RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4593
(132 letters)
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
elegans [TaxId: 6239]}
Length = 312
Score = 67.5 bits (164), Expect = 5e-15
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAESLF SY+EL+ AL+ GI+ SQ ++W L + + + +FP V Y + V
Sbjct: 193 PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVS 252
Query: 104 TYPSGQIGFVLGS 116
TYPSG +G+++ +
Sbjct: 253 TYPSGSMGYLICA 265
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima
[TaxId: 2336]}
Length = 295
Score = 64.4 bits (156), Expect = 6e-14
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
LF +++ AL+ G+ ++ +Y + + + VFP +
Sbjct: 177 QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMT 236
Query: 104 TYPSGQIGFVLGS 116
TYPSG + S
Sbjct: 237 TYPSGMWSYTFAS 249
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 60.2 bits (145), Expect = 2e-12
Identities = 38/73 (52%), Positives = 48/73 (65%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PAESLF+ SY++LM AL+ G++C Q W LD + Q C S+FP VAY +P
Sbjct: 165 PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIP 224
Query: 104 TYPSGQIGFVLGS 116
TYPSGQIGF+L S
Sbjct: 225 TYPSGQIGFMLCS 237
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 312
Score = 57.9 bits (139), Expect = 2e-11
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D ++ + +V+ P PA L+ ++ L+ L PGG++ Q G
Sbjct: 139 DDARAYLERT-EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197
Query: 74 LWYSLDCVGNTLQH-CASVFPRVAYGATCVPTYPSGQIGFVLGS 116
+ + V + F V +P + GF+L S
Sbjct: 198 ILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN-FGFLLAS 240
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 274
Score = 57.5 bits (138), Expect = 2e-11
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
PA +LF ++ +++AL+ GI +Q W++ + + N + +FP +P
Sbjct: 162 PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIP 221
Query: 104 TYPSGQIGFVLGS 116
TYPSG F +GS
Sbjct: 222 TYPSGLWTFTIGS 234
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 290
Score = 56.0 bits (134), Expect = 7e-11
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 14 QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
D F+ + V+ ++ P + PA+ LF+ +F+ ++RALRPGG+VC+QA +
Sbjct: 141 GDGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAES 197
Query: 74 LWYSLDCVGNTLQHCASVFPR-VAYGATCVPTYPSGQIGFVLGS 116
LW +D + + + +C +F V Y T VPTYPSG IGF+L S
Sbjct: 198 LWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS 241
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 276
Score = 52.5 bits (125), Expect = 9e-10
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 42 VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
V PA+ LF ++ + AL GI +QAG+++ D + + + VF RV Y +
Sbjct: 161 VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFP 220
Query: 102 VPTYPSGQIGFVLGS 116
V Y S F++G
Sbjct: 221 VIGYASP-WAFLVGV 234
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 28.4 bits (62), Expect = 0.24
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
P SL Q +++ + +RPG I+ + GT + ++ R+ +
Sbjct: 1 PDGSLTQENFWRTLQTFIRPGDIILADQGTSAF------------GAIDLRLPADVNFIV 48
Query: 104 TYPSGQIGFVLGSQLLKQHANSHVPMT 130
G IG+ L + Q A + +
Sbjct: 49 QPLWGSIGYTLAAAFGAQTACPNRRVI 75
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 25.3 bits (54), Expect = 2.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 107 SGQIGFVLGSQLLKQHANSHV 127
+G IG + H + HV
Sbjct: 11 AGFIGSNFVHYVYNNHPDVHV 31
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 25.3 bits (54), Expect = 3.2
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 50 QASYFELMSRALRPGGIVC 68
+ ++ +RPGG++
Sbjct: 153 HRLALKNIASMVRPGGLLV 171
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 24.6 bits (53), Expect = 5.0
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLG 115
S F + T V Y + F++G
Sbjct: 224 PDLFGSKF----FMGTVVKKYEENPLHFLMG 250
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 24.3 bits (52), Expect = 5.3
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 22 GPVKNMCGLVVSGAAGPGRVVCPAESLFQA--SYFE 55
PV+ M + +G P R + + A F+
Sbjct: 148 EPVEIMAFEIATGTRKPNRGLITPDKALLAIEKGFK 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.436
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,776
Number of extensions: 19909
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 16
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)