RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4593
(132 letters)
>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase. Spermine
and spermidine are polyamines. This family includes
spermidine synthase that catalyzes the fifth (last) step
in the biosynthesis of spermidine from arginine, and
spermine synthase.
Length = 240
Score = 92.0 bits (229), Expect = 6e-24
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PAE+LF +++L+ RAL+ G+ +QA + W L+ + N L++ VFP V
Sbjct: 160 VGPAENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFPVVMPYVVP 219
Query: 102 VPTYPSGQIGFVLGS 116
VPTYPSG GF + S
Sbjct: 220 VPTYPSGGWGFAVCS 234
>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase.
Length = 308
Score = 92.0 bits (229), Expect = 2e-23
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
V PA+ LF+ +FE ++RALRPGG+VC+QA ++W +D + + + C F V Y T
Sbjct: 177 VGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWT 236
Query: 101 CVPTYPSGQIGFVLGS 116
VPTYPSG IGFVL S
Sbjct: 237 TVPTYPSGVIGFVLCS 252
>gnl|CDD|188048 TIGR00417, speE, spermidine synthase. the SpeE subunit of
spermidine synthase catalysesthe reaction (putrescine +
S-adenosylmethioninamine = spermidine +
5'-methylthioadenosine) and is involved in polyamine
biosynthesis and in the biosynthesis of spermidine from
arganine. The region between residues 77 and 120 of the
seed alignment is thought to be involved in binding to
decarboxylated SAM [Central intermediary metabolism,
Polyamine biosynthesis].
Length = 271
Score = 88.3 bits (219), Expect = 3e-22
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PAE+LF ++EL+ +AL P GI +Q+ + W L+ + + + FP Y
Sbjct: 157 VGPAETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFPITEYYTAA 216
Query: 102 VPTYPSGQIGFVLGSQ 117
+PTYPSG F + S+
Sbjct: 217 IPTYPSGLWTFTIASK 232
>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 68.9 bits (169), Expect = 5e-15
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAE+LF ++E RAL+ GI +QAG+ + + + ++ + VF V +P
Sbjct: 163 PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIP 222
Query: 104 TYPSGQIGFVLGS 116
TYPSG GF++ S
Sbjct: 223 TYPSGFWGFIVAS 235
>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional.
Length = 283
Score = 64.8 bits (159), Expect = 2e-13
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAE LF ++E RAL+ GI +Q+G+ +Y D + + + VFP V +P
Sbjct: 164 PAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIP 223
Query: 104 TYPSGQIGFVLGS 116
TYPSG F S
Sbjct: 224 TYPSGLWSFTFAS 236
>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal
membrane domain [General function prediction only].
Length = 508
Score = 39.4 bits (92), Expect = 2e-04
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 48 LFQASYFELMSRALRPGGIVCSQAGTLWYSLD---CVGNTLQHCA-SVFPRVAYGATCVP 103
L+ ++ L+SR L G++ QAG+ +++ + T++ V+P + VP
Sbjct: 384 LYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVH----VP 439
Query: 104 TYPSGQIGFVLGS 116
T+ G+ GF+L +
Sbjct: 440 TF--GEWGFILAA 450
>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase.
Length = 336
Score = 35.8 bits (83), Expect = 0.003
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 44 PAESLFQASYFELM-SRALRPGGIVCSQAG-------TLWYSLDCVGNTLQHCASVFPRV 95
P L+ S++E + L PGGI +QAG +S + NTL+ VF V
Sbjct: 192 PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFS--SIYNTLRQ---VFKYV 246
Query: 96 AYGATCVPTYPSGQIGFVLGS 116
VP++ G+V+ S
Sbjct: 247 VPYTAHVPSFAD-TWGWVMAS 266
>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional.
Length = 521
Score = 32.5 bits (75), Expect = 0.046
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 48 LFQASYFELMSRALRPGGIVCSQAGTLWY---SLDCVGNTLQHCASVFPRVAYGATCVPT 104
L+ ++ L+ R L P G++ Q+ + ++ + + TL+ A+ Y VP+
Sbjct: 392 LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLE--AAGLATTPYHVN-VPS 448
Query: 105 YPSGQIGFVLG 115
+ G+ GFVL
Sbjct: 449 F--GEWGFVLA 457
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 27.1 bits (61), Expect = 2.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 20/75 (26%)
Query: 50 QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV--PTYPS 107
QA ++ + L+P I+ ++ GT W+ L+ P+ G + P +
Sbjct: 4 QARLWQQVQNFLKPNDILVAETGTSWFGA----LDLK-----LPK---GTRFISQPLW-- 49
Query: 108 GQIGF----VLGSQL 118
G IG+ LG+ L
Sbjct: 50 GSIGYSVPAALGAAL 64
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 26.5 bits (59), Expect = 4.8
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 20/48 (41%)
Query: 41 VVCPAESL-FQASYFEL-------------------MSRALRPGGIVC 68
VV AE+L F + F+ M R L+PGG +
Sbjct: 106 VVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 26.5 bits (59), Expect = 5.5
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 41 VVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 78
E L Q + + L+PG ++ ++ GT ++
Sbjct: 356 YPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGA 393
>gnl|CDD|218110 pfam04489, DUF570, Protein of unknown function (DUF570). Protein
of unknown function, found in herpesvirus and
cytomegalovirus.
Length = 422
Score = 26.0 bits (57), Expect = 7.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 54 FELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPS 107
FEL++ RP ++ S L+++ D + LQH + + Y + YPS
Sbjct: 301 FELVTVRHRPPELLFSTNPKLFFTGDLLNCPLQHGPNEYELTVYAPYDIHFYPS 354
>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase
(QOR). NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 320
Score = 26.0 bits (58), Expect = 7.5
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 59 RALRPGGIVCSQAGTL 74
R LRPGGIVC G L
Sbjct: 226 RHLRPGGIVC-MTGLL 240
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 25.0 bits (55), Expect = 9.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 33 SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIV 67
G V + ++ L+PGG +
Sbjct: 65 DLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRL 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.436
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,437,809
Number of extensions: 535769
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 21
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)