95.53 E-value=0.0092 Score=41.95 Aligned_cols=56 Identities=16% Similarity=-0.011 Sum_probs=39.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+. .- .+++||+|+....-.+ . + -..++++.+++.|+|||.+++..
T Consensus 77 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 77 PEATWVRAWGEAL-PF-PGESFDVVLLFTTLEF--V--E---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp TTSEEECCCTTSC-CS-CSSCEEEEEEESCTTT--C--S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEcccccC-CC-CCCcEEEEEEcChhhh--c--C---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 5778888887653 22 4578999997543221 1 1 13689999999999999998753
No 175
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=95.48 E-value=0.0095 Score=45.42 Aligned_cols=90 Identities=7% Similarity=-0.067 Sum_probs=57.6
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC--cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEe
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG--GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~ 101 (132)
...++|+|++|..-. .+.....+.-+.+-++.+.+.|+|| |.+++-.-.++ .+....+++.|++.|..|....-
T Consensus 153 ~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py--g~~~~~l~~~lk~~F~~V~~~KP- 228 (282)
T 3gcz_A 153 EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY--TPLIMEELSRLQLKHGGGLVRVP- 228 (282)
T ss_dssp CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC--SHHHHHHHHHHHHHHCCEEECCT-
T ss_pred CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC--CccHHHHHHHHHHhcCCEEEEcC-
Confidence 457899999997522 1111112333334477788999999 99998531111 45678899999999999987542
Q ss_pred ccCcCCCceeEEEeecC
Q psy4593 102 VPTYPSGQIGFVLGSQL 118 (132)
Q Consensus 102 ~p~~~~~~~~f~~as~~ 118 (132)
.+..+..=.|++|-..
T Consensus 229 -aSR~~S~E~Y~V~~~r 244 (282)
T 3gcz_A 229 -LSRNSTHEMYWVSGTR 244 (282)
T ss_dssp -TSCTTCCCEEEETTCC
T ss_pred -CCcccCcceeEEEecC
Confidence 4444334456666444
No 176
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=95.45 E-value=0.0075 Score=43.94 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+....-.+ .+. -..+++.+++.|+|||.+++.
T Consensus 85 ~~v~~~~~d~~~l-~~-~~~~fD~V~~~~~l~~----~~d---~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 85 QQVEYVQGDAEQM-PF-TDERFHIVTCRIAAHH----FPN---PASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CSEEEEECCC-CC-CS-CTTCEEEEEEESCGGG----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEecHHhC-CC-CCCCEEEEEEhhhhHh----cCC---HHHHHHHHHHHcCCCCEEEEE
Confidence 5789999997652 22 4578999997632211 111 258999999999999999874
No 177
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=95.45 E-value=0.012 Score=40.73 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|..+.- .+++||+|+....-.+ -+. --..++++.+++.|+|||.+++
T Consensus 80 ~~~~~~~~d~~~~~---~~~~~D~v~~~~~l~~---~~~--~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 80 DNLHTRVVDLNNLT---FDRQYDFILSTVVLMF---LEA--KTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp TTEEEEECCGGGCC---CCCCEEEEEEESCGGG---SCG--GGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcEEEEcchhhCC---CCCCceEEEEcchhhh---CCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 46899999987642 2578999997643211 111 1237899999999999999764
No 178
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=95.44 E-value=0.0055 Score=43.77 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=38.4
Q ss_pred CCCcEEEEccHHHHhc---CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMS---GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~---~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.++++++.+|+.+... . ...+||+|+++..-+ . +++.+++.|+|||++++..
T Consensus 139 ~~~v~~~~~d~~~~~~~~~~-~~~~fD~I~~~~~~~--------~-----~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 139 IDNFKIIHKNIYQVNEEEKK-ELGLFDAIHVGASAS--------E-----LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp STTEEEEECCGGGCCHHHHH-HHCCEEEEEECSBBS--------S-----CCHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEEECChHhcccccCc-cCCCcCEEEECCchH--------H-----HHHHHHHhcCCCcEEEEEE
Confidence 5689999999887430 1 235799999886433 1 2478899999999999864
No 179
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=95.43 E-value=0.017 Score=42.62 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.++ . .+++||+|++...-. ..+ -...+++.+++.|+|||.+++..
T Consensus 100 ~~~~~~~~d~~~~-~--~~~~fD~v~~~~~l~----~~~---d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 100 PHLHFDVADARNF-R--VDKPLDAVFSNAMLH----WVK---EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp TTSCEEECCTTTC-C--CSSCEEEEEEESCGG----GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECChhhC-C--cCCCcCEEEEcchhh----hCc---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 5788899998763 2 246899999753211 111 13588999999999999998753
No 180
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=95.41 E-value=0.011 Score=43.62 Aligned_cols=54 Identities=15% Similarity=-0.038 Sum_probs=38.6
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+++++.+|+.+... +++||+|+....-.+ .. .-....+++.+++.|+|||++++
T Consensus 168 ~~~~~~~d~~~~~~---~~~fD~i~~~~~~~~---~~--~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 168 NISTALYDINAANI---QENYDFIVSTVVFMF---LN--RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp CEEEEECCGGGCCC---CSCEEEEEECSSGGG---SC--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEEeccccccc---cCCccEEEEccchhh---CC--HHHHHHHHHHHHHhcCCCcEEEE
Confidence 78899999876432 578999998653211 11 11235899999999999999665
No 181
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=95.40 E-value=0.0082 Score=45.22 Aligned_cols=54 Identities=19% Similarity=0.018 Sum_probs=39.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+.-..-. ... -.++++.+++.|+|||.+++.
T Consensus 167 ~~v~~~~~d~~~~-~~-~~~~fD~V~~~~~l~----~~~----~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 167 DHVRSRVCNMLDT-PF-DKGAVTASWNNESTM----YVD----LHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp TTEEEEECCTTSC-CC-CTTCEEEEEEESCGG----GSC----HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECChhcC-CC-CCCCEeEEEECCchh----hCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 5799999998653 22 457999999742211 111 689999999999999999864
No 182
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=95.40 E-value=0.0096 Score=43.01 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=39.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+ +.- .+++||+|+....-.+ . +. -..+++.+++.|+|||.+++.
T Consensus 69 ~~v~~~~~d~~~-~~~-~~~~fD~v~~~~~l~~--~--~~---~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 69 ENVRFQQGTAES-LPF-PDDSFDIITCRYAAHH--F--SD---VRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp CSEEEEECBTTB-CCS-CTTCEEEEEEESCGGG--C--SC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEeccccc-CCC-CCCcEEEEEECCchhh--c--cC---HHHHHHHHHHHcCCCcEEEEE
Confidence 578899999765 222 4578999997632111 1 11 268999999999999999874
No 183
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=95.37 E-value=0.0081 Score=43.11 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=50.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC--------CCCCh
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT--------LWYSL 78 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~--------~~~~~ 78 (132)
.+++++.+|+.++. .+.+||+|+.-..-.. . + .--...+++.+++.|+|||.+++.... ++..
T Consensus 115 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~-~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~- 185 (235)
T 3lcc_A 115 EYFSFVKEDVFTWR---PTELFDLIFDYVFFCA--I-E--PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKV- 185 (235)
T ss_dssp GGEEEECCCTTTCC---CSSCEEEEEEESSTTT--S-C--GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCC-
T ss_pred cceEEEECchhcCC---CCCCeeEEEEChhhhc--C-C--HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccC-
Confidence 46889999987743 3458999996432110 1 1 112478999999999999999864211 1111
Q ss_pred HHHHHHHHHHHhh-CCCceE
Q psy4593 79 DCVGNTLQHCASV-FPRVAY 97 (132)
Q Consensus 79 ~~~~~~~~~l~~v-F~~v~~ 97 (132)
....+.+.+++. |..+.+
T Consensus 186 -~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 186 -DVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp -CHHHHHHHHGGGTEEEEEE
T ss_pred -CHHHHHHHHHHcCCeEEEE
Confidence 134555666665 766554
No 184
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=95.36 E-value=0.0082 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=40.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+....-.+ .. . ---..+++.+++.|+|||.+++.
T Consensus 102 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~~-~--~~~~~~l~~~~~~L~pgG~l~~~ 158 (266)
T 3ujc_A 102 NKIIFEANDILTK-EF-PENNFDLIYSRDAILA--LS-L--ENKNKLFQKCYKWLKPTGTLLIT 158 (266)
T ss_dssp TTEEEEECCTTTC-CC-CTTCEEEEEEESCGGG--SC-H--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEECccccC-CC-CCCcEEEEeHHHHHHh--cC-h--HHHHHHHHHHHHHcCCCCEEEEE
Confidence 7899999998764 22 4679999997532111 11 0 12378899999999999999875
No 185
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=95.35 E-value=0.027 Score=41.54 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=39.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++++++.+|..++ . ++||+|+.-. ... ... ---.++++.+++.|+|||.+++..
T Consensus 113 ~~~~~~~~~d~~~~----~-~~fD~v~~~~~l~~---~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 113 LRSKRVLLAGWEQF----D-EPVDRIVSIGAFEH---FGH---ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CSCEEEEESCGGGC----C-CCCSEEEEESCGGG---TCT---TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEECChhhC----C-CCeeEEEEeCchhh---cCh---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 35889999997542 2 7899999642 221 111 123789999999999999998753
No 186
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=95.33 E-value=0.011 Score=42.21 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=41.4
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..++++++.+|+.+. .- .+++||+|+.-..-.+ . + -...+++.+++.|+|||.+++..
T Consensus 96 ~~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 96 EGPDLSFIKGDLSSL-PF-ENEQFEAIMAINSLEW--T--E---EPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp CBTTEEEEECBTTBC-SS-CTTCEEEEEEESCTTS--S--S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEcchhcC-CC-CCCCccEEEEcChHhh--c--c---CHHHHHHHHHHHhCCCeEEEEEE
Confidence 357899999998763 22 4679999997432221 1 1 12588999999999999998753
No 187
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=95.31 E-value=0.015 Score=41.49 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++++.+|+.+.- - .+++||+|+....-. ..+ --..+++.+++.|+|||.+++.
T Consensus 88 ~~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 88 DTGITYERADLDKLH-L-PQDSFDLAYSSLALH----YVE---DVARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp SSSEEEEECCGGGCC-C-CTTCEEEEEEESCGG----GCS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCceEEEcChhhcc-C-CCCCceEEEEecccc----ccc---hHHHHHHHHHHhcCcCcEEEEE
Confidence 357899999987742 2 457899999753211 111 1368999999999999999874
No 188
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=95.30 E-value=0.0065 Score=44.34 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=39.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++- .+++||+|++.. .-. ..+..---..+++.+++.|+|||.+++.
T Consensus 93 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 93 PDAVLHHGDMRDFS---LGRRFSAVTCMFSSIG----HLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TTSEEEECCTTTCC---CSCCEEEEEECTTGGG----GSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECChHHCC---ccCCcCEEEEcCchhh----hcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 37889999987642 257899999853 111 1111112357899999999999999984
No 189
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=95.30 E-value=0.018 Score=43.25 Aligned_cols=55 Identities=16% Similarity=0.043 Sum_probs=38.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|..+. +++||+|+....-.+ .+ . ---.++++.+++.|+|||.+++..
T Consensus 140 ~~v~~~~~d~~~~-----~~~fD~v~~~~~l~~--~~-~--~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 140 RSRQVLLQGWEDF-----AEPVDRIVSIEAFEH--FG-H--ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp SCEEEEESCGGGC-----CCCCSEEEEESCGGG--TC-G--GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CceEEEECChHHC-----CCCcCEEEEeChHHh--cC-H--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5789999997553 368999996532110 11 0 123789999999999999999763
No 190
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=95.29 E-value=0.051 Score=41.08 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=48.2
Q ss_pred cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~~~~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
|.++ - ...++|+|++|.--. .+.....+.-+..-++.+.+.|+||| .+++-.=. ...+.+.+.++.+++.|.
T Consensus 131 Df~~---~-~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq--g~~~~~~~~l~~lk~~F~ 203 (269)
T 2px2_A 131 DVFY---K-PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC--PYMPKVIEKLESLQRRFG 203 (269)
T ss_dssp CGGG---S-CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC--TTSHHHHHHHHHHHHHHC
T ss_pred CccC---C-CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC--CCchHHHHHHHHHHHHcC
Confidence 7654 2 346899999997521 11111112222225667889999999 88875311 122567788899999999
Q ss_pred CceE
Q psy4593 94 RVAY 97 (132)
Q Consensus 94 ~v~~ 97 (132)
.|.+
T Consensus 204 ~vkv 207 (269)
T 2px2_A 204 GGLV 207 (269)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9874
No 191
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.01 Score=44.33 Aligned_cols=57 Identities=12% Similarity=-0.028 Sum_probs=41.6
Q ss_pred CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|+.+.-... ..++||+|++...-.+ +--..+++.+++.|+|||.+++.
T Consensus 88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~--------~~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW--------FDFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGG--------SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHH--------hCHHHHHHHHHHhcCCCcEEEEE
Confidence 578999999987643220 1278999998643221 13478999999999999999873
No 192
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.26 E-value=0.011 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
.++++++.+|+..... ....||+|+++..-+ .+ ++.+++.|+|||.+++..+.
T Consensus 132 ~~~v~~~~~d~~~~~~--~~~~fD~i~~~~~~~--------~~-----~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 132 SGRVQLVVGDGRMGYA--EEAPYDAIHVGAAAP--------VV-----PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp TSSEEEEESCGGGCCG--GGCCEEEEEECSBBS--------SC-----CHHHHHTEEEEEEEEEEESC
T ss_pred CCcEEEEECCcccCcc--cCCCcCEEEECCchH--------HH-----HHHHHHhcCCCcEEEEEEec
Confidence 3579999999875322 246799999886422 12 36888999999999986533
No 193
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=95.14 E-value=0.012 Score=42.02 Aligned_cols=58 Identities=14% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.+.- ..++||+|++....- ......--...+++.+++.|+|||++++.
T Consensus 79 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 79 RHVDFWVQDMRELE---LPEPVDAITILCDSL---NYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CCCEEEECCGGGCC---CSSCEEEEEECTTGG---GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEcChhhcC---CCCCcCEEEEeCCch---hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57899999987642 237899999853100 01111112367899999999999999874
No 194
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=95.13 E-value=0.0083 Score=41.94 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCC-C--------CCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAA-G--------PGRVVCPAE-SLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-d--------p~~~~~~~~-~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+. .- .+++||+|+.... + ++ ..... .--..++++.+++.|+|||.+++..
T Consensus 89 ~~i~~~~~d~~~~-~~-~~~~fD~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 89 PQLRWETMDVRKL-DF-PSASFDVVLEKGTLDALLAGERDPW--TVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp TTCEEEECCTTSC-CS-CSSCEEEEEEESHHHHHTTTCSCTT--SCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEcchhcC-CC-CCCcccEEEECcchhhhcccccccc--ccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 6899999998764 22 4578999996432 1 11 00000 0123789999999999999999864
No 195
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=95.09 E-value=0.013 Score=41.29 Aligned_cols=51 Identities=25% Similarity=0.219 Sum_probs=36.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
++++++.+|+...+.. ..+||+|+.+..-++ + .+.+++.|+|||.+++...
T Consensus 128 ~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~~--------~-----~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 128 DNVIVIVGDGTLGYEP--LAPYDRIYTTAAGPK--------I-----PEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp TTEEEEESCGGGCCGG--GCCEEEEEESSBBSS--------C-----CHHHHHTEEEEEEEEEEES
T ss_pred CCeEEEECCcccCCCC--CCCeeEEEECCchHH--------H-----HHHHHHHcCCCcEEEEEEC
Confidence 4688999998554332 467999998854331 1 1588999999999998653
No 196
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=95.08 E-value=0.005 Score=46.04 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.++- .+++||+|++...-- .....---..+++.+++.|+|||.+++..
T Consensus 133 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 133 DRCTLVQGDMSAFA---LDKRFGTVVISSGSI----NELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp TTEEEEECBTTBCC---CSCCEEEEEECHHHH----TTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEEeCchhcCC---cCCCcCEEEECCccc----ccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 57899999987632 257899888631100 10000112789999999999999999864
No 197
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=95.07 E-value=0.0098 Score=44.19 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++++|+.++- .+++||+|++...-. ..+. ..++++.+++.|+|||.+++..
T Consensus 72 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 72 YDSEFLEGDATEIE---LNDKYDIAICHAFLL----HMTT---PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp SEEEEEESCTTTCC---CSSCEEEEEEESCGG----GCSS---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEEcchhhcC---cCCCeeEEEECChhh----cCCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence 37889999988742 246899999865322 1111 2689999999999999999753
No 198
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=95.05 E-value=0.018 Score=42.58 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=40.6
Q ss_pred CCcEEEEccHHHHhcC-CCCCeecEEEEc--CCCCCCCCCC--CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSG-PVKNMCGLVVSG--AAGPGRVVCP--AESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D--~~dp~~~~~~--~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++.++.+|+.+.-.. ..+++||+|++- +... ... ...---..+++.++++|+|||++++..
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 109 DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH---LPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp HTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGG---SCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeeEeecChhhCccccccCCCeEEEEEcChHHhh---cCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4677888888775421 135789999984 3321 110 000113789999999999999999754
No 199
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.00 E-value=0.019 Score=40.06 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=38.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.+. .- .+++||+|+... .. . . .--..++++.+++.|+|||.+++.
T Consensus 76 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~--~~--~-~--~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 76 VKITTVQSNLADF-DI-VADAWEGIVSIF--CH--L-P--SSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp CCEEEECCBTTTB-SC-CTTTCSEEEEEC--CC--C-C--HHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred CceEEEEcChhhc-CC-CcCCccEEEEEh--hc--C-C--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3788888887664 22 357899999732 11 1 1 112478899999999999999875
No 200
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=94.98 E-value=0.016 Score=44.67 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..++ . .+++||+|+.+..... ..... ..+.+..+++.|+|||+++..
T Consensus 99 ~~v~~~~~d~~~~--~-~~~~~D~Ivs~~~~~~---~~~~~--~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 99 DRIVVIPGKVEEV--S-LPEQVDIIISEPMGYM---LFNER--MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTEEEEESCTTTC--C-CSSCEEEEEECCCBTT---BTTTS--HHHHHHHGGGGEEEEEEEESC
T ss_pred CcEEEEEcchhhC--C-CCCceeEEEEeCchhc---CChHH--HHHHHHHHHhhcCCCeEEEEe
Confidence 6799999997764 2 2368999999754221 11111 257788899999999999854
No 201
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=94.94 E-value=0.014 Score=42.05 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=39.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+.-..-. ..+. ---..+++.+++.|+|||++++.
T Consensus 140 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 140 PVGKFILASMETA-TL-PPNTYDLIVIQWTAI----YLTD-ADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp SEEEEEESCGGGC-CC-CSSCEEEEEEESCGG----GSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEccHHHC-CC-CCCCeEEEEEcchhh----hCCH-HHHHHHHHHHHHhcCCCeEEEEE
Confidence 5788999998763 22 457899999743211 1110 11368899999999999999874
No 202
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=94.92 E-value=0.016 Score=40.43 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+. .- .+++||+|+....-. ..+ .--...+++.+++.|+|||++++.
T Consensus 71 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 71 FKLNISKGDIRKL-PF-KDESMSFVYSYGTIF----HMR-KNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp CCCCEEECCTTSC-CS-CTTCEEEEEECSCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECchhhC-CC-CCCceeEEEEcChHH----hCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5788899998653 22 457899999752111 111 112468899999999999999875
No 203
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=94.91 E-value=0.019 Score=45.34 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+++++.+|..+. . .++++|+||.+..+. .....-.-..++....+.|+|||+++-
T Consensus 131 ~~~i~~i~~~~~~~--~-lpe~~DvivsE~~~~----~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 131 EDRVHVLPGPVETV--E-LPEQVDAIVSEWMGY----GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTTEEEEESCTTTC--C-CSSCEEEEECCCCBT----TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred CceEEEEeeeeeee--c-CCccccEEEeecccc----cccccchhhhHHHHHHhhCCCCceECC
Confidence 46799999997663 2 357899999987654 223333457788888999999999873
No 204
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=94.88 E-value=0.018 Score=44.20 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC---------CCC-CCc-ccccHHHHHHHHHhcCCCcEEEEecCCCCC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR---------VVC-PAE-SLFQASYFELMSRALRPGGIVCSQAGTLWY 76 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~---------~~~-~~~-~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~ 76 (132)
+++++.+|+.... ...+||+|+.+.+=..+ ... ..+ ..+...|++.+.+.|+|||.+++-..+.+.
T Consensus 185 ~~~i~~~D~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~ 261 (344)
T 2f8l_A 185 KMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF 261 (344)
T ss_dssp CCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred CceEEECCCCCcc---ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhc
Confidence 5788999976532 34689999998641100 000 001 112347999999999999998764322232
Q ss_pred ChHHHHHHHHHHHhh
Q psy4593 77 SLDCVGNTLQHCASV 91 (132)
Q Consensus 77 ~~~~~~~~~~~l~~v 91 (132)
.......+.+.|.+.
T Consensus 262 ~~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 262 GTSDFAKVDKFIKKN 276 (344)
T ss_dssp GSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhC
Confidence 222234555555544
No 205
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=94.86 E-value=0.013 Score=41.76 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=38.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+.- .+++||+|++-...- ......--...+++.+++.|+|||.+++.
T Consensus 83 ~~~~~~~~d~~~~~---~~~~~D~v~~~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 83 PDATLHQGDMRDFR---LGRKFSAVVSMFSSV---GYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp TTCEEEECCTTTCC---CSSCEEEEEECTTGG---GGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECCHHHcc---cCCCCcEEEEcCchH---hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56889999987642 256899999522100 01111111368999999999999999985
No 206
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=94.82 E-value=0.017 Score=43.34 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=40.3
Q ss_pred CCcEEEEccHHHH---hcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDF---MSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~---l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|.... +......+||+|++-..-.+ .... ..---..+++.++++|+|||++++..
T Consensus 154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~--ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW--VHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH--HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccceEEecccccCccccccccCCCcCEEEEChHHHH--hhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 5899999997532 11114578999997542110 0000 00023678999999999999999853
No 207
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=94.79 E-value=0.017 Score=43.50 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCcEEEEccHHHHhcCCCCCee---cEEEEcCCC-CCCCCCC-Ccccc-----------cHHHHHHHH-HhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMC---GLVVSGAAG-PGRVVCP-AESLF-----------QASYFELMS-RALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~y---DvIi~D~~d-p~~~~~~-~~~L~-----------t~eF~~~~~-~~L~p~Gil~~ 69 (132)
.|++++.+|..+.+. ++| |+|+++.+- +. .... +...+ ..+||+.+. +.|+|||++++
T Consensus 173 ~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~-~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 173 DRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKS-SAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp TSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCG-GGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CceEEEECcchhhcc----cccCCCCEEEEcCCCCCc-ccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 369999999988653 368 999998531 10 0000 00001 128999999 99999999998
Q ss_pred ec
Q psy4593 70 QA 71 (132)
Q Consensus 70 ~~ 71 (132)
-.
T Consensus 248 e~ 249 (284)
T 1nv8_A 248 EI 249 (284)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 208
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=94.78 E-value=0.0046 Score=43.95 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=35.7
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGI 66 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi 66 (132)
..++++++.+|+.+.-.. ..++||+|+.- +... .+. --...+++.+++.|+|||.
T Consensus 80 ~~~~v~~~~~d~~~l~~~-~~~~fD~v~~~~~l~~-----l~~-~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 80 AAPGIEIWCGDFFALTAR-DIGHCAAFYDRAAMIA-----LPA-DMRERYVQHLEALMPQACS 135 (203)
T ss_dssp ECSSSEEEEECCSSSTHH-HHHSEEEEEEESCGGG-----SCH-HHHHHHHHHHHHHSCSEEE
T ss_pred cCCccEEEECccccCCcc-cCCCEEEEEECcchhh-----CCH-HHHHHHHHHHHHHcCCCcE
Confidence 357899999997653211 11589999853 2211 111 1124589999999999997
No 209
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.76 E-value=0.016 Score=41.86 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|..+.- ..++||+|++..... .... .---.++++.++++|+|||++++.
T Consensus 88 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~---~~~~-~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 88 LKIEFLQGDVLEIA---FKNEFDAVTMFFSTI---MYFD-EEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp CCCEEEESCGGGCC---CCSCEEEEEECSSGG---GGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECChhhcc---cCCCccEEEEcCCch---hcCC-HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 47899999988742 246899999753211 0111 011367899999999999999875
No 210
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=94.75 E-value=0.0083 Score=45.17 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=40.4
Q ss_pred CCcEEEEccHHHHh-----cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFM-----SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l-----~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++++.+|+.+.. .. .+++||+|++...-.+ .....--...+++.++++|+|||+++...
T Consensus 90 ~~~~~~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~l~~---~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 90 FSAEFITADSSKELLIDKFRD-PQMCFDICSCQFVCHY---SFESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp CEEEEEECCTTTSCSTTTCSS-TTCCEEEEEEETCGGG---GGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ceEEEEEecccccchhhhccc-CCCCEEEEEEecchhh---ccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 47889999987752 11 2358999997542211 00000112589999999999999999864
No 211
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=94.68 E-value=0.026 Score=42.04 Aligned_cols=54 Identities=4% Similarity=-0.066 Sum_probs=34.6
Q ss_pred EEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 10 LSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 10 ~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+...+|+-++.. ...+++||+|+.-..=.+ .+. -..+++.++++|+|||.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~----~~d---~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 114 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY----VKD---IPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp EEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGG----CSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEecchhhhhhhhccccCCCceeEEEEeeeeee----cCC---HHHHHHHHHHHcCCCcEEEEE
Confidence 444566665542 113578999996432111 111 257899999999999999874
No 212
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=94.60 E-value=0.021 Score=40.58 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=37.8
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|+... .- .+++||+|++...-. ..+. ..++++.+++.|+|||.+++.
T Consensus 85 ~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 85 GVFVLKGTAENL-PL-KDESFDFALMVTTIC----FVDD---PERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp TCEEEECBTTBC-CS-CTTCEEEEEEESCGG----GSSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEcccccC-CC-CCCCeeEEEEcchHh----hccC---HHHHHHHHHHHcCCCcEEEEE
Confidence 578888887552 22 457899999753211 1111 268999999999999999875
No 213
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=94.59 E-value=0.02 Score=43.98 Aligned_cols=76 Identities=11% Similarity=-0.045 Sum_probs=48.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
+.+++.+|+..+. +++||+|+.+..-. .+.. ..-...++++.++++|+|||.+++-.... .. ...
T Consensus 246 ~~~~~~~d~~~~~----~~~fD~Iv~~~~~~---~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~------~~~ 311 (343)
T 2pjd_A 246 EGEVFASNVFSEV----KGRFDMIISNPPFH---DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LP------YPD 311 (343)
T ss_dssp CCEEEECSTTTTC----CSCEEEEEECCCCC---SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT-SS------HHH
T ss_pred CCEEEEccccccc----cCCeeEEEECCCcc---cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC-CC------cHH
Confidence 4677888887643 46899999975321 1110 01124789999999999999998743221 11 124
Q ss_pred HHHhhCCCceE
Q psy4593 87 HCASVFPRVAY 97 (132)
Q Consensus 87 ~l~~vF~~v~~ 97 (132)
.+++.|..+..
T Consensus 312 ~l~~~f~~~~~ 322 (343)
T 2pjd_A 312 VLDETFGFHEV 322 (343)
T ss_dssp HHHHHHSCCEE
T ss_pred HHHHhcCceEE
Confidence 56677777765
No 214
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=94.39 E-value=0.0065 Score=44.05 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=37.6
Q ss_pred c-EEEEccHHHHhcC--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 9 V-LSARQDCTDFMSG--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 9 v-~v~~~Dg~~~l~~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+ +++..|..+.... ...++||+|+.-..-. ..++..---..+++.++++|+|||.+++.
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 197 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD---AACPDLPAYRTALRNLGSLLKPGGFLVMV 197 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---HHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhh---hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence 6 8888998765321 1227899999643210 00111112367899999999999999874
No 215
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=94.32 E-value=0.026 Score=40.24 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=36.2
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
+++++.+|+.+.+. ..++||+|+++..-. ++ .+.+++.|+|||.+++...
T Consensus 117 ~v~~~~~d~~~~~~--~~~~fD~v~~~~~~~--------~~-----~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 117 NIKLILGDGTLGYE--EEKPYDRVVVWATAP--------TL-----LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SEEEEESCGGGCCG--GGCCEEEEEESSBBS--------SC-----CHHHHHTEEEEEEEEEEEC
T ss_pred CeEEEECCcccccc--cCCCccEEEECCcHH--------HH-----HHHHHHHcCCCcEEEEEEc
Confidence 78999999877332 246899999885422 11 1468899999999987643
No 216
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=94.18 E-value=0.018 Score=41.06 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=38.8
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++++.+|..+.- - .++||+|++.. .-. ..+..--..++++.+++.|+|||++++.
T Consensus 85 ~~~~~~~d~~~~~-~--~~~fD~v~~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 85 KPRLACQDISNLN-I--NRKFDLITCCLDSTN----YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CCEEECCCGGGCC-C--SCCEEEEEECTTGGG----GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CeEEEecccccCC-c--cCCceEEEEcCcccc----ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7889999987642 2 37899999853 111 1111112368899999999999999874
No 217
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=94.14 E-value=0.024 Score=39.87 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=36.6
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++.+|+.++.....+++||+|+....-. ..+. ..++++.+++.|+|||.+++..
T Consensus 76 ~~~~~d~~~~~~~~~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 76 HVVLGDIETMDMPYEEEQFDCVIFGDVLE----HLFD---PWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp EEEESCTTTCCCCSCTTCEEEEEEESCGG----GSSC---HHHHHHHTGGGEEEEEEEEEEE
T ss_pred cEEEcchhhcCCCCCCCccCEEEECChhh----hcCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence 56777776542222457899999742211 1111 2689999999999999998753
No 218
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=93.82 E-value=0.041 Score=39.56 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
++++++.+|+..-+.. ...||+|+++..-+ . + .+.+.+.|+|||.+++....
T Consensus 140 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~----~----~-----~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 140 KNVHVILGDGSKGFPP--KAPYDVIIVTAGAP----K----I-----PEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEECSBBS----S----C-----CHHHHHTEEEEEEEEEEECS
T ss_pred CCcEEEECCcccCCCC--CCCccEEEECCcHH----H----H-----HHHHHHhcCCCcEEEEEEec
Confidence 3588999998322222 24599999875433 1 1 13688899999999987544
No 219
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=93.80 E-value=0.05 Score=41.78 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=53.9
Q ss_pred CCeecEEEEcCCCCCCCCCCC-c------ccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPA-E------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~-~------~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
..+||+|++|.--+. .+-. + .+.+- -.+.+-++|+|||.+++-+ ..........+++.|++.|..|+.
T Consensus 204 ~~k~DvV~SDMApn~--sGh~yqQC~DHarii~L-al~fA~~vLkPGGtfV~Kv--yggaDr~se~lv~~LaR~F~~Vr~ 278 (320)
T 2hwk_A 204 VPKYDIIFVNVRTPY--KYHHYQQCEDHAIKLSM-LTKKACLHLNPGGTCVSIG--YGYADRASESIIGAIARQFKFSRV 278 (320)
T ss_dssp SCCEEEEEEECCCCC--CSCHHHHHHHHHHHHHH-THHHHGGGEEEEEEEEEEE--CCCCSHHHHHHHHHHHTTEEEEEE
T ss_pred cCcCCEEEEcCCCCC--CCccccccchHHHHHHH-HHHHHHHhcCCCceEEEEE--ecCCcccHHHHHHHHHHhcceeee
Confidence 368999999986552 1111 0 01111 3456778999999999853 111223568899999999999887
Q ss_pred eEEeccCcCCCceeEEEeecCC
Q psy4593 98 GATCVPTYPSGQIGFVLGSQLL 119 (132)
Q Consensus 98 ~~~~~p~~~~~~~~f~~as~~~ 119 (132)
.+-.. +.. ..=.|++|..-.
T Consensus 279 vKP~A-SR~-StEvf~La~gf~ 298 (320)
T 2hwk_A 279 CKPKS-SLE-ETEVLFVFIGYD 298 (320)
T ss_dssp ECCTT-CCS-TTCEEEEEEEEC
T ss_pred eCCCC-ccc-cceEEEEEEeec
Confidence 43211 222 234567776543
No 220
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=93.73 E-value=0.064 Score=40.63 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=29.2
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
.+++||+|++-..-.. .....+. ..+++.++++|+|||+++...
T Consensus 126 ~~~~FD~V~~~~~lhy--~~~~~~~--~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHY--SFHPRHY--ATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp CSSCEEEEEEESCGGG--TCSTTTH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHH--hCCHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence 3578999986421100 0011122 789999999999999998754
No 221
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=93.67 E-value=0.041 Score=39.52 Aligned_cols=61 Identities=7% Similarity=-0.191 Sum_probs=39.8
Q ss_pred CCCCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 5 RGYPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
...+++++.+|+.+.-... ....||+|+....-.+ .+. --...+++.++++|+|||.+++.
T Consensus 99 ~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~---~~~--~~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 99 TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH---IPV--EKRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTT---SCG--GGHHHHHHHHHHHHTTTCEEEEE
T ss_pred cccCceEEECcccccccccccccccCccEEEEcchhhc---CCH--HHHHHHHHHHHHHcCCCCEEEEE
Confidence 3458899999976643220 0134999998754331 111 11378999999999999987653
No 222
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=93.53 E-value=0.071 Score=40.27 Aligned_cols=56 Identities=13% Similarity=-0.046 Sum_probs=37.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+|++++.+|..+ . ..+.||+|++-..-. ..+ .--...+++.++++|+|||.+++.
T Consensus 216 ~~~v~~~~~d~~~---~-~~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 216 GERVSLVGGDMLQ---E-VPSNGDIYLLSRIIG----DLD-EAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp TTSEEEEESCTTT---C-CCSSCSEEEEESCGG----GCC-HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCcEEEecCCCCC---C-CCCCCCEEEEchhcc----CCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3578899998765 2 236799999643211 001 001258899999999999998875
No 223
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=93.48 E-value=0.068 Score=40.44 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=35.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|++++.+|.. .. .+..||+|++-. ... .+. --...+++.++++|+|||.+++.
T Consensus 219 ~~v~~~~~d~~---~~-~p~~~D~v~~~~vlh~-----~~~-~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 219 GRAQVVVGSFF---DP-LPAGAGGYVLSAVLHD-----WDD-LSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp TTEEEEECCTT---SC-CCCSCSEEEEESCGGG-----SCH-HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCeEEecCCCC---CC-CCCCCcEEEEehhhcc-----CCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 67888888865 23 223799998632 111 000 01267899999999999999875
No 224
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=93.22 E-value=0.15 Score=38.93 Aligned_cols=55 Identities=11% Similarity=-0.124 Sum_probs=36.4
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+|++++.+|.. .. .+ .||+|+.-..-. ..+ .--...+++.++++|+|||.+++.
T Consensus 231 ~~~v~~~~~d~~---~~-~p-~~D~v~~~~vlh----~~~-d~~~~~~L~~~~~~LkpgG~l~i~ 285 (348)
T 3lst_A 231 AGRWKVVEGDFL---RE-VP-HADVHVLKRILH----NWG-DEDSVRILTNCRRVMPAHGRVLVI 285 (348)
T ss_dssp TTSEEEEECCTT---TC-CC-CCSEEEEESCGG----GSC-HHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCeEEEecCCC---CC-CC-CCcEEEEehhcc----CCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 367888888875 23 23 899998632111 000 001157899999999999999874
No 225
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=93.11 E-value=0.11 Score=40.14 Aligned_cols=56 Identities=5% Similarity=-0.111 Sum_probs=36.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+|++++.+|.. .. .+..||+|++-..-. ..+ .--...+++.++++|+|||.+++.
T Consensus 251 ~~~v~~~~~d~~---~~-~p~~~D~v~~~~vlh----~~~-d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 251 ADRCEILPGDFF---ET-IPDGADVYLIKHVLH----DWD-DDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp TTTEEEEECCTT---TC-CCSSCSEEEEESCGG----GSC-HHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCceEEeccCCC---CC-CCCCceEEEhhhhhc----cCC-HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 367888888876 22 223799998632110 000 001136899999999999999874
No 226
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=93.10 E-value=0.25 Score=37.62 Aligned_cols=83 Identities=11% Similarity=-0.016 Sum_probs=46.0
Q ss_pred CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCC----c----------cc-----ccHHHHHHHHHhcCCCcE
Q psy4593 7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPA----E----------SL-----FQASYFELMSRALRPGGI 66 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~----~----------~L-----~t~eF~~~~~~~L~p~Gi 66 (132)
.+++++.+|+.++..... ..+||+|++|++-.. .+.- . .+ ...+.++.+.+.|+ +|.
T Consensus 153 ~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg--~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~ 229 (309)
T 2b9e_A 153 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQR 229 (309)
T ss_dssp CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHTTCTT-CCE
T ss_pred CeEEEEeCChHhcCccccccCCCCEEEEcCCcCC--CCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCE
Confidence 468999999988644311 147999999985321 2210 0 10 12356677777776 998
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593 67 VCSQAGTLWYSLDCVGNTLQHCASVFPR 94 (132)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~l~~vF~~ 94 (132)
++..+++... ..-..+++.+.+..+.
T Consensus 230 lvYsTCs~~~--~Ene~~v~~~l~~~~~ 255 (309)
T 2b9e_A 230 LVYSTCSLCQ--EENEDVVRDALQQNPG 255 (309)
T ss_dssp EEEEESCCCG--GGTHHHHHHHHTTSTT
T ss_pred EEEECCCCCh--HHhHHHHHHHHHhCCC
Confidence 8866555332 2223344444444443
No 227
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=92.94 E-value=0.019 Score=41.31 Aligned_cols=54 Identities=13% Similarity=-0.073 Sum_probs=37.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++.. +.+||+|+.|..-.+ ..... ..+..+++.|+|||++++.
T Consensus 127 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~--~~~~~-----~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 127 DKIEFICGDFLLLAS---FLKADVVFLSPPWGG--PDYAT-----AETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGEEEEESCHHHHGG---GCCCSEEEECCCCSS--GGGGG-----SSSBCTTTSCSSCHHHHHH
T ss_pred cCeEEEECChHHhcc---cCCCCEEEECCCcCC--cchhh-----hHHHHHHhhcCCcceeHHH
Confidence 579999999999873 368999999864221 11111 1344688899999997653
No 228
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=92.48 E-value=0.17 Score=37.07 Aligned_cols=72 Identities=8% Similarity=-0.058 Sum_probs=48.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
.+++++.+|+.+-+.. .++||+|++-- ++ .-.-.+++..+.+.|+++|.++++.. .+. ..+.+
T Consensus 66 ~~i~~~~~d~l~~l~~--~~~~D~IviaG------~G---g~~i~~Il~~~~~~L~~~~~lVlq~~---~~~---~~vr~ 128 (225)
T 3kr9_A 66 EKIQVRLANGLAAFEE--TDQVSVITIAG------MG---GRLIARILEEGLGKLANVERLILQPN---NRE---DDLRI 128 (225)
T ss_dssp TTEEEEECSGGGGCCG--GGCCCEEEEEE------EC---HHHHHHHHHHTGGGCTTCCEEEEEES---SCH---HHHHH
T ss_pred ceEEEEECchhhhccc--CcCCCEEEEcC------CC---hHHHHHHHHHHHHHhCCCCEEEEECC---CCH---HHHHH
Confidence 4799999999876654 23799988631 22 12257899999999999999999743 233 34445
Q ss_pred HHHhh-CCCc
Q psy4593 87 HCASV-FPRV 95 (132)
Q Consensus 87 ~l~~v-F~~v 95 (132)
.|.+. |.-+
T Consensus 129 ~L~~~Gf~i~ 138 (225)
T 3kr9_A 129 WLQDHGFQIV 138 (225)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHCCCEEE
Confidence 55544 5433
No 229
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=92.48 E-value=0.31 Score=37.11 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=44.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHH--------------HHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELM--------------SRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--------------~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
.+||+|+++.-.|. . ...|++| -++|+|||.+++-+-. +.......++..+.+.
T Consensus 210 grYDlVfvNv~Tpy---R-------~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYG--yADR~SE~vV~alARk 277 (324)
T 3trk_A 210 GRYDLVVINIHTPF---R-------IHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYG--YADRTSERVICVLGRK 277 (324)
T ss_dssp CCEEEEEEECCCCC---C-------SSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECC--CCSHHHHHHHHHHHTT
T ss_pred CceeEEEEecCCcc---c-------cchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeec--ccccchHHHHHHHHhh
Confidence 69999999987762 1 2234444 4679999999986522 3334567889999999
Q ss_pred CCCceEeE
Q psy4593 92 FPRVAYGA 99 (132)
Q Consensus 92 F~~v~~~~ 99 (132)
|..+.+.+
T Consensus 278 F~~~rv~~ 285 (324)
T 3trk_A 278 FRSSRALK 285 (324)
T ss_dssp EEEEEEEC
T ss_pred heeeeeec
Confidence 99887654
No 230
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=92.37 E-value=0.087 Score=38.34 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++++.+|+.+. .- .+++||+|+.-.. + .+++.+++.|+|||.+++..
T Consensus 130 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~-~-------------~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 130 PQVTFCVASSHRL-PF-SDTSMDAIIRIYA-P-------------CKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp TTSEEEECCTTSC-SB-CTTCEEEEEEESC-C-------------CCHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEcchhhC-CC-CCCceeEEEEeCC-h-------------hhHHHHHHhcCCCcEEEEEE
Confidence 4677888887542 22 3568999996311 1 24899999999999998753
No 231
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=92.31 E-value=0.35 Score=40.40 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHH--------------HHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFEL--------------MSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS 90 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~--------------~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~ 90 (132)
..+||+|++|.-.|. . ...|++ .-++|+|||.+++-+-. +.......++..+.+
T Consensus 219 ~~ryDlvfvn~~t~y---r-------~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YG--yADr~sE~vv~alaR 286 (670)
T 4gua_A 219 QARYDLVFINIGTKY---R-------NHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYG--YADRNSEDVVTALAR 286 (670)
T ss_dssp CCCEEEEEECCCCCC---C-------SCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC--CCSHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCc---c-------cchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEee--ccccchHHHHHHHHh
Confidence 469999999987762 1 122443 34689999999986522 334457789999999
Q ss_pred hCCCceEeEE
Q psy4593 91 VFPRVAYGAT 100 (132)
Q Consensus 91 vF~~v~~~~~ 100 (132)
.|..+++.+-
T Consensus 287 kF~~~rv~~p 296 (670)
T 4gua_A 287 KFVRVSAARP 296 (670)
T ss_dssp TEEEEEEECC
T ss_pred heeeeeeeCC
Confidence 9998877543
No 232
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=92.27 E-value=0.091 Score=37.00 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=35.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+ +.- .++. |.|++...-. .... ..--..++++.+++.|+|||.+++.
T Consensus 81 ~~v~~~~~d~~~-l~~-~~~~-d~v~~~~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 81 PNLLYLWATAER-LPP-LSGV-GELHVLMPWG---SLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp TTEEEEECCSTT-CCS-CCCE-EEEEEESCCH---HHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred CceEEEecchhh-CCC-CCCC-CEEEEEccch---hhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 478888888776 333 3344 7766443211 0000 0000168899999999999999874
No 233
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=92.19 E-value=0.12 Score=37.73 Aligned_cols=54 Identities=17% Similarity=0.017 Sum_probs=37.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.++ .- .+++||+|++-..-. ... --..+++.++++|+ ||.+++.
T Consensus 76 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 76 PQVEWFTGYAENL-AL-PDKSVDGVISILAIH----HFS---HLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp TTEEEECCCTTSC-CS-CTTCBSEEEEESCGG----GCS---SHHHHHHHHHHHBC-SSCEEEE
T ss_pred cCCEEEECchhhC-CC-CCCCEeEEEEcchHh----hcc---CHHHHHHHHHHHhC-CcEEEEE
Confidence 4788899998652 22 457999999754211 111 12689999999999 9965543
No 234
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=92.16 E-value=0.5 Score=35.05 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=39.2
Q ss_pred CCCcEEEEccHHHH--h-------cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDF--M-------SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~--l-------~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|..+. + +.....+||+|++-..=. ..+.. --...++.++++|+|||.+++.
T Consensus 127 ~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh----~~~d~-~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 127 DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLH----YLSPD-VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGG----GSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhh----hCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 46889999998642 2 111124799998654211 11111 2368899999999999999875
No 235
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=92.12 E-value=0.77 Score=31.73 Aligned_cols=68 Identities=4% Similarity=-0.075 Sum_probs=42.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~ 87 (132)
+++++.+|+.++ +.+||+|+.|.+-. ....-...++++.+.+.| +|+++... ........+.+.
T Consensus 98 ~~~~~~~d~~~~-----~~~~D~v~~~~p~~-----~~~~~~~~~~l~~~~~~l--~~~~~~~~----~~~~~~~~~~~~ 161 (207)
T 1wy7_A 98 KFKVFIGDVSEF-----NSRVDIVIMNPPFG-----SQRKHADRPFLLKAFEIS--DVVYSIHL----AKPEVRRFIEKF 161 (207)
T ss_dssp SEEEEESCGGGC-----CCCCSEEEECCCCS-----SSSTTTTHHHHHHHHHHC--SEEEEEEE----CCHHHHHHHHHH
T ss_pred CEEEEECchHHc-----CCCCCEEEEcCCCc-----cccCCchHHHHHHHHHhc--CcEEEEEe----CCcCCHHHHHHH
Confidence 789999998773 24899999997421 111123478899999998 77776542 122334444455
Q ss_pred HHhh
Q psy4593 88 CASV 91 (132)
Q Consensus 88 l~~v 91 (132)
+++.
T Consensus 162 l~~~ 165 (207)
T 1wy7_A 162 SWEH 165 (207)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 5543
No 236
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=92.07 E-value=0.067 Score=41.24 Aligned_cols=57 Identities=9% Similarity=-0.113 Sum_probs=34.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|++++.+|..+.-.. -++.||+|+.-. ..-+ +.. -...+++.++++|+|||.+++.
T Consensus 229 ~~v~~~~~d~~~~~~~-~p~~~D~v~~~~vlh~~----~~~--~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 229 ERIHGHGANLLDRDVP-FPTGFDAVWMSQFLDCF----SEE--EVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp GGEEEEECCCCSSSCC-CCCCCSEEEEESCSTTS----CHH--HHHHHHHHHHHHCCTTCEEEEE
T ss_pred cceEEEEccccccCCC-CCCCcCEEEEechhhhC----CHH--HHHHHHHHHHHhcCCCcEEEEE
Confidence 4677788875432000 125788888532 2110 000 1257899999999999999874
No 237
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=91.78 E-value=0.032 Score=45.24 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..++ . ..++||+|+++.... ....+. ..+.+..+++.|+|||+++..
T Consensus 207 ~~v~~~~~d~~~~--~-~~~~fD~Ivs~~~~~---~~~~e~--~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 207 DRIVVIPGKVEEV--S-LPEQVDIIISEPMGY---MLFNER--MLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TTEEEEESCTTTC--C-CSSCEEEEECCCCHH---HHTCHH--HHHHHHHGGGGEEEEEEEESC
T ss_pred CcEEEEECchhhC--c-cCCCeEEEEEeCchH---hcCcHH--HHHHHHHHHHhcCCCCEEEEE
Confidence 6899999998764 2 246899999864311 001111 256777889999999999854
No 238
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=91.72 E-value=0.052 Score=45.70 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+|+|+.+|.+++ + .+++.|+||...-+. ...- ++ ..|.+....+.|+|||++.-
T Consensus 410 ~dkVtVI~gd~eev--~-LPEKVDIIVSEwMG~---fLl~-E~-mlevL~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 410 GSQVTVVSSDMREW--V-APEKADIIVSELLGS---FADN-EL-SPECLDGAQHFLKDDGVSIP 465 (637)
T ss_dssp GGGEEEEESCTTTC--C-CSSCEEEEECCCCBT---TBGG-GC-HHHHHHHHGGGEEEEEEEES
T ss_pred CCeEEEEeCcceec--c-CCcccCEEEEEcCcc---cccc-cC-CHHHHHHHHHhcCCCcEEcc
Confidence 46799999998885 3 468999999998755 2323 33 24778888999999999863
No 239
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=91.48 E-value=0.064 Score=39.04 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=35.3
Q ss_pred EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++.+|+.+. .- .+++||+|++...- ...... ..++++.+++.|+|||.+++..
T Consensus 100 ~~~~d~~~~-~~-~~~~fD~v~~~~~~----~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 100 VVEAKAEDL-PF-PSGAFEAVLALGDV----LSYVEN--KDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp EEECCTTSC-CS-CTTCEEEEEECSSH----HHHCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECcHHHC-CC-CCCCEEEEEEcchh----hhcccc--HHHHHHHHHHHcCCCeEEEEEe
Confidence 566776542 22 35789999974210 011111 5789999999999999999864
No 240
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=91.47 E-value=0.055 Score=41.18 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=37.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|++++.+|..+.-.. ..+.||+|+.-. ... -+.. -...+++.++++|+|||.+++.
T Consensus 229 ~~v~~~~~d~~~~~~~-~~~~~D~v~~~~vlh~----~~~~--~~~~~l~~~~~~L~pgG~l~i~ 286 (352)
T 3mcz_A 229 GRVEFFEKNLLDARNF-EGGAADVVMLNDCLHY----FDAR--EAREVIGHAAGLVKPGGALLIL 286 (352)
T ss_dssp GGEEEEECCTTCGGGG-TTCCEEEEEEESCGGG----SCHH--HHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceEEEeCCcccCccc-CCCCccEEEEeccccc----CCHH--HHHHHHHHHHHHcCCCCEEEEE
Confidence 4688888886654211 235699999632 111 0000 1267999999999999999874
No 241
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=91.45 E-value=0.035 Score=41.13 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred cEEEEccHHHHhc--C--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CCCCC------
Q psy4593 9 VLSARQDCTDFMS--G--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GTLWY------ 76 (132)
Q Consensus 9 v~v~~~Dg~~~l~--~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~~~~------ 76 (132)
++++..|+.+.+. . ..+++||+|+.-..-.+ ..+. .---..+++.+++.|+|||.+++.. ...+.
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~~~-~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VSPD-LASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HCSS-HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhh--hcCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 4566667765332 1 12457999997432110 0100 0012678999999999999998741 11110
Q ss_pred ---ChHHHHHHHHHHHhh-CCCceEeEEe
Q psy4593 77 ---SLDCVGNTLQHCASV-FPRVAYGATC 101 (132)
Q Consensus 77 ---~~~~~~~~~~~l~~v-F~~v~~~~~~ 101 (132)
..-....+.+.|++. |..+......
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000134556666665 8766654443
No 242
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=91.28 E-value=0.12 Score=41.04 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=38.1
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCC---------CcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCP---------AESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~---------~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+++.+|..... ...+||+|+.+.+ ........ +..-....|++.+.+.|+|||.+++
T Consensus 237 ~~~i~~gD~l~~~---~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 237 RSPIVCEDSLEKE---PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp CCSEEECCTTTSC---CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCEeeCCCCCCc---ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 6789999976642 2348999999863 11000000 0011125899999999999998875
No 243
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=91.11 E-value=0.13 Score=39.44 Aligned_cols=55 Identities=18% Similarity=0.030 Sum_probs=36.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+.+ ...||+|++...-. ..+ .--...+++.+++.|+|||.+++.
T Consensus 232 ~~v~~~~~d~~~~~----~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 286 (374)
T 1qzz_A 232 DRVTVAEGDFFKPL----PVTADVVLLSFVLL----NWS-DEDALTILRGCVRALEPGGRLLVL 286 (374)
T ss_dssp TTEEEEECCTTSCC----SCCEEEEEEESCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEeCCCCCcC----CCCCCEEEEecccc----CCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 47889999976522 23499998743211 001 001147999999999999988764
No 244
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=91.09 E-value=0.26 Score=36.26 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=48.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
.+++++.+|+.+-+.. .++||+|++-- ++. -.-.+++....+.|+++|.++++. -.+. ..+.+
T Consensus 72 ~~I~~~~gD~l~~~~~--~~~~D~IviaG------mGg---~lI~~IL~~~~~~l~~~~~lIlqp---~~~~---~~lr~ 134 (230)
T 3lec_A 72 SKIDVRLANGLSAFEE--ADNIDTITICG------MGG---RLIADILNNDIDKLQHVKTLVLQP---NNRE---DDLRK 134 (230)
T ss_dssp TTEEEEECSGGGGCCG--GGCCCEEEEEE------ECH---HHHHHHHHHTGGGGTTCCEEEEEE---SSCH---HHHHH
T ss_pred CcEEEEECchhhcccc--ccccCEEEEeC------Cch---HHHHHHHHHHHHHhCcCCEEEEEC---CCCh---HHHHH
Confidence 5899999999987644 34799988631 221 235778999999999999999974 2333 34444
Q ss_pred HHHhh-CC
Q psy4593 87 HCASV-FP 93 (132)
Q Consensus 87 ~l~~v-F~ 93 (132)
.|.+. |.
T Consensus 135 ~L~~~Gf~ 142 (230)
T 3lec_A 135 WLAANDFE 142 (230)
T ss_dssp HHHHTTEE
T ss_pred HHHHCCCE
Confidence 55544 54
No 245
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=91.01 E-value=0.27 Score=36.48 Aligned_cols=70 Identities=7% Similarity=-0.069 Sum_probs=48.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ 86 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~ 86 (132)
.+++++.+|+.+-+.. .++||+|++- . ++. -.-.+++....+.|+++|.++++. -.+. ..+.+
T Consensus 72 ~~I~v~~gD~l~~~~~--~~~~D~Ivia---g---mGg---~lI~~IL~~~~~~L~~~~~lIlq~---~~~~---~~lr~ 134 (244)
T 3gnl_A 72 EQIDVRKGNGLAVIEK--KDAIDTIVIA---G---MGG---TLIRTILEEGAAKLAGVTKLILQP---NIAA---WQLRE 134 (244)
T ss_dssp TTEEEEECSGGGGCCG--GGCCCEEEEE---E---ECH---HHHHHHHHHTGGGGTTCCEEEEEE---SSCH---HHHHH
T ss_pred ceEEEEecchhhccCc--cccccEEEEe---C---Cch---HHHHHHHHHHHHHhCCCCEEEEEc---CCCh---HHHHH
Confidence 5799999999887643 2469999872 1 221 234778999999999999999974 2333 34445
Q ss_pred HHHhh-CC
Q psy4593 87 HCASV-FP 93 (132)
Q Consensus 87 ~l~~v-F~ 93 (132)
.|.+. |.
T Consensus 135 ~L~~~Gf~ 142 (244)
T 3gnl_A 135 WSEQNNWL 142 (244)
T ss_dssp HHHHHTEE
T ss_pred HHHHCCCE
Confidence 55554 54
No 246
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=90.96 E-value=0.097 Score=39.91 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=36.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+.+ ...||+|+....-. ..+ .--..++++.++++|+|||.+++.
T Consensus 233 ~~v~~~~~d~~~~~----~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 287 (360)
T 1tw3_A 233 DRVDVVEGDFFEPL----PRKADAIILSFVLL----NWP-DHDAVRILTRCAEALEPGGRILIH 287 (360)
T ss_dssp TTEEEEECCTTSCC----SSCEEEEEEESCGG----GSC-HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceEEEeCCCCCCC----CCCccEEEEccccc----CCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 47889999876422 23499998743211 001 001147999999999999988764
No 247
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=90.59 E-value=0.29 Score=37.64 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCcEEEEe--cCCCCCChHH-------------------HHHHHHHHHhh-CCCceEeEEeccCcCCC
Q psy4593 51 ASYFELMSRALRPGGIVCSQ--AGTLWYSLDC-------------------VGNTLQHCASV-FPRVAYGATCVPTYPSG 108 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~--~~~~~~~~~~-------------------~~~~~~~l~~v-F~~v~~~~~~~p~~~~~ 108 (132)
...++.|+++|+|||.+++. ........+. ..++.+-++++ |..+++. |+ ++
T Consensus 263 ~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~----~~--~~ 336 (353)
T 4a6d_A 263 SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK----KT--GA 336 (353)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE----CC--SS
T ss_pred HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE----Ec--CC
Confidence 56799999999999988764 1111111110 12344455555 8777763 22 23
Q ss_pred ceeEEEeecCCC
Q psy4593 109 QIGFVLGSQLLK 120 (132)
Q Consensus 109 ~~~f~~as~~~~ 120 (132)
.+..++|.|+--
T Consensus 337 ~~~~i~ArKgt~ 348 (353)
T 4a6d_A 337 IYDAILARKGTH 348 (353)
T ss_dssp SCEEEEEECCCC
T ss_pred ceEEEEEEecCc
Confidence 566788887643
No 248
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=90.56 E-value=0.025 Score=41.00 Aligned_cols=60 Identities=5% Similarity=-0.154 Sum_probs=34.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
++++++.+|+..+-.. ..+.+|.|.+....+. .......-..++++.++++|+|||.+++
T Consensus 78 ~~v~~~~~d~~~l~~~-~~d~v~~i~~~~~~~~--~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 78 SNVVFVIAAAESLPFE-LKNIADSISILFPWGT--LLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp SSEEEECCBTTBCCGG-GTTCEEEEEEESCCHH--HHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred CCeEEEEcCHHHhhhh-ccCeEEEEEEeCCCcH--HhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4677777887654111 1245555555443220 0000011236789999999999999987
No 249
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=90.42 E-value=0.084 Score=39.68 Aligned_cols=55 Identities=13% Similarity=-0.045 Sum_probs=36.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|++++.+|..+. . ..+.||+|++ .+... .+. --..++++.++++|+|||.+++.
T Consensus 215 ~~v~~~~~d~~~~--~-~~~~~D~v~~~~~l~~-----~~~-~~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 215 SRYHTIAGSAFEV--D-YGNDYDLVLLPNFLHH-----FDV-ATCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp GGEEEEESCTTTS--C-CCSCEEEEEEESCGGG-----SCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEEecccccC--C-CCCCCcEEEEcchhcc-----CCH-HHHHHHHHHHHHhCCCCcEEEEE
Confidence 4688888887653 2 2345999997 33221 110 01268899999999999977654
No 250
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=90.36 E-value=0.31 Score=41.65 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.8
Q ss_pred CCCcEEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+|+|+.+|.+++-- . ..++.|+||...-.. ....+ ...|.+..+.+-|+|||++.-
T Consensus 471 ~d~VtVI~gd~eev~lp~~~~-~~ekVDIIVSElmGs----fl~nE-L~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 471 KRRVTIIESDMRSLPGIAKDR-GFEQPDIIVSELLGS----FGDNE-LSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp TTCSEEEESCGGGHHHHHHHT-TCCCCSEEEECCCBT----TBGGG-SHHHHHHTTGGGSCTTCEEES
T ss_pred CCeEEEEeCchhhcccccccC-CCCcccEEEEecccc----ccchh-ccHHHHHHHHHhCCCCcEEEC
Confidence 3679999999999832 1 257899999998533 22333 357889999999999999873
No 251
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=90.17 E-value=0.36 Score=38.40 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=35.9
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
++++.+|+.+++.. +||+|++|.+.. + ...++.+.++ .|+|+|++.+.+
T Consensus 339 v~~~~~d~~~~~~~----~fD~Vv~dPPr~----g-----~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 339 AEFEVASDREVSVK----GFDTVIVDPPRA----G-----LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp EEEEECCTTTCCCT----TCSEEEECCCTT----C-----SCHHHHHHHH-HHCCSEEEEEES
T ss_pred EEEEECChHHcCcc----CCCEEEEcCCcc----c-----hHHHHHHHHH-hcCCCcEEEEEC
Confidence 78899998886532 799999986422 1 2356777776 499999998854
No 252
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=90.01 E-value=0.19 Score=41.24 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=38.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC------CCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV------CPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~------~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+++.+|....-.. ...+||+|+.+.+= ..... ..+..-....|++.+.+.|+|||.+++
T Consensus 243 ~~~I~~gDtL~~~~~-~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 243 GGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp TBSEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCeEeCCCcccccc-cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 478999998754322 24689999998641 10000 001111234799999999999998775
No 253
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=89.99 E-value=0.17 Score=38.95 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=34.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|..+ . .+. ||+|+.-..-. ..+ .--...+++.++++|+|||.+++.
T Consensus 252 ~~v~~~~~d~~~---~-~~~-~D~v~~~~~lh----~~~-d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 252 SGIEHVGGDMFA---S-VPQ-GDAMILKAVCH----NWS-DEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp TTEEEEECCTTT---C-CCC-EEEEEEESSGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEeCCccc---C-CCC-CCEEEEecccc----cCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 568888888765 2 223 89998632211 001 001238999999999999998864
No 254
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=89.97 E-value=0.2 Score=37.32 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=25.6
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
.|++++.+|+.++++. ..++||+|++|..=+
T Consensus 145 ~~i~~~~~D~~~~L~~-~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 145 ERLQLIHASSLTALTD-ITPRPQVVYLDPMFP 175 (258)
T ss_dssp HHEEEEESCHHHHSTT-CSSCCSEEEECCCCC
T ss_pred cCEEEEECCHHHHHHh-CcccCCEEEEcCCCC
Confidence 5789999999999987 445799999997433
No 255
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=89.86 E-value=0.34 Score=35.09 Aligned_cols=55 Identities=9% Similarity=-0.135 Sum_probs=34.4
Q ss_pred CCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+| ++.... .+++||+|++...-. ..+. ...+.+.+++.++|||.+++.
T Consensus 101 ~~v~~~~~d--~~~~~~~~~~~~~fD~v~~~~~l~----~~~~---~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 101 DRLTVHFNT--NLSDDLGPIADQHFDRVVLAHSLW----YFAS---ANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp GGEEEECSC--CTTTCCGGGTTCCCSEEEEESCGG----GSSC---HHHHHHHHHHHTTTCSEEEEE
T ss_pred CceEEEECC--hhhhccCCCCCCCEEEEEEccchh----hCCC---HHHHHHHHHHHhCCCCEEEEE
Confidence 578888888 332221 347899999753211 1111 134677777777789999875
No 256
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.37 Score=32.77 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.++.||+|++=.. + .+ ...++++..+..+.+.|+|||.+..
T Consensus 56 p~stYD~V~~lt~-~---~~-~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 56 ENAKYETVHYLTP-E---AQ-TDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CSSSCCSEEEECC-C---SS-CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CcccccEEEEecC-C---cc-chhhcCHHHHHHHHHHhCCCCEEEe
Confidence 5689999996332 2 22 3467889999999999999999985
No 257
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=89.48 E-value=0.2 Score=38.84 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=36.1
Q ss_pred CCcEEEEccHHHHhcCCCC--------------CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 7 YPVLSARQDCTDFMSGPVK--------------NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~--------------~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
++++++.+|+.+++....+ .+||+|++|.+.. + + .+.+.+.|+++|.++.-++
T Consensus 261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~----g----~-----~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS----G----L-----DSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT----C----C-----CHHHHHHHTTSSEEEEEES
T ss_pred CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc----c----c-----HHHHHHHHhCCCEEEEEEC
Confidence 4789999999998743111 3799999996422 1 1 2345555678888876554
Q ss_pred CC
Q psy4593 73 TL 74 (132)
Q Consensus 73 ~~ 74 (132)
++
T Consensus 328 ~p 329 (369)
T 3bt7_A 328 NP 329 (369)
T ss_dssp CH
T ss_pred CH
Confidence 44
No 258
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=89.27 E-value=0.18 Score=39.32 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++||+|+.-..=. ..+ --.++++.+++.|+|||++++.
T Consensus 169 ~~~fD~I~~~~vl~----h~~---d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 169 EGPANVIYAANTLC----HIP---YVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HCCEEEEEEESCGG----GCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEEECChHH----hcC---CHHHHHHHHHHHcCCCeEEEEE
Confidence 46899999753211 111 1378999999999999999975
No 259
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=89.13 E-value=0.54 Score=32.47 Aligned_cols=50 Identities=6% Similarity=-0.098 Sum_probs=33.2
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+++++.+|+.++ +++||+|+.|..=.+ ...-...++++.+.+.| |++++.
T Consensus 96 ~~~~~~~d~~~~-----~~~~D~v~~~~p~~~-----~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 96 GVNFMVADVSEI-----SGKYDTWIMNPPFGS-----VVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp TSEEEECCGGGC-----CCCEEEEEECCCC------------CHHHHHHHHHHE--EEEEEE
T ss_pred CCEEEECcHHHC-----CCCeeEEEECCCchh-----ccCchhHHHHHHHHHhc--CcEEEE
Confidence 688999998773 268999999864211 11112368999999999 565554
No 260
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=89.01 E-value=0.39 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=26.6
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..||+|++|..=. . | ...+..+++.|+|||.+++
T Consensus 150 ~~fD~v~~d~sf~----s----l--~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 150 GLPSFASIDVSFI----S----L--NLILPALAKILVDGGQVVA 183 (291)
T ss_dssp CCCSEEEECCSSS----C----G--GGTHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEEeeHh----h----H--HHHHHHHHHHcCcCCEEEE
Confidence 3599999987421 1 2 6679999999999999876
No 261
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=88.90 E-value=0.21 Score=37.51 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=35.9
Q ss_pred CcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 8 PVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+++....|..+. .-...++||+|++= +.. ... .-.....++.++++|+|||++++-
T Consensus 195 ~V~F~~~dl~~~-~~~~~~~fDlI~crnvli-----yf~-~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 195 YVEFSSVNLLEK-QYNVPGPFDAIFCRNVMI-----YFD-KTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp TEEEEECCTTCS-SCCCCCCEEEEEECSSGG-----GSC-HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred cCeEEecccCCC-CCCcCCCeeEEEECCchH-----hCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 577777786541 00013689999982 211 111 111367899999999999999984
No 262
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=88.81 E-value=0.068 Score=38.70 Aligned_cols=29 Identities=3% Similarity=0.019 Sum_probs=20.4
Q ss_pred CCcEEEEccHHH-HhcCCC---CCeecEEEEcC
Q psy4593 7 YPVLSARQDCTD-FMSGPV---KNMCGLVVSGA 35 (132)
Q Consensus 7 ~rv~v~~~Dg~~-~l~~~~---~~~yDvIi~D~ 35 (132)
.+++++.+|+.+ +++... +++||+|+++.
T Consensus 116 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~np 148 (254)
T 2h00_A 116 DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP 148 (254)
T ss_dssp TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred ccEEEEEcchhhhhhhhhhcccCCcccEEEECC
Confidence 469999999876 232212 25899999984
No 263
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=88.41 E-value=0.88 Score=33.62 Aligned_cols=55 Identities=7% Similarity=-0.057 Sum_probs=33.7
Q ss_pred CCcEEEE---ccHHHHhcC-CCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcC---C--CcEEEE
Q psy4593 7 YPVLSAR---QDCTDFMSG-PVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALR---P--GGIVCS 69 (132)
Q Consensus 7 ~rv~v~~---~Dg~~~l~~-~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p--~Gil~~ 69 (132)
++++++. +|...-+.. ...++||+|+. |+.-. . -.-..+++.+++.|+ | ||++++
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-----~---~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-----H---QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-----G---GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-----h---HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 4677773 332222210 01468999986 76421 1 114678999999999 9 997654
No 264
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=88.33 E-value=0.23 Score=39.84 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=36.2
Q ss_pred CCcEEEEccHHH---HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTD---FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++++.+|+.. .+.. ....||+|++..+ . .... -.+.++.+.+.|+|||.+++.
T Consensus 301 ~nV~~i~gD~~~~~~~~~~-~~~~FDvIvvn~~-----l-~~~d--~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 301 NNVEFSLKKSFVDNNRVAE-LIPQCDVILVNNF-----L-FDED--LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCEEEEESSCSTTCHHHHH-HGGGCSEEEECCT-----T-CCHH--HHHHHHHHHTTCCTTCEEEES
T ss_pred CceEEEEcCcccccccccc-ccCCCCEEEEeCc-----c-cccc--HHHHHHHHHHhCCCCeEEEEe
Confidence 578888887652 1211 1357999997532 1 1111 245678999999999999874
No 265
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=87.96 E-value=0.48 Score=36.53 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++.++++|+|||.+++.
T Consensus 278 ~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 278 ATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 47899999999999998874
No 266
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=87.62 E-value=0.44 Score=36.74 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
..+++.++++|+|||.+++.
T Consensus 280 ~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 280 LKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 46899999999999998874
No 267
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=86.94 E-value=1.3 Score=34.27 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc--ccHHHHHHHHHhc
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL--FQASYFELMSRAL 61 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L--~t~eF~~~~~~~L 61 (132)
++++++.+|+.+.-. ..++||+|++|.+=.. -.+....+ .-.++++.+++.|
T Consensus 268 ~~i~~~~~D~~~~~~--~~~~fD~Ii~npPyg~-r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 268 DKIKFIQGDATQLSQ--YVDSVDFAISNLPYGL-KIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp GGCEEEECCGGGGGG--TCSCEEEEEEECCCC-------CCHHHHHHHHHHHHHHHE
T ss_pred CceEEEECChhhCCc--ccCCcCEEEECCCCCc-ccCcchhHHHHHHHHHHHHHHHc
Confidence 478999999988643 3578999999864110 00111111 1267889999999
No 268
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=86.04 E-value=0.26 Score=39.68 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=37.1
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|..+.--...-..+|+|++..+ . -... -.+.++.+.+.|+|||.+++.
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-----~-F~pd--l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNF-----A-FGPE--VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCT-----T-CCHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEccc-----c-cCch--HHHHHHHHHHcCCCCcEEEEe
Confidence 4689999999765321101136999998642 1 0111 245567788999999999974
No 269
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=85.28 E-value=0.9 Score=33.78 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=27.5
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
+++||+|+++..-.+ -.... -...++.+++.| |||.+++..
T Consensus 108 ~~~fD~Vv~~~~l~~---~~~~~--~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 108 AGHFDFVLNDRLINR---FTTEE--ARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TTCCSEEEEESCGGG---SCHHH--HHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCCccEEEEhhhhHh---CCHHH--HHHHHHHHHHhC-cCcEEEEEe
Confidence 468999998743110 01111 245789999999 999999864
No 270
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=84.92 E-value=0.93 Score=34.49 Aligned_cols=55 Identities=11% Similarity=-0.059 Sum_probs=34.4
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
+|++++.+|..+. . -..+|+|+....-. ..+ .-....+++.++++|+|||.+++.
T Consensus 240 ~~v~~~~~d~~~~--~--~~~~D~v~~~~vlh----~~~-d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 240 DRMRGIAVDIYKE--S--YPEADAVLFCRILY----SAN-EQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp TTEEEEECCTTTS--C--CCCCSEEEEESCGG----GSC-HHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCEEEEeCccccC--C--CCCCCEEEEechhc----cCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4688888887653 1 12248888642211 011 011367899999999999998653
No 271
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=84.84 E-value=0.81 Score=34.77 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=33.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCC---CcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRP---GGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gil~~~ 70 (132)
++++++.+|..+ . .+ .||+|+.-. ... .+. .-...+++.++++|+| ||.+++.
T Consensus 231 ~~v~~~~~d~~~---~-~p-~~D~v~~~~~lh~-----~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 231 NNLTYVGGDMFT---S-IP-NADAVLLKYILHN-----WTD-KDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp TTEEEEECCTTT---C-CC-CCSEEEEESCGGG-----SCH-HHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred CCcEEEeccccC---C-CC-CccEEEeehhhcc-----CCH-HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 457777777644 2 12 388888532 111 010 0123889999999999 9988764
No 272
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=84.76 E-value=1.2 Score=35.10 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCcEEEEccHHHHhcC--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSG--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++++++.+|+.+++.. ..+++||+|++|.+-. . + .++.+.+. .++|++++.+.
T Consensus 334 ~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~-----g---~--~~~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA-----G---A--AGVMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT-----C---C--HHHHHHHH-HHCCSEEEEEE
T ss_pred CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCc-----c---H--HHHHHHHH-hcCCCeEEEEE
Confidence 3799999999887654 1346899999986422 1 1 25666665 48999998764
No 273
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=84.22 E-value=0.44 Score=39.19 Aligned_cols=84 Identities=11% Similarity=-0.044 Sum_probs=45.3
Q ss_pred cEEEEccHHHHhcCCCCCeecEEEEcCCCCC--CCC--------------------CCCcccccHHHHHHHHHhcCCCcE
Q psy4593 9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPG--RVV--------------------CPAESLFQASYFELMSRALRPGGI 66 (132)
Q Consensus 9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~--~~~--------------------~~~~~L~t~eF~~~~~~~L~p~Gi 66 (132)
+.++.+|....-.. ...+||+||.+.+=.. +.. .++..-..-.|++.+.+.|+|||.
T Consensus 312 i~i~~gDtL~~~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 312 FGKKNADSFLDDQH-PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp CCSSSCCTTTSCSC-TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred cceeccchhcCccc-ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 44467776543222 3468999999864110 000 111111223699999999999999
Q ss_pred EEEec--CCCCCChHHHHHHHHHHHhhCC
Q psy4593 67 VCSQA--GTLWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 67 l~~~~--~~~~~~~~~~~~~~~~l~~vF~ 93 (132)
+++=. +..+........+.+.|.+.+.
T Consensus 391 ~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 391 MALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp EEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred EEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 76432 1111221234556666665543
No 274
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=83.53 E-value=1.7 Score=34.03 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.0
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC--CcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP--GGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p--~Gil~~~~ 71 (132)
.+++++.+|+.++.. ..+||+||+|.+=. ......---.++|+.+.+.|++ ||-+.+=+
T Consensus 283 ~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG---~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 283 DVVKLKQMRLQDFKT---NKINGVLISNPPYG---ERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp TTEEEEECCGGGCCC---CCCSCEEEECCCCT---TTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred CceEEEECChHHCCc---cCCcCEEEECCchh---hccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 468999999988533 35899999997422 2222111235688888888876 77766543
No 275
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=80.68 E-value=1.2 Score=33.79 Aligned_cols=54 Identities=9% Similarity=-0.120 Sum_probs=33.1
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC---CcEEEEe
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP---GGIVCSQ 70 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gil~~~ 70 (132)
++++++.+|..+ . .. .||+|++-..=. ..+. --...+++.++++|+| ||.+++.
T Consensus 236 ~~v~~~~~d~~~---~-~~-~~D~v~~~~vlh----~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 236 ENLNFVGGDMFK---S-IP-SADAVLLKWVLH----DWND-EQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp SSEEEEECCTTT---C-CC-CCSEEEEESCGG----GSCH-HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred CCcEEEeCccCC---C-CC-CceEEEEccccc----CCCH-HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 457777777654 2 12 488888532111 0010 0123889999999999 9988763
No 276
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=79.78 E-value=1.6 Score=38.27 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=36.5
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccccc---HHHHHHHHHhcCCCcEEEE
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQ---ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~Gil~~ 69 (132)
-++++++.+|+.+. .. ..+.||+|+.-.. -.++-. ..|++.+++.|+|| ++++
T Consensus 777 l~nVefiqGDa~dL-p~-~d~sFDlVV~~eV--------LeHL~dp~l~~~L~eI~RvLKPG-~LII 832 (950)
T 3htx_A 777 VKSATLYDGSILEF-DS-RLHDVDIGTCLEV--------IEHMEEDQACEFGEKVLSLFHPK-LLIV 832 (950)
T ss_dssp CSEEEEEESCTTSC-CT-TSCSCCEEEEESC--------GGGSCHHHHHHHHHHHHHTTCCS-EEEE
T ss_pred CCceEEEECchHhC-Cc-ccCCeeEEEEeCc--------hhhCChHHHHHHHHHHHHHcCCC-EEEE
Confidence 35789999998773 22 4578999997421 112222 35899999999999 5544
No 277
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=79.25 E-value=5.7 Score=24.98 Aligned_cols=52 Identities=8% Similarity=-0.114 Sum_probs=33.5
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++.....++|+||+|..-| .+ ..-..++.+.+++.-..--++++
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~D~~l~---~~---~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 35 CFASAESFMRQQISDDAIGMIIEAHLE---DK---KDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp EESSHHHHTTSCCCTTEEEEEEETTGG---GB---TTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EeCCHHHHHHHHhccCCCEEEEeCcCC---CC---CccHHHHHHHHHhCCCCCCEEEE
Confidence 456788877765567899999998655 11 02246778888776433345544
No 278
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=78.77 E-value=4.3 Score=33.26 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=48.1
Q ss_pred CCcEEEEccHHHH--hcCCCCCeecEEEEcCC-CCCCCC---------------CCCcccccHHHHHHHHHhcC-CCcEE
Q psy4593 7 YPVLSARQDCTDF--MSGPVKNMCGLVVSGAA-GPGRVV---------------CPAESLFQASYFELMSRALR-PGGIV 67 (132)
Q Consensus 7 ~rv~v~~~Dg~~~--l~~~~~~~yDvIi~D~~-dp~~~~---------------~~~~~L~t~eF~~~~~~~L~-p~Gil 67 (132)
++++++.+|.... -.. ...+||+||.+.+ ...+.. -++..-..-.|++.+.+.|+ |||.+
T Consensus 276 ~~~~I~~gDtL~~d~p~~-~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~ 354 (542)
T 3lkd_A 276 ENQFLHNADTLDEDWPTQ-EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM 354 (542)
T ss_dssp GGEEEEESCTTTSCSCCS-SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred CccceEecceeccccccc-ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence 4678999997754 122 3578999998864 111000 00111112359999999999 99988
Q ss_pred EEecCCCC-CChHHHHHHHHHHHhhCC
Q psy4593 68 CSQAGTLW-YSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 68 ~~~~~~~~-~~~~~~~~~~~~l~~vF~ 93 (132)
++=..+.+ ........+.+.|.+.+.
T Consensus 355 a~VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 355 AIVLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp EEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred EEEecchHhhCCchhHHHHHHHHhCCc
Confidence 64221111 111223556666655543
No 279
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=78.01 E-value=0.69 Score=34.18 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=24.2
Q ss_pred CCcEEEEccHHHHhcCCCC--CeecEEEEcCCC
Q psy4593 7 YPVLSARQDCTDFMSGPVK--NMCGLVVSGAAG 37 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~--~~yDvIi~D~~d 37 (132)
.|++++.+|+.+++....+ ++||+|++|..-
T Consensus 139 ~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 139 ARINLHFGNAAEQMPALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp TTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred cCeEEEECCHHHHHHhhhccCCCccEEEECCCC
Confidence 4699999999999864222 689999999643
No 280
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=77.40 E-value=5.4 Score=24.70 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=28.0
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++.....++|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 37 ~~~~~~a~~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 37 AADGVDALELLGGFTPDLMICDIAMPR--------MNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp ESCHHHHHHHHTTCCCSEEEECCC-------------CHHHHHHHHHTTCCCCEEEE
T ss_pred eCCHHHHHHHHhcCCCCEEEEecCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 455555554433467999999986551 2246788888875433334444
No 281
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=76.69 E-value=1.8 Score=33.93 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=36.9
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC--CcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP--GGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p--~Gil~~~~ 71 (132)
.+++++.+|+.+... ..+||+||+|.+=. ......---.++|+.+.+.|++ ||-+.+=+
T Consensus 290 ~~I~~~~~D~~~~~~---~~~fD~Iv~NPPYg---~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 290 DLITFRQLQVADFQT---EDEYGVVVANPPYG---ERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp TCSEEEECCGGGCCC---CCCSCEEEECCCCC---CSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CceEEEECChHhCCC---CCCCCEEEECCCCc---cccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 468999999988533 35899999997421 1111001124577777777765 77766543
No 282
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=75.68 E-value=12 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=31.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++....--++++
T Consensus 32 ~~~~~~~a~~~l~~~~~dliild~~l~~--------~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 32 SFASATEALAGLSADFAGIVISDIRMPG--------MDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp EESCHHHHHHTCCTTCCSEEEEESCCSS--------SCHHHHHHHHHHHCTTSCEEEE
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHhhCCCCCEEEE
Confidence 4456666666544567999999986551 2246788888876433344444
No 283
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=75.53 E-value=7.7 Score=27.81 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=25.2
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+|.+..|..-. . + ..+++.+++.|+|||.+++-
T Consensus 103 ~~d~~~~D~v~~----~----l--~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 103 RPSFTSIDVSFI----S----L--DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCSEEEECCSSS----C----G--GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEEEEEhh----h----H--HHHHHHHHHhccCCCEEEEE
Confidence 367777775321 1 1 67899999999999998864
No 284
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=74.68 E-value=7.4 Score=24.87 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=30.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 51 ~~~~~~~al~~l~~~~~dlii~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 51 QAKNGQEAIQLLEKESVDIAILDVEMPV--------KTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp EESSHHHHHHHHTTSCCSEEEECSSCSS--------SCHHHHHHHHHHTTCSCEEEEE
T ss_pred EECCHHHHHHHhhccCCCEEEEeCCCCC--------CcHHHHHHHHHHhCCCCeEEEE
Confidence 3455555554433467999999986551 2246788888876433334433
No 285
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=73.22 E-value=5.9 Score=24.96 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 16 CTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 16 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+.+.. ....+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 39 a~~~~~~-~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 39 GLRIFTE-NCNSIDVVITDMKMPK--------LSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp HHHHHHH-TTTTCCEEEEESCCSS--------SCHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHh-CCCCCCEEEEeCCCCC--------CcHHHHHHHHHHhCCCCeEEEE
Confidence 3444442 2468999999987551 2246788888876433344443
No 286
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=73.07 E-value=11 Score=24.17 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=28.2
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++....--++++
T Consensus 44 ~~~~~~a~~~l~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 92 (153)
T 3hv2_A 44 ARDATQALQLLASREVDLVISAAHLPQ--------MDGPTLLARIHQQYPSTTRILL 92 (153)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHHHCTTSEEEEE
T ss_pred ECCHHHHHHHHHcCCCCEEEEeCCCCc--------CcHHHHHHHHHhHCCCCeEEEE
Confidence 344544443322357999999987551 2246788888774433334443
No 287
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=71.78 E-value=4.3 Score=25.08 Aligned_cols=40 Identities=10% Similarity=-0.045 Sum_probs=25.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+||+|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~a~~~l~~~~~dlii~D~~l~~--------~~g~~~~~~l~~~ 72 (127)
T 3i42_A 33 VMSGTDALHAMSTRGYDAVFIDLNLPD--------TSGLALVKQLRAL 72 (127)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESBCSS--------SBHHHHHHHHHHS
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHhh
Confidence 345554443322356999999986551 2246888888876
No 288
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=71.68 E-value=13 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=20.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..+|+||+|..-|. .-..++.+.+++.
T Consensus 59 ~~~dlvi~D~~l~~--------~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 59 RWPSIICIDINMPG--------INGWELIDLFKQH 85 (146)
T ss_dssp CCCSEEEEESSCSS--------SCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCC--------CCHHHHHHHHHHh
Confidence 67999999987652 2246888888873
No 289
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=71.52 E-value=16 Score=22.80 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=33.8
Q ss_pred EEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~ 69 (132)
...|+.+.++.... ..+|+||+|..-| +..-..++.+.+++ ....--++++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~-------~~~~g~~~~~~l~~~~~~~~~~ii~l 87 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIMDIAFP-------VEKEGLEVLSAIRNNSRTANTPVIIA 87 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEECSCSS-------SHHHHHHHHHHHHHSGGGTTCCEEEE
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeCCCC-------CCCcHHHHHHHHHhCcccCCCCEEEE
Confidence 55678888777556 7899999998644 01224677888877 4444445554
No 290
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=71.46 E-value=6.8 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHH
Q psy4593 51 ASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~ 89 (132)
...++.+++.|+|||.|++...+.....+....+.+..+
T Consensus 180 ~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~ 218 (277)
T 3giw_A 180 VGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYA 218 (277)
T ss_dssp HHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHH
Confidence 468999999999999999863232223333444444443
No 291
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=71.14 E-value=5.3 Score=25.09 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=24.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++
T Consensus 36 ~~~~~~a~~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~ 74 (140)
T 3grc_A 36 VHSAAQALEQVARRPYAAMTVDLNLPD--------QDGVSLIRALRR 74 (140)
T ss_dssp ECSHHHHHHHHHHSCCSEEEECSCCSS--------SCHHHHHHHHHT
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHh
Confidence 345555443322357999999987652 224677777776
No 292
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=71.12 E-value=7.5 Score=24.54 Aligned_cols=40 Identities=5% Similarity=-0.044 Sum_probs=25.4
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~~l~~--------~~g~~~~~~lr~ 75 (144)
T 3kht_A 36 FVDNGAKALYQVQQAKYDLIILDIGLPI--------ANGFEVMSAVRK 75 (144)
T ss_dssp EESSHHHHHHHHTTCCCSEEEECTTCGG--------GCHHHHHHHHHS
T ss_pred EECCHHHHHHHhhcCCCCEEEEeCCCCC--------CCHHHHHHHHHh
Confidence 3445555554433467999999986551 224677777776
No 293
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=71.10 E-value=6.7 Score=24.65 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=28.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+||+|. -|. .-..++.+.+++....--++++
T Consensus 34 ~~~~~~a~~~l~~~~~dlvi~d~-~~~--------~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 34 AKNEQEAFTFLRREKIDLVFVDV-FEG--------EESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp ESSHHHHHHHHTTSCCSEEEEEC-TTT--------HHHHHHHHHHHHHCTTCEEEEE
T ss_pred ECCHHHHHHHHhccCCCEEEEeC-CCC--------CcHHHHHHHHHHHCCCCCEEEE
Confidence 34454444332336799999998 662 1235777887776443344444
No 294
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=70.57 E-value=9.1 Score=24.24 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=29.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++. .|+-
T Consensus 34 ~~~~~~~al~~~~~~~~dlvllD~~lp~--------~~g~~l~~~l~~~-~~~~ 78 (141)
T 3cu5_A 34 QADDGINAIQIALKHPPNVLLTDVRMPR--------MDGIELVDNILKL-YPDC 78 (141)
T ss_dssp EESSHHHHHHHHTTSCCSEEEEESCCSS--------SCHHHHHHHHHHH-CTTC
T ss_pred ecccHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhh-CCCC
Confidence 4667666655433467999999987652 1246788888774 3443
No 295
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=70.34 E-value=13 Score=24.82 Aligned_cols=50 Identities=4% Similarity=-0.116 Sum_probs=31.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...||.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 36 ~~~~~~~al~~~~~~~~dlvl~D~~lp~--------~~g~~~~~~l~~~~~~~~ii~l 85 (184)
T 3rqi_A 36 QAHNKDEALKLAGAEKFEFITVXLHLGN--------DSGLSLIAPLCDLQPDARILVL 85 (184)
T ss_dssp EECSHHHHHHHHTTSCCSEEEECSEETT--------EESHHHHHHHHHHCTTCEEEEE
T ss_pred EeCCHHHHHHHHhhCCCCEEEEeccCCC--------ccHHHHHHHHHhcCCCCCEEEE
Confidence 3456666554434467999999987662 2246788888875433334444
No 296
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=69.98 E-value=10 Score=24.22 Aligned_cols=55 Identities=11% Similarity=-0.098 Sum_probs=32.6
Q ss_pred CCcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 7 YPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...+++ ..++.+.++......+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 29 ~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 85 (153)
T 3cz5_A 29 PGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPG--------PGGIEATRHIRQWDGAARILIF 85 (153)
T ss_dssp TTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSS--------SCHHHHHHHHHHHCTTCCEEEE
T ss_pred CCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC--------CCHHHHHHHHHHhCCCCeEEEE
Confidence 344543 556555544322356999999986551 1246788888877443345554
No 297
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=69.88 E-value=1.5 Score=31.84 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=31.9
Q ss_pred EEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 11 SARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 11 v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
++.+|..+.. ......+||+|+.-..-.+ ..+... --...++.+++.|+|||.+++.
T Consensus 138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~--i~~~~~-~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMEC--ACCSLD-AYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp EEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHH-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEeccccCCCCCCccccCCCCEeeehHHHHH--hcCCHH-HHHHHHHHHHHHcCCCcEEEEE
Confidence 5666654421 1102357999986432100 011100 0145788899999999999875
No 298
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=69.75 E-value=2.3 Score=33.18 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=36.7
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC--CcEEEEec
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP--GGIVCSQA 71 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p--~Gil~~~~ 71 (132)
.+++++.+|+.++.. +.+||+||+|.+=. ......---.++|+.+.+.|++ ||.+.+=+
T Consensus 284 ~~i~~~~~D~~~l~~---~~~~D~Iv~NPPyg---~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 284 EYIEFNVGDATQFKS---EDEFGFIITNPPYG---ERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp GGEEEEECCGGGCCC---SCBSCEEEECCCCC---CSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred CceEEEECChhhcCc---CCCCcEEEECCCCc---CccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 368899999888533 35899999997421 1111011125678877777776 66665533
No 299
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=69.29 E-value=11 Score=23.40 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=31.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++......+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 44 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 44 VSETDDFLKGPPADTRPGIVILDLGGGD--------LLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp EECGGGGGGCCCTTCCCSEEEEEEETTG--------GGGSTTHHHHHGGGTTCCEEEE
T ss_pred EeccHHHHHHHHhccCCCEEEEeCCCCC--------chHHHHHHHHHhhCCCCcEEEE
Confidence 4567777776655678999999986552 1123556777665443345544
No 300
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=68.74 E-value=10 Score=23.71 Aligned_cols=50 Identities=10% Similarity=0.209 Sum_probs=30.0
Q ss_pred EEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++.... ..+|+||+|..-|. .-..++.+.+++....--++++
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 94 (138)
T 2b4a_A 44 VHPSGSAFFQHRSQLSTCDLLIVSDQLVD--------LSIFSLLDIVKEQTKQPSVLIL 94 (138)
T ss_dssp EESSHHHHHHTGGGGGSCSEEEEETTCTT--------SCHHHHHHHHTTSSSCCEEEEE
T ss_pred EeCCHHHHHHHHHhCCCCCEEEEeCCCCC--------CCHHHHHHHHHhhCCCCCEEEE
Confidence 34566666655344 67999999986551 1235777877774333334443
No 301
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=68.32 E-value=2.2 Score=28.23 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=27.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..||.+.++......||+|++|..-|. +-..|+.+.+++
T Consensus 43 a~~g~~al~~~~~~~~DlillD~~MP~--------mdG~el~~~ir~ 81 (134)
T 3to5_A 43 ADDGLTALPMLKKGDFDFVVTDWNMPG--------MQGIDLLKNIRA 81 (134)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESCCSS--------SCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhCCCCEEEEcCCCCC--------CCHHHHHHHHHh
Confidence 567777665533468999999998772 335677888875
No 302
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=68.26 E-value=11 Score=23.99 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=24.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..++.+.++......+|+||+|..-|. .-..++.+.+++..
T Consensus 37 ~~~~~~a~~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 37 FTSPLDALEALKGTSVQLVISDMRMPE--------MGGEVFLEQVAKSY 77 (154)
T ss_dssp ESCHHHHHHHHTTSCCSEEEEESSCSS--------SCHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHhcCCCCEEEEecCCCC--------CCHHHHHHHHHHhC
Confidence 344444443323356999999986551 12357777777654
No 303
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=68.03 E-value=6.1 Score=24.41 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=26.4
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...||.+.++.....++|+|++|..-|. .-..++.+.+++.
T Consensus 31 ~~~~~~~al~~l~~~~~dlvllD~~~p~--------~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 31 EAENGQIALEKLSEFTPDLIVLXIMMPV--------MDGFTVLKKLQEK 71 (122)
T ss_dssp EESSHHHHHHHHTTBCCSEEEECSCCSS--------SCHHHHHHHHHTS
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeccCCC--------CcHHHHHHHHHhc
Confidence 4456666554434468999999987662 2246777777654
No 304
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=67.78 E-value=0.68 Score=36.85 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=24.3
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG 37 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d 37 (132)
.+++++.+|+.+++......+||+|++|..-
T Consensus 143 ~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 143 KDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp CEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred CcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 5799999999998764113589999999753
No 305
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=66.70 E-value=14 Score=22.93 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=28.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++.- ++--++
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~~-~~~~ii 83 (137)
T 3hdg_A 36 SAGDGEEGERLFGLHAPDVIITDIRMPK--------LGGLEMLDRIKAGG-AKPYVI 83 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSSCSS--------SCHHHHHHHHHHTT-CCCEEE
T ss_pred EECCHHHHHHHHhccCCCEEEEeCCCCC--------CCHHHHHHHHHhcC-CCCcEE
Confidence 3445544443322357999999987551 22467888887754 444333
No 306
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=66.43 E-value=13 Score=22.66 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=29.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~ 69 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++. .|+ -++++
T Consensus 32 ~~~~~~~~~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~-~~~~~ii~~ 81 (126)
T 1dbw_A 32 MHQSAEAFLAFAPDVRNGVLVTDLRMPD--------MSGVELLRNLGDL-KINIPSIVI 81 (126)
T ss_dssp EESCHHHHHHHGGGCCSEEEEEECCSTT--------SCHHHHHHHHHHT-TCCCCEEEE
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCCCC--------CCHHHHHHHHHhc-CCCCCEEEE
Confidence 3455655554423357999999987552 1235778888765 344 34444
No 307
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=66.15 E-value=4.8 Score=31.46 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=37.0
Q ss_pred EEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCccccc--------------------------------HHHHHHH
Q psy4593 11 SARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQ--------------------------------ASYFELM 57 (132)
Q Consensus 11 v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t--------------------------------~eF~~~~ 57 (132)
.+.+.+..|-.+. .++++|+|+.-..=.|. ...+..|.. ..|++..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWl-s~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWL-SQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBC-SSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeee-ccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444343 56899999987654441 122322211 2367888
Q ss_pred HHhcCCCcEEEEec
Q psy4593 58 SRALRPGGIVCSQA 71 (132)
Q Consensus 58 ~~~L~p~Gil~~~~ 71 (132)
++.|+|||.++...
T Consensus 212 a~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 212 AAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEE
Confidence 99999999999763
No 308
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=66.11 E-value=22 Score=31.07 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=27.9
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCC--ChHHHHHHHHHHHhhCC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTLWY--SLDCVGNTLQHCASVFP 93 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~~~--~~~~~~~~~~~l~~vF~ 93 (132)
...|++.+.+.|+|||.+++-..+.+. .......+.+.|.+.+.
T Consensus 444 y~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~~ 489 (878)
T 3s1s_A 444 EALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNFG 489 (878)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCCC
Confidence 346899999999999998864322222 22234556666665554
No 309
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=65.94 E-value=8.4 Score=23.98 Aligned_cols=54 Identities=7% Similarity=-0.122 Sum_probs=28.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+||+|..-| .......-..++.+.+++....--++++
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~~~---~~~~~~~~g~~~~~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 33 LSSPVSLSTVLREENPEVVLLDMNFT---SGINNGNEGLFWLHEIKRQYRDLPVVLF 86 (140)
T ss_dssp ECCHHHHHHHHHHSCEEEEEEETTTT---C-----CCHHHHHHHHHHHCTTCCEEEE
T ss_pred eCCHHHHHHHHHcCCCCEEEEeCCcC---CCCCCCccHHHHHHHHHhhCcCCCEEEE
Confidence 34444443332235699999998644 1000112346788888876444445554
No 310
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=65.81 E-value=9.9 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCcEEEEec
Q psy4593 53 YFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 53 F~~~~~~~L~p~Gil~~~~ 71 (132)
|++..++.|+|||.+++..
T Consensus 207 FL~~Ra~eL~pGG~mvl~~ 225 (384)
T 2efj_A 207 FLRIHSEELISRGRMLLTF 225 (384)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEE
Confidence 4788899999999999864
No 311
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=65.62 E-value=9.1 Score=29.76 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=37.3
Q ss_pred EEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcc--------------------cccH-------HHHHHHHHhc
Q psy4593 10 LSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAES--------------------LFQA-------SYFELMSRAL 61 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~--------------------L~t~-------eF~~~~~~~L 61 (132)
..+.+.+..|-.+. .++++|+|+.-..=.|. ...+.. .|.. .|++..++.|
T Consensus 121 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWl-s~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL 199 (359)
T 1m6e_X 121 CFINGVPGSFYGRLFPRNTLHFIHSSYSLMWL-SQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV 199 (359)
T ss_dssp EEEEEEESCSSSCCSCTTCBSCEEEESCTTBC-SSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred EEEEecchhhhhccCCCCceEEEEehhhhhhc-ccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555553 56889999976553331 111111 3332 3578889999
Q ss_pred CCCcEEEEe
Q psy4593 62 RPGGIVCSQ 70 (132)
Q Consensus 62 ~p~Gil~~~ 70 (132)
+|||.++..
T Consensus 200 ~pGG~mvl~ 208 (359)
T 1m6e_X 200 VPGGRMVLT 208 (359)
T ss_dssp CTTCEEEEE
T ss_pred cCCceEEEE
Confidence 999999976
No 312
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=65.47 E-value=14 Score=23.71 Aligned_cols=40 Identities=8% Similarity=-0.014 Sum_probs=25.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++.
T Consensus 37 ~~~~~~al~~l~~~~~dlii~D~~l~~--------~~g~~~~~~lr~~ 76 (154)
T 3gt7_A 37 VRNGREAVRFLSLTRPDLIISDVLMPE--------MDGYALCRWLKGQ 76 (154)
T ss_dssp ESSHHHHHHHHTTCCCSEEEEESCCSS--------SCHHHHHHHHHHS
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHhC
Confidence 345555544333467999999987662 2246777777764
No 313
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=65.03 E-value=18 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=31.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 33 ~~~~~~~al~~~~~~~~dlvl~D~~lp~--------~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 33 TFDCASTFLEHRRPEQHGCLVLDMRMPG--------MSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp EESSHHHHHHHCCTTSCEEEEEESCCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred EcCCHHHHHHhhhccCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 4466777665534567999999987662 2245778888775332334444
No 314
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=64.61 E-value=14 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=25.3
Q ss_pred CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCC
Q psy4593 5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAG 37 (132)
Q Consensus 5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d 37 (132)
.+|+|..+.+|+.++.-. ...+|+|++|...
T Consensus 250 ~~~~V~~~~~d~~~~~~~--~~~~D~vvsDm~~ 280 (375)
T 4auk_A 250 DTGQVTWLREDGFKFRPT--RSNISWMVCDMVE 280 (375)
T ss_dssp TTTCEEEECSCTTTCCCC--SSCEEEEEECCSS
T ss_pred cCCCeEEEeCccccccCC--CCCcCEEEEcCCC
Confidence 578999999999887533 4689999999753
No 315
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=63.93 E-value=11 Score=23.96 Aligned_cols=41 Identities=5% Similarity=0.025 Sum_probs=24.3
Q ss_pred EccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 13 RQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 13 ~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..++.+.++... ...||+||+|..-|. .-..++.+.+++.-
T Consensus 33 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~~ 74 (151)
T 3kcn_A 33 CESGPEALACIKKSDPFSVIMVDMRMPG--------MEGTEVIQKARLIS 74 (151)
T ss_dssp ESSHHHHHHHHHHSCCCSEEEEESCCSS--------SCHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHcCCCCCEEEEeCCCCC--------CcHHHHHHHHHhcC
Confidence 345554443321 234899999987651 22467777777654
No 316
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=63.82 E-value=10 Score=22.82 Aligned_cols=49 Identities=8% Similarity=-0.097 Sum_probs=28.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++.-..-.++++
T Consensus 30 ~~~~~~a~~~~~~~~~dlil~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 30 AEDAKEADYYLNEHIPDIAIVDLGLPD--------EDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSCCSS--------SCHHHHHHHHHHTTCCSCEEEE
T ss_pred eCCHHHHHHHHhccCCCEEEEecCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 445555443322357999999987652 1235778887765444445554
No 317
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=63.40 E-value=7.3 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=27.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
..|+.+.++......+|+|++|..-|. .-..++.+.+++. .|+-
T Consensus 35 ~~~~~~al~~~~~~~~dlvilD~~lp~--------~~g~~~~~~l~~~-~~~~ 78 (133)
T 3b2n_A 35 TDNGLDAMKLIEEYNPNVVILDIEMPG--------MTGLEVLAEIRKK-HLNI 78 (133)
T ss_dssp ESCHHHHHHHHHHHCCSEEEECSSCSS--------SCHHHHHHHHHHT-TCSC
T ss_pred cCCHHHHHHHHhhcCCCEEEEecCCCC--------CCHHHHHHHHHHH-CCCC
Confidence 456665554322356999999987651 2246788888875 3443
No 318
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.38 E-value=9.5 Score=23.34 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=29.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++.....++|+|++|..-|. .-..++.+.+++. .+--++++
T Consensus 32 ~~~~~~al~~~~~~~~dlii~D~~~p~--------~~g~~~~~~lr~~-~~~~ii~~ 79 (120)
T 3f6p_A 32 AHDGNEAVEMVEELQPDLILLDIMLPN--------KDGVEVCREVRKK-YDMPIIML 79 (120)
T ss_dssp ESSHHHHHHHHHTTCCSEEEEETTSTT--------THHHHHHHHHHTT-CCSCEEEE
T ss_pred eCCHHHHHHHHhhCCCCEEEEeCCCCC--------CCHHHHHHHHHhc-CCCCEEEE
Confidence 456666554433467999999987662 1245777777764 33345554
No 319
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=63.28 E-value=11 Score=22.57 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=27.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++.....++|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 31 ~~~~~~a~~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 31 AENGEEALKKFFSGNYDLVILDIEMPG--------ISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSCCSS--------SCHHHHHHHHHHHCTTCCEEEE
T ss_pred eCCHHHHHHHHhcCCCCEEEEECCCCC--------CCHHHHHHHHHccCCCCeEEEE
Confidence 445555443322356999999986551 1235777777765332334444
No 320
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=63.26 E-value=9 Score=23.65 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=30.8
Q ss_pred CcEE--EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 8 PVLS--ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 8 rv~v--~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
..++ ...++.+.++.....++|+|++|..-|. .-..++.+.+++...+.-
T Consensus 27 ~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~--------~~g~~~~~~l~~~~~~~~ 78 (130)
T 1dz3_A 27 DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH--------LDGLAVLERIRAGFEHQP 78 (130)
T ss_dssp TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS--------SCHHHHHHHHHHHCSSCC
T ss_pred CceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC--------CCHHHHHHHHHhcCCCCC
Confidence 4444 3556666554422356999999987551 124678888887544554
No 321
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=62.68 E-value=9.5 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=18.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..+|+||+|..-|. .-..++.+.+++
T Consensus 50 ~~~dlii~d~~l~~--------~~g~~~~~~l~~ 75 (142)
T 3cg4_A 50 GFSGVVLLDIMMPG--------MDGWDTIRAILD 75 (142)
T ss_dssp CCCEEEEEESCCSS--------SCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCC--------CCHHHHHHHHHh
Confidence 56999999986551 224678888887
No 322
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=62.42 E-value=14 Score=22.56 Aligned_cols=50 Identities=8% Similarity=-0.265 Sum_probs=27.9
Q ss_pred EccHHHHhcCCCCC-eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKN-MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++..... .+|+||+|..-| .+ .-..++.+.+++.-..--++++
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~d~~l~---~~----~~g~~~~~~l~~~~~~~~ii~~ 85 (132)
T 2rdm_A 35 VSSGAKAIEMLKSGAAIDGVVTDIRFC---QP----PDGWQVARVAREIDPNMPIVYI 85 (132)
T ss_dssp ESSHHHHHHHHHTTCCCCEEEEESCCS---SS----SCHHHHHHHHHHHCTTCCEEEE
T ss_pred ECCHHHHHHHHHcCCCCCEEEEeeeCC---CC----CCHHHHHHHHHhcCCCCCEEEE
Confidence 34444444332223 799999998654 11 1235778888876433345544
No 323
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.92 E-value=11 Score=23.25 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=25.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~ 72 (133)
T 3nhm_A 33 AADGASGLQQALAHPPDVLISDVNMDG--------MDGYALCGHFRSE 72 (133)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSSCSS--------SCHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhC
Confidence 345555443322357999999986551 2246788888875
No 324
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=61.39 E-value=25 Score=21.42 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=26.6
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
...++.+.++..... +|+||+|..-|. .-..++.+.+++.-
T Consensus 32 ~~~~~~~~~~~~~~~-~dlvi~D~~l~~--------~~g~~~~~~l~~~~ 72 (135)
T 3eqz_A 32 AFQHPRAFLTLSLNK-QDIIILDLMMPD--------MDGIEVIRHLAEHK 72 (135)
T ss_dssp EESCHHHHTTSCCCT-TEEEEEECCTTT--------THHHHHHHHHHHTT
T ss_pred eecCHHHHHHhhccC-CCEEEEeCCCCC--------CCHHHHHHHHHhCC
Confidence 445666666553344 999999987551 22467777777644
No 325
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=60.98 E-value=15 Score=28.79 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=34.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
...|++|+|++-... ..++..-...++.+.+++.++.+|-+++.+-+
T Consensus 178 ~~~D~LI~EsTy~~~-~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa 224 (431)
T 3iek_A 178 PLADLVLAEGTYGDR-PHRPYRETVREFLEILEKTLSQGGKVLIPTFA 224 (431)
T ss_dssp CCCSEEEEECTTTTC-CCCCHHHHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCccEEEEEcccCCc-CCCChHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 468999999974310 22344555678899999999999999886533
No 326
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=60.77 E-value=17 Score=23.03 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCS 69 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~ 69 (132)
...+|+||+|..-|. .-..++.+.+++ ....--++++
T Consensus 57 ~~~~dliilD~~l~~--------~~g~~~~~~lr~~~~~~~~pii~~ 95 (152)
T 3heb_A 57 AGRAQLVLLDLNLPD--------MTGIDILKLVKENPHTRRSPVVIL 95 (152)
T ss_dssp TTCBEEEEECSBCSS--------SBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred cCCCCEEEEeCCCCC--------CcHHHHHHHHHhcccccCCCEEEE
Confidence 468999999987552 224678888877 3333335544
No 327
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=60.76 E-value=11 Score=23.59 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=27.1
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++.. ++.
T Consensus 29 ~~~~~~~a~~~~~~~~~dlvl~D~~lp~--------~~g~~~~~~l~~~~-~~~ 73 (139)
T 2jk1_A 29 TAQGAEAAIAILEEEWVQVIICDQRMPG--------RTGVDFLTEVRERW-PET 73 (139)
T ss_dssp EESSHHHHHHHHHHSCEEEEEEESCCSS--------SCHHHHHHHHHHHC-TTS
T ss_pred EcCCHHHHHHHHhcCCCCEEEEeCCCCC--------CcHHHHHHHHHHhC-CCC
Confidence 3455555443322356999999987652 12357788887753 443
No 328
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=60.11 E-value=12 Score=22.60 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=24.6
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~a~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~ 72 (123)
T 1xhf_A 33 ATDGAEMHQILSEYDINLVIMDINLPG--------KNGLLLARELREQ 72 (123)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSSCSS--------SCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHhcCCCCEEEEcCCCCC--------CCHHHHHHHHHhC
Confidence 345555443322357999999987652 1235778888776
No 329
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=59.99 E-value=11 Score=23.60 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=29.8
Q ss_pred EEccHHHHhcCCCC-----CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEE
Q psy4593 12 ARQDCTDFMSGPVK-----NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~-----~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~ 69 (132)
...||.+.++.... ..||+|++|..-|. .-..++.+.+++...+. -++++
T Consensus 32 ~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~--------~~G~~~~~~lr~~~~~~~~ii~l 87 (133)
T 2r25_B 32 LACDGQEAFDKVKELTSKGENYNMIFMDVQMPK--------VDGLLSTKMIRRDLGYTSPIVAL 87 (133)
T ss_dssp EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS--------SCHHHHHHHHHHHSCCCSCEEEE
T ss_pred EECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCC--------CChHHHHHHHHhhcCCCCCEEEE
Confidence 35565555443111 57999999987662 12357788888754443 34444
No 330
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=59.99 E-value=34 Score=25.60 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=51.5
Q ss_pred CCCcEEEEc-cHHHHhcCCCCCeecEEEEcCCCCCCCCCCC---cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593 6 GYPVLSARQ-DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA---ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81 (132)
Q Consensus 6 d~rv~v~~~-Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~---~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~ 81 (132)
=+-++...+ |- .++ ...++|+|++|.-.. ++. ++--|..-++.+.+-|++ |-+++-.-++. + +.+
T Consensus 126 wn~v~fk~gvDv-~~~---~~~~~DtllcDIgeS----s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py-~-p~v 194 (267)
T 3p8z_A 126 WNIVKLMSGKDV-FYL---PPEKCDTLLCDIGES----SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY-M-PTV 194 (267)
T ss_dssp TTSEEEECSCCG-GGC---CCCCCSEEEECCCCC----CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC-S-HHH
T ss_pred cCceEEEeccce-eec---CCccccEEEEecCCC----CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC-C-hhH
Confidence 345556655 64 223 346799999997532 222 122233467778889998 78887654553 2 235
Q ss_pred HHHHHHHHhhCCCceE
Q psy4593 82 GNTLQHCASVFPRVAY 97 (132)
Q Consensus 82 ~~~~~~l~~vF~~v~~ 97 (132)
.+.++.|+..|..+.+
T Consensus 195 ~e~l~~lq~~fgg~lV 210 (267)
T 3p8z_A 195 IEHLERLQRKHGGMLV 210 (267)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCEeE
Confidence 5788899999998776
No 331
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=59.45 E-value=14 Score=22.76 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=25.7
Q ss_pred cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q psy4593 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIV 67 (132)
Q Consensus 15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil 67 (132)
++.+.+++ ..+|+||+|..-|. .-..++.+.+++. .|+.-+
T Consensus 37 ~a~~~~~~---~~~dlii~d~~l~~--------~~g~~~~~~l~~~-~~~~~i 77 (134)
T 3f6c_A 37 SAVQRVET---LKPDIVIIDVDIPG--------VNGIQVLETLRKR-QYSGII 77 (134)
T ss_dssp THHHHHHH---HCCSEEEEETTCSS--------SCHHHHHHHHHHT-TCCSEE
T ss_pred HHHHHHHh---cCCCEEEEecCCCC--------CChHHHHHHHHhc-CCCCeE
Confidence 34444444 57999999987651 2246788888875 344333
No 332
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=59.42 E-value=11 Score=23.36 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=25.7
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++.-
T Consensus 32 ~~~~~~~al~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 32 IAATAGEGLAKIENEFFNLALFXIKLPD--------MEGTELLEKAHKLR 73 (132)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSBCSS--------SBHHHHHHHHHHHC
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCC--------CchHHHHHHHHhhC
Confidence 4455555544322357999999986551 22457777777653
No 333
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=59.39 E-value=10 Score=23.56 Aligned_cols=40 Identities=10% Similarity=-0.165 Sum_probs=23.9
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+||+|..-|. .-..++.+.+++.
T Consensus 40 ~~~~~~a~~~l~~~~~dlii~d~~l~~--------~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 40 AYNPFDAGDLLHTVKPDVVMLDLMMVG--------MDGFSICHRIKST 79 (143)
T ss_dssp ECSHHHHHHHHHHTCCSEEEEETTCTT--------SCHHHHHHHHHTS
T ss_pred ECCHHHHHHHHHhcCCCEEEEecccCC--------CcHHHHHHHHHhC
Confidence 344444433322356999999986551 2246778888773
No 334
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=58.84 E-value=9.7 Score=24.59 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=30.5
Q ss_pred EEccHHHHhcCCCCC--eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKN--MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~--~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++..... .+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 66 ~~~~~~~al~~l~~~~~~~dliilD~~l~~--------~~g~~~~~~lr~~~~~~~ii~l 117 (157)
T 3hzh_A 66 TAADGEEAVIKYKNHYPNIDIVTLXITMPK--------MDGITCLSNIMEFDKNARVIMI 117 (157)
T ss_dssp EESSHHHHHHHHHHHGGGCCEEEECSSCSS--------SCHHHHHHHHHHHCTTCCEEEE
T ss_pred EECCHHHHHHHHHhcCCCCCEEEEeccCCC--------ccHHHHHHHHHhhCCCCcEEEE
Confidence 355665555442223 7999999986551 2246788888876543445554
No 335
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=58.61 E-value=12 Score=22.70 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=27.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++ ..+-.++++
T Consensus 32 ~~~~~~~~~~~~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~-~~~~~ii~~ 79 (122)
T 1zgz_A 32 TASGAGLREIMQNQSVDLILLDINLPD--------ENGLMLTRALRE-RSTVGIILV 79 (122)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHT-TCCCEEEEE
T ss_pred ecCHHHHHHHHhcCCCCEEEEeCCCCC--------CChHHHHHHHHh-cCCCCEEEE
Confidence 445555443322356999999987652 123577888877 333334444
No 336
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=58.32 E-value=4.9 Score=26.18 Aligned_cols=38 Identities=5% Similarity=0.042 Sum_probs=24.1
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
.||.+-++.....+||+|++|..-|. . -..|+.+.+++
T Consensus 40 ~~g~eAl~~~~~~~~DlvllDi~mP~----~----~G~el~~~lr~ 77 (123)
T 2lpm_A 40 SRMQEALDIARKGQFDIAIIDVNLDG----E----PSYPVADILAE 77 (123)
T ss_dssp CCHHHHHHHHHHCCSSEEEECSSSSS----C----CSHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCCC----C----CHHHHHHHHHc
Confidence 45555544323468999999998772 1 23466677765
No 337
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.19 E-value=9.5 Score=24.02 Aligned_cols=41 Identities=7% Similarity=0.060 Sum_probs=25.0
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...++.+.++.....++|+|++|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~~a~~~l~~~~~dlvllD~~l~~--------~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 33 HVETGRDAIQFIERSKPQLIILDLKLPD--------MSGEDVLDWINQN 73 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSBCSS--------SBHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHhcCCCEEEEecCCCC--------CCHHHHHHHHHhc
Confidence 3445555544322357999999986552 1235777887765
No 338
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=58.15 E-value=8.8 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=22.7
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
.++.+.++......+|+||+|..-|. .-..++.+.+++
T Consensus 39 ~~~~~a~~~l~~~~~dlii~d~~l~~--------~~g~~~~~~l~~ 76 (147)
T 2zay_A 39 GNAIEAVPVAVKTHPHLIITEANMPK--------ISGMDLFNSLKK 76 (147)
T ss_dssp SSHHHHHHHHHHHCCSEEEEESCCSS--------SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCEEEEcCCCCC--------CCHHHHHHHHHc
Confidence 44444433322246999999986551 123577888776
No 339
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=58.02 E-value=1.9 Score=30.99 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc---------ccHHHH----HHHHHhcCCCcEEEEe
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL---------FQASYF----ELMSRALRPGGIVCSQ 70 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L---------~t~eF~----~~~~~~L~p~Gil~~~ 70 (132)
.++++++.+|+.++--. .+++| .|+.+++- .....+ ....++ +.+.+.|+|+|.+++.
T Consensus 74 ~~~v~~~~~D~~~~~~~-~~~~f-~vv~n~Py-----~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 74 NTRVTLIHQDILQFQFP-NKQRY-KIVGNIPY-----HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CSEEEECCSCCTTTTCC-CSSEE-EEEEECCS-----SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCceEEEECChhhcCcc-cCCCc-EEEEeCCc-----cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 35789999998775322 23688 77777531 111111 122233 6688888888887654
No 340
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=57.95 E-value=38 Score=26.01 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCeecEEEEcCCCCCCCCCCC---cccccHHHHHHHHHhcCCC-cEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPA---ESLFQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~---~~L~t~eF~~~~~~~L~p~-Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
...+|+|++|.-.. ++. +.--|..-++.+.+-|++| |-+++-.-+|+ . +.+.+.++.|+..|..+.+
T Consensus 158 ~~~~D~ivcDigeS----s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY-~-~~v~e~l~~lq~~fgg~lv 228 (321)
T 3lkz_A 158 SECCDTLLCDIGES----SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY-M-PKVIEKMELLQRRYGGGLV 228 (321)
T ss_dssp CCCCSEEEECCCCC----CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT-S-HHHHHHHHHHHHHHCCEEE
T ss_pred CCCCCEEEEECccC----CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC-C-hHHHHHHHHHHHHhCCEeE
Confidence 36799999998733 222 1222334677778899999 89988765553 2 3455788999999998776
No 341
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=57.84 E-value=6.7 Score=24.73 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=26.5
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...|+.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~~al~~~~~~~~dlvl~D~~lp~--------~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 33 RAASGEEALQQIYKNLPDALICDVLLPG--------IDGYTLCKRVRQH 73 (136)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHcC
Confidence 3456666554433467999999987662 2246778887764
No 342
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=57.81 E-value=21 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=24.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++
T Consensus 34 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~--------~~g~~l~~~l~~ 73 (128)
T 1jbe_A 34 EAEDGVDALNKLQAGGYGFVISDWNMPN--------MDGLELLKTIRA 73 (128)
T ss_dssp EESSHHHHHHHHTTCCCCEEEEESCCSS--------SCHHHHHHHHHC
T ss_pred eeCCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHh
Confidence 3455555544323457999999987662 123567777776
No 343
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=57.14 E-value=20 Score=21.89 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=20.1
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..+|+|++|..-|. .-..++.+.+++.-
T Consensus 54 ~~~dlvi~d~~~~~--------~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 54 SRPDLILLXLNLPK--------KDGREVLAEIKSDP 81 (140)
T ss_dssp CCCSEEEECSSCSS--------SCHHHHHHHHHHST
T ss_pred CCCcEEEEecCCCc--------ccHHHHHHHHHcCc
Confidence 68999999986551 22467888888753
No 344
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=57.10 E-value=9 Score=23.60 Aligned_cols=50 Identities=6% Similarity=-0.138 Sum_probs=28.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC-CCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR-PGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~-p~Gil~~ 69 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++.-. +.-.+++
T Consensus 35 ~~~~~~~a~~~l~~~~~dlii~d~~l~~--------~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 35 IAHNGFDAGIKLSTFEPAIMTLDLSMPK--------LDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp EESSHHHHHHHHHHTCCSEEEEESCBTT--------BCHHHHHHHHHTTTCSSCCEEEE
T ss_pred EeCCHHHHHHHHHhcCCCEEEEecCCCC--------CCHHHHHHHHHhcCccCCCeEEE
Confidence 3345555443322357999999987652 224677888776543 3334443
No 345
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=56.75 E-value=9.2 Score=24.40 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=29.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 47 ~~~~~~a~~~l~~~~~dlii~d~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 95 (152)
T 3eul_A 47 ADDGAAALELIKAHLPDVALLDYRMPG--------MDGAQVAAAVRSYELPTRVLLI 95 (152)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEETTCSS--------SCHHHHHHHHHHTTCSCEEEEE
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCeEEEE
Confidence 556555544322357999999987551 2246788888776332234443
No 346
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=55.63 E-value=27 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=27.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~ 71 (127)
T 2jba_A 31 EAEDYDSAVNQLNEPWPDLILLAWMLPG--------GSGIQFIKHLRRE 71 (127)
T ss_dssp EECSHHHHHTTCSSSCCSEEEEESEETT--------EEHHHHHHHHHTS
T ss_pred EeCCHHHHHHHHhccCCCEEEEecCCCC--------CCHHHHHHHHHhC
Confidence 4567777776644567999999986551 1235677777754
No 347
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=55.38 E-value=12 Score=23.13 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=28.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 33 ~~~~~~a~~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 33 ASDGEEALKKAETEKPDLIVLDVMLPK--------LDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESSCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred ecCHHHHHHHHhhcCCCEEEEecCCCC--------CCHHHHHHHHHcCCCCCCEEEE
Confidence 445555443322356999999987652 1235778888775333344444
No 348
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=54.26 E-value=17 Score=22.77 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=28.8
Q ss_pred EccHHHHhcCCC-C-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPV-K-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~-~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.+.... . ..+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 101 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD--------TAELAAIEKLSRLHPGLTCLLV 101 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC--------HHHHHHHHHHHHHCTTCEEEEE
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC--------ccHHHHHHHHHHhCCCCcEEEE
Confidence 445665555532 2 68999999986551 2245777777765433334443
No 349
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=54.21 E-value=13 Score=22.65 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=26.8
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIV 67 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil 67 (132)
..++.+.++.....++|+|++|..-|. .-..++.+.+++. .|+--+
T Consensus 33 ~~~~~~a~~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~-~~~~~i 78 (124)
T 1srr_A 33 AANGLQALDIVTKERPDLVLLDMKIPG--------MDGIEILKRMKVI-DENIRV 78 (124)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESCCTT--------CCHHHHHHHHHHH-CTTCEE
T ss_pred eCCHHHHHHHHhccCCCEEEEecCCCC--------CCHHHHHHHHHHh-CCCCCE
Confidence 445555443322356999999987551 1235778888765 344433
No 350
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=54.20 E-value=12 Score=27.66 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=29.4
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG 72 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~ 72 (132)
.+||+||++-... .-++.+..+.+++-.+.||-+++..+
T Consensus 49 ~~yDvIIl~d~~~--------~~l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 49 AKQDLVILSDYPA--------ERMTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp HTCSEEEEESCCG--------GGBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEcCCcc--------ccCCHHHHHHHHHHHHhCCeEEEecC
Confidence 3799999862211 24578999999999999999988754
No 351
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=53.91 E-value=13 Score=31.29 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=34.5
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc---CCCcEEEE
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL---RPGGIVCS 69 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L---~p~Gil~~ 69 (132)
.++++..+|+.+.......++||+||.+.+=. ......---.++|+.+.+.| .|||-+.+
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG---~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 283 ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG---ERLDSEPALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp GGEEEEECCGGGCCCSCTTCCCCEEEECCCCC---C---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CceEEEECChhhCccccccCCCCEEEeCCCcc---ccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 35789999998843221123899999997422 11111111256676655554 47887755
No 352
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=53.56 E-value=7.8 Score=28.60 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=19.8
Q ss_pred CCcEEEEccHHHHhcCCCCCeecEEEEcCC
Q psy4593 7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAA 36 (132)
Q Consensus 7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~ 36 (132)
++++++.+|+.++ . -..||+|+.++.
T Consensus 77 ~~v~~~~~D~~~~--~--~~~fD~vv~nlp 102 (285)
T 1zq9_A 77 SKLQVLVGDVLKT--D--LPFFDTCVANLP 102 (285)
T ss_dssp GGEEEEESCTTTS--C--CCCCSEEEEECC
T ss_pred CceEEEEcceecc--c--chhhcEEEEecC
Confidence 5799999998764 2 237999999764
No 353
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=52.82 E-value=10 Score=23.81 Aligned_cols=40 Identities=3% Similarity=-0.061 Sum_probs=23.8
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 40 ~~~~~~al~~l~~~~~dlvllD~~lp~--------~~g~~~~~~l~~~ 79 (140)
T 3c97_A 40 VTNGLQALQAYQNRQFDVIIMDIQMPV--------MDGLEAVSEIRNY 79 (140)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECTTCCS--------SCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCC--------CcHHHHHHHHHhh
Confidence 355555544322356999999987652 1235677777653
No 354
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=52.79 E-value=9.2 Score=24.33 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=23.6
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++
T Consensus 44 ~~~~~~al~~~~~~~~dlvl~D~~mp~--------~~g~~~~~~lr~ 82 (143)
T 3m6m_D 44 VNGAEQVLDAMAEEDYDAVIVDLHMPG--------MNGLDMLKQLRV 82 (143)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHH
T ss_pred eCCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHh
Confidence 345544443322357999999987662 224577777764
No 355
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=52.37 E-value=17 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=22.1
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEE
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCS 69 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~ 69 (132)
.+|+||+|..-|. .-..++.+.+++.-.++ -++++
T Consensus 52 ~~dlvi~D~~l~~--------~~g~~~~~~l~~~~~~~~~ii~~ 87 (136)
T 3hdv_A 52 RIGLMITDLRMQP--------ESGLDLIRTIRASERAALSIIVV 87 (136)
T ss_dssp TEEEEEECSCCSS--------SCHHHHHHHHHTSTTTTCEEEEE
T ss_pred CCcEEEEeccCCC--------CCHHHHHHHHHhcCCCCCCEEEE
Confidence 4999999987652 12467788887752333 34443
No 356
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=51.96 E-value=14 Score=22.26 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=28.9
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~ 69 (132)
...++.+.++.....++|+|++|..-|. .-..++.+.+++.- |+ -++++
T Consensus 32 ~~~~~~~a~~~~~~~~~dlil~D~~l~~--------~~g~~~~~~l~~~~-~~~~ii~~ 81 (120)
T 1tmy_A 32 EATNGREAVEKYKELKPDIVTMDITMPE--------MNGIDAIKEIMKID-PNAKIIVC 81 (120)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEECSCGG--------GCHHHHHHHHHHHC-TTCCEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCC--------CcHHHHHHHHHhhC-CCCeEEEE
Confidence 3556655554322356999999986551 22467788887653 43 34443
No 357
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.86 E-value=26 Score=21.85 Aligned_cols=49 Identities=4% Similarity=-0.203 Sum_probs=28.5
Q ss_pred EccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++... ...+|+||+|..-| .+ .-..++.+.+++. ..--++++
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~---~~----~~g~~~~~~l~~~-~~~~ii~l 84 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELG---EG----MDGVQTALAIQQI-SELPVVFL 84 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCS---SS----CCHHHHHHHHHHH-CCCCEEEE
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCC---CC----CCHHHHHHHHHhC-CCCCEEEE
Confidence 445555544322 36799999998654 11 2246788888775 33334444
No 358
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=51.36 E-value=15 Score=21.96 Aligned_cols=49 Identities=4% Similarity=-0.034 Sum_probs=28.5
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++......+|+|++|..-|. .-..++.+.+++. .+-.++++
T Consensus 30 ~~~~~~~a~~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~-~~~~ii~~ 78 (120)
T 2a9o_A 30 TAFNGREALEQFEAEQPDIIILDLMLPE--------IDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSSCSS--------SCHHHHHHHHHHH-CCCCEEEE
T ss_pred EecCHHHHHHHHHhCCCCEEEEeccCCC--------CCHHHHHHHHHhC-CCCCEEEE
Confidence 3445555543322357999999986551 1235777777763 44445554
No 359
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=51.30 E-value=14 Score=23.14 Aligned_cols=48 Identities=17% Similarity=0.006 Sum_probs=27.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~ 69 (132)
..++.+.++......+|+||+|..-|. .-..++.+.+++. .+.- ++++
T Consensus 41 ~~~~~~al~~l~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~-~~~~~ii~~ 89 (143)
T 2qv0_A 41 FDDGLDVLKFLQHNKVDAIFLDINIPS--------LDGVLLAQNISQF-AHKPFIVFI 89 (143)
T ss_dssp ESCHHHHHHHHHHCCCSEEEECSSCSS--------SCHHHHHHHHTTS-TTCCEEEEE
T ss_pred eCCHHHHHHHHHhCCCCEEEEecCCCC--------CCHHHHHHHHHcc-CCCceEEEE
Confidence 455555443322256999999986551 2245777777763 4444 3433
No 360
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=50.58 E-value=18 Score=22.93 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred EEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593 12 ARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 65 (132)
...++.+.++.... ..+|+||+|..-|. .-..++.+.+++. .|+-
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~--------~~g~~~~~~l~~~-~~~~ 79 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPD--------AEAIDGLVRLKRF-DPSN 79 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC--------------CHHHHHHHHHH-CTTS
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCC--------CchHHHHHHHHHh-CCCC
Confidence 34555555443223 67999999986551 1236778888776 3443
No 361
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=50.41 E-value=19 Score=24.72 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=29.7
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 36 ~~~~~~~a~~~~~~~~~dlvllD~~l~~--------~~g~~~~~~l~~~~~~~~ii~l 85 (233)
T 1ys7_A 36 TAVDGAEALRSATENRPDAIVLDINMPV--------LDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESSCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 3445555544322357999999987662 1245778888765433345544
No 362
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=49.25 E-value=37 Score=20.47 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=22.7
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
.|+.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 38 ~~~~~a~~~~~~~~~dlvl~D~~l~~--------~~g~~~~~~l~~~ 76 (129)
T 1p6q_A 38 GDGEQGMKIMAQNPHHLVISDFNMPK--------MDGLGLLQAVRAN 76 (129)
T ss_dssp SSHHHHHHHHHTSCCSEEEECSSSCS--------SCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCEEEEeCCCCC--------CCHHHHHHHHhcC
Confidence 34444433222357999999987652 1235677777654
No 363
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=49.24 E-value=20 Score=24.34 Aligned_cols=50 Identities=10% Similarity=-0.079 Sum_probs=28.3
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvllD~~l~~--------~~g~~~~~~lr~~~~~~~ii~l 80 (225)
T 1kgs_A 31 VCYDGEEGMYMALNEPFDVVILDIMLPV--------HDGWEILKSMRESGVNTPVLML 80 (225)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred EECCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 3455555544322357999999987662 1235667777665333334443
No 364
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=48.87 E-value=16 Score=25.74 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=28.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++.-..--++++
T Consensus 53 ~~~~~~al~~~~~~~~dlvllD~~lp~--------~~g~~~~~~lr~~~~~~~ii~l 101 (250)
T 3r0j_A 53 ATNGAQALDRARETRPDAVILDVXMPG--------MDGFGVLRRLRADGIDAPALFL 101 (250)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESCCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 445555554322357999999987662 1235667777665332334443
No 365
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=48.85 E-value=19 Score=22.41 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=19.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..+|+||+|..-|. .-..++.+.+++.-
T Consensus 61 ~~~dlvi~D~~l~~--------~~g~~~~~~l~~~~ 88 (149)
T 1k66_A 61 PRPAVILLDLNLPG--------TDGREVLQEIKQDE 88 (149)
T ss_dssp CCCSEEEECSCCSS--------SCHHHHHHHHTTST
T ss_pred CCCcEEEEECCCCC--------CCHHHHHHHHHhCc
Confidence 68999999987551 22357777777643
No 366
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=48.82 E-value=11 Score=23.53 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=24.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+||+|..-|. .-..++.+.+++.
T Consensus 33 ~~~~~~al~~l~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 33 AFSGEECLEALNATPPDLVLLDIMMEP--------MDGWETLERIKTD 72 (138)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHHS
T ss_pred eCCHHHHHHHHhccCCCEEEEeCCCCC--------CCHHHHHHHHHcC
Confidence 445555443322356999999987652 1245778887764
No 367
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=48.51 E-value=57 Score=23.45 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=33.1
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEe
Q psy4593 63 PGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLG 115 (132)
Q Consensus 63 p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~a 115 (132)
.++++++.+..|......+..+++.+.+ ..+. ..|++.||.|.+.+.
T Consensus 103 ~~~vliigaD~P~L~~~~l~~a~~~l~~--~d~V----igPa~dGG~~llg~~ 149 (242)
T 3cgx_A 103 YDRVVLMGSDIPDYPCELVQKALNDLQH--YDAA----IGPAFDGGYYLIGFR 149 (242)
T ss_dssp CSEEEEECSSCTTCCHHHHHHHHHHTTT--CSEE----EEEBTTSSEEEEEEE
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHhcc--CCeE----EEEcCCCCEEEEecc
Confidence 3579999999999888888887776654 2222 378888876654443
No 368
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=48.32 E-value=53 Score=22.16 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=31.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++. . ..+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 30 ~~~~~~~al~~-~-~~~dlvllD~~lp~--------~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 30 TFLTGEDFLND-E-EAFHVVVLDVMLPD--------YSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EESSHHHHHHC-C-SCCSEEEEESBCSS--------SBHHHHHHHHHHHCTTSEEEEE
T ss_pred EECCHHHHHHh-c-CCCCEEEEeCCCCC--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 45678888877 4 78999999987652 2245777777765433334443
No 369
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=48.17 E-value=23 Score=21.79 Aligned_cols=49 Identities=4% Similarity=-0.184 Sum_probs=28.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.++......+|+||+|..-| .+ .-..++.+.+++. ..--++++
T Consensus 40 ~~~~~~a~~~~~~~~~dlii~d~~~~---~~----~~g~~~~~~l~~~-~~~~ii~l 88 (140)
T 3cg0_A 40 FDNGEEAVRCAPDLRPDIALVDIMLC---GA----LDGVETAARLAAG-CNLPIIFI 88 (140)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESSCC---SS----SCHHHHHHHHHHH-SCCCEEEE
T ss_pred ECCHHHHHHHHHhCCCCEEEEecCCC---CC----CCHHHHHHHHHhC-CCCCEEEE
Confidence 45555544332235699999997644 11 2246788888877 33344444
No 370
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=47.79 E-value=11 Score=23.70 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=28.5
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++......+|+|++|..-|. .-..++.+.+++.- .-.++++
T Consensus 33 ~~~~~~~al~~~~~~~~dlvllD~~l~~--------~~g~~l~~~l~~~~-~~~ii~l 81 (136)
T 2qzj_A 33 LAYNCEEAIGKIFSNKYDLIFLEIILSD--------GDGWTLCKKIRNVT-TCPIVYM 81 (136)
T ss_dssp EESSHHHHHHHHHHCCCSEEEEESEETT--------EEHHHHHHHHHTTC-CCCEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCC--------CCHHHHHHHHccCC-CCCEEEE
Confidence 3455555544322357999999986551 12356777777643 3345544
No 371
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=47.33 E-value=12 Score=23.65 Aligned_cols=53 Identities=6% Similarity=-0.015 Sum_probs=30.8
Q ss_pred CcEE--EEccHHHHhcCCCCC-eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 8 PVLS--ARQDCTDFMSGPVKN-MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 8 rv~v--~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++ ...|+.+.++..... .+|+||+|..-|. . -..++.+.+++.- +..++++
T Consensus 38 ~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~--~------~g~~~~~~lr~~~-~~~iiil 93 (145)
T 3kyj_B 38 DFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPV--M------DGMEFLRHAKLKT-RAKICML 93 (145)
T ss_dssp TEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCC--C------TTCHHHHHHHHHC-CCEEC-C
T ss_pred CceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCC--C------CHHHHHHHHHhcC-CCCeEEE
Confidence 4553 456666655432223 7999999987662 1 1346777777653 4445544
No 372
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=47.18 E-value=16 Score=24.84 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=31.4
Q ss_pred cEE--EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 9 VLS--ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 9 v~v--~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+++ ...|+.+.++......+|+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 31 ~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~--------~~g~~~~~~lr~~~~~~~ii~l 85 (215)
T 1a04_A 31 ITVVGEASNGEQGIELAESLDPDLILLDLNMPG--------MNGLETLDKLREKSLSGRIVVF 85 (215)
T ss_dssp EEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT--------SCHHHHHHHHHHSCCCSEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC--------CcHHHHHHHHHHhCCCCcEEEE
Confidence 454 3566666654422356999999987662 1245777887765333334443
No 373
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=46.18 E-value=27 Score=21.62 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=19.4
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..+|+||+|..-|. .-..++.+.+++.-
T Consensus 58 ~~~dlii~D~~l~~--------~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 58 IHPKLILLDINIPK--------MNGIEFLKELRDDS 85 (143)
T ss_dssp CCCSEEEEETTCTT--------SCHHHHHHHHTTSG
T ss_pred CCCCEEEEecCCCC--------CCHHHHHHHHHcCc
Confidence 67999999986551 12357777777653
No 374
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=45.21 E-value=18 Score=23.53 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=29.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++.- +--++++
T Consensus 57 ~~~~~~al~~l~~~~~dlvilD~~l~~--------~~g~~l~~~lr~~~-~~~ii~~ 104 (164)
T 3t8y_A 57 AKDGLEAVEKAIELKPDVITMDIEMPN--------LNGIEALKLIMKKA-PTRVIMV 104 (164)
T ss_dssp ESSHHHHHHHHHHHCCSEEEECSSCSS--------SCHHHHHHHHHHHS-CCEEEEE
T ss_pred cCCHHHHHHHhccCCCCEEEEeCCCCC--------CCHHHHHHHHHhcC-CceEEEE
Confidence 556665554422357999999987551 22467777777644 3445544
No 375
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.68 E-value=7.8 Score=28.61 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=22.8
Q ss_pred CcEEE--EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..+++ ..||.+.++.....+||+|++|..-|
T Consensus 184 g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MP 216 (286)
T 3n0r_A 184 GHDVTDIAATRGEALEAVTRRTPGLVLADIQLA 216 (286)
T ss_dssp TCEEEEEESSHHHHHHHHHHCCCSEEEEESCCT
T ss_pred CceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCC
Confidence 34454 67888877664446799999999877
No 376
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=43.61 E-value=15 Score=22.05 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=28.6
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~ 69 (132)
..++.+.++......+|+|++|..-| ...-..++.+.+++. ...--++++
T Consensus 35 ~~~~~~a~~~~~~~~~dlvi~d~~~~-------~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 35 TTDGKGSVEQIRRDRPDLVVLAVDLS-------AGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp ECCHHHHHHHHHHHCCSEEEEESBCG-------GGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ecCHHHHHHHHHhcCCCEEEEeCCCC-------CCCCHHHHHHHHhcCccccCCCEEEE
Confidence 34444444332234699999997543 012246788888876 344446665
No 377
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.35 E-value=20 Score=21.02 Aligned_cols=41 Identities=5% Similarity=-0.139 Sum_probs=24.1
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..++.+.++......+|+|++|..-+. .-..++.+.+++.-
T Consensus 31 ~~~~~~~~~~l~~~~~dlii~d~~~~~--------~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 31 LVDGSTALDQLDLLQPIVILMAWPPPD--------QSCLLLLQHLREHQ 71 (119)
T ss_dssp ESCHHHHHHHHHHHCCSEEEEECSTTC--------CTHHHHHHHHHHTC
T ss_pred ecCHHHHHHHHHhcCCCEEEEecCCCC--------CCHHHHHHHHHhcc
Confidence 344444433322247999999986541 22357788887764
No 378
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=43.31 E-value=11 Score=23.47 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=21.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..++.+.++......+|+||+|..-|. . -..++.+.+++.-
T Consensus 32 ~~~~~~a~~~~~~~~~dlvi~D~~l~~--~------~g~~~~~~l~~~~ 72 (140)
T 3n53_A 32 SKNEKEALEQIDHHHPDLVILDMDIIG--E------NSPNLCLKLKRSK 72 (140)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEETTC--------------CHHHHHHTST
T ss_pred eCCHHHHHHHHhcCCCCEEEEeCCCCC--C------cHHHHHHHHHcCc
Confidence 345555443322357999999987552 1 1245566666544
No 379
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=43.24 E-value=6.2 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=28.7
Q ss_pred CeecEEEEcCCCCCCCCC--CC-----cccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 26 NMCGLVVSGAAGPGRVVC--PA-----ESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~--~~-----~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
+.||+||++=.+. .. .+ ..-.+.+.++.+++-.+.||-+++-.+.
T Consensus 69 ~~yDvIIl~d~~~---~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~gG~ 120 (248)
T 3soz_A 69 ACYDAIVISDIGS---NTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMIGGY 120 (248)
T ss_dssp HTCSEEEEESCCH---HHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEECST
T ss_pred hcCCEEEEcCCCc---chhccCccccccccCCHHHHHHHHHHHHhCCEEEEEcCc
Confidence 5799999882221 01 00 0111556689999999999999886543
No 380
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=42.29 E-value=34 Score=21.58 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=19.3
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
.++|+|++|..-|. .-..++.+.+++.
T Consensus 60 ~~~dlillD~~lp~--------~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 60 PRPNLILLDLNLPK--------KDGREVLAEIKQN 86 (149)
T ss_dssp CCCSEEEECSCCSS--------SCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCC--------CcHHHHHHHHHhC
Confidence 47999999987662 1245778888764
No 381
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=42.00 E-value=18 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=27.1
Q ss_pred ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 14 ~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.||.+.++......||+|++|..-|. .-..++.+.+++.-..--++++
T Consensus 160 ~~~~eal~~l~~~~~dlvl~D~~mp~--------~~G~~l~~~ir~~~~~~piI~l 207 (254)
T 2ayx_A 160 NDGVDALNVLSKNHIDIVLSDVNMPN--------MDGYRLTQRIRQLGLTLPVIGV 207 (254)
T ss_dssp CCSHHHHHHHHHSCCSEEEEEESSCS--------SCCHHHHHHHHHHHCCSCEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCCCC--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 34444433222356999999987662 2235777777765433345554
No 382
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=41.70 E-value=22 Score=23.94 Aligned_cols=49 Identities=14% Similarity=-0.010 Sum_probs=29.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...++.+.++......+|+||+|..-|. .-..++.+.+++. .+.-++++
T Consensus 43 ~~~~~~~al~~~~~~~~dlvi~D~~~p~--------~~g~~~~~~l~~~-~~~pii~l 91 (205)
T 1s8n_A 43 EAGDGQEAVELAELHKPDLVIMDVKMPR--------RDGIDAASEIASK-RIAPIVVL 91 (205)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESSCSS--------SCHHHHHHHHHHT-TCSCEEEE
T ss_pred EeCCHHHHHHHHhhcCCCEEEEeCCCCC--------CChHHHHHHHHhc-CCCCEEEE
Confidence 3566666554422356999999987662 2235777777764 34456554
No 383
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=39.99 E-value=55 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=25.6
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+||+||.+... ..++.+..+.+.+.++.||-++.-
T Consensus 57 ~~~D~vV~~~~~---------~~l~~~~~~~l~~yV~~Ggglv~~ 92 (281)
T 4e5v_A 57 SPYQLVVLDYNG---------DSWPEETNRRFLEYVQNGGGVVIY 92 (281)
T ss_dssp TTCSEEEECCCS---------SCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred hcCCEEEEeCCC---------CcCCHHHHHHHHHHHHcCCCEEEE
Confidence 579999976532 134678888888888877776653
No 384
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=39.39 E-value=43 Score=23.56 Aligned_cols=39 Identities=5% Similarity=0.052 Sum_probs=23.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..|+.+.++......+|+||+|..-|. .-..++.+.+++
T Consensus 67 ~~~~~~al~~~~~~~~DlvllD~~lp~--------~~G~~l~~~lr~ 105 (249)
T 3q9s_A 67 ADSAMNGLIKAREDHPDLILLDLGLPD--------FDGGDVVQRLRK 105 (249)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEECCSCH--------HHHHHHHHHHHT
T ss_pred eCCHHHHHHHHhcCCCCEEEEcCCCCC--------CCHHHHHHHHHc
Confidence 345555544322357999999987651 223566666665
No 385
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=39.19 E-value=26 Score=23.94 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=28.8
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...|+.+.++......+|+|++|..-|. .-..++.+.+++. ..--++++
T Consensus 33 ~~~~~~~al~~~~~~~~dlvllD~~l~~--------~~g~~~~~~l~~~-~~~~ii~l 81 (230)
T 2oqr_A 33 VVTDGPAALAEFDRAGADIVLLDLMLPG--------MSGTDVCKQLRAR-SSVPVIMV 81 (230)
T ss_dssp EECSHHHHHHHHHHHCCSEEEEESSCSS--------SCHHHHHHHHHHH-CSCSEEEE
T ss_pred EECCHHHHHHHHhccCCCEEEEECCCCC--------CCHHHHHHHHHcC-CCCCEEEE
Confidence 3455555554322356999999987652 1245778887774 33344443
No 386
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=38.08 E-value=39 Score=24.23 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=35.4
Q ss_pred ecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcE-----EEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 28 CGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGI-----VCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 28 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi-----l~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
-+||++|. .|.|-.-...+.+.|+..|. .++.. .-. ..-++.+.+.||+|.+|.+.+
T Consensus 130 ~~VilvD~-----------~laTG~T~~~ai~~L~~~G~pe~~I~~~~~---vaa----~egl~~l~~~~P~v~i~ta~i 191 (217)
T 3dmp_A 130 RIFILCDP-----------MVATGYSAAHAIDVLKRRGVPGERLMFLAL---VAA----PEGVQVFQDAHPDVKLYVASL 191 (217)
T ss_dssp CEEEEECS-----------EESSSHHHHHHHHHHHTTTCCGGGEEEECS---EEC----HHHHHHHHHHCTTCEEEESEE
T ss_pred CEEEEEcC-----------cccccHHHHHHHHHHHHcCCCcCeEEEEEE---EeC----HHHHHHHHHHCCCCEEEEEEe
Confidence 36777773 23344446666677777775 33321 111 345678999999999887654
No 387
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=38.00 E-value=24 Score=24.08 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=19.9
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..||+||+|..-|. .-..++.+.+++.
T Consensus 118 ~~~dlillD~~lp~--------~~G~el~~~lr~~ 144 (206)
T 3mm4_A 118 LPFDYIFMDCQMPE--------MDGYEATREIRKV 144 (206)
T ss_dssp CSCSEEEEESCCSS--------SCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCC--------CCHHHHHHHHHhh
Confidence 37999999987662 2346888888875
No 388
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=37.84 E-value=53 Score=22.38 Aligned_cols=55 Identities=9% Similarity=-0.060 Sum_probs=31.7
Q ss_pred CCcEEEE--ccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEE
Q psy4593 7 YPVLSAR--QDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCS 69 (132)
Q Consensus 7 ~rv~v~~--~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~ 69 (132)
+.++++. .++.+-+.. .....+|+|++|..-|. .-..++.+.+++...|+ -++++
T Consensus 31 ~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~--------~~G~~~~~~lr~~~~~~~~ii~l 89 (225)
T 3klo_A 31 LPLALEITPFSELWLEENKPESRSIQMLVIDYSRIS--------DDVLTDYSSFKHISCPDAKEVII 89 (225)
T ss_dssp SSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCC--------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCC--------CCHHHHHHHHHHhhCCCCcEEEE
Confidence 3455543 556554543 24568999999987662 22466777777633344 34443
No 389
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=37.80 E-value=58 Score=19.76 Aligned_cols=41 Identities=2% Similarity=-0.018 Sum_probs=24.6
Q ss_pred EEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 12 ARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 12 ~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
...++.+.++.. ....+|+|++|..-|. .-..++.+.+++.
T Consensus 35 ~~~~~~~a~~~~~~~~~~dlvi~D~~~p~--------~~g~~~~~~lr~~ 76 (129)
T 3h1g_A 35 EAEHGVEAWEKLDANADTKVLITDWNMPE--------MNGLDLVKKVRSD 76 (129)
T ss_dssp EESSHHHHHHHHHHCTTCCEEEECSCCSS--------SCHHHHHHHHHTS
T ss_pred EeCCHHHHHHHHHhCCCCCEEEEeCCCCC--------CCHHHHHHHHHhc
Confidence 445555544321 1346999999987662 1246777777763
No 390
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=36.95 E-value=16 Score=22.10 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=24.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..++.+.++......+|+|++|..-|. .-..++.+.+++.
T Consensus 31 ~~~~~~a~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 31 TREGLSALSIARENKPDLILMDIQLPE--------ISGLEVTKWLKED 70 (124)
T ss_dssp ESCHHHHHHHHHHHCCSEEEEESBCSS--------SBHHHHHHHHHHS
T ss_pred eCCHHHHHHHHhcCCCCEEEEeCCCCC--------CCHHHHHHHHHcC
Confidence 455555543322356999999986552 1235777777764
No 391
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=36.74 E-value=29 Score=26.24 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=24.4
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~ 60 (132)
..||.+-++.....++|+||+|..-|. .-..++.+.+++.
T Consensus 35 a~~~~~al~~~~~~~~dlvllD~~mp~--------~~G~~~~~~lr~~ 74 (394)
T 3eq2_A 35 ALNGLQGLQIFESEQPDLVICDLRMPQ--------IDGLELIRRIRQT 74 (394)
T ss_dssp CSSHHHHHHHHHHSCCSEEEECCCSSS--------SCTHHHHHHHHHT
T ss_pred ECCHHHHHHHHhhCCCCEEEEcCCCCC--------CCHHHHHHHHHhh
Confidence 345655554423357999999987662 1234566666654
No 392
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=36.35 E-value=28 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy4593 51 ASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~ 69 (132)
.+++..+.+.|+|||.+++
T Consensus 213 ~~~L~~a~~~L~~gGrl~v 231 (285)
T 1wg8_A 213 KEFLEQAAEVLAPGGRLVV 231 (285)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 4567888999999999987
No 393
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=35.19 E-value=40 Score=27.28 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=43.4
Q ss_pred cEEEEccHHHHh--cCCCCCeecEEEEcCCCC-CC--------CCCCCcccccHHHHHHHHHhcC-------CCcEEEE-
Q psy4593 9 VLSARQDCTDFM--SGPVKNMCGLVVSGAAGP-GR--------VVCPAESLFQASYFELMSRALR-------PGGIVCS- 69 (132)
Q Consensus 9 v~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp-~~--------~~~~~~~L~t~eF~~~~~~~L~-------p~Gil~~- 69 (132)
-+|..+|...+- ......+||+|+...+=. .+ ...+...-...-|++.+.+.|+ |||.+++
T Consensus 282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 467788876531 111235899999986411 00 0011112223458888888887 6898764
Q ss_pred -ecCCCCCChHHHHHHHHHHHhhC
Q psy4593 70 -QAGTLWYSLDCVGNTLQHCASVF 92 (132)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~l~~vF 92 (132)
..+..+ .......+.+.|.+.+
T Consensus 362 lP~g~Lf-~~~~~~~iRk~Lle~~ 384 (530)
T 3ufb_A 362 VPNGTLF-SDGISARIKEELLKNF 384 (530)
T ss_dssp EEHHHHH-CCTHHHHHHHHHHHHS
T ss_pred ecchhhh-ccchHHHHHHHHhhcC
Confidence 221122 2222344556665554
No 394
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=34.50 E-value=31 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+++..+.+.|+|||.+++=
T Consensus 254 ~~~L~~a~~~L~~gGRl~VI 273 (347)
T 3tka_A 254 EQALKSSLNVLAPGGRLSII 273 (347)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEE
Confidence 45678899999999999973
No 395
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=34.14 E-value=39 Score=25.27 Aligned_cols=29 Identities=3% Similarity=-0.154 Sum_probs=18.6
Q ss_pred CCcEEEEccHHHH---hcCCCCCeecEEEEcC
Q psy4593 7 YPVLSARQDCTDF---MSGPVKNMCGLVVSGA 35 (132)
Q Consensus 7 ~rv~v~~~Dg~~~---l~~~~~~~yDvIi~D~ 35 (132)
+|++++.+|..+. +......+||.|+.|+
T Consensus 75 ~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 75 DRVSLFKVSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp TTEEEEECCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CcEEEEECCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 5788888886553 2221114788888875
No 396
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=33.67 E-value=16 Score=21.89 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=15.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGP 38 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp 38 (132)
..++.+.++......+|+|++|..-|
T Consensus 33 ~~~~~~~~~~~~~~~~dlvi~d~~~~ 58 (124)
T 1dc7_A 33 FENGNEVLAALASKTPDVLLSDIRMP 58 (124)
T ss_dssp CCCTTHHHHHSSSCCCSCEEECSCSS
T ss_pred eCCHHHHHHHHhcCCCCEEEEeeecC
Confidence 34444444332335689999998655
No 397
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=32.12 E-value=39 Score=24.08 Aligned_cols=42 Identities=5% Similarity=-0.107 Sum_probs=26.1
Q ss_pred EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
.+...++.+-+.......||+|++|..-|. .. ..++.+.+++
T Consensus 31 ~v~~~~~~~~~~~~~~~~~dlvllD~~mP~--~~------G~~~~~~lr~ 72 (259)
T 3luf_A 31 EIDAFDTLEGARHCQGDEYVVALVDLTLPD--AP------SGEAVKVLLE 72 (259)
T ss_dssp EEEEESSTGGGTTCCTTTEEEEEEESCBTT--BT------TSHHHHHHHH
T ss_pred EEEEeChHHHHHHhhcCCCcEEEEeCCCCC--CC------HHHHHHHHHh
Confidence 445556665555434568999999998773 21 2355666665
No 398
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=31.98 E-value=27 Score=24.10 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.1
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEE
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVC 68 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~ 68 (132)
...+|++|+|=.+| . +..+.+|.+.+.+.|+.. ++++
T Consensus 103 ~~~~dvlilDE~g~---~----~~~~~~~~~~l~~~l~~~~~~il 140 (189)
T 2i3b_A 103 GPGQRVCVIDEIGK---M----ELFSQLFIQAVRQTLSTPGTIIL 140 (189)
T ss_dssp SSCCCCEEECCCST---T----TTTCSHHHHHHHHHHHCSSCCEE
T ss_pred ccCCCEEEEeCCCc---c----ccccHHHHHHHHHHHhCCCcEEE
Confidence 46799999997555 2 334667999999999755 6663
No 399
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=31.73 E-value=27 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=22.5
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHH---HHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASY---FELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF---~~~~~~~L~p~Gil~~ 69 (132)
+.||+||+|..-. ... -..... ++.+.+.+.+++++.+
T Consensus 179 ~~~D~ViIDTpg~---~~~---~~~~~l~~el~~i~~~~~~d~vllV 219 (297)
T 1j8m_F 179 EKMEIIIVDTAGR---HGY---GEEAALLEEMKNIYEAIKPDEVTLV 219 (297)
T ss_dssp TTCSEEEEECCCS---CCT---TCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEeCCCC---ccc---ccHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5799999998421 110 011122 3345677889998765
No 400
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=31.51 E-value=36 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=32.2
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE-ecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS-QAGTLWYSLDCVGNTLQHCASVFPR 94 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~-~~~~~~~~~~~~~~~~~~l~~vF~~ 94 (132)
+.||+||+|..-- ......+ .+-++.+.+..+|+.++.+ .+.. ... .....+.+.+..+-
T Consensus 181 ~~~DvVIIDTaGr---l~~d~~l--m~el~~i~~~~~pd~vlLVvDA~~---gq~-a~~~a~~f~~~~~i 241 (443)
T 3dm5_A 181 KGVDIIIVDTAGR---HKEDKAL--IEEMKQISNVIHPHEVILVIDGTI---GQQ-AYNQALAFKEATPI 241 (443)
T ss_dssp TTCSEEEEECCCC---SSCCHHH--HHHHHHHHHHHCCSEEEEEEEGGG---GGG-HHHHHHHHHHSCTT
T ss_pred CCCCEEEEECCCc---ccchHHH--HHHHHHHHHhhcCceEEEEEeCCC---chh-HHHHHHHHHhhCCC
Confidence 3599999997522 1112122 1225566778889887654 3321 111 23444666655553
No 401
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=31.05 E-value=17 Score=25.18 Aligned_cols=47 Identities=9% Similarity=-0.100 Sum_probs=29.3
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
..|+.+.++......+|+|++|..-|. .-..++.+.+++. .|+--++
T Consensus 33 ~~~~~~al~~l~~~~~dlvllD~~lp~--------~~g~~~~~~lr~~-~~~~~ii 79 (225)
T 3c3w_A 33 AGSVAEAMARVPAARPDVAVLDVRLPD--------GNGIELCRDLLSR-MPDLRCL 79 (225)
T ss_dssp ESSHHHHHHHHHHHCCSEEEECSEETT--------EEHHHHHHHHHHH-CTTCEEE
T ss_pred ECCHHHHHHHHhhcCCCEEEEeCCCCC--------CCHHHHHHHHHHh-CCCCcEE
Confidence 566666654422356999999986551 2246778888776 4444333
No 402
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=30.17 E-value=40 Score=19.25 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhCCCce
Q psy4593 79 DCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 79 ~~~~~~~~~l~~vF~~v~ 96 (132)
+.+..+++.+++.||++.
T Consensus 15 sql~~Mve~V~~mFPqv~ 32 (58)
T 4g3o_A 15 GQLNAMAHQIQEMFPQVP 32 (58)
T ss_dssp HHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 357889999999999875
No 403
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=30.00 E-value=62 Score=26.78 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.5
Q ss_pred CeecEEEEcCCCCCC-CCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 26 NMCGLVVSGAAGPGR-VVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~-~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
...|++|+|++-... +..++..-...+|.+.+++.++.+|.+++.+
T Consensus 384 ~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~~g~vlIp~ 430 (651)
T 3af5_A 384 PRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPA 430 (651)
T ss_dssp SSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 478999999885410 0133444456789999999999999998875
No 404
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=29.70 E-value=51 Score=22.32 Aligned_cols=43 Identities=7% Similarity=-0.045 Sum_probs=25.1
Q ss_pred HHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 16 CTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 16 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
+.+.+++ ..+|+|++|..-|. . -..++.+.+++.-..-.+.++
T Consensus 17 a~~~~~~---~~~dlvl~D~~~p~----~----~g~~~~~~l~~~~~~~~i~vi 59 (237)
T 3cwo_X 17 AVEKYKE---LKPDIVTMDITMPE----M----NGIDAIKEIMKIDPNAKIIVC 59 (237)
T ss_dssp THHHHHH---HCCSCEEEECCSTT----S----SHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHh---cCCCEEEEeCCCCC----C----CHHHHHHHHHHhCCCCCEEEE
Confidence 4444444 46999999987662 1 125677777665433334443
No 405
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=29.22 E-value=56 Score=24.67 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+.++.+.+.|+++|.++.-
T Consensus 264 ~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 264 AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 45688999999999999874
No 406
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=29.19 E-value=65 Score=20.02 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEE
Q psy4593 54 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGAT 100 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~ 100 (132)
...+.+.++++.++..... +....+.+..++..+.+.||..++-..
T Consensus 25 ~~~l~~l~a~D~~~~dP~~-~~~G~~ai~~~~~~~~~~~~~~~f~~~ 70 (121)
T 3dxo_A 25 RHLVGQAWAENTRYVDPLM-QGEGQQGIAAMIEAARQKFPGYRFVLA 70 (121)
T ss_dssp HHHHHHHEEEEEEEECSSC-EEEHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHhcCCCeEEECCCC-CcCCHHHHHHHHHHHHHHCCCcEEEEc
Confidence 4568889999999986543 244566788899999999998776443
No 407
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=28.66 E-value=29 Score=20.62 Aligned_cols=48 Identities=4% Similarity=-0.026 Sum_probs=26.7
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..++.+.+.......+|+|++|..-|. .-..++.+.+++ ...-.++++
T Consensus 31 ~~~~~~~~~~~~~~~~dlvi~D~~l~~--------~~g~~~~~~l~~-~~~~~ii~~ 78 (121)
T 1zh2_A 31 AETLQRGLLEAATRKPDLIILDLGLPD--------GDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESEETT--------EEHHHHHHHHHT-TCCCCEEEE
T ss_pred eCCHHHHHHHHhcCCCCEEEEeCCCCC--------CcHHHHHHHHHh-CCCCcEEEE
Confidence 445555443322356999999986551 123567777773 333344444
No 408
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=28.64 E-value=86 Score=23.67 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=42.9
Q ss_pred ccccHHH-HHHHHHhcCCCcEEEEe--cCCCCCChHHHHHHHHHHHhhCCCceEeEEe
Q psy4593 47 SLFQASY-FELMSRALRPGGIVCSQ--AGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101 (132)
Q Consensus 47 ~L~t~eF-~~~~~~~L~p~Gil~~~--~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~ 101 (132)
+-|+.++ =+.|+++...++-+++- .++..+..+-+..+++-.+..|..|.+....
T Consensus 62 ~~F~v~plT~~C~~I~~r~~HaliGISPfNSyFS~dri~~Li~Wa~~~F~~VdVl~~d 119 (289)
T 2x9q_A 62 EGFLVRPFTQQCQIIHTEGDHAVIGVSPGNSYFSRQRLRDLGLWGLTNFDRVDFVYTD 119 (289)
T ss_dssp TTEEEEESSHHHHHHHHHTCEEEEEECTTCTTSCHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred cCceeccchhhHHHHHhcCCeEEEEECCCCCccCHHHHHHHHHHHHhcCCeeEEEecC
Confidence 3343333 37799999999998875 3666778889999999999999999886543
No 409
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=28.46 E-value=87 Score=23.24 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCcEEEEe--cCCCCCChHHHHHHHHHHHhhCCCceEeEEe
Q psy4593 54 FELMSRALRPGGIVCSQ--AGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~--~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~ 101 (132)
=+.|+.+...|.-+++- .+++....+-+.++++-+.+.|.+|.+....
T Consensus 19 t~~C~~I~~~g~HallGISpgNsyFs~d~L~~Li~Wa~~~F~~vdVli~D 68 (257)
T 3oqi_A 19 TQNCNEILKRRRHVLVGISPFNSRFSEDYIHRLIAWAVREFQSVSVLLAG 68 (257)
T ss_dssp SHHHHHHHHHTCEEEEEECTTSTTCCHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred chhHHHHHhCCCeEEEEeCCCCcccCHHHHHHHHHHHHccCCceEEEeCC
Confidence 36799999999888765 4677778888999999999999999886544
No 410
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=28.34 E-value=69 Score=21.99 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=22.1
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
..+|+|++|..-|. .-..++.+.+++.- .--++++
T Consensus 48 ~~~dlvilD~~l~~--------~~g~~~~~~lr~~~-~~~ii~l 82 (238)
T 2gwr_A 48 LRPDLVLLDLMLPG--------MNGIDVCRVLRADS-GVPIVML 82 (238)
T ss_dssp HCCSEEEEESSCSS--------SCHHHHHHHHHTTC-CCCEEEE
T ss_pred CCCCEEEEeCCCCC--------CCHHHHHHHHHhCC-CCcEEEE
Confidence 46999999987662 12356777777643 3345544
No 411
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.21 E-value=64 Score=25.56 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=34.0
Q ss_pred CeecEEEEcCCCCCCCCC--CCcccccHHHHHHHHHhcCCCcEEEE-ecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 26 NMCGLVVSGAAGPGRVVC--PAESLFQASYFELMSRALRPGGIVCS-QAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~--~~~~L~t~eF~~~~~~~L~p~Gil~~-~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
+.||+||+|...- .. ....+ .+-+..+.+.++|++++.+ .+.. . .....+.+.+++..+-..+
T Consensus 178 ~~~DvvIIDTaGr---~~~~~d~~l--m~el~~i~~~~~pd~vlLVlDa~~---g-q~a~~~a~~f~~~~~~~gV 243 (433)
T 3kl4_A 178 NKMDIIIVDTAGR---HGYGEETKL--LEEMKEMYDVLKPDDVILVIDASI---G-QKAYDLASRFHQASPIGSV 243 (433)
T ss_dssp TTCSEEEEEECCC---SSSCCTTHH--HHHHHHHHHHHCCSEEEEEEEGGG---G-GGGHHHHHHHHHHCSSEEE
T ss_pred cCCCEEEEECCCC---ccccCCHHH--HHHHHHHHHhhCCcceEEEEeCcc---c-hHHHHHHHHHhcccCCcEE
Confidence 5799999997532 11 12222 1334456678899998754 3321 1 1133455666655543333
No 412
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=28.17 E-value=72 Score=24.90 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=26.0
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC 68 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~ 68 (132)
...|+||.=+..| ......|++.+.++. ++||++++
T Consensus 264 ~~aDIVI~tv~iP---g~~ap~Lvt~emv~~----MkpGsVIV 299 (381)
T 3p2y_A 264 TKFDIVITTALVP---GRPAPRLVTAAAATG----MQPGSVVV 299 (381)
T ss_dssp TTCSEEEECCCCT---TSCCCCCBCHHHHHT----SCTTCEEE
T ss_pred hcCCEEEECCCCC---CcccceeecHHHHhc----CCCCcEEE
Confidence 5689999766556 345567888766665 78888876
No 413
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=27.99 E-value=52 Score=25.08 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=29.8
Q ss_pred EEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 12 ARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
...||.+.++.... ..+|+|++|..-|. .-..++.+.+++. .+.-.+++
T Consensus 33 ~a~~g~eal~~l~~~~~~DlvllDi~mP~--------~dG~ell~~l~~~-~~~~~ii~ 82 (400)
T 3sy8_A 33 EAADGKEAVAILESCGHVDIAICDLQMSG--------MDGLAFLRHASLS-GKVHSVIL 82 (400)
T ss_dssp EESSHHHHHHHHHHHSCEEEEEECSSCSS--------SCHHHHHHHHHHH-TCEEEEEE
T ss_pred EecCHHHHHHHHhhCCCCCEEEEeCCCCC--------CCHHHHHHHHHhc-CCCceEEE
Confidence 45677776654223 47999999998772 2235667776654 34444443
No 414
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.79 E-value=53 Score=25.14 Aligned_cols=41 Identities=5% Similarity=-0.026 Sum_probs=25.5
Q ss_pred EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
..|+.+.++......+|+|++|..-|. .-..++.+.+++.-
T Consensus 30 a~~~~eal~~l~~~~~DlvllD~~mp~--------~dG~ell~~lr~~~ 70 (387)
T 1ny5_A 30 AERGKEAYKLLSEKHFNVVLLDLLLPD--------VNGLEILKWIKERS 70 (387)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESBCSS--------SBHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHHhhC
Confidence 455555544322357999999987662 22457777777643
No 415
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=27.45 E-value=1e+02 Score=25.30 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=31.4
Q ss_pred EEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCc
Q psy4593 68 CSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTY 105 (132)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~ 105 (132)
.+|.++...+....+.+.+.++++||+..+.+...|+|
T Consensus 391 liW~Et~~P~~~~a~~fa~~i~~~~P~~~LaYN~SPSF 428 (538)
T 1dqu_A 391 LIWMESKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSF 428 (538)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHCTTCEEEEECCSSS
T ss_pred eEEeccCCCCHHHHHHHHHHHHHhCCCceEEecCCcch
Confidence 35666655566788999999999999999988889998
No 416
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=26.75 E-value=31 Score=23.77 Aligned_cols=18 Identities=6% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHhcCCCCCeecEEEEcCC
Q psy4593 18 DFMSGPVKNMCGLVVSGAA 36 (132)
Q Consensus 18 ~~l~~~~~~~yDvIi~D~~ 36 (132)
+.++. -.+.||+||+|+.
T Consensus 103 ~~l~~-l~~~yD~viiD~~ 120 (237)
T 1g3q_A 103 EVIKS-LKDKFDFILIDCP 120 (237)
T ss_dssp HHHHT-TGGGCSEEEEECC
T ss_pred HHHHH-HHhcCCEEEEECC
Confidence 34445 4578999999985
No 417
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=26.60 E-value=76 Score=23.39 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCcEEEEe--cCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593 51 ASYFELMSRALRPGGIVCSQ--AGTLWYSLDCVGNTLQHCASVFPRVAYGATCV 102 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~--~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~ 102 (132)
..+=+.|+.+...|.-+++- .++.....+-+.++++-+.+.|.+|.+.....
T Consensus 16 ~p~t~~C~~i~~~g~HallGVSpgNsyFs~drl~~li~Wa~~~F~~vdVli~D~ 69 (247)
T 3oqv_A 16 EILGDRSRLIRQRGEHALIGISAGNSYFSQKNTVMLLQWAGQRFERTDVVYVDT 69 (247)
T ss_dssp ------------CEEEEEEEEESSCTTCCHHHHHHHHHHHHHHEEEEEEEEECS
T ss_pred ccCchhHHHHHhCCCeEEEEeCCCCcccCHHHHHHHHHHHHccCCceEEEeCCh
Confidence 34446799999988887764 57777788889999999999999999865544
No 418
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=26.27 E-value=82 Score=23.69 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 274 ~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 274 VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHHHhhccCCEEEEE
Confidence 46789999999997 998864
No 419
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=26.13 E-value=1.7e+02 Score=22.72 Aligned_cols=47 Identities=6% Similarity=-0.031 Sum_probs=32.1
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
.+.|++|+|++-.. ...++..-...+|.+.+++.++.+|.+++.+-+
T Consensus 196 ~~~D~Li~Esty~~-~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa 242 (459)
T 2i7t_A 196 IKPDILIIESTYGT-HIHEKREEREARFCNTVHDIVNRGGRGLIPVFA 242 (459)
T ss_dssp SCCSEEEEECTTTT-CCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCeEEEECCCCCC-CCCCChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 47899999986331 012333334567889999999999988876533
No 420
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=25.97 E-value=84 Score=23.54 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 272 ~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 272 IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEE
Confidence 45688999999999 998864
No 421
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.84 E-value=83 Score=23.06 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=27.4
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE-EecCCCCCChHHHHHHHHHHHhh
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC-SQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~-~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
.+.||+||+|+.-- ... .+. .+...+ -+++++ +..+. .....+...++.+++.
T Consensus 199 ~~~yD~VIIDtpp~---~~~------~da--~~l~~~-aD~vllVv~~~~--~~~~~~~~~~~~l~~~ 252 (286)
T 3la6_A 199 SKNYDLVLIDTPPI---LAV------TDA--AIVGRH-VGTTLMVARYAV--NTLKEVETSLSRFEQN 252 (286)
T ss_dssp HHHCSEEEEECCCT---TTC------THH--HHHTTT-CSEEEEEEETTT--SBHHHHHHHHHHHHHT
T ss_pred HhCCCEEEEcCCCC---cch------HHH--HHHHHH-CCeEEEEEeCCC--CcHHHHHHHHHHHHhC
Confidence 35899999998521 111 111 111122 345544 44322 2345567777777765
No 422
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=25.69 E-value=67 Score=27.12 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=30.8
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..||.+|.|.++. ++++-+..+..-++-||++++-+
T Consensus 71 ~e~~~~v~d~~~~----------~~pn~la~~~gtv~gGG~lvll~ 106 (671)
T 2zpa_A 71 REFRHAVFDARHG----------FDAAAFAALSGTLKAGSWLVLLL 106 (671)
T ss_dssp CCBSSEEEECSSC----------CCHHHHHHHHTTBCTTCEEEEEE
T ss_pred CccCEEEEEcCCC----------CCHHHHHHHhhheecceEEEEEc
Confidence 5799999999866 36888999999999999999753
No 423
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=25.61 E-value=1.1e+02 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+.++.+.++|+++|.++.-
T Consensus 250 ~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 250 DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred hhhHHHHHHHhcCCCEEEEE
Confidence 45688999999999999864
No 424
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural genomics, PSI-2, protein structure initiative; 2.19A {Geobacter sulfurreducens}
Probab=25.41 E-value=40 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=17.4
Q ss_pred cHHHHHHHHHhcCCCcEEEEec
Q psy4593 50 QASYFELMSRALRPGGIVCSQA 71 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~ 71 (132)
..+.+......|+|||+++.|.
T Consensus 78 ~~~~~~~~~~~l~~gg~vi~ns 99 (183)
T 3on3_A 78 TQEACDKYSADLKEGGVLLVDS 99 (183)
T ss_dssp SHHHHHHSTTTSCTTCEEEEET
T ss_pred CHHHHHHHHhccCCCeEEEEeC
Confidence 4455566678899999999996
No 425
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.26 E-value=34 Score=24.21 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=24.6
Q ss_pred CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593 24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS 69 (132)
Q Consensus 24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~ 69 (132)
.+.+||+||+|-... .-.-.-+-..+.++.+.++-..--++++
T Consensus 117 ~~~~yDlvILDEi~~---al~~g~l~~~ev~~~l~~Rp~~~~vIlT 159 (196)
T 1g5t_A 117 ADPLLDMVVLDELTY---MVAYDYLPLEEVISALNARPGHQTVIIT 159 (196)
T ss_dssp TCTTCSEEEEETHHH---HHHTTSSCHHHHHHHHHTSCTTCEEEEE
T ss_pred hcCCCCEEEEeCCCc---cccCCCCCHHHHHHHHHhCcCCCEEEEE
Confidence 347899999996432 1112234456778887754444444443
No 426
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=25.23 E-value=25 Score=26.32 Aligned_cols=28 Identities=14% Similarity=-0.142 Sum_probs=20.7
Q ss_pred CCCcEEEEccHHHHhcCCCCCeecEEEEcC
Q psy4593 6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGA 35 (132)
Q Consensus 6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~ 35 (132)
.++++++.+|+.++-- .+..||+|+.++
T Consensus 95 ~~~v~vi~gD~l~~~~--~~~~fD~Iv~Nl 122 (295)
T 3gru_A 95 YNNIEIIWGDALKVDL--NKLDFNKVVANL 122 (295)
T ss_dssp CSSEEEEESCTTTSCG--GGSCCSEEEEEC
T ss_pred CCCeEEEECchhhCCc--ccCCccEEEEeC
Confidence 3689999999987521 234699999775
No 427
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=24.97 E-value=29 Score=24.64 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=13.2
Q ss_pred HHhcCCCCCeecEEEEcCC
Q psy4593 18 DFMSGPVKNMCGLVVSGAA 36 (132)
Q Consensus 18 ~~l~~~~~~~yDvIi~D~~ 36 (132)
+.++. -.+.||+||+|+.
T Consensus 136 ~~l~~-l~~~yD~viiD~p 153 (267)
T 3k9g_A 136 TSLGT-LYYKYDYIVIDTN 153 (267)
T ss_dssp HHHHT-TCTTCSEEEEEEC
T ss_pred HHHHH-hhcCCCEEEEECc
Confidence 44555 4568999999985
No 428
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=24.73 E-value=80 Score=19.92 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593 54 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY 97 (132)
Q Consensus 54 ~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~ 97 (132)
++.+.+.+.|+-++-.+........+.+...++.+.+.||....
T Consensus 30 ~~~~~~~~a~d~~~~~~~~~~~~G~~~~~~~~~~~~~~~pd~~~ 73 (146)
T 3kkg_A 30 RDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEV 73 (146)
T ss_dssp HHHHHHHEEEEEEEEETTSCCEESHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHcCCCeEEecCCCCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 56778889998777644322334667789999999999998665
No 429
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=24.69 E-value=28 Score=26.64 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=25.5
Q ss_pred EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc
Q psy4593 12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL 61 (132)
Q Consensus 12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L 61 (132)
...||.+.++......+|+|++|..-|. . -..++.+.+++.-
T Consensus 29 ~a~~~~eal~~l~~~~~DlvllDi~mP~--~------dG~ell~~lr~~~ 70 (368)
T 3dzd_A 29 TAKTLREAEKKIKELFFPVIVLDVWMPD--G------DGVNFIDFIKENS 70 (368)
T ss_dssp EESSHHHHHHHHHHBCCSEEEEESEETT--E------ETTTHHHHHHHHC
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCC--C------CHHHHHHHHHhhC
Confidence 3456655554423367999999987662 1 1245667776543
No 430
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.64 E-value=47 Score=18.91 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhCCCce
Q psy4593 79 DCVGNTLQHCASVFPRVA 96 (132)
Q Consensus 79 ~~~~~~~~~l~~vF~~v~ 96 (132)
..+.++++.+++.||++-
T Consensus 11 ~q~~~mv~~V~~mfP~vp 28 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQVP 28 (58)
T ss_dssp CHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 357889999999999875
No 431
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=24.63 E-value=1.2e+02 Score=22.30 Aligned_cols=76 Identities=14% Similarity=0.026 Sum_probs=45.5
Q ss_pred HHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC--CCCChHHHHHHHHHHHhhCC
Q psy4593 16 CTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT--LWYSLDCVGNTLQHCASVFP 93 (132)
Q Consensus 16 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~--~~~~~~~~~~~~~~l~~vF~ 93 (132)
+.+++++ .....-+-+...+++ +...-.+.+++..+.+.+.+-|+-.++... -...+..+..+++.+++.+|
T Consensus 126 ~i~~a~~-~G~~v~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~ 199 (298)
T 2cw6_A 126 ILKAAQS-ANISVRGYVSCALGC-----PYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVP 199 (298)
T ss_dssp HHHHHHH-TTCEEEEEEETTTCB-----TTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-CCCeEEEEEEEEeeC-----CcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCC
Confidence 4455555 333333334455543 222336788888888887777764443211 12356788999999999998
Q ss_pred CceE
Q psy4593 94 RVAY 97 (132)
Q Consensus 94 ~v~~ 97 (132)
.+.+
T Consensus 200 ~~~i 203 (298)
T 2cw6_A 200 LAAL 203 (298)
T ss_dssp GGGE
T ss_pred CCeE
Confidence 6543
No 432
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.52 E-value=46 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhCCCce
Q psy4593 80 CVGNTLQHCASVFPRVA 96 (132)
Q Consensus 80 ~~~~~~~~l~~vF~~v~ 96 (132)
.+.++++.+++.||++-
T Consensus 12 ql~~mv~~V~~mfP~vp 28 (61)
T 2ekf_A 12 QLATLAQRVKEVLPHVP 28 (61)
T ss_dssp CHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 47889999999999875
No 433
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=23.50 E-value=50 Score=24.79 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q psy4593 51 ASYFELMSRALRPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~Gil~~~ 70 (132)
.+.++.+.+.|+++|.++.-
T Consensus 269 ~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 269 PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEe
Confidence 45688899999999999864
No 434
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=23.47 E-value=37 Score=24.16 Aligned_cols=11 Identities=0% Similarity=-0.115 Sum_probs=9.9
Q ss_pred CeecEEEEcCC
Q psy4593 26 NMCGLVVSGAA 36 (132)
Q Consensus 26 ~~yDvIi~D~~ 36 (132)
+.||+||+|+.
T Consensus 127 ~~yD~ViID~p 137 (262)
T 2ph1_A 127 GELDHLLIDLP 137 (262)
T ss_dssp CSCSEEEEECC
T ss_pred cCCCEEEEECc
Confidence 68999999985
No 435
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=23.38 E-value=1e+02 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 271 ~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 271 VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHHhhccCCcEEEEE
Confidence 45688899999999 999864
No 436
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A
Probab=22.90 E-value=94 Score=24.42 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC--C------hHHHHHHHHHHHhhCCC-c
Q psy4593 25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY--S------LDCVGNTLQHCASVFPR-V 95 (132)
Q Consensus 25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~--~------~~~~~~~~~~l~~vF~~-v 95 (132)
+.+++.++.|+..- ..+..-.--.+|++...+.|.++|.+++....+.. + ...+..+.+++...+|+ .
T Consensus 80 ~~~~~~~~~d~~~~---~~~~~l~~~~~~~~~~~~~l~~~~r~vt~g~~~~~~~~~~~~~~~a~l~Gl~r~~~~E~p~~~ 156 (454)
T 3u0b_A 80 ADSFGGVVFDATGI---TEAEGLKELYTFFTPLLRNLAPCARVVVVGTTPAEAGSVHAQVVQRALEGFTRSLGKELRRGA 156 (454)
T ss_dssp SSCEEEEEEECTTC---CSGGGGHHHHHHHGGGGGGEEEEEEEEEEEECGGGSSSHHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCcceEEEECCCC---CCHHHHHHHHHHHHHHHHhcCCCceEEEECCccCCCCCccccHHHHHHHHHHHHHHHhCCCCc
Confidence 35899999998754 23333223467888888899999999876321111 1 12467778888888894 5
Q ss_pred eEeEEe
Q psy4593 96 AYGATC 101 (132)
Q Consensus 96 ~~~~~~ 101 (132)
..-...
T Consensus 157 ~~~~vd 162 (454)
T 3u0b_A 157 TVSLVY 162 (454)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 443333
No 437
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=22.20 E-value=25 Score=25.44 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=12.5
Q ss_pred HhcCCCCCeecEEEEcCC
Q psy4593 19 FMSGPVKNMCGLVVSGAA 36 (132)
Q Consensus 19 ~l~~~~~~~yDvIi~D~~ 36 (132)
.++. -.+.||+||+|+.
T Consensus 147 ~l~~-l~~~yD~IiiD~p 163 (298)
T 2oze_A 147 LLAP-LKSDYDLIIIDTV 163 (298)
T ss_dssp HHGG-GGGGCSEEEEEEC
T ss_pred HHHH-HhcCCCEEEEECC
Confidence 3444 3468999999986
No 438
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=21.87 E-value=99 Score=23.23 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHHHHHHHhc-CCCcEEEEe
Q psy4593 51 ASYFELMSRAL-RPGGIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L-~p~Gil~~~ 70 (132)
.+.++.+.++| +++|.++.-
T Consensus 242 ~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 242 VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp HHHHHHHHHHSCTTCEEEEES
T ss_pred hHHHHHHHHHhhcCCCEEEEE
Confidence 45688888899 599998753
No 439
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=21.70 E-value=1.2e+02 Score=25.01 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=25.8
Q ss_pred CeecEEEEcCCCCCC-CCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593 26 NMCGLVVSGAAGPGR-VVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~-~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~ 73 (132)
...|++++|++.... +..++..-...+|.+.+++.++.+|.+++.+-+
T Consensus 372 ~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa 420 (640)
T 2xr1_A 372 PRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFA 420 (640)
T ss_dssp SCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEEECCT
T ss_pred CCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 478999999885410 002333445678888899888889988886533
No 440
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=21.63 E-value=1.1e+02 Score=22.77 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 272 ~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 272 LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHHHHHHHHhhcCCcEEEEe
Confidence 45688899999999 998864
No 441
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=21.44 E-value=1e+02 Score=22.97 Aligned_cols=76 Identities=18% Similarity=0.068 Sum_probs=44.3
Q ss_pred cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC-C-CCChHHHHHHHHHHHhhC
Q psy4593 15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT-L-WYSLDCVGNTLQHCASVF 92 (132)
Q Consensus 15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~-~-~~~~~~~~~~~~~l~~vF 92 (132)
+..+++++ .....-+-+...+++ +...-.+.+|+..+.+.+.+-|+-.++... . ...+.....+++.+++.+
T Consensus 126 ~~v~~ak~-~G~~v~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 199 (307)
T 1ydo_A 126 QVNNDAQK-ANLTTRAYLSTVFGC-----PYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARF 199 (307)
T ss_dssp HHHHHHHH-TTCEEEEEEECTTCB-----TTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-CCCEEEEEEEEEecC-----CcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 34455554 222222234455543 222345788888888777766764443211 1 235677899999999999
Q ss_pred CCce
Q psy4593 93 PRVA 96 (132)
Q Consensus 93 ~~v~ 96 (132)
|.+.
T Consensus 200 ~~~~ 203 (307)
T 1ydo_A 200 PANQ 203 (307)
T ss_dssp CGGG
T ss_pred CCCe
Confidence 8554
No 442
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=21.13 E-value=49 Score=22.87 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=20.8
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593 50 QASYFELMSRALRPGGIVCSQAGTLW 75 (132)
Q Consensus 50 t~eF~~~~~~~L~p~Gil~~~~~~~~ 75 (132)
+.+-++.+.+.|+.||+++..+..-+
T Consensus 6 ~~~~i~~a~~~L~~G~iva~ptdt~y 31 (188)
T 1hru_A 6 QRDAIAAAIDVLNEERVIAYPTEAVF 31 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSE
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCEe
Confidence 45568899999999999998865544
No 443
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=21.06 E-value=55 Score=24.01 Aligned_cols=44 Identities=7% Similarity=-0.033 Sum_probs=26.0
Q ss_pred CcEEE-EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593 8 PVLSA-RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR 59 (132)
Q Consensus 8 rv~v~-~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~ 59 (132)
..++. ..||.+.++......+|+||+|..-|. .-..++.+.+++
T Consensus 43 ~~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~--------~~G~~~~~~l~~ 87 (358)
T 3bre_A 43 GIDFHFCSDPQQAVAVANQIKPTVILQDLVMPG--------VDGLTLLAAYRG 87 (358)
T ss_dssp TEEEEEECCHHHHHHHHHHHCCSEEEEESBCSS--------SBHHHHHHHHTT
T ss_pred CcEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC--------CCHHHHHHHHhc
Confidence 34433 456666654422357999999987662 123466666654
No 444
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=20.99 E-value=23 Score=23.83 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=9.9
Q ss_pred CCeecEEEEcCC
Q psy4593 25 KNMCGLVVSGAA 36 (132)
Q Consensus 25 ~~~yDvIi~D~~ 36 (132)
.+.||+||+|+.
T Consensus 73 ~~~yD~viiD~~ 84 (206)
T 4dzz_A 73 LADYDFAIVDGA 84 (206)
T ss_dssp TTTSSEEEEECC
T ss_pred cCCCCEEEEECC
Confidence 356999999985
No 445
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=20.88 E-value=89 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 276 ~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 276 AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHHHhhcCCCEEEEE
Confidence 45688999999999 998864
No 446
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.83 E-value=85 Score=24.87 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=50.0
Q ss_pred eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCC---CceEeEEecc
Q psy4593 27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP---RVAYGATCVP 103 (132)
Q Consensus 27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~---~v~~~~~~~p 103 (132)
..++...+...-....+....| .+-.+.+.+..+|..|++..++..-.-.+-+..+.+.+++.+| .+.+.....|
T Consensus 59 ~~~~~sT~l~E~d~VfGg~~~L--~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pVi~v~tp 136 (458)
T 3pdi_B 59 PVPLQTTAMDQVSSVMGADENV--VEALKTICERQNPSVIGLLTTGLSETQGCDLHTALHEFRTQYEEYKDVPIVPVNTP 136 (458)
T ss_dssp CCCCEECCCCTTTTSSCSHHHH--HHHHHHHHHHTCCSEEEEEECHHHHTTCTTHHHHHHHTTTSCCSCSCSCEEEECCC
T ss_pred CcceeeecccccccccCcHHHH--HHHHHHHHHhcCCCEEEEECCcHHHHhcCCHHHHHHHHHHhccccCCCeEEEeeCC
Confidence 3456666666553222333333 4556677777899999988754333322347888889988875 5566677788
Q ss_pred CcCC
Q psy4593 104 TYPS 107 (132)
Q Consensus 104 ~~~~ 107 (132)
.|.+
T Consensus 137 gf~g 140 (458)
T 3pdi_B 137 DFSG 140 (458)
T ss_dssp TTSS
T ss_pred CcCC
Confidence 8854
No 447
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=20.48 E-value=3.1e+02 Score=22.13 Aligned_cols=61 Identities=8% Similarity=0.045 Sum_probs=35.6
Q ss_pred CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593 26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP-GGIVCSQAGTLWYSLDCVGNTLQHCASV 91 (132)
Q Consensus 26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p-~Gil~~~~~~~~~~~~~~~~~~~~l~~v 91 (132)
+..|++|+|++.. ..+....-..++.+.+.+.++. +|-+++.+-+ .+..-.+.++..+++.
T Consensus 187 ~~~d~Li~esT~~---~~~~~~~se~~v~~~i~~~~~~~~grvii~~fa--snv~R~q~il~~a~~~ 248 (555)
T 3zq4_A 187 EGVLCLLSDSTNS---ENPEFTMSERRVGESIHDIFRKVDGRIIFATFA--SNIHRLQQVIEAAVQN 248 (555)
T ss_dssp TCEEEEEEECTTT---TCCSCCCCHHHHHHHHHHHHHHCCSCEEEECCT--TCHHHHHHHHHHHHTT
T ss_pred cCCcEEEecCccc---CCCCCCCCHHHHHHHHHHHHHhCCCEEEEEECh--hHHHHHHHHHHHHHHH
Confidence 3589999999865 2233334457777788887764 6766665322 1223344455544443
No 448
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=20.08 E-value=97 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCC-cEEEEe
Q psy4593 51 ASYFELMSRALRPG-GIVCSQ 70 (132)
Q Consensus 51 ~eF~~~~~~~L~p~-Gil~~~ 70 (132)
.+.++.+.+.|+++ |.++.-
T Consensus 273 ~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 273 VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHHHhhcCCcEEEEE
Confidence 45688999999999 998864
Done!