RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4593
(132 letters)
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis
elegans} SCOP: c.66.1.17
Length = 314
Score = 107 bits (269), Expect = 2e-29
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAESLF SY+EL+ AL+ GI+ SQ ++W L + + + +FP V Y + V
Sbjct: 195 PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVS 254
Query: 104 TYPSGQIGFVLGS 116
TYPSG +G+++ +
Sbjct: 255 TYPSGSMGYLICA 267
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 106 bits (267), Expect = 2e-29
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAE+LF +++E + AL+P G +Q +LW + + N + + +F +V Y +P
Sbjct: 165 PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIP 224
Query: 104 TYPSGQIGFVLGS 116
TYP G IG + S
Sbjct: 225 TYPCGCIGILCCS 237
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 107 bits (268), Expect = 3e-29
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAE+LF +++E + AL+P G +Q +LW + + N + + +F +V Y +P
Sbjct: 203 PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIP 262
Query: 104 TYPSGQIGFVLGS 116
TYP G IG + S
Sbjct: 263 TYPCGCIGILCCS 275
>2o07_A Spermidine synthase; structural genomics, structural genomics
consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo
sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
3rw9_A*
Length = 304
Score = 105 bits (265), Expect = 6e-29
Identities = 38/73 (52%), Positives = 48/73 (65%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAESLF+ SY++LM AL+ G++C Q W LD + Q C S+FP VAY +P
Sbjct: 182 PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIP 241
Query: 104 TYPSGQIGFVLGS 116
TYPSGQIGF+L S
Sbjct: 242 TYPSGQIGFMLCS 254
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 105 bits (263), Expect = 1e-28
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
P ESLF ++++E R L PGGI +Q G + + ++ + + F V + +P
Sbjct: 171 PGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIP 230
Query: 104 TYPSGQIGFVLGS 116
TY G + F +
Sbjct: 231 TYYGGIMTFAWAT 243
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural
genomics, PSI, protein structure initiative; 1.50A
{Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Length = 296
Score = 103 bits (260), Expect = 3e-28
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
LF +++ AL+ G+ ++ +Y + + + VFP +
Sbjct: 178 QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMT 237
Query: 104 TYPSGQIGFVLGS 116
TYPSG + S
Sbjct: 238 TYPSGMWSYTFAS 250
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 103 bits (258), Expect = 4e-28
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PA +LF ++ +++AL+ GI +Q W++ + + N + +FP +P
Sbjct: 162 PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIP 221
Query: 104 TYPSGQIGFVLGS 116
TYPSG F +GS
Sbjct: 222 TYPSGLWTFTIGS 234
>1xj5_A Spermidine synthase 1; structural genomics, protein structure
initiative, CESG, AT1G23820, putrescine aminopropyl
transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP:
c.66.1.17 PDB: 2q41_A
Length = 334
Score = 103 bits (258), Expect = 1e-27
Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVA-YGATCV 102
PA+ LF+ +F+ ++RALRPGG+VC+QA +LW +D + + + +C +F Y T V
Sbjct: 208 PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSV 267
Query: 103 PTYPSGQIGFVLGS 116
PTYPSG IGF+L S
Sbjct: 268 PTYPSGVIGFMLCS 281
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 101 bits (253), Expect = 3e-27
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCV 102
PA LF ++++ + R L+P GI C+Q ++W L+ + + F V Y V
Sbjct: 183 PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHV 242
Query: 103 PTYPSGQIGFVLGS 116
PTYP G IG ++ S
Sbjct: 243 PTYPCGSIGTLVCS 256
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 94.2 bits (235), Expect = 9e-25
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PA+ LF ++ + AL GI +QAG+++ D + + + VF RV Y + V
Sbjct: 166 PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVI 225
Query: 104 TYPSGQIGFVLGS 116
Y S F++G
Sbjct: 226 GYASP-WAFLVGV 237
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine
synthase, riken STR genomics/proteomics initiative,
RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB:
3anx_A*
Length = 314
Score = 90.1 bits (224), Expect = 6e-23
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 38 PGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH-CASVFPRVA 96
P PA L+ ++ L+ L PGG++ Q G + + V + F V
Sbjct: 162 PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR 221
Query: 97 YGATCVPTYPSGQIGFVLGS 116
+P + GF+L S
Sbjct: 222 SYKNHIPGFFLN-FGFLLAS 240
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 79.1 bits (195), Expect = 1e-18
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGA--TC 101
+ F +L + L+ G +Q + + + + + ++ V + C
Sbjct: 287 DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT-EALSLYEEQLGRLYCPVEFSKEIVC 345
Query: 102 VPTYPSGQIGFVLGS 116
VP+Y F
Sbjct: 346 VPSYLELW-VFYTVW 359
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 74.4 bits (183), Expect = 3e-17
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
+ L R L+ G+ S A + N L++ VF +
Sbjct: 153 RIDGLK---------RMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLR 203
Query: 104 TYPSGQIGFVLGS 116
+ G++ S
Sbjct: 204 ILSNK--GYIYAS 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 3e-04
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 40/127 (31%)
Query: 41 VVCPAESLFQASYFELMSRAL--RPG--------------GIV----CSQAGTLWYS-LD 79
+ CP + Q +++ + ++ L PG G+V ++ + W S
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-WESFFV 294
Query: 80 CVGNTLQ-------HCASVFPRVAYGATCVPTYPSGQIGF------VLG---SQLLK--Q 121
V + C +P + + + G + Q+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 122 HANSHVP 128
NSH+P
Sbjct: 355 KTNSHLP 361
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 36.5 bits (84), Expect = 0.001
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
++ +FE R L PGG+ + G L + L VF VA A
Sbjct: 173 TPQNFTTVEFFEHCHRGLAPGGLYVANCGD-HSDLRGAKSELAGMMEVFEHVAVIADPPM 231
Query: 104 TYPSGQIGFVL 114
+L
Sbjct: 232 LKGRRYGNIIL 242
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.052
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 15/93 (16%)
Query: 4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-----VVCPAESLFQASYFEL-- 56
R P L RQ + +++ G G G+ VC + + F++
Sbjct: 132 SRLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 57 --MSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87
+ P ++ L Y +D +
Sbjct: 187 LNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSD 218
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 28.4 bits (64), Expect = 0.60
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLW 75
+ LR GG + A L
Sbjct: 145 LVDAAWPLLRRGGALVL-ADALL 166
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 27.8 bits (62), Expect = 1.0
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 51 ASYFELMSRALRPGGIV 67
A EL++++L+PGGI+
Sbjct: 120 AGAEELLAQSLKPGGIM 136
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 76
P SL Q +++ + +RPG I+ + GT +
Sbjct: 356 PDGSLTQENFWRTLQTFIRPGDIILADQGTSAF 388
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.3 bits (61), Expect = 1.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 48 LFQASYFELMSRALRPGGIV 67
+ Q + EL+ L+ GG+
Sbjct: 127 IVQVPFAELVKSKLQLGGVF 146
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLWY 76
Y+EL + + P G++ W
Sbjct: 152 YYELALKLVTPKGLIAIDN-IFWD 174
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 26.8 bits (60), Expect = 1.8
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 12/35 (34%)
Query: 53 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87
E M+R L ++ + N L+
Sbjct: 142 VLERMNRCLAKNALLIA---------V---NALRR 164
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 26.8 bits (60), Expect = 2.1
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 48 LFQASYFELMSRALRPGGIV 67
L + + + + GG +
Sbjct: 130 LTYSHFLKKYEEVMGKGGSI 149
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 26.8 bits (60), Expect = 2.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 53 YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH 87
+FE+ + L+ G+V + D N L H
Sbjct: 158 FFEIYTPLLKHQGLVIT---------D---NVLYH 180
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 26.4 bits (59), Expect = 2.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 48 LFQASYFELMSRALRPGGIV 67
L ++ + R L G +
Sbjct: 133 LTYKTFLDTFKRILPENGEI 152
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 26.7 bits (60), Expect = 2.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 76
P+ L A + L P V ++ G W+
Sbjct: 361 PSAPLVNAEIARQVEALLTPNTTVIAETGDSWF 393
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 26.6 bits (59), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLWY 76
Y+E + LRPGGI+ LW
Sbjct: 161 YYERCLQLLRPGGILAVL-RVLWR 183
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 26.3 bits (58), Expect = 3.1
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 49 FQASYFELMSRALRPGGIVCSQAGTLW 75
+ S+ +++++ L+P G G +
Sbjct: 62 WFLSFAKVVNKKLKPDGSFVVDFGGAY 88
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 26.3 bits (59), Expect = 3.5
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWY 76
L ++ L + ++ G W+
Sbjct: 357 DEAGLTNDEIVRHINALLTSNTTLVAETGDSWF 389
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 38 PGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY 76
V + L Q + + L+ G +V ++ GT +
Sbjct: 355 ANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAF 393
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 26.1 bits (58), Expect = 3.8
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLWY 76
Y+E+ LR GG++ LW+
Sbjct: 164 YYEIGLNLLRRGGLMVI-DNVLWH 186
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 25.7 bits (57), Expect = 4.4
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLW 75
Y R RPG ++ +
Sbjct: 152 YLRWALRYSRPGTLIIGD-NVVR 173
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 25.8 bits (56), Expect = 4.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 16 CTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
D + + L+ C E + ++ + M L+P G
Sbjct: 121 KEDVFTWRPTELFDLIFDYVF-----FCAIEPEMRPAWAKSMYELLKPDG 165
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.0 bits (57), Expect = 4.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 54 FELMSRALRPGGIVCSQAGTLWYSLD 79
F + R L P G++ + + L
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQ 160
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 26.0 bits (57), Expect = 4.5
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 41 VVCPAESLF------QASYFELMSRALRPGGIV 67
VV + S+ + + + L PGG
Sbjct: 154 VVISSGSINELDEADRRGLYASVREHLEPGGKF 186
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 25.6 bits (56), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 50 QASYFELMSRALRPGGI 66
A +L+ RAL+PGG+
Sbjct: 120 LADVLKLIWRALKPGGL 136
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 26.0 bits (57), Expect = 5.0
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 51 ASYFELMSRALRPGGI 66
F SR L+ GG
Sbjct: 201 HDLFSEHSRFLKVGGR 216
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 25.6 bits (56), Expect = 5.3
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 41 VVCPAESLF-------QASYFELMSRALRPGGIVC 68
V C S+ + E + + P G+V
Sbjct: 114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 25.4 bits (56), Expect = 5.8
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 48 LFQASYFELMSRALRPGGIV 67
+ + + LR GG+V
Sbjct: 145 IISPTLLAEYAYVLRVGGLV 164
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 25.3 bits (56), Expect = 5.9
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 53 YFELMSRALRPGGIVCSQAGTLW 75
YFE + RPG ++ +
Sbjct: 149 YFEWALKLSRPGTVIIGD-NVVR 170
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 25.6 bits (56), Expect = 5.9
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 57 MSRALRPGGIVC 68
+ + L+PGG +
Sbjct: 128 LKKVLKPGGTIT 139
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 25.5 bits (56), Expect = 6.0
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 41 VVCPAESLF-------QASYFELMSRALRPGGIVC 68
+ C +S YF+ +S L+ GG+
Sbjct: 105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 25.6 bits (57), Expect = 6.3
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 51 ASYFELMSRALRPGGIVCSQA 71
+F+ + G + Q+
Sbjct: 174 DDFFKRCFNIMPADGRMTVQS 194
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 25.4 bits (55), Expect = 6.4
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 50 QASYFELMSRALRPGGIV 67
+ + + L G +
Sbjct: 142 RELLGQSLRILLGKQGAM 159
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 25.2 bits (55), Expect = 6.5
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 50 QASYFELMSRALRPGGI 66
+ + + + L+PGG+
Sbjct: 110 RQQLYPKVYQGLKPGGV 126
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 25.3 bits (55), Expect = 7.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 50 QASYFELMSRALRPGGIV 67
+++E + A+ PGG+V
Sbjct: 125 FEAFWESVRSAVAPGGVV 142
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 25.1 bits (55), Expect = 7.8
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 41 VVCPAESLF-------QASYFELMSRALRPGGIVC 68
+ +SL F+ +R L GG +
Sbjct: 100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 25.1 bits (55), Expect = 8.1
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 41 VVCPAESLF-------QASYFELMSRALRPGGIVC 68
VV S+ + + L PGG+V
Sbjct: 104 VVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 24.9 bits (55), Expect = 8.8
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 51 ASYFELMSRALRPGGI 66
++F+ G
Sbjct: 163 DTFFKKFYNLTPDDGR 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.436
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,976,021
Number of extensions: 103800
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 59
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)