BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4594
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1
Length = 302
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
K +G L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI G V
Sbjct: 57 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 107
>sp|Q64674|SPEE_MOUSE Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1
Length = 302
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
K +G L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI G V
Sbjct: 57 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 107
>sp|Q12455|SPSY_YEAST Spermine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPE4 PE=1 SV=1
Length = 300
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
K +GT L+LDGI+QCTEFDEF+Y EMI + + +H NPK+VLI G V
Sbjct: 52 KVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGV 102
>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC12C2.07c PE=3 SV=1
Length = 298
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 7 KVRVLSYPNKPFYPSSS--NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
KV+ + Y K Y + +G L+LDG IQ TE DEFSY EMIA L L SHPNPK
Sbjct: 31 KVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPK 90
Query: 65 KVLIFTVGGSTV 76
KVL+ G V
Sbjct: 91 KVLVIGGGDGGV 102
>sp|O48660|SPDE_NICSY Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1
Length = 314
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G L+LDG+IQ TE DE +Y EMIA LPLCS PNPKKVL+ G
Sbjct: 53 YQNVMVFQSST----YGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGG 108
Query: 73 GSTV 76
V
Sbjct: 109 DGGV 112
>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3
PE=3 SV=1
Length = 291
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+ G L+LD +IQCTE DEFSY EMI L + SHPNPKKVL+ G V
Sbjct: 51 DHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGV 100
>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1
Length = 334
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G LILDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 85 YGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 133
>sp|Q96556|SPD1_DATST Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1
Length = 308
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G LILDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G
Sbjct: 47 YQNVMVFQSST----YGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGG 102
Query: 73 GSTV 76
V
Sbjct: 103 DGGV 106
>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1
Length = 334
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 86 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 134
>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1
Length = 342
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 93 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 141
>sp|O48659|SPD2_HYONI Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1
Length = 308
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G
Sbjct: 47 YQNVVVFQSST----YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGG 102
Query: 73 GSTV 76
V
Sbjct: 103 DGGV 106
>sp|O48658|SPD1_HYONI Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1
Length = 315
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G
Sbjct: 55 YQNVMVFQSST----YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGG 110
Query: 73 GSTV 76
V
Sbjct: 111 DGGV 114
>sp|Q9ZS45|SPDE_SOLLC Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1
Length = 342
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 93 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 141
>sp|O82147|SPDE_COFAR Spermidine synthase OS=Coffea arabica PE=2 SV=1
Length = 316
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G L+LDG+IQ TE DE +Y EMIA LPLCS P+PKKVL+ G
Sbjct: 55 YQNVMVFQSST----YGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLVIGGG 110
Query: 73 GSTV 76
V
Sbjct: 111 DGGV 114
>sp|Q96557|SPD2_DATST Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1
Length = 317
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 68 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 116
>sp|Q12074|SPEE_YEAST Spermidine synthase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPE3 PE=1 SV=1
Length = 293
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+G L+LD +IQ TE DEF+Y EMIA L L SHPNPKKVL+ +GG
Sbjct: 54 YGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLV--IGG 97
>sp|O48661|SPD2_ARATH Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2
Length = 340
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS NPKKVL+ G V
Sbjct: 90 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGV 138
>sp|Q8RA94|SPEE1_THETN Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=speE1
PE=3 SV=1
Length = 277
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+FG L+LDGI+Q TE DEF Y EMI +PL +H NPK VLI +GG
Sbjct: 40 QFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLI--IGG 84
>sp|Q9XY92|SPEE_DICDI Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2
Length = 284
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKK 65
K FG L+LDG+IQ TE DEF+Y EMI +PL SHP+PK+
Sbjct: 45 KSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKR 84
>sp|Q814Q1|SPEE1_BACCR Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=speE1 PE=3 SV=1
Length = 275
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLI 68
+EFG LILDG++ TE DEF Y EM+A +PL +HPNP+ VLI
Sbjct: 39 EEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLI 81
>sp|Q9SMB1|SPD1_ORYSJ Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1
PE=2 SV=1
Length = 323
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 13 YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
Y N + SS+ +G L+LDG+IQ TE DE +Y EMI LPLCS +PKKVL+ G
Sbjct: 62 YQNVMVFQSST----YGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGG 117
Query: 73 GSTV 76
V
Sbjct: 118 DGGV 121
>sp|B0K172|SPEE_THEPX Spermidine synthase OS=Thermoanaerobacter sp. (strain X514)
GN=speE PE=3 SV=1
Length = 277
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+FG L LDGI+Q TE DEF Y EMI +PL +H NPK VLI VGG
Sbjct: 40 QFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLI--VGG 84
>sp|B0K9I5|SPEE_THEP3 Spermidine synthase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=speE PE=3 SV=1
Length = 277
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+FG L LDGI+Q TE DEF Y EMI +PL +H NPK VLI VGG
Sbjct: 40 QFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLI--VGG 84
>sp|Q8EXA3|SPEE2_LEPIN Spermidine synthase 2 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=speE2
PE=3 SV=2
Length = 280
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
FG LDG++ TE DEF+Y EMI +P+ SHPNP+KVL+ G G TV+
Sbjct: 43 FGRMFTLDGVVMMTEADEFAYHEMIVHVPMMSHPNPEKVLVIGGGDGGTVR 93
>sp|Q57761|SPEE_METJA Probable spermidine synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=speE PE=3 SV=1
Length = 293
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+FG ALILD Q TE DEF Y E+I+ +PL +HPNP+ VL+ G G TV+
Sbjct: 48 DFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVR 99
>sp|A4XKM9|SPEE_CALS8 Spermidine synthase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1
Length = 278
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLI 68
K+FG L+LDG +Q T DEF Y E+IA +PL +HPNPKKV +
Sbjct: 42 KQFGKMLVLDGAVQTTIVDEFCYHELIAHVPLFTHPNPKKVAV 84
>sp|A3DDA0|SPEE_CLOTH Spermidine synthase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=speE PE=3 SV=1
Length = 275
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
++FG L+LDGIIQ T DEF Y EMIA +PL +H NPKK L+ VGG
Sbjct: 39 EQFGRMLLLDGIIQTTVADEFVYHEMIAHVPLFTHKNPKKALV--VGG 84
>sp|A5N219|SPEE_CLOK5 Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=speE PE=3 SV=1
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
G L+LDGI+Q T DE+ Y EMI +PL +HPNP+KVLI G G TV+
Sbjct: 41 LGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVR 91
>sp|B9E5S1|SPEE_CLOK1 Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016)
GN=speE PE=3 SV=1
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
G L+LDGI+Q T DE+ Y EMI +PL +HPNP+KVLI G G TV+
Sbjct: 41 LGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVR 91
>sp|B9MRW0|SPEE_CALBD Spermidine synthase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=speE PE=3 SV=1
Length = 278
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLI 68
K+FG L+LDG +Q T DEF Y E+I+ +PL +HPNPKKV +
Sbjct: 42 KQFGRMLVLDGAVQTTIADEFCYHELISHVPLFTHPNPKKVAV 84
>sp|Q9K6B8|SPEE_BACHD Spermidine synthase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=speE PE=3
SV=1
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG L+LDG++ TE DEF Y EM+A +PL +HPNPK
Sbjct: 39 EEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPK 77
>sp|Q9WZC2|SPEE_THEMA Spermidine synthase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=speE PE=1 SV=1
Length = 296
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+ G LDGI TE DEF Y EM+A +P+ HPNPKKVLI G G T++
Sbjct: 55 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR 106
>sp|B9KAY3|SPEE_THENN Spermidine synthase OS=Thermotoga neapolitana (strain ATCC 49049 /
DSM 4359 / NS-E) GN=speE PE=3 SV=1
Length = 296
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+ G LDGI TE DEF Y EM+A +P+ HPNPKKVLI G G T++
Sbjct: 55 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR 106
>sp|B1I5Z0|SPEE_DESAP Spermidine synthase OS=Desulforudis audaxviator (strain MP104C)
GN=speE PE=3 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
FG L+LDGI+Q + DE+ Y EMI +PL +HP+P++VLI VGG
Sbjct: 41 FGRTLVLDGIVQTSVVDEYVYHEMITHVPLNTHPDPRRVLI--VGG 84
>sp|A9VSG3|SPEE_BACWK Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4)
GN=speE PE=3 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG LILDG++ TE DEF Y EM+A +PL +HPNP+
Sbjct: 39 EEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPE 77
>sp|Q72X78|SPEE_BACC1 Spermidine synthase OS=Bacillus cereus (strain ATCC 10987)
GN=speE PE=3 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG LILDG++ TE DEF Y EM+A +PL +HPNP+
Sbjct: 39 EEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPE 77
>sp|Q81JT0|SPEE1_BACAN Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG LILDG++ TE DEF Y EM+A +PL +HPNP+
Sbjct: 39 EEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPE 77
>sp|A7GVB2|SPEE_BACCN Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=speE PE=3 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG LILDG++ TE DEF Y EM+A +PL +HPNP+
Sbjct: 39 EEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPE 77
>sp|B0STV8|SPEE_LEPBP Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=speE PE=3 SV=1
Length = 281
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+ FG LDG+ T DE SY EMIA +P+ SHPNP+ VL+ G G TV+
Sbjct: 41 QSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVR 93
>sp|B0SI93|SPEE_LEPBA Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=speE PE=3 SV=1
Length = 281
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+ FG LDG+ T DE SY EMIA +P+ SHPNP+ VL+ G G TV+
Sbjct: 41 QSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVR 93
>sp|A5IJD3|SPEE_THEP1 Spermidine synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=speE PE=3 SV=1
Length = 296
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+ G LDGI TE DEF Y EM+A +P+ HPNPKKVLI G G T++
Sbjct: 55 DLGVVFSLDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR 106
>sp|Q5WB31|SPEE_BACSK Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE
PE=3 SV=1
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG L+LDG++ TE DEF Y EM+ +PL +HPNPK
Sbjct: 39 EEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPK 77
>sp|Q9SEH5|PMT3_TOBAC Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3
SV=1
Length = 381
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 29/45 (64%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
+G L LDG IQ TE F Y+EMI LPL S PNPKKVLI G
Sbjct: 133 YGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGG 177
>sp|Q42963|PMT1_TOBAC Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2
SV=1
Length = 375
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 29/45 (64%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
+G L LDG IQ TE F Y+EMI LPL S PNPKKVLI G
Sbjct: 127 YGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGG 171
>sp|Q8XMY8|SPEE_CLOPE Spermidine synthase OS=Clostridium perfringens (strain 13 / Type
A) GN=speE PE=3 SV=1
Length = 283
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+EFGT LDG++ TE DEF Y +MI +P+ ++PN K VL+ G G TV+
Sbjct: 39 QEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVR 91
>sp|Q0SVK7|SPEE_CLOPS Spermidine synthase OS=Clostridium perfringens (strain SM101 /
Type A) GN=speE PE=3 SV=1
Length = 283
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+EFGT LDG++ TE DEF Y +MI +P+ ++PN K VL+ G G TV+
Sbjct: 39 QEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVR 91
>sp|Q0TTQ7|SPEE_CLOP1 Spermidine synthase OS=Clostridium perfringens (strain ATCC 13124
/ NCTC 8237 / Type A) GN=speE PE=3 SV=1
Length = 283
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
+EFGT LDG++ TE DEF Y +MI +P+ ++PN K VL+ G G TV+
Sbjct: 39 QEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVR 91
>sp|P70998|SPEE_BACSU Spermidine synthase OS=Bacillus subtilis (strain 168) GN=speE
PE=1 SV=1
Length = 276
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
+EFG L LDG++ +E DEF Y EM+A +PL +HPNP+
Sbjct: 40 EEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPE 78
>sp|O66473|SPEE1_AQUAE Spermidine synthase 1 OS=Aquifex aeolicus (strain VF5) GN=speE1
PE=3 SV=1
Length = 280
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
EFG LILDG++Q E EF Y E +A +PL +HPNP+ VLI +GG
Sbjct: 42 EFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLI--IGG 86
>sp|Q9SEH7|PMT2_TOBAC Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3
SV=1
Length = 353
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 29/45 (64%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
+G L LDG IQ TE F Y+EMI LPL S PNPKKVLI G
Sbjct: 105 YGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGG 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,241,479
Number of Sequences: 539616
Number of extensions: 1099743
Number of successful extensions: 2208
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2001
Number of HSP's gapped (non-prelim): 212
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)