Query psy4594
Match_columns 82
No_of_seqs 116 out of 728
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00536 speE spermidine synth 100.0 4.6E-35 1E-39 217.6 4.3 72 8-80 18-90 (262)
2 PF01564 Spermine_synth: Sperm 99.9 2.8E-28 6E-33 178.2 3.1 73 8-80 21-94 (246)
3 PLN02366 spermidine synthase 99.9 1.6E-27 3.5E-32 179.8 4.6 74 7-80 35-109 (308)
4 COG0421 SpeE Spermidine syntha 99.9 2.5E-27 5.5E-32 177.6 3.5 74 7-80 20-94 (282)
5 PRK01581 speE spermidine synth 99.9 2.6E-27 5.7E-32 183.7 3.3 71 8-80 97-168 (374)
6 PLN02823 spermine synthase 99.9 7.1E-27 1.5E-31 178.2 4.0 75 6-80 46-121 (336)
7 PRK00811 spermidine synthase; 99.9 1.1E-26 2.4E-31 172.0 4.7 75 6-80 19-94 (283)
8 TIGR00417 speE spermidine synt 99.9 2.7E-24 5.9E-29 157.5 4.4 73 8-80 17-90 (270)
9 COG4262 Predicted spermidine s 99.9 2.4E-24 5.1E-29 169.3 4.3 76 5-80 232-307 (508)
10 KOG1562|consensus 99.9 9.8E-23 2.1E-27 155.7 1.9 75 6-80 64-139 (337)
11 PRK03612 spermidine synthase; 99.8 2.9E-21 6.3E-26 153.3 4.5 75 6-80 237-315 (521)
12 PRK04457 spermidine synthase; 97.9 7.4E-06 1.6E-10 60.4 2.5 70 9-80 7-84 (262)
13 KOG1562|consensus 97.6 2.8E-05 6.2E-10 60.3 1.2 68 5-79 122-189 (337)
14 PRK06719 precorrin-2 dehydroge 93.0 0.059 1.3E-06 37.1 1.6 25 51-75 1-25 (157)
15 PRK05562 precorrin-2 dehydroge 91.7 0.085 1.8E-06 38.8 1.2 33 43-75 5-37 (223)
16 KOG3851|consensus 89.6 0.19 4.1E-06 40.3 1.5 31 43-77 23-53 (446)
17 PF12242 Eno-Rase_NADH_b: NAD( 88.1 0.27 5.9E-06 31.3 1.2 14 61-74 37-50 (78)
18 COG1648 CysG Siroheme synthase 87.3 0.33 7.2E-06 35.2 1.4 22 54-75 3-24 (210)
19 PRK06718 precorrin-2 dehydroge 84.8 0.51 1.1E-05 33.6 1.3 21 56-76 3-23 (202)
20 PRK10637 cysG siroheme synthas 84.6 0.52 1.1E-05 37.3 1.4 22 53-74 2-23 (457)
21 TIGR01470 cysG_Nterm siroheme 82.4 0.79 1.7E-05 32.8 1.5 20 56-75 2-21 (205)
22 PF13738 Pyr_redox_3: Pyridine 73.2 3.1 6.7E-05 27.9 2.2 14 62-75 166-179 (203)
23 PRK13977 myosin-cross-reactive 70.7 1.9 4.2E-05 35.9 0.9 28 50-77 9-36 (576)
24 TIGR03140 AhpF alkyl hydropero 69.0 3.8 8.3E-05 32.6 2.2 18 60-77 209-226 (515)
25 PRK11749 dihydropyrimidine deh 62.9 4 8.6E-05 31.8 1.2 17 60-76 137-153 (457)
26 COG3007 Uncharacterized paraqu 61.3 5.6 0.00012 31.7 1.8 13 62-74 40-52 (398)
27 KOG4714|consensus 61.1 6.7 0.00015 30.6 2.1 22 55-76 183-204 (319)
28 PRK07364 2-octaprenyl-6-methox 60.8 2.9 6.2E-05 31.4 0.1 17 61-77 16-32 (415)
29 PLN02172 flavin-containing mon 60.6 3.3 7.2E-05 32.9 0.4 16 62-77 9-24 (461)
30 PF13434 K_oxygenase: L-lysine 58.3 5.1 0.00011 30.6 1.0 14 60-73 187-200 (341)
31 TIGR01316 gltA glutamate synth 57.8 6.5 0.00014 30.8 1.6 17 60-76 130-146 (449)
32 COG3634 AhpF Alkyl hydroperoxi 56.1 7.8 0.00017 31.7 1.8 25 52-76 341-367 (520)
33 PF01488 Shikimate_DH: Shikima 55.2 9 0.00019 25.2 1.7 13 61-73 10-22 (135)
34 PTZ00318 NADH dehydrogenase-li 54.9 5.1 0.00011 30.9 0.6 15 62-76 9-23 (424)
35 COG2247 LytB Putative cell wal 54.4 7.9 0.00017 30.6 1.5 24 47-72 62-85 (337)
36 PRK12831 putative oxidoreducta 54.2 7.9 0.00017 30.6 1.6 15 61-75 279-293 (464)
37 PRK06567 putative bifunctional 53.8 7.4 0.00016 34.7 1.4 17 60-76 380-396 (1028)
38 COG2072 TrkA Predicted flavopr 52.7 34 0.00075 27.0 4.9 27 49-75 158-187 (443)
39 PLN02852 ferredoxin-NADP+ redu 52.5 6.4 0.00014 31.9 0.8 16 61-76 24-39 (491)
40 PRK12831 putative oxidoreducta 51.3 9 0.00019 30.3 1.4 15 61-75 138-152 (464)
41 PRK01438 murD UDP-N-acetylmura 50.3 12 0.00025 29.3 1.9 14 62-75 15-28 (480)
42 TIGR01292 TRX_reduct thioredox 50.2 7.6 0.00016 27.3 0.8 14 62-75 140-153 (300)
43 PF00891 Methyltransf_2: O-met 50.2 5.4 0.00012 28.2 0.0 19 61-79 99-117 (241)
44 PRK12770 putative glutamate sy 50.1 12 0.00026 28.0 1.9 16 61-76 16-31 (352)
45 PRK12810 gltD glutamate syntha 49.3 10 0.00022 29.8 1.5 16 61-76 141-156 (471)
46 TIGR01423 trypano_reduc trypan 49.2 13 0.00028 29.7 2.1 15 61-75 185-199 (486)
47 PTZ00188 adrenodoxin reductase 48.6 9.3 0.0002 31.5 1.2 16 61-76 37-52 (506)
48 PRK14968 putative methyltransf 48.5 6.3 0.00014 26.1 0.1 19 61-79 22-40 (188)
49 cd07367 CarBb CarBb is the B s 48.4 13 0.00027 27.6 1.8 12 62-73 169-180 (268)
50 PRK09288 purT phosphoribosylgl 47.6 16 0.00035 27.5 2.2 14 60-73 9-22 (395)
51 PRK06996 hypothetical protein; 47.5 6.8 0.00015 29.7 0.2 17 60-76 8-24 (398)
52 PRK15317 alkyl hydroperoxide r 47.0 6.9 0.00015 31.1 0.2 17 61-77 209-225 (517)
53 PLN02927 antheraxanthin epoxid 46.9 6.3 0.00014 33.3 -0.1 17 61-77 79-95 (668)
54 KOG0042|consensus 46.8 11 0.00023 32.3 1.2 14 64-77 68-81 (680)
55 cd03348 pro_PheOH Prokaryotic 46.7 6.8 0.00015 29.2 0.1 18 45-62 109-126 (228)
56 TIGR01267 Phe4hydrox_mono phen 46.3 8.5 0.00019 29.1 0.6 18 45-62 109-126 (248)
57 PRK13984 putative oxidoreducta 45.8 13 0.00027 30.1 1.5 12 62-73 417-428 (604)
58 PF00743 FMO-like: Flavin-bind 45.5 14 0.0003 30.1 1.7 48 28-75 139-195 (531)
59 TIGR00438 rrmJ cell division p 45.5 8.1 0.00018 26.4 0.3 18 61-78 31-48 (188)
60 PRK12809 putative oxidoreducta 45.3 13 0.00027 30.6 1.5 16 61-76 308-323 (639)
61 PRK06484 short chain dehydroge 45.0 32 0.00069 26.7 3.6 45 27-74 236-280 (520)
62 cd07373 2A5CPDO_A The alpha su 45.0 14 0.00031 27.3 1.6 13 62-74 165-177 (271)
63 PRK08132 FAD-dependent oxidore 44.9 7.8 0.00017 30.8 0.2 16 61-76 21-36 (547)
64 TIGR01318 gltD_gamma_fam gluta 44.9 15 0.00033 29.0 1.8 16 61-76 139-154 (467)
65 TIGR03315 Se_ygfK putative sel 44.8 7.6 0.00017 34.4 0.1 16 61-76 535-550 (1012)
66 cd00361 arom_aa_hydroxylase Bi 43.9 8.8 0.00019 28.5 0.3 18 45-62 103-120 (221)
67 PLN02172 flavin-containing mon 43.9 13 0.00028 29.6 1.3 14 62-75 203-216 (461)
68 PRK12769 putative oxidoreducta 43.5 8.8 0.00019 31.5 0.3 16 61-76 325-340 (654)
69 PRK08317 hypothetical protein; 43.5 10 0.00023 25.6 0.6 20 61-80 18-37 (241)
70 KOG0399|consensus 43.4 16 0.00035 34.2 1.9 16 61-76 1922-1937(2142)
71 KOG1324|consensus 43.1 23 0.0005 26.0 2.4 12 62-73 109-120 (190)
72 PRK09134 short chain dehydroge 42.8 21 0.00045 24.9 2.1 14 61-74 7-20 (258)
73 PF00781 DAGK_cat: Diacylglyce 42.5 9.2 0.0002 24.6 0.2 15 62-76 53-67 (130)
74 COG0493 GltD NADPH-dependent g 42.4 15 0.00033 29.5 1.5 12 64-75 263-274 (457)
75 PRK12779 putative bifunctional 42.3 15 0.00033 32.1 1.6 14 62-75 446-459 (944)
76 PRK14966 unknown domain/N5-glu 42.3 24 0.00052 28.5 2.6 61 14-78 207-267 (423)
77 PRK06115 dihydrolipoamide dehy 42.1 19 0.0004 28.3 1.9 15 61-75 172-186 (466)
78 cd07371 2A5CPDO_AB The alpha a 42.0 16 0.00034 27.0 1.4 12 62-73 162-173 (268)
79 KOG4545|consensus 41.5 8.4 0.00018 28.2 -0.1 30 48-77 41-70 (197)
80 PRK05249 soluble pyridine nucl 41.4 17 0.00037 28.0 1.6 15 61-75 173-187 (461)
81 PLN02576 protoporphyrinogen ox 41.0 17 0.00038 28.1 1.6 16 61-76 10-25 (496)
82 PRK12548 shikimate 5-dehydroge 40.9 11 0.00024 28.0 0.5 40 35-78 100-139 (289)
83 PRK06467 dihydrolipoamide dehy 40.7 19 0.00042 28.3 1.8 14 61-74 172-185 (471)
84 PRK07251 pyridine nucleotide-d 40.4 19 0.0004 27.7 1.7 15 61-75 155-169 (438)
85 PRK11913 phhA phenylalanine 4- 40.4 11 0.00024 28.9 0.4 18 45-62 125-142 (275)
86 TIGR01350 lipoamide_DH dihydro 40.2 12 0.00027 28.7 0.7 15 61-75 168-182 (461)
87 PRK13255 thiopurine S-methyltr 39.8 15 0.00033 26.3 1.0 16 62-77 37-52 (218)
88 COG0492 TrxB Thioredoxin reduc 39.8 18 0.00039 27.5 1.5 15 61-75 141-155 (305)
89 KOG0405|consensus 39.7 16 0.00035 29.9 1.2 17 61-77 18-34 (478)
90 PF01262 AlaDh_PNT_C: Alanine 39.6 19 0.00042 24.4 1.5 13 62-74 19-31 (168)
91 PRK12778 putative bifunctional 39.4 17 0.00038 30.3 1.5 17 60-76 428-444 (752)
92 PRK01544 bifunctional N5-gluta 39.3 9.9 0.00021 30.7 -0.0 61 14-78 68-154 (506)
93 PRK09853 putative selenate red 39.1 14 0.0003 33.0 0.8 16 61-76 537-552 (1019)
94 PRK05976 dihydrolipoamide dehy 39.0 12 0.00027 29.1 0.5 15 61-75 178-192 (472)
95 TIGR01317 GOGAT_sm_gam glutama 38.7 25 0.00053 28.0 2.1 15 62-76 142-156 (485)
96 PRK06292 dihydrolipoamide dehy 38.7 20 0.00043 27.7 1.6 15 61-75 167-181 (460)
97 COG1707 ACT domain-containing 38.4 20 0.00044 26.4 1.5 12 62-73 82-93 (218)
98 cd01080 NAD_bind_m-THF_DH_Cycl 38.3 22 0.00047 24.8 1.6 12 62-73 43-54 (168)
99 cd07359 PCA_45_Doxase_B_like S 38.3 22 0.00048 25.9 1.7 14 61-74 171-184 (271)
100 TIGR01421 gluta_reduc_1 glutat 38.2 20 0.00044 28.0 1.6 14 62-75 165-178 (450)
101 PRK10262 thioredoxin reductase 37.9 21 0.00046 26.1 1.5 14 62-75 145-158 (321)
102 PRK12775 putative trifunctiona 37.8 19 0.0004 31.7 1.4 14 62-75 570-583 (1006)
103 COG1249 Lpd Pyruvate/2-oxoglut 37.8 20 0.00044 28.8 1.6 13 61-73 171-183 (454)
104 KOG1730|consensus 37.7 19 0.00041 26.6 1.2 37 39-77 61-97 (206)
105 PRK12771 putative glutamate sy 37.7 15 0.00032 29.6 0.8 16 61-76 135-150 (564)
106 cd03345 eu_TyrOH Eukaryotic ty 37.6 13 0.00028 28.9 0.4 18 45-62 162-179 (298)
107 PRK06370 mercuric reductase; V 37.6 21 0.00046 27.7 1.6 15 61-75 169-183 (463)
108 PRK12778 putative bifunctional 37.5 19 0.00042 30.1 1.4 14 62-75 569-582 (752)
109 cd03346 eu_TrpOH Eukaryotic tr 36.9 13 0.00029 28.7 0.4 18 45-62 163-180 (287)
110 PRK09564 coenzyme A disulfide 36.6 15 0.00033 28.0 0.7 15 61-75 147-161 (444)
111 PRK13748 putative mercuric red 36.6 24 0.00051 28.0 1.7 14 61-74 268-281 (561)
112 TIGR01424 gluta_reduc_2 glutat 36.4 14 0.0003 28.6 0.4 15 61-75 164-178 (446)
113 PRK07818 dihydrolipoamide dehy 35.8 23 0.0005 27.6 1.5 15 61-75 170-184 (466)
114 smart00046 DAGKc Diacylglycero 35.7 22 0.00048 23.0 1.2 13 64-76 50-62 (124)
115 PRK07846 mycothione reductase; 35.6 23 0.00051 27.7 1.6 14 62-75 165-178 (451)
116 cd07368 PhnC_Bs_like PhnC is a 35.6 26 0.00055 26.2 1.7 13 61-73 177-189 (277)
117 TIGR03385 CoA_CoA_reduc CoA-di 35.5 25 0.00054 26.8 1.7 15 61-75 135-149 (427)
118 PRK15451 tRNA cmo(5)U34 methyl 35.5 12 0.00026 26.8 -0.0 18 61-78 55-72 (247)
119 PLN02676 polyamine oxidase 35.5 12 0.00025 29.9 -0.2 19 58-76 21-39 (487)
120 PRK12814 putative NADPH-depend 35.3 22 0.00049 29.4 1.5 16 61-76 191-206 (652)
121 PRK13512 coenzyme A disulfide 35.1 24 0.00053 27.3 1.6 14 62-75 147-160 (438)
122 COG1148 HdrA Heterodisulfide r 34.8 20 0.00044 30.3 1.1 14 63-76 124-137 (622)
123 PRK06912 acoL dihydrolipoamide 34.7 23 0.00049 27.6 1.3 15 61-75 168-182 (458)
124 TIGR02053 MerA mercuric reduct 34.6 26 0.00056 27.1 1.7 15 61-75 164-178 (463)
125 cd03347 eu_PheOH Eukaryotic ph 34.6 15 0.00034 28.6 0.4 18 45-62 163-180 (306)
126 PRK06116 glutathione reductase 34.4 25 0.00055 27.1 1.6 15 61-75 165-179 (450)
127 PRK12779 putative bifunctional 34.4 15 0.00032 32.1 0.3 18 60-77 303-320 (944)
128 PRK06327 dihydrolipoamide dehy 34.1 16 0.00035 28.6 0.5 15 61-75 181-195 (475)
129 COG0061 nadF NAD kinase [Coenz 34.0 17 0.00036 27.2 0.5 18 61-78 53-70 (281)
130 PRK09754 phenylpropionate diox 34.0 26 0.00057 26.6 1.6 13 62-74 143-155 (396)
131 cd07320 Extradiol_Dioxygenase_ 33.8 26 0.00055 25.1 1.4 13 62-74 157-169 (260)
132 PRK04965 NADH:flavorubredoxin 33.8 17 0.00037 27.3 0.5 14 62-75 140-153 (377)
133 PRK13358 protocatechuate 4,5-d 33.6 30 0.00065 25.3 1.8 13 62-74 169-181 (269)
134 COG3186 Phenylalanine-4-hydrox 33.5 18 0.00039 28.0 0.6 17 46-62 141-157 (291)
135 PRK14727 putative mercuric red 33.3 22 0.00049 27.9 1.1 17 60-76 13-29 (479)
136 cd07364 PCA_45_Dioxygenase_B S 33.3 28 0.00061 26.1 1.6 13 61-73 178-190 (277)
137 TIGR02072 BioC biotin biosynth 32.9 16 0.00034 24.9 0.2 18 61-78 33-50 (240)
138 PRK06416 dihydrolipoamide dehy 32.9 28 0.0006 26.9 1.6 15 61-75 170-184 (462)
139 PF13489 Methyltransf_23: Meth 32.9 17 0.00036 23.1 0.3 20 60-79 20-39 (161)
140 PRK11873 arsM arsenite S-adeno 32.8 38 0.00082 24.3 2.2 16 61-76 76-91 (272)
141 PRK14055 aromatic amino acid h 32.7 16 0.00035 29.1 0.3 18 45-62 196-213 (362)
142 TIGR02469 CbiT precorrin-6Y C5 32.7 17 0.00037 22.1 0.3 18 62-79 19-36 (124)
143 TIGR01269 Tyr_3_monoox tyrosin 32.5 18 0.00039 29.7 0.5 18 45-62 286-303 (457)
144 TIGR03143 AhpF_homolog putativ 32.5 27 0.00059 28.2 1.5 14 62-75 142-155 (555)
145 PRK00216 ubiE ubiquinone/menaq 32.4 16 0.00035 24.9 0.2 19 61-79 50-68 (239)
146 TIGR03329 Phn_aa_oxid putative 32.3 28 0.0006 27.1 1.5 13 61-73 22-34 (460)
147 TIGR03452 mycothione_red mycot 32.2 27 0.00058 27.3 1.4 14 62-75 168-181 (452)
148 cd07366 3MGA_Dioxygenase Subun 31.9 29 0.00063 26.9 1.5 14 61-74 233-246 (328)
149 PLN00093 geranylgeranyl diphos 31.9 14 0.00031 29.2 -0.2 14 64-77 40-53 (450)
150 PLN02735 carbamoyl-phosphate s 31.7 36 0.00079 30.3 2.2 15 62-76 22-36 (1102)
151 cd07370 HPCD The Class III ext 31.7 29 0.00063 25.7 1.5 13 62-74 168-180 (280)
152 COG3634 AhpF Alkyl hydroperoxi 31.2 28 0.00061 28.6 1.4 19 60-78 208-226 (520)
153 KOG1336|consensus 30.9 26 0.00056 29.0 1.1 17 61-77 72-88 (478)
154 cd07949 PCA_45_Doxase_B_like_1 30.9 32 0.00068 25.8 1.5 13 61-73 177-189 (276)
155 PF06201 PITH: PITH domain; I 30.9 14 0.0003 25.5 -0.4 32 49-80 45-77 (152)
156 cd07363 45_DOPA_Dioxygenase Th 30.7 28 0.00062 25.4 1.2 11 63-73 150-160 (253)
157 PRK14103 trans-aconitate 2-met 30.7 20 0.00043 25.6 0.4 20 61-80 28-47 (255)
158 PF11312 DUF3115: Protein of u 30.7 29 0.00062 27.2 1.3 12 64-75 88-99 (315)
159 TIGR03840 TMPT_Se_Te thiopurin 30.7 37 0.0008 24.2 1.8 17 61-77 33-49 (213)
160 cd07952 ED_3B_like Uncharacter 30.5 30 0.00066 25.2 1.4 13 62-74 158-170 (256)
161 PRK12549 shikimate 5-dehydroge 30.4 34 0.00074 25.5 1.6 37 35-73 101-137 (284)
162 TIGR01268 Phe4hydrox_tetr phen 30.3 20 0.00043 29.2 0.4 18 45-62 265-282 (436)
163 PRK00258 aroE shikimate 5-dehy 30.3 35 0.00075 25.0 1.6 40 35-78 96-136 (278)
164 PF00503 G-alpha: G-protein al 30.3 36 0.00078 26.1 1.8 14 62-75 57-70 (389)
165 PRK00676 hemA glutamyl-tRNA re 30.1 30 0.00065 27.1 1.3 15 61-75 172-186 (338)
166 PF05673 DUF815: Protein of un 30.1 51 0.0011 24.9 2.5 43 26-70 104-146 (249)
167 PRK13364 protocatechuate 4,5-d 30.0 33 0.00071 25.9 1.5 13 61-73 177-189 (278)
168 TIGR01270 Trp_5_monoox tryptop 29.9 21 0.00045 29.4 0.4 18 45-62 292-309 (464)
169 PRK14694 putative mercuric red 29.8 34 0.00073 26.7 1.6 14 61-74 176-189 (468)
170 KOG0012|consensus 29.7 31 0.00066 27.8 1.3 17 62-82 336-352 (380)
171 PF08545 ACP_syn_III: 3-Oxoacy 29.6 30 0.00066 20.6 1.1 15 57-71 20-34 (80)
172 PF07942 N2227: N2227-like pro 29.6 21 0.00046 27.0 0.4 22 59-80 53-74 (270)
173 KOG1201|consensus 29.5 37 0.00081 26.4 1.7 14 62-75 37-50 (300)
174 TIGR03169 Nterm_to_SelD pyridi 29.5 24 0.00053 26.1 0.7 15 61-75 143-157 (364)
175 KOG2495|consensus 29.3 29 0.00063 28.8 1.2 18 59-76 51-68 (491)
176 PTZ00052 thioredoxin reductase 29.3 35 0.00077 27.1 1.6 14 61-74 180-193 (499)
177 PLN02507 glutathione reductase 29.2 34 0.00073 27.3 1.5 15 61-75 201-215 (499)
178 PRK06935 2-deoxy-D-gluconate 3 29.2 39 0.00084 23.5 1.7 13 62-74 14-26 (258)
179 PRK06141 ornithine cyclodeamin 29.2 40 0.00088 25.3 1.9 48 22-73 87-135 (314)
180 cd07372 2A5CPDO_B The beta sub 29.1 35 0.00076 25.9 1.5 14 62-75 179-192 (294)
181 PRK11036 putative S-adenosyl-L 28.9 21 0.00045 25.6 0.3 19 61-79 43-61 (255)
182 TIGR03534 RF_mod_PrmC protein- 28.9 23 0.00049 24.6 0.5 58 17-78 45-103 (251)
183 cd01065 NAD_bind_Shikimate_DH 28.8 47 0.001 21.3 1.9 12 61-72 17-28 (155)
184 TIGR03736 PRTRC_ThiF PRTRC sys 28.7 32 0.0007 25.5 1.3 13 61-73 9-21 (244)
185 KOG1322|consensus 28.5 44 0.00096 26.8 2.0 19 62-80 8-26 (371)
186 PRK08010 pyridine nucleotide-d 28.4 38 0.00083 26.0 1.7 15 61-75 156-170 (441)
187 cd07950 Gallate_Doxase_N The N 28.4 37 0.00081 25.4 1.5 13 61-73 178-190 (277)
188 PRK13659 hypothetical protein; 28.4 25 0.00054 23.5 0.5 15 65-79 21-35 (103)
189 PRK10258 biotin biosynthesis p 28.4 24 0.00051 25.0 0.5 19 61-79 41-59 (251)
190 KOG2819|consensus 28.3 76 0.0016 25.7 3.3 35 5-39 39-74 (413)
191 PRK09853 putative selenate red 28.3 36 0.00079 30.4 1.7 15 61-75 666-680 (1019)
192 PRK04176 ribulose-1,5-biphosph 28.2 16 0.00034 26.8 -0.5 13 64-76 26-38 (257)
193 PF00186 DHFR_1: Dihydrofolate 28.0 51 0.0011 22.8 2.1 10 63-72 91-100 (161)
194 cd07362 HPCD_like Class III ex 28.0 32 0.0007 25.5 1.1 11 63-73 168-178 (272)
195 PRK12749 quinate/shikimate deh 27.9 41 0.00088 25.2 1.7 40 35-78 98-137 (288)
196 TIGR01809 Shik-DH-AROM shikima 27.9 1.1E+02 0.0024 22.6 4.0 39 35-73 97-135 (282)
197 PLN02546 glutathione reductase 27.8 25 0.00054 28.8 0.5 15 61-75 250-264 (558)
198 PRK11207 tellurite resistance 27.7 21 0.00045 24.8 0.1 18 62-79 30-47 (197)
199 PRK14027 quinate/shikimate deh 27.5 41 0.00089 25.2 1.6 40 35-78 101-140 (283)
200 PTZ00058 glutathione reductase 27.5 38 0.00082 27.8 1.5 14 62-75 236-249 (561)
201 PRK13365 protocatechuate 4,5-d 27.4 40 0.00086 25.3 1.5 13 61-73 178-190 (279)
202 PRK06183 mhpA 3-(3-hydroxyphen 27.4 21 0.00045 28.4 0.0 17 61-77 8-24 (538)
203 PRK07845 flavoprotein disulfid 27.4 39 0.00085 26.4 1.6 13 62-74 176-188 (466)
204 PRK08085 gluconate 5-dehydroge 27.2 45 0.00097 23.0 1.7 13 62-74 8-20 (254)
205 PLN02697 lycopene epsilon cycl 27.1 24 0.00052 28.9 0.3 16 61-76 106-121 (529)
206 TIGR01438 TGR thioredoxin and 27.1 37 0.0008 27.0 1.4 15 61-75 178-192 (484)
207 COG0169 AroE Shikimate 5-dehyd 27.1 1.1E+02 0.0024 23.2 3.9 42 31-72 93-135 (283)
208 TIGR02298 HpaD_Fe 3,4-dihydrox 27.0 35 0.00076 25.5 1.2 12 62-73 171-182 (282)
209 COG1086 Predicted nucleoside-d 26.8 33 0.00072 29.0 1.1 18 59-76 112-129 (588)
210 TIGR01373 soxB sarcosine oxida 26.7 39 0.00084 25.4 1.4 12 64-75 31-42 (407)
211 PRK12775 putative trifunctiona 26.6 25 0.00053 31.0 0.3 16 61-76 428-443 (1006)
212 PRK13054 lipid kinase; Reviewe 26.5 37 0.0008 25.0 1.2 12 64-75 57-68 (300)
213 PLN02464 glycerol-3-phosphate 26.4 36 0.00079 28.2 1.3 15 62-76 70-84 (627)
214 PRK08125 bifunctional UDP-gluc 26.4 39 0.00085 27.8 1.4 20 52-71 304-323 (660)
215 PRK13366 protocatechuate 4,5-d 26.3 44 0.00095 25.3 1.6 13 61-73 178-190 (284)
216 PRK12829 short chain dehydroge 26.3 50 0.0011 22.7 1.8 17 61-78 9-25 (264)
217 cd05191 NAD_bind_amino_acid_DH 26.2 53 0.0012 19.7 1.7 15 61-75 21-35 (86)
218 KOG1335|consensus 26.1 34 0.00074 28.3 1.0 16 62-77 38-53 (506)
219 PLN02520 bifunctional 3-dehydr 26.1 22 0.00048 28.9 -0.0 17 61-79 377-393 (529)
220 PLN02487 zeta-carotene desatur 26.0 39 0.00085 27.9 1.4 15 62-76 74-88 (569)
221 PRK08618 ornithine cyclodeamin 25.8 49 0.0011 24.9 1.8 48 22-73 89-137 (325)
222 PRK00861 putative lipid kinase 25.7 41 0.00088 24.7 1.3 13 64-76 58-70 (300)
223 cd06194 FNR_N-term_Iron_sulfur 25.7 45 0.00098 22.9 1.5 15 62-76 96-110 (222)
224 PF00351 Biopterin_H: Biopteri 25.5 17 0.00037 28.6 -0.7 17 45-61 163-179 (332)
225 PLN02612 phytoene desaturase 25.4 31 0.00067 28.1 0.7 15 62-76 92-106 (567)
226 PRK07060 short chain dehydroge 25.2 59 0.0013 22.1 2.0 13 62-74 8-20 (245)
227 PRK07580 Mg-protoporphyrin IX 25.2 30 0.00066 23.7 0.5 19 61-79 62-80 (230)
228 PRK09328 N5-glutamine S-adenos 25.2 42 0.00092 23.8 1.3 58 17-78 65-124 (275)
229 PRK07340 ornithine cyclodeamin 24.9 53 0.0011 24.6 1.8 15 59-73 121-135 (304)
230 cd06212 monooxygenase_like The 24.9 48 0.001 23.0 1.5 14 63-76 103-116 (232)
231 cd06186 NOX_Duox_like_FAD_NADP 24.9 44 0.00095 22.7 1.3 15 62-76 105-119 (210)
232 KOG3974|consensus 24.7 34 0.00074 26.7 0.8 50 25-75 27-113 (306)
233 PRK04148 hypothetical protein; 24.6 28 0.00061 23.8 0.3 15 61-75 15-29 (134)
234 KOG4469|consensus 24.6 91 0.002 24.2 3.1 24 29-52 96-119 (391)
235 KOG1367|consensus 24.6 23 0.00051 28.4 -0.1 48 30-78 330-378 (416)
236 cd06195 FNR1 Ferredoxin-NADP+ 24.4 51 0.0011 23.0 1.6 15 62-76 100-114 (241)
237 PRK13055 putative lipid kinase 24.4 44 0.00095 25.2 1.3 11 65-75 61-71 (334)
238 PRK08159 enoyl-(acyl carrier p 24.4 30 0.00066 24.8 0.4 17 62-78 9-26 (272)
239 PF14633 SH2_2: SH2 domain; PD 24.3 65 0.0014 23.8 2.2 32 15-47 81-118 (220)
240 TIGR00477 tehB tellurite resis 24.2 27 0.00058 24.2 0.1 17 62-78 30-46 (195)
241 PRK13363 protocatechuate 4,5-d 24.2 43 0.00093 26.1 1.3 13 62-74 238-250 (335)
242 cd00327 cond_enzymes Condensin 24.2 69 0.0015 22.1 2.2 19 59-77 83-106 (254)
243 PRK07523 gluconate 5-dehydroge 24.1 54 0.0012 22.6 1.7 11 62-72 9-19 (255)
244 TIGR01934 MenG_MenH_UbiE ubiqu 24.1 36 0.00079 22.9 0.8 19 61-79 38-56 (223)
245 PRK08294 phenol 2-monooxygenas 24.0 26 0.00057 29.0 0.1 17 61-77 30-46 (634)
246 PRK00517 prmA ribosomal protei 23.8 81 0.0017 22.6 2.6 47 30-77 88-134 (250)
247 PLN02529 lysine-specific histo 23.8 24 0.00052 30.2 -0.2 16 61-76 158-173 (738)
248 PRK10124 putative UDP-glucose 23.7 39 0.00085 26.9 0.9 15 62-76 142-156 (463)
249 cd05560 Xcc1710_like Xcc1710_l 23.5 44 0.00096 21.6 1.0 15 61-76 51-65 (109)
250 PRK11705 cyclopropane fatty ac 23.5 29 0.00063 27.0 0.2 19 61-79 166-184 (383)
251 KOG0029|consensus 23.5 31 0.00067 28.1 0.4 18 59-76 11-28 (501)
252 COG1597 LCB5 Sphingosine kinas 23.4 46 0.001 25.0 1.3 14 63-76 58-71 (301)
253 PRK01747 mnmC bifunctional tRN 23.1 43 0.00094 27.5 1.1 12 64-75 261-272 (662)
254 cd06190 T4MO_e_transfer_like T 23.1 47 0.001 23.0 1.2 14 63-76 97-110 (232)
255 cd07951 ED_3B_N_AMMECR1 The N- 23.1 50 0.0011 23.7 1.4 14 63-76 159-172 (256)
256 cd06214 PA_degradation_oxidore 23.1 56 0.0012 22.7 1.6 14 63-76 108-121 (241)
257 PF02900 LigB: Catalytic LigB 22.9 31 0.00068 25.0 0.3 12 63-74 173-184 (272)
258 KOG2104|consensus 22.9 66 0.0014 22.1 1.8 38 15-52 57-102 (126)
259 PRK10628 LigB family dioxygena 22.7 46 0.001 24.9 1.1 12 62-73 138-149 (246)
260 PRK06113 7-alpha-hydroxysteroi 22.7 60 0.0013 22.5 1.7 13 62-74 10-22 (255)
261 KOG4716|consensus 22.7 35 0.00077 28.0 0.5 15 64-78 20-34 (503)
262 cd06185 PDR_like Phthalate dio 22.7 52 0.0011 22.3 1.3 15 62-76 97-111 (211)
263 PF01135 PCMT: Protein-L-isoas 22.6 72 0.0016 22.9 2.1 31 43-76 56-86 (209)
264 PRK13057 putative lipid kinase 22.5 42 0.0009 24.5 0.8 12 65-76 52-63 (287)
265 PF02353 CMAS: Mycolic acid cy 22.5 34 0.00074 25.5 0.4 19 61-79 61-79 (273)
266 cd06217 FNR_iron_sulfur_bindin 22.2 68 0.0015 22.1 1.8 14 63-76 107-120 (235)
267 PRK08291 ectoine utilization p 22.2 67 0.0015 24.2 1.9 15 59-73 128-142 (330)
268 PF13385 Laminin_G_3: Concanav 22.1 2E+02 0.0042 17.5 5.1 46 16-74 85-132 (157)
269 PRK13656 trans-2-enoyl-CoA red 22.1 62 0.0013 26.1 1.8 14 61-74 39-52 (398)
270 cd06215 FNR_iron_sulfur_bindin 22.1 61 0.0013 22.3 1.6 14 63-76 103-116 (231)
271 cd00322 FNR_like Ferredoxin re 22.0 61 0.0013 21.8 1.5 15 62-76 96-110 (223)
272 TIGR00518 alaDH alanine dehydr 22.0 59 0.0013 25.2 1.6 12 62-73 166-177 (370)
273 KOG2844|consensus 21.8 50 0.0011 29.1 1.2 18 59-76 35-52 (856)
274 cd07365 MhpB_like Subunit B of 21.8 55 0.0012 25.1 1.4 12 63-74 166-177 (310)
275 PRK13367 protocatechuate 4,5-d 21.7 56 0.0012 26.5 1.5 13 61-73 178-190 (420)
276 PF05219 DREV: DREV methyltran 21.4 34 0.00075 26.1 0.2 18 62-79 94-111 (265)
277 KOG1399|consensus 21.3 54 0.0012 26.5 1.3 14 62-75 185-198 (448)
278 PF03676 UPF0183: Uncharacteri 21.2 1.4E+02 0.003 23.9 3.6 35 6-40 28-63 (394)
279 PRK12446 undecaprenyldiphospho 21.2 67 0.0014 24.4 1.8 15 61-75 183-197 (352)
280 TIGR00292 thiazole biosynthesi 21.1 26 0.00056 25.7 -0.5 13 64-76 22-34 (254)
281 PRK06027 purU formyltetrahydro 21.1 53 0.0011 24.7 1.2 30 49-78 75-104 (286)
282 PRK07533 enoyl-(acyl carrier p 21.0 41 0.00089 23.7 0.5 12 62-73 9-20 (258)
283 PTZ00383 malate:quinone oxidor 21.0 49 0.0011 26.8 1.0 14 62-75 44-57 (497)
284 PTZ00153 lipoamide dehydrogena 21.0 48 0.001 28.0 1.0 13 65-77 118-130 (659)
285 PRK07775 short chain dehydroge 20.9 77 0.0017 22.4 1.9 13 60-72 7-19 (274)
286 PRK01683 trans-aconitate 2-met 20.9 37 0.00079 24.0 0.3 19 61-79 30-48 (258)
287 TIGR03025 EPS_sugtrans exopoly 20.8 51 0.0011 25.6 1.1 14 62-75 124-137 (445)
288 PF02210 Laminin_G_2: Laminin 20.8 2E+02 0.0044 17.1 3.7 50 16-74 54-103 (128)
289 COG4031 Predicted metal-bindin 20.7 1E+02 0.0022 23.1 2.5 24 4-27 183-207 (227)
290 PRK13372 pcmA protocatechuate 20.7 57 0.0012 26.7 1.3 10 64-73 329-338 (444)
291 KOG1686|consensus 20.6 2E+02 0.0042 20.4 3.8 43 28-71 27-69 (151)
292 PRK13337 putative lipid kinase 20.6 67 0.0014 23.7 1.6 13 64-76 58-70 (304)
293 PRK05867 short chain dehydroge 20.5 72 0.0016 22.1 1.7 13 62-74 8-20 (253)
294 cd01078 NAD_bind_H4MPT_DH NADP 20.5 75 0.0016 21.6 1.7 10 62-71 27-36 (194)
295 PF14737 DUF4470: Domain of un 20.3 81 0.0018 19.7 1.8 15 61-75 22-36 (100)
296 TIGR02992 ectoine_eutC ectoine 20.2 78 0.0017 23.9 1.9 15 59-73 125-139 (326)
297 PRK11914 diacylglycerol kinase 20.2 56 0.0012 24.0 1.1 12 65-76 66-77 (306)
298 cd07369 PydA_Rs_like PydA is a 20.1 57 0.0012 25.3 1.2 12 63-74 179-190 (329)
299 KOG2708|consensus 20.1 57 0.0012 25.4 1.2 13 59-71 251-263 (336)
300 TIGR01369 CPSaseII_lrg carbamo 20.1 71 0.0015 28.2 1.9 13 62-74 553-565 (1050)
301 PRK09424 pntA NAD(P) transhydr 20.0 68 0.0015 26.4 1.7 14 62-75 164-177 (509)
302 COG0262 FolA Dihydrofolate red 20.0 49 0.0011 22.8 0.8 11 63-73 95-105 (167)
No 1
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=4.6e-35 Score=217.60 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=69.3
Q ss_pred ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
.+++++++|+||+| |++|+.||++|+|| .+|+|++|||+|||||||||||+||+|||||||||||||++||+
T Consensus 18 ~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REv 90 (262)
T PRK00536 18 EAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQL 90 (262)
T ss_pred EEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHH
Confidence 47999999999999 99999999999999 66679999999999999999999999999999999999999997
No 2
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.94 E-value=2.8e-28 Score=178.18 Aligned_cols=73 Identities=38% Similarity=0.574 Sum_probs=70.2
Q ss_pred ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
.+++++++|+||+| |++++.||++|+|||.+|++++||++|||+|+|+||+.|++||+|||||||+|+++||+
T Consensus 21 ~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~el 94 (246)
T PF01564_consen 21 EEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTAREL 94 (246)
T ss_dssp EEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHH
T ss_pred EEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhh
Confidence 47899999999999 99999999999999999999999999999999999999999999999999999999986
No 3
>PLN02366 spermidine synthase
Probab=99.94 E-value=1.6e-27 Score=179.79 Aligned_cols=74 Identities=43% Similarity=0.635 Sum_probs=71.7
Q ss_pred cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
-.+++++++|+||+| |++++.+|++|+|||.+|+|+.||++|||||+|+||+.|++|+||||||||+|+++||+
T Consensus 35 v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 35 VEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred EeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence 357999999999999 99999999999999999999999999999999999999999999999999999999986
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.5e-27 Score=177.59 Aligned_cols=74 Identities=41% Similarity=0.631 Sum_probs=71.6
Q ss_pred cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
-.+++++++|+||+| +++++.||++|+|||..|++++|||+||||++|+||++||+||+|||||||||+++||+
T Consensus 20 v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRev 94 (282)
T COG0421 20 VERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREV 94 (282)
T ss_pred eeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHH
Confidence 357899999999999 99999999999999999999999999999999999999999999999999999999996
No 5
>PRK01581 speE spermidine synthase; Validated
Probab=99.93 E-value=2.6e-27 Score=183.69 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=68.2
Q ss_pred ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
.++|++++|+||+| |+++..| .|+|||.+|+|++||++|||+||||||++|++|++|||||||+|+++||+
T Consensus 97 ~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrel 168 (374)
T PRK01581 97 HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREV 168 (374)
T ss_pred cCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH
Confidence 48999999999999 9999977 69999999999999999999999999999999999999999999999886
No 6
>PLN02823 spermine synthase
Probab=99.93 E-value=7.1e-27 Score=178.24 Aligned_cols=75 Identities=35% Similarity=0.502 Sum_probs=72.6
Q ss_pred CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+..++|++++|+||+| |++++.+|++|+|||.+|+++.||++|||+|+||||+.|++||+|||||||+|+++||+
T Consensus 46 ~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~ 121 (336)
T PLN02823 46 AVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREV 121 (336)
T ss_pred EeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHH
Confidence 4679999999999999 99999999999999999999999999999999999999999999999999999999985
No 7
>PRK00811 spermidine synthase; Provisional
Probab=99.93 E-value=1.1e-26 Score=171.96 Aligned_cols=75 Identities=40% Similarity=0.605 Sum_probs=72.4
Q ss_pred CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+..++|++++|+||+| |++++.+|++|+|||.+|++++||++|||+|+|+||++|++|++||+||||+|+++||+
T Consensus 19 ~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~ 94 (283)
T PRK00811 19 RVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREV 94 (283)
T ss_pred eeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHH
Confidence 4578999999999999 99999999999999999999999999999999999999999999999999999999986
No 8
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.90 E-value=2.7e-24 Score=157.54 Aligned_cols=73 Identities=44% Similarity=0.672 Sum_probs=70.8
Q ss_pred ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+++|++++|+||+| |++++.+|++|+|||.+|+++.||++|||||+|+|++.|++|++||+||+|+|++++|+
T Consensus 17 ~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~l 90 (270)
T TIGR00417 17 KKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREV 90 (270)
T ss_pred eeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHH
Confidence 68999999999999 99999999999999999999999999999999999999999999999999999988875
No 9
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.90 E-value=2.4e-24 Score=169.31 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCcccEEEccCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 5 DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 5 ~~~~~vl~~~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
.|.+++|+.+|||||+||+++..-.+.|+|||.+|||++||+.|||.|||||+.+-+..++|||+|||||.++||+
T Consensus 232 lygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRel 307 (508)
T COG4262 232 LYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALREL 307 (508)
T ss_pred hhcCceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHH
Confidence 5889999999999999999998889999999999999999999999999999999999999999999999999997
No 10
>KOG1562|consensus
Probab=99.85 E-value=9.8e-23 Score=155.71 Aligned_cols=75 Identities=45% Similarity=0.652 Sum_probs=72.5
Q ss_pred CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+...+++.++|.||.+ |+++..+|+.|+|||..|++++||+.|.||++|.|+|+|+|||+|||||||||+++||+
T Consensus 64 kVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrev 139 (337)
T KOG1562|consen 64 KVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREV 139 (337)
T ss_pred EeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeee
Confidence 4567899999999999 99999999999999999999999999999999999999999999999999999999997
No 11
>PRK03612 spermidine synthase; Provisional
Probab=99.83 E-value=2.9e-21 Score=153.29 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=70.6
Q ss_pred CcccEEEccCCCCeeE-EEecCC-CC--eEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 6 KKVRVLSYPNKPFYPS-SSNRKE-FG--TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 6 ~~~~vl~~~~s~yQ~i-v~~~~~-~G--~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+.++++++++|+||+| |++++. +| +.|++||.+|+++.||+.|||+++||||+.|++|+|||+||||+|.++||+
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~l 315 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREV 315 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence 5778999999999999 888877 47 999999999999999999999999999999999999999999999999885
No 12
>PRK04457 spermidine synthase; Provisional
Probab=97.90 E-value=7.4e-06 Score=60.39 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=51.2
Q ss_pred cEEEccCCCCeeE-EEecCCCCeEEEEcCc-eeeeccc------cchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594 9 RVLSYPNKPFYPS-SSNRKEFGTALILDGI-IQCTEFD------EFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 9 ~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~-~q~se~d------e~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl 80 (82)
+-+...++.|++| |++... .+.|.+|+. .|+.-.- .+.|+++|.- .+..+++|++||+||+|.|..++.+
T Consensus 7 ~~~~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l 84 (262)
T PRK04457 7 RRLRPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFI 84 (262)
T ss_pred hhhccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHH
Confidence 3455678899999 888877 678888884 5654322 3468887753 4555789999999999999877643
No 13
>KOG1562|consensus
Probab=97.56 E-value=2.8e-05 Score=60.30 Aligned_cols=68 Identities=18% Similarity=0.062 Sum_probs=57.8
Q ss_pred CCcccEEEccCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeee
Q psy4594 5 DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 5 ~~~~~vl~~~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rE 79 (82)
-+++.||...+++||++++..+.+++++.+|...+..+.+ ..|.+.|+- .-+.++|.|+|| ||+..-|
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----gy~~~~v~l~iG-DG~~fl~ 189 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESS-KQYLPTLAC-----GYEGKKVKLLIG-DGFLFLE 189 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHH-HHHhHHHhc-----ccCCCceEEEec-cHHHHHH
Confidence 4688999999999999977779999999999999999999 578776554 267789999999 9986544
No 14
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.98 E-value=0.059 Score=37.08 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.6
Q ss_pred hhcccccccCCCCCEEEEEeCCcce
Q psy4594 51 MIAFLPLCSHPNPKKVLIFTVGGST 75 (82)
Q Consensus 51 ~lvh~~~~~h~~pk~VLIiGGGDGg 75 (82)
||.+.|++..-+.++|||+|||.=+
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va 25 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIA 25 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHH
Confidence 4567888888899999999999643
No 15
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.74 E-value=0.085 Score=38.84 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=26.4
Q ss_pred cccchhhhhhcccccccCCCCCEEEEEeCCcce
Q psy4594 43 FDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGST 75 (82)
Q Consensus 43 ~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg 75 (82)
.-+.+|+|-.=+.|+...-+.++|||||||.=+
T Consensus 5 ~~~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA 37 (223)
T PRK05562 5 NKEDIYNEENKYMFISLLSNKIKVLIIGGGKAA 37 (223)
T ss_pred hhhHHhhccCCEeeeEEECCCCEEEEECCCHHH
Confidence 345678877788888888889999999999744
No 16
>KOG3851|consensus
Probab=89.58 E-value=0.19 Score=40.29 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred cccchhhhhhcccccccCCCCCEEEEEeCCcceee
Q psy4594 43 FDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 43 ~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~ 77 (82)
-..+.|+.+++| ..++.-+|||+|||.||+.
T Consensus 23 ~~~~~~~t~~~~----~~~~h~kvLVvGGGsgGi~ 53 (446)
T KOG3851|consen 23 TGPFQLATMLAR----FARKHFKVLVVGGGSGGIG 53 (446)
T ss_pred cccEeehhhhhh----hcccceEEEEEcCCcchhH
Confidence 345778888888 5567779999999999864
No 17
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.06 E-value=0.27 Score=31.29 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=10.1
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..||+|||||+..|
T Consensus 37 ~GpK~VLViGaStG 50 (78)
T PF12242_consen 37 NGPKKVLVIGASTG 50 (78)
T ss_dssp TS-SEEEEES-SSH
T ss_pred CCCceEEEEecCCc
Confidence 46899999999766
No 18
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.34 E-value=0.33 Score=35.24 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=16.5
Q ss_pred ccccccCCCCCEEEEEeCCcce
Q psy4594 54 FLPLCSHPNPKKVLIFTVGGST 75 (82)
Q Consensus 54 h~~~~~h~~pk~VLIiGGGDGg 75 (82)
..|+..-=+.|+|||+|||+-+
T Consensus 3 ~lPl~~~l~~k~VlvvGgG~va 24 (210)
T COG1648 3 YLPLFLDLEGKKVLVVGGGSVA 24 (210)
T ss_pred ccceEEEcCCCEEEEECCCHHH
Confidence 3455555678999999999854
No 19
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.77 E-value=0.51 Score=33.61 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.3
Q ss_pred ccccCCCCCEEEEEeCCccee
Q psy4594 56 PLCSHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 56 ~~~~h~~pk~VLIiGGGDGg~ 76 (82)
|++..-+.|+|||||||+=+.
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~ 23 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAG 23 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHH
Confidence 555566889999999997543
No 20
>PRK10637 cysG siroheme synthase; Provisional
Probab=84.59 E-value=0.52 Score=37.32 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.3
Q ss_pred cccccccCCCCCEEEEEeCCcc
Q psy4594 53 AFLPLCSHPNPKKVLIFTVGGS 74 (82)
Q Consensus 53 vh~~~~~h~~pk~VLIiGGGDG 74 (82)
.+.|++..-+.|+|||+|||.=
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~v 23 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDV 23 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHH
Confidence 4567877788999999999973
No 21
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=82.45 E-value=0.79 Score=32.76 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=14.7
Q ss_pred ccccCCCCCEEEEEeCCcce
Q psy4594 56 PLCSHPNPKKVLIFTVGGST 75 (82)
Q Consensus 56 ~~~~h~~pk~VLIiGGGDGg 75 (82)
|++..-+.|+|||||||.=+
T Consensus 2 P~~l~l~gk~vlVvGgG~va 21 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVA 21 (205)
T ss_pred CeEEEcCCCeEEEECcCHHH
Confidence 44445567899999999643
No 22
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=73.16 E-value=3.1 Score=27.88 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=9.5
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..|+|+|||||.-+
T Consensus 166 ~~k~V~VVG~G~SA 179 (203)
T PF13738_consen 166 KGKRVVVVGGGNSA 179 (203)
T ss_dssp TTSEEEEE--SHHH
T ss_pred CCCcEEEEcChHHH
Confidence 56999999999743
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=70.74 E-value=1.9 Score=35.91 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=21.9
Q ss_pred hhhcccccccCCCCCEEEEEeCCcceee
Q psy4594 50 EMIAFLPLCSHPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 50 E~lvh~~~~~h~~pk~VLIiGGGDGg~~ 77 (82)
|++++|..-..++.++|.|||||-+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~a~IIGaGiAGLA 36 (576)
T PRK13977 9 EAFARPRKPEGVDNKKAYIIGSGLASLA 36 (576)
T ss_pred HHhccCCCCCCCCCCeEEEECCCHHHHH
Confidence 4567776666677899999999988754
No 24
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=69.00 E-value=3.8 Score=32.59 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.4
Q ss_pred CCCCCEEEEEeCCcceee
Q psy4594 60 HPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~~ 77 (82)
..++.+|+|||||-+|.+
T Consensus 209 ~~~~~dVvIIGgGpAGl~ 226 (515)
T TIGR03140 209 QLDPYDVLVVGGGPAGAA 226 (515)
T ss_pred ccCCCCEEEECCCHHHHH
Confidence 356789999999987753
No 25
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=62.92 E-value=4 Score=31.77 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.6
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
.+.+++|+|||||-+|.
T Consensus 137 ~~~~~~VvIIGgGpaGl 153 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGL 153 (457)
T ss_pred ccCCCcEEEECCCHHHH
Confidence 35789999999997654
No 26
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=61.26 E-value=5.6 Score=31.65 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=11.4
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
-||||||||...|
T Consensus 40 gPKkVLviGaSsG 52 (398)
T COG3007 40 GPKKVLVIGASSG 52 (398)
T ss_pred CCceEEEEecCCc
Confidence 6899999998776
No 27
>KOG4714|consensus
Probab=61.13 E-value=6.7 Score=30.61 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.6
Q ss_pred cccccCCCCCEEEEEeCCccee
Q psy4594 55 LPLCSHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 55 ~~~~~h~~pk~VLIiGGGDGg~ 76 (82)
+++|.||.+.+++.+|++||.+
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~ 204 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIV 204 (319)
T ss_pred hhhhCCcccccEEEEecCCCeE
Confidence 4679999999999999999965
No 28
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=60.76 E-value=2.9 Score=31.41 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=13.5
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
+...+|+|||||-+|.+
T Consensus 16 ~~~~dV~IvGaG~aGl~ 32 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLT 32 (415)
T ss_pred ccccCEEEECcCHHHHH
Confidence 45678999999987754
No 29
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=60.64 E-value=3.3 Score=32.91 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.3
Q ss_pred CCCEEEEEeCCcceee
Q psy4594 62 NPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~ 77 (82)
.+++|+|||+|-.|.+
T Consensus 9 ~~~~VaIIGAG~aGL~ 24 (461)
T PLN02172 9 NSQHVAVIGAGAAGLV 24 (461)
T ss_pred CCCCEEEECCcHHHHH
Confidence 5689999999987754
No 30
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=58.30 E-value=5.1 Score=30.63 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=8.1
Q ss_pred CCCCCEEEEEeCCc
Q psy4594 60 HPNPKKVLIFTVGG 73 (82)
Q Consensus 60 h~~pk~VLIiGGGD 73 (82)
...+++|+|||||-
T Consensus 187 ~~~~~~V~VVGgGQ 200 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQ 200 (341)
T ss_dssp ----EEEEEE-SSH
T ss_pred ccCCCeEEEECCcH
Confidence 45789999999984
No 31
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.81 E-value=6.5 Score=30.77 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.2
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
..+.++|+|||||-+|.
T Consensus 130 ~~~~~~V~IIG~G~aGl 146 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGL 146 (449)
T ss_pred CCCCCEEEEECcCHHHH
Confidence 34678999999996653
No 32
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.10 E-value=7.8 Score=31.73 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=18.6
Q ss_pred hcccccccCC--CCCEEEEEeCCccee
Q psy4594 52 IAFLPLCSHP--NPKKVLIFTVGGSTV 76 (82)
Q Consensus 52 lvh~~~~~h~--~pk~VLIiGGGDGg~ 76 (82)
.+.-|-|-.| +.|||.|||||.-|+
T Consensus 341 VayCPHCDGPLF~gK~VAVIGGGNSGv 367 (520)
T COG3634 341 VAYCPHCDGPLFKGKRVAVIGGGNSGV 367 (520)
T ss_pred eeeCCCCCCcccCCceEEEECCCcchH
Confidence 4444555555 789999999998774
No 33
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.19 E-value=9 Score=25.19 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=10.4
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
-+.++|||||.|.
T Consensus 10 l~~~~vlviGaGg 22 (135)
T PF01488_consen 10 LKGKRVLVIGAGG 22 (135)
T ss_dssp GTTSEEEEESSSH
T ss_pred cCCCEEEEECCHH
Confidence 4678999999853
No 34
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=54.88 E-value=5.1 Score=30.91 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=12.2
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
..++|+|||||-+|+
T Consensus 9 ~~~~vVIvGgG~aGl 23 (424)
T PTZ00318 9 KKPNVVVLGTGWAGA 23 (424)
T ss_pred CCCeEEEECCCHHHH
Confidence 456999999998773
No 35
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=54.41 E-value=7.9 Score=30.58 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=15.8
Q ss_pred hhhhhhcccccccCCCCCEEEEEeCC
Q psy4594 47 SYSEMIAFLPLCSHPNPKKVLIFTVG 72 (82)
Q Consensus 47 ~YhE~lvh~~~~~h~~pk~VLIiGGG 72 (82)
+|+|..-.-- ..-+|+.||||||=
T Consensus 62 ~ynes~~~eI--~~lnpd~VLIIGGp 85 (337)
T COG2247 62 IYNESVLDEI--IELNPDLVLIIGGP 85 (337)
T ss_pred cccHHHHHHH--HhhCCceEEEECCC
Confidence 5666544422 23589999999983
No 36
>PRK12831 putative oxidoreductase; Provisional
Probab=54.22 E-value=7.9 Score=30.56 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.2
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..+|+|+|||||+-+
T Consensus 279 ~~gk~VvVIGgG~va 293 (464)
T PRK12831 279 KVGKKVAVVGGGNVA 293 (464)
T ss_pred cCCCeEEEECCcHHH
Confidence 467999999999743
No 37
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=53.83 E-value=7.4 Score=34.73 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.0
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
.+++|||+|||||-.|.
T Consensus 380 ~~tgKKVaVVGaGPAGL 396 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGF 396 (1028)
T ss_pred CCCCCeEEEECcCHHHH
Confidence 35889999999997663
No 38
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=52.69 E-value=34 Score=27.01 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=18.3
Q ss_pred hhhhcccccccCC---CCCEEEEEeCCcce
Q psy4594 49 SEMIAFLPLCSHP---NPKKVLIFTVGGST 75 (82)
Q Consensus 49 hE~lvh~~~~~h~---~pk~VLIiGGGDGg 75 (82)
+=.++|+.-.-++ ..|||||||+|.-+
T Consensus 158 ~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 158 KGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CceEEchhcCCCccccCCCeEEEECCCccH
Confidence 3336776554444 56999999998754
No 39
>PLN02852 ferredoxin-NADP+ reductase
Probab=52.53 E-value=6.4 Score=31.93 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+.+++|+|||+|-.|.
T Consensus 24 ~~~~~VaIVGaGPAGl 39 (491)
T PLN02852 24 SEPLHVCVVGSGPAGF 39 (491)
T ss_pred CCCCcEEEECccHHHH
Confidence 4678999999997663
No 40
>PRK12831 putative oxidoreductase; Provisional
Probab=51.27 E-value=9 Score=30.26 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.5
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
++.++|+|||||-.|
T Consensus 138 ~~~~~V~IIG~GpAG 152 (464)
T PRK12831 138 KKGKKVAVIGSGPAG 152 (464)
T ss_pred CCCCEEEEECcCHHH
Confidence 477999999999654
No 41
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.25 E-value=12 Score=29.28 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.9
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
+.++|+|||+|--|
T Consensus 15 ~~~~v~viG~G~~G 28 (480)
T PRK01438 15 QGLRVVVAGLGVSG 28 (480)
T ss_pred CCCEEEEECCCHHH
Confidence 46799999998543
No 42
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=50.25 E-value=7.6 Score=27.30 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..++|+|||||..+
T Consensus 140 ~~~~v~ViG~G~~~ 153 (300)
T TIGR01292 140 KNKEVAVVGGGDSA 153 (300)
T ss_pred CCCEEEEECCChHH
Confidence 56899999999754
No 43
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=50.22 E-value=5.4 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=14.6
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
++.++|+=||||.|..+.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~ 117 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIA 117 (241)
T ss_dssp TTSSEEEEET-TTSHHHHH
T ss_pred cCccEEEeccCcchHHHHH
Confidence 4668999999999987654
No 44
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=50.08 E-value=12 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+.+++|+|||||-.|.
T Consensus 16 ~~~~~VvIIG~G~aGl 31 (352)
T PRK12770 16 PTGKKVAIIGAGPAGL 31 (352)
T ss_pred CCCCEEEEECcCHHHH
Confidence 4678999999996653
No 45
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=49.29 E-value=10 Score=29.79 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.6
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+..++|+|||||-.|.
T Consensus 141 ~~~~~VvIIGaGpAGl 156 (471)
T PRK12810 141 RTGKKVAVVGSGPAGL 156 (471)
T ss_pred CCCCEEEEECcCHHHH
Confidence 3568999999996653
No 46
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=49.16 E-value=13 Score=29.66 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-|
T Consensus 185 ~~~~~vvIIGgG~iG 199 (486)
T TIGR01423 185 EPPRRVLTVGGGFIS 199 (486)
T ss_pred cCCCeEEEECCCHHH
Confidence 468999999998643
No 47
>PTZ00188 adrenodoxin reductase; Provisional
Probab=48.64 E-value=9.3 Score=31.51 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=13.3
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
..|++|+|||+|-.|.
T Consensus 37 ~~~krVAIVGaGPAGl 52 (506)
T PTZ00188 37 AKPFKVGIIGAGPSAL 52 (506)
T ss_pred CCCCEEEEECCcHHHH
Confidence 3689999999998764
No 48
>PRK14968 putative methyltransferase; Provisional
Probab=48.50 E-value=6.3 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
.+.++||-+|.|.|..+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~ 40 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIV 40 (188)
T ss_pred cCCCEEEEEccccCHHHHH
Confidence 4668999999999987654
No 49
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=48.37 E-value=13 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=10.7
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
..+||+|||+|+
T Consensus 169 ~d~rV~iiaSGg 180 (268)
T cd07367 169 AGERVAVIAAGG 180 (268)
T ss_pred CCCcEEEEEccc
Confidence 678999999987
No 50
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=47.59 E-value=16 Score=27.50 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.3
Q ss_pred CCCCCEEEEEeCCc
Q psy4594 60 HPNPKKVLIFTVGG 73 (82)
Q Consensus 60 h~~pk~VLIiGGGD 73 (82)
+|..++|||||+|-
T Consensus 9 ~~~~~~ilIiG~g~ 22 (395)
T PRK09288 9 SPSATRVMLLGSGE 22 (395)
T ss_pred CCCCCEEEEECCCH
Confidence 36778999999983
No 51
>PRK06996 hypothetical protein; Provisional
Probab=47.46 E-value=6.8 Score=29.69 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=13.3
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
.++..+|+|+|||-.|.
T Consensus 8 ~~~~~dv~IvGgGpaG~ 24 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGL 24 (398)
T ss_pred cCCCCCEEEECcCHHHH
Confidence 35667899999998664
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=46.99 E-value=6.9 Score=31.13 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.7
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
.+..+|+|||||-+|..
T Consensus 209 ~~~~dvvIIGgGpaGl~ 225 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAA 225 (517)
T ss_pred CCCCCEEEECCCHHHHH
Confidence 45679999999988753
No 53
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=46.94 E-value=6.3 Score=33.35 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.9
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
..+.+|||||||-+|.+
T Consensus 79 ~~~~~VlIVGgGIaGLa 95 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLV 95 (668)
T ss_pred cCCCCEEEECCCHHHHH
Confidence 46689999999988754
No 54
>KOG0042|consensus
Probab=46.77 E-value=11 Score=32.26 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=11.0
Q ss_pred CEEEEEeCCcceee
Q psy4594 64 KKVLIFTVGGSTVQ 77 (82)
Q Consensus 64 k~VLIiGGGDGg~~ 77 (82)
=+|||||||.-|+-
T Consensus 68 fDVLIIGGGAtGaG 81 (680)
T KOG0042|consen 68 FDVLIIGGGATGAG 81 (680)
T ss_pred ccEEEECCCccCcc
Confidence 47999999976653
No 55
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=46.72 E-value=6.8 Score=29.22 Aligned_cols=18 Identities=11% Similarity=0.436 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 109 PDifHe~fGHvPmL~~p~ 126 (228)
T cd03348 109 PDIFHDIFGHVPMLTNPV 126 (228)
T ss_pred cHHHHHHhcccHhhcCHH
Confidence 457899999999999874
No 56
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=46.31 E-value=8.5 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 109 PDifHe~fGH~P~L~~P~ 126 (248)
T TIGR01267 109 PDIFHDIFGHVPLLTNPV 126 (248)
T ss_pred chHHHHHhccccccCChH
Confidence 457899999999999884
No 57
>PRK13984 putative oxidoreductase; Provisional
Probab=45.75 E-value=13 Score=30.15 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=10.7
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
.+++|+|||||+
T Consensus 417 ~~k~VvVIGGG~ 428 (604)
T PRK13984 417 IPRSLVVIGGGN 428 (604)
T ss_pred CCCcEEEECCch
Confidence 369999999998
No 58
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=45.50 E-value=14 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCeEEEEcCceeeeccc------cchhhhhhcccccccCC---CCCEEEEEeCCcce
Q psy4594 28 FGTALILDGIIQCTEFD------EFSYSEMIAFLPLCSHP---NPKKVLIFTVGGST 75 (82)
Q Consensus 28 ~G~~L~LDg~~q~se~d------e~~YhE~lvh~~~~~h~---~pk~VLIiGGGDGg 75 (82)
|..+++.+|.-..-.-- ...+.--+.|-.-...+ +.|||||||+|.-|
T Consensus 139 fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 139 FDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp ECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred eCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 55677777763211110 11233345664443333 56999999999654
No 59
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=45.47 E-value=8.1 Score=26.36 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=14.5
Q ss_pred CCCCEEEEEeCCcceeee
Q psy4594 61 PNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~r 78 (82)
+..++||.||.|.|+.+.
T Consensus 31 ~~g~~VLDiG~GtG~~~~ 48 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQ 48 (188)
T ss_pred CCCCEEEEecCCCCHHHH
Confidence 456899999999998643
No 60
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=45.25 E-value=13 Score=30.65 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.2
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.|+|+|||||-.|.
T Consensus 308 ~~~kkVaIIG~GpaGl 323 (639)
T PRK12809 308 PRSEKVAVIGAGPAGL 323 (639)
T ss_pred CCCCEEEEECcCHHHH
Confidence 4679999999997654
No 61
>PRK06484 short chain dehydrogenase; Validated
Probab=45.00 E-value=32 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=23.1
Q ss_pred CCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcc
Q psy4594 27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74 (82)
Q Consensus 27 ~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDG 74 (82)
..|.++.+||...............-..++ ....|.+||.||+.|
T Consensus 236 ~~G~~~~~~gg~~~~~~~~~~~~~~~~~~~---~~~~k~~lItGas~g 280 (520)
T PRK06484 236 ITGSTLVVDGGWTVYGGSGPASTAQAPSPL---AESPRVVAITGGARG 280 (520)
T ss_pred ccCceEEecCCeeccccccCCCCccCCCCc---ccCCCEEEEECCCcH
Confidence 357788888876543221111111111222 235688888887654
No 62
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=44.98 E-value=14 Score=27.26 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=10.6
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+||||||+|+-
T Consensus 165 ~~~rV~iIgSG~l 177 (271)
T cd07373 165 QNKRVAVVGVGGL 177 (271)
T ss_pred cCCeEEEEEeccc
Confidence 4589999999873
No 63
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=44.92 E-value=7.8 Score=30.81 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+...+|+|||||-.|.
T Consensus 21 ~~~~dVlIVGaGpaGl 36 (547)
T PRK08132 21 PARHPVVVVGAGPVGL 36 (547)
T ss_pred CCcCCEEEECCCHHHH
Confidence 4667899999998765
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.87 E-value=15 Score=28.96 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.++|+|||||-.|.
T Consensus 139 ~~~~~V~IIG~GpaGl 154 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGL 154 (467)
T ss_pred CCCCeEEEECCCHHHH
Confidence 3678999999997654
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=44.78 E-value=7.6 Score=34.42 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
.+.++|+|||||-+|.
T Consensus 535 ~~~kkVaIIGGGPAGL 550 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGL 550 (1012)
T ss_pred CCCCcEEEECCCHHHH
Confidence 3568999999998765
No 66
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=43.92 E-value=8.8 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.515 Sum_probs=15.4
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 103 PDifHe~~GH~P~L~~p~ 120 (221)
T cd00361 103 PDIFHELFGHVPLLADPS 120 (221)
T ss_pred ChhHHHHhccchhhcCHH
Confidence 357899999999999874
No 67
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.87 E-value=13 Score=29.61 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=12.1
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
+.|+|+|||+|.-+
T Consensus 203 ~gk~VvVVG~G~Sg 216 (461)
T PLN02172 203 KNEVVVVIGNFASG 216 (461)
T ss_pred CCCEEEEECCCcCH
Confidence 56899999999865
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.50 E-value=8.8 Score=31.54 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.3
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.++|+|||||-.|.
T Consensus 325 ~~~~~VaIIGaGpAGL 340 (654)
T PRK12769 325 KSDKRVAIIGAGPAGL 340 (654)
T ss_pred cCCCEEEEECCCHHHH
Confidence 3678999999997764
No 69
>PRK08317 hypothetical protein; Provisional
Probab=43.46 E-value=10 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCCCEEEEEeCCcceeeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rEl 80 (82)
..+++||-+|.|.|..+.++
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~ 37 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDAREL 37 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHH
Confidence 45689999999999876553
No 70
>KOG0399|consensus
Probab=43.44 E-value=16 Score=34.22 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.8
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+..|+|.||||||-|+
T Consensus 1922 ~~gkkvivigggdtg~ 1937 (2142)
T KOG0399|consen 1922 AKGKKVIVIGGGDTGT 1937 (2142)
T ss_pred cCCCeEEEECCCCccc
Confidence 5679999999999775
No 71
>KOG1324|consensus
Probab=43.13 E-value=23 Score=25.96 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=10.1
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
.-++|-|||||+
T Consensus 109 ~ve~vfvIGG~~ 120 (190)
T KOG1324|consen 109 SVEMVFVIGGSE 120 (190)
T ss_pred ceeEEEEEcCHH
Confidence 458999999986
No 72
>PRK09134 short chain dehydrogenase; Provisional
Probab=42.80 E-value=21 Score=24.85 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.8
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
...|+|||.|++.|
T Consensus 7 ~~~k~vlItGas~g 20 (258)
T PRK09134 7 AAPRAALVTGAARR 20 (258)
T ss_pred CCCCEEEEeCCCcH
Confidence 46789999998754
No 73
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=42.53 E-value=9.2 Score=24.64 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=10.4
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
...+++|+.||||.+
T Consensus 53 ~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 53 DYPDVIVVVGGDGTL 67 (130)
T ss_dssp TS-SEEEEEESHHHH
T ss_pred cCccEEEEEcCccHH
Confidence 334788888889964
No 74
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=42.44 E-value=15 Score=29.55 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=10.7
Q ss_pred CEEEEEeCCcce
Q psy4594 64 KKVLIFTVGGST 75 (82)
Q Consensus 64 k~VLIiGGGDGg 75 (82)
|+|+||||||-+
T Consensus 263 k~vvVIGgG~Ta 274 (457)
T COG0493 263 KRVVVIGGGDTA 274 (457)
T ss_pred CeEEEECCCCCH
Confidence 999999999854
No 75
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=42.33 E-value=15 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..|+|+|||||+-+
T Consensus 446 ~Gk~VvVIGGG~tA 459 (944)
T PRK12779 446 KGKEVFVIGGGNTA 459 (944)
T ss_pred CCCEEEEECCCHHH
Confidence 46899999999843
No 76
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=42.33 E-value=24 Score=28.50 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=41.3
Q ss_pred cCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 14 PNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 14 ~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
+.-|.|.|+=+.+-+|..+.++-.+-+--.+ +|.++--.+...++.++||=+|.|.|..+.
T Consensus 207 ~gePlqYIlG~~~F~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~Iai 267 (423)
T PRK14966 207 NGEPVAYILGVREFYGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAV 267 (423)
T ss_pred cCCCceeEeeeeeecCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHH
Confidence 4568999988888888888887665553333 444444333223455799999999997654
No 77
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.12 E-value=19 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 172 ~~~~~vvIIGgG~ig 186 (466)
T PRK06115 172 EVPKHLVVIGAGVIG 186 (466)
T ss_pred cCCCeEEEECCCHHH
Confidence 468999999998643
No 78
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=42.01 E-value=16 Score=27.04 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=10.3
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
..+||||||+|+
T Consensus 162 ~~~rv~iIgSG~ 173 (268)
T cd07371 162 AGKRVAVLGSGG 173 (268)
T ss_pred cCCcEEEEEecC
Confidence 358999999987
No 79
>KOG4545|consensus
Probab=41.50 E-value=8.4 Score=28.17 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.3
Q ss_pred hhhhhcccccccCCCCCEEEEEeCCcceee
Q psy4594 48 YSEMIAFLPLCSHPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 48 YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~ 77 (82)
|.|..+....-+-..|++++|.|+|-|++.
T Consensus 41 y~e~c~d~~~e~~~rP~kA~vy~~glgf~~ 70 (197)
T KOG4545|consen 41 YTEVCVDVVRESYTRPKKALVYGTGLGFMY 70 (197)
T ss_pred HHHHHHHhhHHhhcCCcceEEEEcchHHHH
Confidence 788888877777779999999999988753
No 80
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.45 E-value=17 Score=28.03 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 173 ~~~~~v~IiGgG~~g 187 (461)
T PRK05249 173 HLPRSLIIYGAGVIG 187 (461)
T ss_pred hcCCeEEEECCCHHH
Confidence 358999999999643
No 81
>PLN02576 protoporphyrinogen oxidase
Probab=41.02 E-value=17 Score=28.14 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=11.8
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+...+|+|||||=.|.
T Consensus 10 ~~~~~v~IIGaGisGL 25 (496)
T PLN02576 10 ASSKDVAVVGAGVSGL 25 (496)
T ss_pred cCCCCEEEECcCHHHH
Confidence 4456899999995543
No 82
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=40.92 E-value=11 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=21.6
Q ss_pred cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 35 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
||.+.=...|-.=..+.|-.. + ...+.|+|||+|+| |++|
T Consensus 100 ~g~l~G~NTD~~G~~~~l~~~-~-~~~~~k~vlI~GAG--Gagr 139 (289)
T PRK12548 100 DGKLTGHITDGLGFVRNLREH-G-VDVKGKKLTVIGAG--GAAT 139 (289)
T ss_pred CCEEEEEecCHHHHHHHHHhc-C-CCcCCCEEEEECCc--HHHH
Confidence 555544444533334444321 1 12456899999996 5554
No 83
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.73 E-value=19 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.7
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..|++|+|||||.=
T Consensus 172 ~~~~~vvIiGgG~i 185 (471)
T PRK06467 172 EVPKRLLVMGGGII 185 (471)
T ss_pred cCCCeEEEECCCHH
Confidence 46899999999953
No 84
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=40.45 E-value=19 Score=27.74 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 155 ~~~~~vvIIGgG~~g 169 (438)
T PRK07251 155 TLPERLGIIGGGNIG 169 (438)
T ss_pred hcCCeEEEECCCHHH
Confidence 458999999999644
No 85
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=40.43 E-value=11 Score=28.86 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 125 PDifHevfGHvPmL~~p~ 142 (275)
T PRK11913 125 PDIFHDVFGHVPLLTNPV 142 (275)
T ss_pred CchHHHHhccchhhcCHH
Confidence 457899999999999874
No 86
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=40.19 E-value=12 Score=28.72 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 168 ~~~~~vvViGgG~~g 182 (461)
T TIGR01350 168 EVPESLVIIGGGVIG 182 (461)
T ss_pred cCCCeEEEECCCHHH
Confidence 467999999999755
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=39.83 E-value=15 Score=26.34 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.0
Q ss_pred CCCEEEEEeCCcceee
Q psy4594 62 NPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~ 77 (82)
...|||++|.|.|--+
T Consensus 37 ~~~rvL~~gCG~G~da 52 (218)
T PRK13255 37 AGSRVLVPLCGKSLDM 52 (218)
T ss_pred CCCeEEEeCCCChHhH
Confidence 4579999999999644
No 88
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=39.79 E-value=18 Score=27.45 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.3
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
...|+|+||||||-+
T Consensus 141 ~~~k~v~ViGgG~sA 155 (305)
T COG0492 141 FKGKDVVVIGGGDSA 155 (305)
T ss_pred ccCCeEEEEcCCHHH
Confidence 356799999999864
No 89
>KOG0405|consensus
Probab=39.68 E-value=16 Score=29.87 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.3
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
..-=+-|+||||.||++
T Consensus 18 ~k~fDylvIGgGSGGva 34 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVA 34 (478)
T ss_pred ccccceEEEcCCcchhH
Confidence 34457899999999864
No 90
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=39.64 E-value=19 Score=24.36 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=9.5
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
.|.+|+|+|+|--
T Consensus 19 ~p~~vvv~G~G~v 31 (168)
T PF01262_consen 19 PPAKVVVTGAGRV 31 (168)
T ss_dssp -T-EEEEESTSHH
T ss_pred CCeEEEEECCCHH
Confidence 7899999999853
No 91
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=39.45 E-value=17 Score=30.35 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.4
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
.+..++|+|||||-+|.
T Consensus 428 ~~~~~~V~IIGaGpAGl 444 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGL 444 (752)
T ss_pred CCCCCEEEEECcCHHHH
Confidence 35678999999996654
No 92
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=39.29 E-value=9.9 Score=30.75 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=42.6
Q ss_pred cCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhccccccc--------------------------CCCCCEEE
Q psy4594 14 PNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCS--------------------------HPNPKKVL 67 (82)
Q Consensus 14 ~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~--------------------------h~~pk~VL 67 (82)
+.-|-|.|+=+.+-+|.-|.+|-.+-+=-.+ +|.||..++.. ..++++||
T Consensus 68 ~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpe----TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 68 KHEPIAYITGVKEFYSREFIVNKHVLIPRSD----TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred cCCCHHHHhCcCEEcCcEEEeCCCcccCCCc----HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 3567788877788888888888877665444 56666544322 12457899
Q ss_pred EEeCCcceeee
Q psy4594 68 IFTVGGSTVQY 78 (82)
Q Consensus 68 IiGGGDGg~~r 78 (82)
=+|.|.|..+.
T Consensus 144 DlG~GsG~iai 154 (506)
T PRK01544 144 ELGTGSGCIAI 154 (506)
T ss_pred EccCchhHHHH
Confidence 99999997653
No 93
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.10 E-value=14 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.3
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.|+|+|||||-+|.
T Consensus 537 ~tgKkVaIIGgGPAGL 552 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGL 552 (1019)
T ss_pred CCCCcEEEECCCHHHH
Confidence 4678999999997664
No 94
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=38.95 E-value=12 Score=29.10 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||..+
T Consensus 178 ~~~~~vvIIGgG~~G 192 (472)
T PRK05976 178 TLPKSLVIVGGGVIG 192 (472)
T ss_pred ccCCEEEEECCCHHH
Confidence 357999999999754
No 95
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=38.75 E-value=25 Score=27.97 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=11.8
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
..++|+|||||-.|.
T Consensus 142 ~~~~V~IIGaG~aGl 156 (485)
T TIGR01317 142 TGKKVAVVGSGPAGL 156 (485)
T ss_pred CCCEEEEECCcHHHH
Confidence 458999999996543
No 96
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=38.70 E-value=20 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.2
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..||+|+|||||.-+
T Consensus 167 ~~~k~v~VIGgG~~g 181 (460)
T PRK06292 167 KLPKSLAVIGGGVIG 181 (460)
T ss_pred ccCCeEEEECCCHHH
Confidence 468999999999643
No 97
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=38.42 E-value=20 Score=26.41 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=10.4
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
-.|||.|||||.
T Consensus 82 yGKRvIiiGGGA 93 (218)
T COG1707 82 YGKRVIIIGGGA 93 (218)
T ss_pred hCcEEEEECCch
Confidence 579999999985
No 98
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.26 E-value=22 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
+.|+|||||.|.
T Consensus 43 ~gk~vlViG~G~ 54 (168)
T cd01080 43 AGKKVVVVGRSN 54 (168)
T ss_pred CCCEEEEECCcH
Confidence 679999999996
No 99
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=38.25 E-value=22 Score=25.92 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=11.2
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
+.-+||+|||+||-
T Consensus 171 ~~d~rV~iIaSGdl 184 (271)
T cd07359 171 PGDLRVAVLGTGGL 184 (271)
T ss_pred CCCCcEEEEecCcc
Confidence 34689999999983
No 100
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=38.21 E-value=20 Score=27.97 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.|++|+|||||.-+
T Consensus 165 ~~~~vvIIGgG~iG 178 (450)
T TIGR01421 165 LPKRVVIVGAGYIA 178 (450)
T ss_pred cCCeEEEECCCHHH
Confidence 47999999999644
No 101
>PRK10262 thioredoxin reductase; Provisional
Probab=37.89 E-value=21 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.+++|+|||||+-+
T Consensus 145 ~g~~vvVvGgG~~g 158 (321)
T PRK10262 145 RNQKVAVIGGGNTA 158 (321)
T ss_pred CCCEEEEECCCHHH
Confidence 57899999999743
No 102
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=37.83 E-value=19 Score=31.71 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.9
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.+|+|+|||||+=+
T Consensus 570 ~Gk~VvVIGgG~tA 583 (1006)
T PRK12775 570 LGKSVVVIGAGNTA 583 (1006)
T ss_pred CCCEEEEECCcHHH
Confidence 57999999999844
No 103
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=37.77 E-value=20 Score=28.82 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=11.5
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
.-|++++|||||-
T Consensus 171 ~lP~~lvIiGgG~ 183 (454)
T COG1249 171 ELPKSLVIVGGGY 183 (454)
T ss_pred cCCCEEEEECCCH
Confidence 6799999999983
No 104
>KOG1730|consensus
Probab=37.68 E-value=19 Score=26.59 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=29.4
Q ss_pred eeeccccchhhhhhcccccccCCCCCEEEEEeCCcceee
Q psy4594 39 QCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 39 q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~ 77 (82)
.+-|+|. =+|.|..+|...+-+-|.++|+|+-||..-
T Consensus 61 e~vESDa--D~eLLfniPFtg~vkLkgI~I~g~~d~shP 97 (206)
T KOG1730|consen 61 EYVESDA--DEELLFNIPFTGNVKLKGISIMGEPDGSHP 97 (206)
T ss_pred hhhhccC--CceeEEeccccCceeEEEEEEEeCCCCCCc
Confidence 3444442 379999999999999999999999998653
No 105
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=37.67 E-value=15 Score=29.57 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+..++|+|||+|-.|.
T Consensus 135 ~~g~~V~VIGaGpaGL 150 (564)
T PRK12771 135 DTGKRVAVIGGGPAGL 150 (564)
T ss_pred CCCCEEEEECCCHHHH
Confidence 4678999999996654
No 106
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=37.56 E-value=13 Score=28.87 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=15.5
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 162 PDi~HEl~GHvPlLadp~ 179 (298)
T cd03345 162 PDCCHELLGHVPMLADPT 179 (298)
T ss_pred CchHHHHhccchhhCCHH
Confidence 457899999999999874
No 107
>PRK06370 mercuric reductase; Validated
Probab=37.55 E-value=21 Score=27.69 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 169 ~~~~~vvVIGgG~~g 183 (463)
T PRK06370 169 ELPEHLVIIGGGYIG 183 (463)
T ss_pred ccCCEEEEECCCHHH
Confidence 357999999999643
No 108
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=37.53 E-value=19 Score=30.11 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..|+|+|||||+-+
T Consensus 569 ~gk~VvVIGgG~~a 582 (752)
T PRK12778 569 FGKKVAVVGGGNTA 582 (752)
T ss_pred CCCcEEEECCcHHH
Confidence 56899999999843
No 109
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=36.95 E-value=13 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.5
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 163 PDifHEl~GHvPlLadp~ 180 (287)
T cd03346 163 PDTCHELLGHVPLLADPS 180 (287)
T ss_pred CchHHHHhccchhhcCHH
Confidence 457899999999999874
No 110
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=36.60 E-value=15 Score=27.99 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..+++|+|+|||..+
T Consensus 147 ~~~~~vvVvGgG~~g 161 (444)
T PRK09564 147 EEIKNIVIIGAGFIG 161 (444)
T ss_pred cCCCEEEEECCCHHH
Confidence 457999999998644
No 111
>PRK13748 putative mercuric reductase; Provisional
Probab=36.57 E-value=24 Score=28.02 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=11.6
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..|++|+|||||.-
T Consensus 268 ~~~~~vvViGgG~i 281 (561)
T PRK13748 268 TIPERLAVIGSSVV 281 (561)
T ss_pred cCCCeEEEECCCHH
Confidence 46799999999863
No 112
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=36.37 E-value=14 Score=28.64 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 164 ~~~~~vvVIGgG~~g 178 (446)
T TIGR01424 164 TLPKSILILGGGYIA 178 (446)
T ss_pred ccCCeEEEECCcHHH
Confidence 358999999998754
No 113
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.83 E-value=23 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 170 ~~~~~vvVIGgG~ig 184 (466)
T PRK07818 170 ELPKSIVIAGAGAIG 184 (466)
T ss_pred cCCCeEEEECCcHHH
Confidence 368999999998643
No 114
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=35.65 E-value=22 Score=23.02 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=9.8
Q ss_pred CEEEEEeCCccee
Q psy4594 64 KKVLIFTVGGSTV 76 (82)
Q Consensus 64 k~VLIiGGGDGg~ 76 (82)
.+.+|+.||||.+
T Consensus 50 ~d~vvv~GGDGTi 62 (124)
T smart00046 50 FDRVLVCGGDGTV 62 (124)
T ss_pred CCEEEEEccccHH
Confidence 3578888889964
No 115
>PRK07846 mycothione reductase; Reviewed
Probab=35.62 E-value=23 Score=27.68 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.|++|+|||||.-+
T Consensus 165 ~~~~vvIIGgG~iG 178 (451)
T PRK07846 165 LPESLVIVGGGFIA 178 (451)
T ss_pred cCCeEEEECCCHHH
Confidence 57999999998644
No 116
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=35.57 E-value=26 Score=26.16 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=10.9
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||||||+|+
T Consensus 177 ~~d~rVliIaSG~ 189 (277)
T cd07368 177 QGDERVAIIGSGG 189 (277)
T ss_pred CCCCCEEEEEcCc
Confidence 4568999999986
No 117
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=35.54 E-value=25 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..+++|+|||||.-+
T Consensus 135 ~~~~~vvViGgG~~g 149 (427)
T TIGR03385 135 NKVENVVIIGGGYIG 149 (427)
T ss_pred cCCCeEEEECCCHHH
Confidence 457899999999654
No 118
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=35.54 E-value=12 Score=26.82 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=15.0
Q ss_pred CCCCEEEEEeCCcceeee
Q psy4594 61 PNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~r 78 (82)
++..+||-||.|.|..+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~ 72 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATL 72 (247)
T ss_pred CCCCEEEEEcccCCHHHH
Confidence 466899999999998653
No 119
>PLN02676 polyamine oxidase
Probab=35.50 E-value=12 Score=29.94 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.4
Q ss_pred ccCCCCCEEEEEeCCccee
Q psy4594 58 CSHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 58 ~~h~~pk~VLIiGGGDGg~ 76 (82)
+..+...+|+|||||-.|.
T Consensus 21 ~~~~~~~~v~IIGaG~sGL 39 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGI 39 (487)
T ss_pred hcccCCCCEEEECCCHHHH
Confidence 3355667899999997765
No 120
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=35.32 E-value=22 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.++|+|||||-.|.
T Consensus 191 ~~~k~VaIIGaGpAGl 206 (652)
T PRK12814 191 KSGKKVAIIGAGPAGL 206 (652)
T ss_pred CCCCEEEEECCCHHHH
Confidence 4568999999998764
No 121
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=35.10 E-value=24 Score=27.30 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.3
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.|++|+|||||.-+
T Consensus 147 ~~~~vvViGgG~ig 160 (438)
T PRK13512 147 QVDKALVVGAGYIS 160 (438)
T ss_pred CCCEEEEECCCHHH
Confidence 57999999998643
No 122
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=34.83 E-value=20 Score=30.30 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.3
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.++|||||||--|+
T Consensus 124 ~~svLVIGGGvAGi 137 (622)
T COG1148 124 SKSVLVIGGGVAGI 137 (622)
T ss_pred ccceEEEcCcHHHH
Confidence 47899999997654
No 123
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=34.70 E-value=23 Score=27.60 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-|
T Consensus 168 ~~~~~vvIIGgG~iG 182 (458)
T PRK06912 168 SIPSSLLIVGGGVIG 182 (458)
T ss_pred ccCCcEEEECCCHHH
Confidence 357999999999744
No 124
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=34.65 E-value=26 Score=27.15 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=11.9
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 164 ~~~~~vvIIGgG~~g 178 (463)
T TIGR02053 164 RIPESLAVIGGGAIG 178 (463)
T ss_pred cCCCeEEEECCCHHH
Confidence 357999999999643
No 125
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=34.58 E-value=15 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.5
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 163 PDifHEl~GHvPlLadp~ 180 (306)
T cd03347 163 PDICHELLGHVPLFADPS 180 (306)
T ss_pred CchHHHHhccchhhcCHH
Confidence 457899999999999874
No 126
>PRK06116 glutathione reductase; Validated
Probab=34.41 E-value=25 Score=27.10 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 165 ~~~~~vvViGgG~~g 179 (450)
T PRK06116 165 ELPKRVAVVGAGYIA 179 (450)
T ss_pred ccCCeEEEECCCHHH
Confidence 357999999999643
No 127
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=34.39 E-value=15 Score=32.13 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=14.4
Q ss_pred CCCCCEEEEEeCCcceee
Q psy4594 60 HPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~~ 77 (82)
.++.|+|+|||||-.|.+
T Consensus 303 ~~~gkkVaVIGsGPAGLs 320 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLI 320 (944)
T ss_pred cCCCCeEEEECCCHHHHH
Confidence 357899999999977653
No 128
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=34.12 E-value=16 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.2
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 181 ~~~~~vvVvGgG~~g 195 (475)
T PRK06327 181 EVPKKLAVIGAGVIG 195 (475)
T ss_pred ccCCeEEEECCCHHH
Confidence 357999999999754
No 129
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=34.02 E-value=17 Score=27.16 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=14.9
Q ss_pred CCCCEEEEEeCCcceeee
Q psy4594 61 PNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~r 78 (82)
.++-.+.|++||||.++|
T Consensus 53 ~~~~d~ivvlGGDGtlL~ 70 (281)
T COG0061 53 EEKADLIVVLGGDGTLLR 70 (281)
T ss_pred ccCceEEEEeCCcHHHHH
Confidence 477889999999998765
No 130
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=34.00 E-value=26 Score=26.61 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
.+++|+|||||.-
T Consensus 143 ~~~~vvViGgG~i 155 (396)
T PRK09754 143 PERSVVIVGAGTI 155 (396)
T ss_pred cCCeEEEECCCHH
Confidence 5789999999853
No 131
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=33.83 E-value=26 Score=25.11 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=10.5
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+||||||+||-
T Consensus 157 ~~~~vliI~SGdl 169 (260)
T cd07320 157 SDLRVHVVASGDL 169 (260)
T ss_pred cCCcEEEEEeCcc
Confidence 3579999999873
No 132
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.80 E-value=17 Score=27.33 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..++|+|||||.-+
T Consensus 140 ~~~~vvViGgG~~g 153 (377)
T PRK04965 140 DAQRVLVVGGGLIG 153 (377)
T ss_pred cCCeEEEECCCHHH
Confidence 56899999999743
No 133
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=33.56 E-value=30 Score=25.35 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.7
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+|||||++||-
T Consensus 169 ~~~rvlvIaSGdl 181 (269)
T PRK13358 169 ADERVAVIGTGGL 181 (269)
T ss_pred CCCcEEEEecCCc
Confidence 3589999999983
No 134
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=33.49 E-value=18 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=15.0
Q ss_pred chhhhhhcccccccCCC
Q psy4594 46 FSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 46 ~~YhE~lvh~~~~~h~~ 62 (82)
.++||.+-|+||++||.
T Consensus 141 D~fHdvfGHvP~Lt~P~ 157 (291)
T COG3186 141 DIFHDVFGHVPMLTHPV 157 (291)
T ss_pred cHHHHHhccCchhcCch
Confidence 46799999999999983
No 135
>PRK14727 putative mercuric reductase; Provisional
Probab=33.33 E-value=22 Score=27.89 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.4
Q ss_pred CCCCCEEEEEeCCccee
Q psy4594 60 HPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~ 76 (82)
-+.+-+|+|||+|-+|.
T Consensus 13 ~~~~~dvvvIG~G~aG~ 29 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAF 29 (479)
T ss_pred CCCCCcEEEECCCHHHH
Confidence 34567899999998775
No 136
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=33.26 E-value=28 Score=26.12 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=10.9
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 178 ~rd~rV~iIaSG~ 190 (277)
T cd07364 178 DEDLKVAIWGTGG 190 (277)
T ss_pred CcCCCEEEEecCc
Confidence 4568899999987
No 137
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=32.95 E-value=16 Score=24.88 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=14.5
Q ss_pred CCCCEEEEEeCCcceeee
Q psy4594 61 PNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~r 78 (82)
..+++||=||.|.|..++
T Consensus 33 ~~~~~vLDlG~G~G~~~~ 50 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTR 50 (240)
T ss_pred CCCCeEEEECCCccHHHH
Confidence 456899999999997544
No 138
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.93 E-value=28 Score=26.93 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=11.9
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 170 ~~~~~vvVvGgG~~g 184 (462)
T PRK06416 170 EVPKSLVVIGGGYIG 184 (462)
T ss_pred ccCCeEEEECCCHHH
Confidence 357999999998643
No 139
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=32.85 E-value=17 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=17.0
Q ss_pred CCCCCEEEEEeCCcceeeee
Q psy4594 60 HPNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~~rE 79 (82)
.++.++||=||.|.|..++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~ 39 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRA 39 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHH
Confidence 47889999999999987764
No 140
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=32.75 E-value=38 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=13.2
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
+..++||.||.|.|..
T Consensus 76 ~~g~~VLDiG~G~G~~ 91 (272)
T PRK11873 76 KPGETVLDLGSGGGFD 91 (272)
T ss_pred CCCCEEEEeCCCCCHH
Confidence 3568999999999863
No 141
>PRK14055 aromatic amino acid hydroxylase; Provisional
Probab=32.71 E-value=16 Score=29.10 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+++.||.+-|.||+++|.
T Consensus 196 PDifHEvfGHvPmLanP~ 213 (362)
T PRK14055 196 PDLIHDLLGHVPWLLHPS 213 (362)
T ss_pred chHHHHhhccchhhcCHH
Confidence 457899999999999874
No 142
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=32.71 E-value=17 Score=22.08 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.7
Q ss_pred CCCEEEEEeCCcceeeee
Q psy4594 62 NPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~rE 79 (82)
+.++||-+|.|.|..+.+
T Consensus 19 ~~~~vldlG~G~G~~~~~ 36 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIE 36 (124)
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 457999999999987654
No 143
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=32.53 E-value=18 Score=29.72 Aligned_cols=18 Identities=11% Similarity=0.312 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 286 PDi~HEl~GHvPlLadp~ 303 (457)
T TIGR01269 286 PDCIHELLGHMPMLADRQ 303 (457)
T ss_pred CchHHHHhcccccccCHH
Confidence 457899999999999874
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=32.52 E-value=27 Score=28.19 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.+++|+|||||.-+
T Consensus 142 ~g~~VvVIGgG~~g 155 (555)
T TIGR03143 142 TGMDVFVIGGGFAA 155 (555)
T ss_pred CCCEEEEECCCHHH
Confidence 57999999999743
No 145
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=32.43 E-value=16 Score=24.91 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
....+||-+|.|.|..+..
T Consensus 50 ~~~~~vldiG~G~G~~~~~ 68 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIA 68 (239)
T ss_pred CCCCeEEEeCCCCCHHHHH
Confidence 3457999999999987543
No 146
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=32.29 E-value=28 Score=27.13 Aligned_cols=13 Identities=23% Similarity=0.072 Sum_probs=10.0
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
....+|+|||||=
T Consensus 22 ~~~~DVvIIGgGi 34 (460)
T TIGR03329 22 DTQADVCIVGGGF 34 (460)
T ss_pred CceeCEEEECCCH
Confidence 4446899999993
No 147
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=32.17 E-value=27 Score=27.32 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.|++|+|||||.-+
T Consensus 168 ~~k~vvVIGgG~ig 181 (452)
T TIGR03452 168 LPESLVIVGGGYIA 181 (452)
T ss_pred cCCcEEEECCCHHH
Confidence 58999999999643
No 148
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=31.90 E-value=29 Score=26.88 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.4
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
+..+||+|||+|+-
T Consensus 233 ~~d~rV~IIaSGgL 246 (328)
T cd07366 233 PGDARVGVIASGGL 246 (328)
T ss_pred CCCCCEEEEEeCcc
Confidence 45789999999873
No 149
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=31.87 E-value=14 Score=29.18 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=11.5
Q ss_pred CEEEEEeCCcceee
Q psy4594 64 KKVLIFTVGGSTVQ 77 (82)
Q Consensus 64 k~VLIiGGGDGg~~ 77 (82)
-+|+|||||-.|.+
T Consensus 40 ~DViIVGaGPAG~~ 53 (450)
T PLN00093 40 LRVAVIGGGPAGAC 53 (450)
T ss_pred CeEEEECCCHHHHH
Confidence 48999999987753
No 150
>PLN02735 carbamoyl-phosphate synthase
Probab=31.67 E-value=36 Score=30.34 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.9
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
+.|+|||||+|...+
T Consensus 22 ~~kkVLiiGsG~~~i 36 (1102)
T PLN02735 22 DLKKIMILGAGPIVI 36 (1102)
T ss_pred CCCEEEEECCCcccc
Confidence 458999999998533
No 151
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=31.67 E-value=29 Score=25.66 Aligned_cols=13 Identities=15% Similarity=0.440 Sum_probs=10.9
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+||||||+||-
T Consensus 168 ~~~~v~iIaSG~l 180 (280)
T cd07370 168 SDRRVALLASGSL 180 (280)
T ss_pred cCCCEEEEEeccc
Confidence 5679999999984
No 152
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=28 Score=28.60 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.2
Q ss_pred CCCCCEEEEEeCCcceeee
Q psy4594 60 HPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 60 h~~pk~VLIiGGGDGg~~r 78 (82)
.+.|=+|||+|||..|++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaA 226 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAA 226 (520)
T ss_pred ccCCceEEEEcCCcchhHH
Confidence 3567799999999887653
No 153
>KOG1336|consensus
Probab=30.92 E-value=26 Score=28.96 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.7
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
-+.++|+|+|||+|+.+
T Consensus 72 ~~ar~fvivGgG~~g~v 88 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAV 88 (478)
T ss_pred cccceEEEEcCCchhhh
Confidence 56789999999996543
No 154
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=30.89 E-value=32 Score=25.83 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=10.6
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 177 ~~d~rv~iiaSG~ 189 (276)
T cd07949 177 PEDLRVVVLGTGG 189 (276)
T ss_pred CcCCCEEEEEeCc
Confidence 3457999999987
No 155
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=30.86 E-value=14 Score=25.49 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=23.6
Q ss_pred hhhhcccccccCCCCCEEEEEeC-Ccceeeeee
Q psy4594 49 SEMIAFLPLCSHPNPKKVLIFTV-GGSTVQYSF 80 (82)
Q Consensus 49 hE~lvh~~~~~h~~pk~VLIiGG-GDGg~~rEl 80 (82)
.|+|+|+|....-+.+.++|.|+ .++.+=+++
T Consensus 45 ~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~i 77 (152)
T PF06201_consen 45 EQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTI 77 (152)
T ss_dssp SSEEEEEEEEEEEEEEEEEEE---STTTSEEEE
T ss_pred ceeEEEEccCCceEEEEEEEEeccCCCCCCeEE
Confidence 79999999887668889999998 676655543
No 156
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=30.72 E-value=28 Score=25.39 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=9.3
Q ss_pred CCEEEEEeCCc
Q psy4594 63 PKKVLIFTVGG 73 (82)
Q Consensus 63 pk~VLIiGGGD 73 (82)
.++|||||+|+
T Consensus 150 ~~~v~ii~SG~ 160 (253)
T cd07363 150 DEGVLIIGSGS 160 (253)
T ss_pred hCCEEEEecCc
Confidence 35999999987
No 157
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=30.70 E-value=20 Score=25.62 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=16.7
Q ss_pred CCCCEEEEEeCCcceeeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rEl 80 (82)
..+++||=||.|.|..++.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l 47 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYL 47 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 56789999999999887654
No 158
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=30.66 E-value=29 Score=27.17 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=10.7
Q ss_pred CEEEEEeCCcce
Q psy4594 64 KKVLIFTVGGST 75 (82)
Q Consensus 64 k~VLIiGGGDGg 75 (82)
.+||=||||.|+
T Consensus 88 ~~VlCIGGGAGA 99 (315)
T PF11312_consen 88 LRVLCIGGGAGA 99 (315)
T ss_pred ceEEEECCChHH
Confidence 699999999974
No 159
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=30.66 E-value=37 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.6
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
+...|||++|.|.|--+
T Consensus 33 ~~~~rvLd~GCG~G~da 49 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDL 49 (213)
T ss_pred CCCCeEEEeCCCchhHH
Confidence 45679999999999543
No 160
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=30.51 E-value=30 Score=25.23 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+||||||+||-
T Consensus 158 ~~~~vliIaSGdl 170 (256)
T cd07952 158 YEKRVAVIISADH 170 (256)
T ss_pred cCCcEEEEEecCc
Confidence 4678999999974
No 161
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=30.39 E-value=34 Score=25.46 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=20.0
Q ss_pred cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCc
Q psy4594 35 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGD 73 (82)
||.+.=..-|-.=.-++|-. -....+.++|||||.|-
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGG 137 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGG 137 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcH
Confidence 55555455553333344432 11234668999999863
No 162
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=30.32 E-value=20 Score=29.17 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 265 PDi~Hel~GHvPlla~p~ 282 (436)
T TIGR01268 265 PDICHELLGHVPLFADVE 282 (436)
T ss_pred ChhHHHHhccchhhCCHH
Confidence 457899999999999874
No 163
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=30.28 E-value=35 Score=25.05 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCceeeeccccchhhhhhcc-cccccCCCCCEEEEEeCCcceeee
Q psy4594 35 DGIIQCTEFDEFSYSEMIAF-LPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh-~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
||.+.=...|-.-.-.++.+ .. .....++|||+|+| +++|
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~--~~~~~k~vlVlGaG--g~a~ 136 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLG--VDLKGKRILILGAG--GAAR 136 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccC--CCCCCCEEEEEcCc--HHHH
Confidence 45554444453333344432 11 12466899999984 5544
No 164
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=30.28 E-value=36 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.3
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..-+||++|+|+.|
T Consensus 57 ~~~kiLLLG~geSG 70 (389)
T PF00503_consen 57 REIKILLLGSGESG 70 (389)
T ss_dssp EEEEEEEEESTTSS
T ss_pred ccceEEEECCCCcc
Confidence 34489999999976
No 165
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=30.14 E-value=30 Score=27.06 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.2
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
-+.|+|||||.|+-+
T Consensus 172 l~~k~vLvIGaGem~ 186 (338)
T PRK00676 172 SKKASLLFIGYSEIN 186 (338)
T ss_pred ccCCEEEEEcccHHH
Confidence 467899999999754
No 166
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=30.11 E-value=51 Score=24.93 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEe
Q psy4594 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFT 70 (82)
Q Consensus 26 ~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiG 70 (82)
..+--++|+|+ +-|.+.| -.|++.-+-.==.....|++|||.=
T Consensus 104 ~~~kFIlf~DD-LsFe~~d-~~yk~LKs~LeGgle~~P~NvliyA 146 (249)
T PF05673_consen 104 RPYKFILFCDD-LSFEEGD-TEYKALKSVLEGGLEARPDNVLIYA 146 (249)
T ss_pred CCCCEEEEecC-CCCCCCc-HHHHHHHHHhcCccccCCCcEEEEE
Confidence 44566999997 5566666 5788866544333446899999863
No 167
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=30.03 E-value=33 Score=25.87 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.8
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 177 ~~d~rV~iIaSG~ 189 (278)
T PRK13364 177 PSDERVVVIGTGG 189 (278)
T ss_pred CCCCCEEEEEeCc
Confidence 3568999999987
No 168
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.93 E-value=21 Score=29.36 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=15.6
Q ss_pred cchhhhhhcccccccCCC
Q psy4594 45 EFSYSEMIAFLPLCSHPN 62 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~~ 62 (82)
+.+.||.+-|.||+++|.
T Consensus 292 PDi~HEl~GHvPlLadp~ 309 (464)
T TIGR01270 292 PDTCHELLGHMPLLADPS 309 (464)
T ss_pred CchHHHHhcccchhcCHH
Confidence 457899999999999874
No 169
>PRK14694 putative mercuric reductase; Provisional
Probab=29.76 E-value=34 Score=26.72 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=11.3
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..|++|+|||||.-
T Consensus 176 ~~~~~vvViG~G~~ 189 (468)
T PRK14694 176 HIPERLLVIGASVV 189 (468)
T ss_pred cCCCeEEEECCCHH
Confidence 35799999999864
No 170
>KOG0012|consensus
Probab=29.71 E-value=31 Score=27.77 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=13.9
Q ss_pred CCCEEEEEeCCcceeeeeecC
Q psy4594 62 NPKKVLIFTVGGSTVQYSFPF 82 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~rEl~~ 82 (82)
=-++||+||+++- |+||
T Consensus 336 L~~~~L~ig~~~t----eiPf 352 (380)
T KOG0012|consen 336 LKTNVLRIGNTET----EIPF 352 (380)
T ss_pred cccCeEEecCCCc----cccc
Confidence 3468999999887 8887
No 171
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=29.60 E-value=30 Score=20.60 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=10.6
Q ss_pred cccCCCCCEEEEEeC
Q psy4594 57 LCSHPNPKKVLIFTV 71 (82)
Q Consensus 57 ~~~h~~pk~VLIiGG 71 (82)
++...+.|+|||+++
T Consensus 20 ~i~~g~~~~~Lvv~~ 34 (80)
T PF08545_consen 20 LIASGRAKNALVVGG 34 (80)
T ss_dssp HHHTTS-SEEEEEEE
T ss_pred HHhhccCCEEEEEee
Confidence 344558899999987
No 172
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=29.56 E-value=21 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.5
Q ss_pred cCCCCCEEEEEeCCcceeeeee
Q psy4594 59 SHPNPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 59 ~h~~pk~VLIiGGGDGg~~rEl 80 (82)
...++.+|||=|.|-|..+.||
T Consensus 53 ~~~~~~~VLVPGsGLGRLa~Ei 74 (270)
T PF07942_consen 53 SDRSKIRVLVPGSGLGRLAWEI 74 (270)
T ss_pred cCCCccEEEEcCCCcchHHHHH
Confidence 3356789999999999999886
No 173
>KOG1201|consensus
Probab=29.54 E-value=37 Score=26.39 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..+.|||-|||.|.
T Consensus 37 ~g~~vLITGgg~Gl 50 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL 50 (300)
T ss_pred cCCEEEEeCCCchH
Confidence 45679999998773
No 174
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=29.48 E-value=24 Score=26.10 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
+..++|+|+|||..+
T Consensus 143 ~~~~~vvVvG~G~~g 157 (364)
T TIGR03169 143 PGTKRLAVVGGGAAG 157 (364)
T ss_pred CCCceEEEECCCHHH
Confidence 456899999998654
No 175
>KOG2495|consensus
Probab=29.34 E-value=29 Score=28.76 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.5
Q ss_pred cCCCCCEEEEEeCCccee
Q psy4594 59 SHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 59 ~h~~pk~VLIiGGGDGg~ 76 (82)
.+.+.|+|+|+|.|-|++
T Consensus 51 ~~~kKk~vVVLGsGW~a~ 68 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAI 68 (491)
T ss_pred CCCCCceEEEEcCchHHH
Confidence 456789999999888764
No 176
>PTZ00052 thioredoxin reductase; Provisional
Probab=29.32 E-value=35 Score=27.14 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.4
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..|++|+|||||.=
T Consensus 180 ~~~~~vvIIGgG~i 193 (499)
T PTZ00052 180 KDPGKTLIVGASYI 193 (499)
T ss_pred cCCCeEEEECCCHH
Confidence 35789999999963
No 177
>PLN02507 glutathione reductase
Probab=29.23 E-value=34 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=11.8
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 201 ~~~k~vvVIGgG~ig 215 (499)
T PLN02507 201 ELPKRAVVLGGGYIA 215 (499)
T ss_pred hcCCeEEEECCcHHH
Confidence 347999999998643
No 178
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.19 E-value=39 Score=23.50 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=10.0
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..|+|||.||+.|
T Consensus 14 ~~k~vlItGas~g 26 (258)
T PRK06935 14 DGKVAIVTGGNTG 26 (258)
T ss_pred CCCEEEEeCCCch
Confidence 4589999998654
No 179
>PRK06141 ornithine cyclodeaminase; Validated
Probab=29.16 E-value=40 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred EEecCCCCe-EEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCc
Q psy4594 22 SSNRKEFGT-ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73 (82)
Q Consensus 22 v~~~~~~G~-~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGD 73 (82)
+++.+. |. .-++||..-..-+-- .-+-.-+. .++.++.++|+|||.|.
T Consensus 87 l~d~~t-G~p~ai~d~~~lT~~RTa-a~sala~~--~La~~~~~~v~iiG~G~ 135 (314)
T PRK06141 87 LFDGRT-GEPLALVDGTELTARRTA-AASALAAS--YLARKDASRLLVVGTGR 135 (314)
T ss_pred EEECCC-CCEEEEEcCcchhcchhH-HHHHHHHH--HhCCCCCceEEEECCcH
Confidence 444444 54 446777766554442 22222221 24567899999999875
No 180
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=29.10 E-value=35 Score=25.86 Aligned_cols=14 Identities=0% Similarity=0.223 Sum_probs=11.4
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..|||+|||+||-.
T Consensus 179 ~~~RV~vIaSG~LS 192 (294)
T cd07372 179 TGRRAVLLASNTLS 192 (294)
T ss_pred cCCeEEEEEeCccc
Confidence 46899999999843
No 181
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=28.92 E-value=21 Score=25.57 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
+++.+||=+|+|.|..+.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~ 61 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIK 61 (255)
T ss_pred CCCCEEEEeCCCchHHHHH
Confidence 5678999999999987654
No 182
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=28.90 E-value=23 Score=24.62 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=30.3
Q ss_pred CCeeEEEecCCCCeEEEEcCceeeeccccchh-hhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 17 PFYPSSSNRKEFGTALILDGIIQCTEFDEFSY-SEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 17 ~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~Y-hE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
|-|.+.=..+.++..+.++..+.....+.... ..++-+ ..+++++||=+|.|.|..+.
T Consensus 45 pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~----~~~~~~~ilDig~G~G~~~~ 103 (251)
T TIGR03534 45 PVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALER----LKKGPLRVLDLGTGSGAIAL 103 (251)
T ss_pred CHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHh----cccCCCeEEEEeCcHhHHHH
Confidence 44444333344566666665544433332221 122222 12456799999999998654
No 183
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=28.78 E-value=47 Score=21.35 Aligned_cols=12 Identities=50% Similarity=0.620 Sum_probs=10.1
Q ss_pred CCCCEEEEEeCC
Q psy4594 61 PNPKKVLIFTVG 72 (82)
Q Consensus 61 ~~pk~VLIiGGG 72 (82)
.+.++|+|+|+|
T Consensus 17 ~~~~~i~iiG~G 28 (155)
T cd01065 17 LKGKKVLILGAG 28 (155)
T ss_pred CCCCEEEEECCc
Confidence 467899999986
No 184
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=28.72 E-value=32 Score=25.53 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=11.1
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
.++.+|+|||.|-
T Consensus 9 ~~~~~V~vvG~GG 21 (244)
T TIGR03736 9 SRPVSVVLVGAGG 21 (244)
T ss_pred hCCCeEEEEcCCh
Confidence 5889999999874
No 185
>KOG1322|consensus
Probab=28.45 E-value=44 Score=26.79 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCcceeeeee
Q psy4594 62 NPKKVLIFTVGGSTVQYSF 80 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~rEl 80 (82)
+.=+.||+|||.|.-+|=|
T Consensus 8 ~~vkaiILvGG~GTRLrPL 26 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPL 26 (371)
T ss_pred cceeEEEEecCCCceeece
Confidence 5568999999999988754
No 186
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=28.44 E-value=38 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=11.9
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 156 ~~~~~v~ViGgG~~g 170 (441)
T PRK08010 156 ELPGHLGILGGGYIG 170 (441)
T ss_pred ccCCeEEEECCCHHH
Confidence 467899999998643
No 187
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=28.40 E-value=37 Score=25.41 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=10.8
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 178 ~~d~rv~iIaSG~ 190 (277)
T cd07950 178 PEDLKVAVVGTGG 190 (277)
T ss_pred CcCCCEEEEEcCc
Confidence 4567999999987
No 188
>PRK13659 hypothetical protein; Provisional
Probab=28.39 E-value=25 Score=23.48 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=11.4
Q ss_pred EEEEEeCCcceeeee
Q psy4594 65 KVLIFTVGGSTVQYS 79 (82)
Q Consensus 65 ~VLIiGGGDGg~~rE 79 (82)
.-+||||||....+|
T Consensus 21 ~~v~i~~gd~alskE 35 (103)
T PRK13659 21 SKLVIESGDSALSKE 35 (103)
T ss_pred ceEEECCCCccccHH
Confidence 445779999887766
No 189
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=28.38 E-value=24 Score=24.97 Aligned_cols=19 Identities=16% Similarity=-0.050 Sum_probs=15.3
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
.++++||-||.|.|..++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~ 59 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRY 59 (251)
T ss_pred cCCCeEEEeeCCCCHHHHH
Confidence 3578999999999976554
No 190
>KOG2819|consensus
Probab=28.30 E-value=76 Score=25.66 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCcccEEEccCCCCee-EEEecCCCCeEEEEcCcee
Q psy4594 5 DKKVRVLSYPNKPFYP-SSSNRKEFGTALILDGIIQ 39 (82)
Q Consensus 5 ~~~~~vl~~~~s~yQ~-iv~~~~~~G~~L~LDg~~q 39 (82)
.++.+|+|++++|.-+ ||+.-.+-|..|..|+--|
T Consensus 39 ik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQ 74 (413)
T KOG2819|consen 39 IKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQ 74 (413)
T ss_pred eeeEEEEEecCCCcceeEEEecCCCceEEEechhhh
Confidence 4688999999999766 5888899999998887544
No 191
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=28.30 E-value=36 Score=30.42 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..+|+|+|||||+-+
T Consensus 666 ~~GKrVVVIGGGnVA 680 (1019)
T PRK09853 666 KLGKHVVVVGGGNTA 680 (1019)
T ss_pred cCCCEEEEECCChHH
Confidence 357999999999743
No 192
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=28.17 E-value=16 Score=26.77 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=10.9
Q ss_pred CEEEEEeCCccee
Q psy4594 64 KKVLIFTVGGSTV 76 (82)
Q Consensus 64 k~VLIiGGGDGg~ 76 (82)
-+|+|||||-.|.
T Consensus 26 ~DVvIVGgGpAGl 38 (257)
T PRK04176 26 VDVAIVGAGPSGL 38 (257)
T ss_pred CCEEEECccHHHH
Confidence 3899999998765
No 193
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=27.96 E-value=51 Score=22.77 Aligned_cols=10 Identities=0% Similarity=0.235 Sum_probs=7.9
Q ss_pred CCEEEEEeCC
Q psy4594 63 PKKVLIFTVG 72 (82)
Q Consensus 63 pk~VLIiGGG 72 (82)
.++|-||||+
T Consensus 91 ~~~i~ViGG~ 100 (161)
T PF00186_consen 91 DEEIFVIGGA 100 (161)
T ss_dssp ESEEEEEE-H
T ss_pred CCcEEEECCH
Confidence 6899999996
No 194
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=27.96 E-value=32 Score=25.51 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=9.7
Q ss_pred CCEEEEEeCCc
Q psy4594 63 PKKVLIFTVGG 73 (82)
Q Consensus 63 pk~VLIiGGGD 73 (82)
.+||+|||+|+
T Consensus 168 ~~rv~ii~SG~ 178 (272)
T cd07362 168 DKRVVFLASGS 178 (272)
T ss_pred CCCEEEEEeCc
Confidence 58999999987
No 195
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=27.87 E-value=41 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=20.9
Q ss_pred cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 35 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
||.+.=..-|-.=.-++|-... ...+.|+|||||.| |++|
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~~~--~~~~~k~vlvlGaG--Gaar 137 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKESG--FDIKGKTMVLLGAG--GAST 137 (288)
T ss_pred CCEEEEEecCHHHHHHHHHhcC--CCcCCCEEEEECCc--HHHH
Confidence 5554434444333344554311 12466899999974 4444
No 196
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=27.86 E-value=1.1e+02 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCc
Q psy4594 35 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGD 73 (82)
||.+.=..-|-.=..++|-+.......+.++|||||.|.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGG 135 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGG 135 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcH
Confidence 454444444433344555431111123578999998753
No 197
>PLN02546 glutathione reductase
Probab=27.78 E-value=25 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.1
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..+++|+|||||.-+
T Consensus 250 ~~~k~V~VIGgG~iG 264 (558)
T PLN02546 250 SKPEKIAIVGGGYIA 264 (558)
T ss_pred ccCCeEEEECCCHHH
Confidence 368999999999643
No 198
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=27.68 E-value=21 Score=24.75 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCCEEEEEeCCcceeeee
Q psy4594 62 NPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~rE 79 (82)
.+++||-+|.|.|..++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~ 47 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLY 47 (197)
T ss_pred CCCcEEEECCCCCHHHHH
Confidence 568999999999986643
No 199
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=27.50 E-value=41 Score=25.19 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=21.0
Q ss_pred cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 35 DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 35 Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
||.+.=...|-.=.-.+|-+ -....+.|+|||+|. ||++|
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~--~~~~~~~k~vlilGa--GGaar 140 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEE--GLPNAKLDSVVQVGA--GGVGN 140 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHh--cCcCcCCCeEEEECC--cHHHH
Confidence 55554444453333444432 111245689999998 45444
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=27.48 E-value=38 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.5
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
+|++|+|||||.-+
T Consensus 236 ~pk~VvIIGgG~iG 249 (561)
T PTZ00058 236 EAKRIGIAGSGYIA 249 (561)
T ss_pred CCCEEEEECCcHHH
Confidence 38999999999643
No 201
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=27.38 E-value=40 Score=25.34 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.6
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 178 ~~d~rV~iIaSG~ 190 (279)
T PRK13365 178 PEDLRVVVVGTGG 190 (279)
T ss_pred CcCCCEEEEEeCc
Confidence 3457999999987
No 202
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=27.37 E-value=21 Score=28.41 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
.+..+|+|||||-.|.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~ 24 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLT 24 (538)
T ss_pred cCCCCEEEECCCHHHHH
Confidence 34568999999987653
No 203
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=27.37 E-value=39 Score=26.45 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
.|++|+|||||.-
T Consensus 176 ~~~~vvVIGgG~i 188 (466)
T PRK07845 176 LPEHLIVVGSGVT 188 (466)
T ss_pred cCCeEEEECCCHH
Confidence 4789999999863
No 204
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.22 E-value=45 Score=23.04 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=10.3
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
+.|+|||.||+.|
T Consensus 8 ~~k~~lItGas~g 20 (254)
T PRK08085 8 AGKNILITGSAQG 20 (254)
T ss_pred CCCEEEEECCCCh
Confidence 4679999998765
No 205
>PLN02697 lycopene epsilon cyclase
Probab=27.12 E-value=24 Score=28.89 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=12.3
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
...-+|+|||||-.|.
T Consensus 106 ~~~~DVvIVGaGPAGL 121 (529)
T PLN02697 106 DGTLDLVVIGCGPAGL 121 (529)
T ss_pred cCcccEEEECcCHHHH
Confidence 3446899999998764
No 206
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=27.10 E-value=37 Score=26.99 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=11.8
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
..|++|+|||||.-+
T Consensus 178 ~~~~~vvIIGgG~iG 192 (484)
T TIGR01438 178 YCPGKTLVVGASYVA 192 (484)
T ss_pred ccCCCEEEECCCHHH
Confidence 367899999998643
No 207
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=27.06 E-value=1.1e+02 Score=23.24 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=27.8
Q ss_pred EEEE-cCceeeeccccchhhhhhcccccccCCCCCEEEEEeCC
Q psy4594 31 ALIL-DGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72 (82)
Q Consensus 31 ~L~L-Dg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGG 72 (82)
+... ||.+.-..-|-.-+-.+|..--.-.....++|||+|.|
T Consensus 93 l~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAG 135 (283)
T COG0169 93 LVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAG 135 (283)
T ss_pred EEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCc
Confidence 4445 48888888886667777776222112246899999975
No 208
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=27.03 E-value=35 Score=25.53 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=10.3
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
..+||||||+|+
T Consensus 171 ~~~rV~iIaSG~ 182 (282)
T TIGR02298 171 SDGRVAVLASGS 182 (282)
T ss_pred cCCCEEEEEecc
Confidence 468999999987
No 209
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.79 E-value=33 Score=29.04 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=14.9
Q ss_pred cCCCCCEEEEEeCCccee
Q psy4594 59 SHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 59 ~h~~pk~VLIiGGGDGg~ 76 (82)
..++.+++||+|+|+.|.
T Consensus 112 ~~~~~~r~lIiGAG~ag~ 129 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGD 129 (588)
T ss_pred cccCCCceEEEcCchHHH
Confidence 456778999999999874
No 210
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=26.71 E-value=39 Score=25.44 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=9.3
Q ss_pred CEEEEEeCCcce
Q psy4594 64 KKVLIFTVGGST 75 (82)
Q Consensus 64 k~VLIiGGGDGg 75 (82)
.+|+|||||--|
T Consensus 31 ~dvvIIGgGi~G 42 (407)
T TIGR01373 31 YDVIIVGGGGHG 42 (407)
T ss_pred CCEEEECCcHHH
Confidence 489999999433
No 211
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=26.62 E-value=25 Score=30.98 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.2
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
++.++|+|||||-.|.
T Consensus 428 ~~~~kVaIIG~GPAGL 443 (1006)
T PRK12775 428 KKLGKVAICGSGPAGL 443 (1006)
T ss_pred CCCCEEEEECCCHHHH
Confidence 4568999999998765
No 212
>PRK13054 lipid kinase; Reviewed
Probab=26.53 E-value=37 Score=25.03 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=9.9
Q ss_pred CEEEEEeCCcce
Q psy4594 64 KKVLIFTVGGST 75 (82)
Q Consensus 64 k~VLIiGGGDGg 75 (82)
-+++|+.||||.
T Consensus 57 ~d~vvv~GGDGT 68 (300)
T PRK13054 57 VATVIAGGGDGT 68 (300)
T ss_pred CCEEEEECCccH
Confidence 368889999996
No 213
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=26.43 E-value=36 Score=28.17 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
++-+|+|||||--|+
T Consensus 70 ~~~DVvVIGGGi~Ga 84 (627)
T PLN02464 70 EPLDVLVVGGGATGA 84 (627)
T ss_pred CccCEEEECCCHHHH
Confidence 446899999996553
No 214
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=26.38 E-value=39 Score=27.80 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.3
Q ss_pred hcccccccCCCCCEEEEEeC
Q psy4594 52 IAFLPLCSHPNPKKVLIFTV 71 (82)
Q Consensus 52 lvh~~~~~h~~pk~VLIiGG 71 (82)
+..-|.|+..+-++|||.||
T Consensus 304 ~~~~~~~~~~~~~~VLVTGa 323 (660)
T PRK08125 304 LNSKPACSAKRRTRVLILGV 323 (660)
T ss_pred ecccchhhhhcCCEEEEECC
Confidence 56678888889999999997
No 215
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=26.34 E-value=44 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.8
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||+|||+|+
T Consensus 178 ~~d~rV~iIaSGg 190 (284)
T PRK13366 178 DEDLNVQIWGTGG 190 (284)
T ss_pred CcCCCEEEEecCc
Confidence 4567899999987
No 216
>PRK12829 short chain dehydrogenase; Provisional
Probab=26.26 E-value=50 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=11.7
Q ss_pred CCCCEEEEEeCCcceeee
Q psy4594 61 PNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~r 78 (82)
-+.++|||+||. |++.+
T Consensus 9 ~~~~~vlItGa~-g~iG~ 25 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGR 25 (264)
T ss_pred cCCCEEEEeCCC-CcHHH
Confidence 456899999885 55433
No 217
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=26.19 E-value=53 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=11.5
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
...++++|+|.|.-+
T Consensus 21 ~~~~~v~i~G~G~~g 35 (86)
T cd05191 21 LKGKTVVVLGAGEVG 35 (86)
T ss_pred CCCCEEEEECCCHHH
Confidence 467899999997543
No 218
>KOG1335|consensus
Probab=26.06 E-value=34 Score=28.30 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.4
Q ss_pred CCCEEEEEeCCcceee
Q psy4594 62 NPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~ 77 (82)
+--+|+|||||-||-.
T Consensus 38 ~d~DvvvIG~GpGGyv 53 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYV 53 (506)
T ss_pred ccCCEEEECCCCchHH
Confidence 5678999999999853
No 219
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=26.05 E-value=22 Score=28.92 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=12.3
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
.+.|+|||+|+| |++|.
T Consensus 377 ~~~k~vlIlGaG--GagrA 393 (529)
T PLN02520 377 LAGKLFVVIGAG--GAGKA 393 (529)
T ss_pred CCCCEEEEECCc--HHHHH
Confidence 356899999996 55543
No 220
>PLN02487 zeta-carotene desaturase
Probab=26.02 E-value=39 Score=27.92 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
.+++|+|||||-+|.
T Consensus 74 ~~~~v~iiG~G~~Gl 88 (569)
T PLN02487 74 PKLKVAIIGAGLAGM 88 (569)
T ss_pred CCCeEEEECCCHHHH
Confidence 345999999997664
No 221
>PRK08618 ornithine cyclodeaminase; Validated
Probab=25.84 E-value=49 Score=24.92 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=25.2
Q ss_pred EEecCCCCe-EEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCc
Q psy4594 22 SSNRKEFGT-ALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73 (82)
Q Consensus 22 v~~~~~~G~-~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGD 73 (82)
+++.+. |. ..++||..-.+-+-- .-+- ++ .-.++.+++++|+|||.|-
T Consensus 89 l~d~~t-G~p~a~~d~~~lT~~RTa-a~sa-la-~~~la~~~~~~v~iiGaG~ 137 (325)
T PRK08618 89 LSDFET-GEVLAILDGTYLTQIRTG-ALSG-VA-TKYLAREDAKTLCLIGTGG 137 (325)
T ss_pred EEeCCC-CceEEEEccchhhhhhHH-HHHH-HH-HHHhcCCCCcEEEEECCcH
Confidence 444433 44 335666655444432 1111 11 1124557899999999874
No 222
>PRK00861 putative lipid kinase; Reviewed
Probab=25.67 E-value=41 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.1
Q ss_pred CEEEEEeCCccee
Q psy4594 64 KKVLIFTVGGSTV 76 (82)
Q Consensus 64 k~VLIiGGGDGg~ 76 (82)
.+++|+.||||.+
T Consensus 58 ~d~vv~~GGDGTl 70 (300)
T PRK00861 58 AELIIASGGDGTL 70 (300)
T ss_pred CCEEEEECChHHH
Confidence 3688889999964
No 223
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=25.67 E-value=45 Score=22.89 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.4
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
..+++++|+||.|.+
T Consensus 96 ~~~~~v~iagG~Gia 110 (222)
T cd06194 96 GEGPLLLVGAGTGLA 110 (222)
T ss_pred CCCCEEEEecCcchh
Confidence 447899999999975
No 224
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=25.53 E-value=17 Score=28.60 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.8
Q ss_pred cchhhhhhcccccccCC
Q psy4594 45 EFSYSEMIAFLPLCSHP 61 (82)
Q Consensus 45 e~~YhE~lvh~~~~~h~ 61 (82)
+.+.||.+-|.||+++|
T Consensus 163 PDi~HEl~GHvPmLadp 179 (332)
T PF00351_consen 163 PDIFHELFGHVPMLADP 179 (332)
T ss_dssp --HHHHHHHTHHHHTSH
T ss_pred CccHhHHhccchhhhcH
Confidence 35679999999999886
No 225
>PLN02612 phytoene desaturase
Probab=25.44 E-value=31 Score=28.08 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.3
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
.+++|+|||||-+|.
T Consensus 92 ~~~~v~iiG~G~~Gl 106 (567)
T PLN02612 92 KPLKVVIAGAGLAGL 106 (567)
T ss_pred CCCCEEEECCCHHHH
Confidence 568999999997664
No 226
>PRK07060 short chain dehydrogenase; Provisional
Probab=25.23 E-value=59 Score=22.06 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=9.9
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
+.+++||.|++.|
T Consensus 8 ~~~~~lItGa~g~ 20 (245)
T PRK07060 8 SGKSVLVTGASSG 20 (245)
T ss_pred CCCEEEEeCCcch
Confidence 5589999998643
No 227
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=25.20 E-value=30 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=15.6
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
+..++||=||.|.|..+++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~ 80 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIP 80 (230)
T ss_pred CCCCEEEEEeCCCCHHHHH
Confidence 4678999999999987654
No 228
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.16 E-value=42 Score=23.78 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhccccc--ccCCCCCEEEEEeCCcceeee
Q psy4594 17 PFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPL--CSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 17 ~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~--~~h~~pk~VLIiGGGDGg~~r 78 (82)
|-|.|+=..+.+|.-+..+-.+-+...+ +|.++...+ ....++.+||=+|.|.|..+.
T Consensus 65 p~~~i~g~~~f~~~~~~~~~~~lipr~~----te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~ 124 (275)
T PRK09328 65 PLQYILGEAEFWGLDFKVSPGVLIPRPE----TEELVEWALEALLLKEPLRVLDLGTGSGAIAL 124 (275)
T ss_pred CHHHHceeceEcCcEEEECCCceeCCCC----cHHHHHHHHHhccccCCCEEEEEcCcHHHHHH
Confidence 4444433344456666555444433333 344444333 122456799999999997643
No 229
>PRK07340 ornithine cyclodeaminase; Validated
Probab=24.95 E-value=53 Score=24.64 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.4
Q ss_pred cCCCCCEEEEEeCCc
Q psy4594 59 SHPNPKKVLIFTVGG 73 (82)
Q Consensus 59 ~h~~pk~VLIiGGGD 73 (82)
+.+++++|+|||.|-
T Consensus 121 a~~~~~~v~IiGaG~ 135 (304)
T PRK07340 121 APAPPGDLLLIGTGV 135 (304)
T ss_pred CCCCCCEEEEECCcH
Confidence 446889999999974
No 230
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=24.87 E-value=48 Score=23.00 Aligned_cols=14 Identities=7% Similarity=0.302 Sum_probs=12.1
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.+++|+|+||.|.+
T Consensus 103 ~~~~l~iagG~Gia 116 (232)
T cd06212 103 DRPIVLIGGGSGMA 116 (232)
T ss_pred CCcEEEEecCcchh
Confidence 46999999999975
No 231
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=24.86 E-value=44 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=12.3
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
+.+++++|+||-|.+
T Consensus 105 ~~~~~vliagG~GIt 119 (210)
T cd06186 105 SYDNVLLVAGGSGIT 119 (210)
T ss_pred hCCeEEEEeccccHh
Confidence 357999999999865
No 232
>KOG3974|consensus
Probab=24.67 E-value=34 Score=26.69 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=34.2
Q ss_pred cCCCCeEEEEcCceeeeccccch--------------------------h-hhhhcccccccCCC----------CCEEE
Q psy4594 25 RKEFGTALILDGIIQCTEFDEFS--------------------------Y-SEMIAFLPLCSHPN----------PKKVL 67 (82)
Q Consensus 25 ~~~~G~~L~LDg~~q~se~de~~--------------------------Y-hE~lvh~~~~~h~~----------pk~VL 67 (82)
..+.||+.++-|+.-.|-+--|. | -|.||||-|-. ++ .-+|+
T Consensus 27 KGq~GrvgViGGc~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~-~~av~~i~k~L~Rlhav 105 (306)
T KOG3974|consen 27 KGQSGRVGVIGGCLEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQ-ENAVDIIEKLLQRLHAV 105 (306)
T ss_pred CCCccceEEEcccccccCccHHHHHHHHHhccceeeeeechhHHHHHhhcCCceeecccccC-CchHhHHHHHHhheeEE
Confidence 45678899988887766543221 4 38899987753 32 33799
Q ss_pred EEeCCcce
Q psy4594 68 IFTVGGST 75 (82)
Q Consensus 68 IiGGGDGg 75 (82)
|||-|-|-
T Consensus 106 VIGPGLGR 113 (306)
T KOG3974|consen 106 VIGPGLGR 113 (306)
T ss_pred EECCCCCC
Confidence 99998774
No 233
>PRK04148 hypothetical protein; Provisional
Probab=24.64 E-value=28 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=12.3
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
.+.++||+||-|-|.
T Consensus 15 ~~~~kileIG~GfG~ 29 (134)
T PRK04148 15 GKNKKIVELGIGFYF 29 (134)
T ss_pred ccCCEEEEEEecCCH
Confidence 355899999999875
No 234
>KOG4469|consensus
Probab=24.64 E-value=91 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.7
Q ss_pred CeEEEEcCceeeeccccchhhhhh
Q psy4594 29 GTALILDGIIQCTEFDEFSYSEMI 52 (82)
Q Consensus 29 G~~L~LDg~~q~se~de~~YhE~l 52 (82)
-++||+|=.+--.|+..+.|.|.|
T Consensus 96 pkilfcdlrldpgesksysysevl 119 (391)
T KOG4469|consen 96 PKILFCDLRLDPGESKSYSYSEVL 119 (391)
T ss_pred CceEEEEeecCCCccccccceeee
Confidence 368999999999999999999865
No 235
>KOG1367|consensus
Probab=24.64 E-value=23 Score=28.45 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=32.7
Q ss_pred eEEEEcCceeeeccccchh-hhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 30 TALILDGIIQCTEFDEFSY-SEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 30 ~~L~LDg~~q~se~de~~Y-hE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
+..+-||-.=..|.+.|.- +|+|+. .+......-.+-||||||-.++.
T Consensus 330 KtIvWNGP~GvfE~~~Fa~GTeal~d-~~v~~t~~G~~tiiGGGDTata~ 378 (416)
T KOG1367|consen 330 KTIVWNGPPGVFEFEKFAAGTEALMD-ALVKLTGKGVTTIIGGGDTATAC 378 (416)
T ss_pred hEEEecCCCcccchhhhhhhHHHHHH-HHHHHhcCCcEEEEcCCcHHHHH
Confidence 3456677666677776653 677776 34444566688999999977654
No 236
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=24.42 E-value=51 Score=23.04 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.5
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
..++++.|+||.|.+
T Consensus 100 ~~~~~vlIagGtGia 114 (241)
T cd06195 100 PGKRLWLLATGTGIA 114 (241)
T ss_pred CCceEEEEeeccchh
Confidence 357999999999975
No 237
>PRK13055 putative lipid kinase; Reviewed
Probab=24.40 E-value=44 Score=25.21 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=9.3
Q ss_pred EEEEEeCCcce
Q psy4594 65 KVLIFTVGGST 75 (82)
Q Consensus 65 ~VLIiGGGDGg 75 (82)
+++|+.||||.
T Consensus 61 d~vvv~GGDGT 71 (334)
T PRK13055 61 DLIIAAGGDGT 71 (334)
T ss_pred CEEEEECCCCH
Confidence 58888899996
No 238
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.38 E-value=30 Score=24.77 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=11.6
Q ss_pred CCCEEEEEeCC-cceeee
Q psy4594 62 NPKKVLIFTVG-GSTVQY 78 (82)
Q Consensus 62 ~pk~VLIiGGG-DGg~~r 78 (82)
+.|.|||.||+ .+|+-+
T Consensus 9 ~~k~~lItGas~~~GIG~ 26 (272)
T PRK08159 9 AGKRGLILGVANNRSIAW 26 (272)
T ss_pred cCCEEEEECCCCCCcHHH
Confidence 35789999986 355433
No 239
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=24.26 E-value=65 Score=23.75 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=24.2
Q ss_pred CCCCeeE-EEecC-----CCCeEEEEcCceeeeccccch
Q psy4594 15 NKPFYPS-SSNRK-----EFGTALILDGIIQCTEFDEFS 47 (82)
Q Consensus 15 ~s~yQ~i-v~~~~-----~~G~~L~LDg~~q~se~de~~ 47 (82)
...||+| |.|.. ..|+.|.++ .-.++..||.+
T Consensus 81 d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeDLDEii 118 (220)
T PF14633_consen 81 DGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYEDLDEII 118 (220)
T ss_dssp TTEEEEEEEEEECSSSTTS-SSEEEET-TEEESSHHHHH
T ss_pred CCcEEEEEEEECCCcCccccCcEEEEC-CeEECCHHHHH
Confidence 3468999 88865 478999997 67788888866
No 240
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=24.23 E-value=27 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.5
Q ss_pred CCCEEEEEeCCcceeee
Q psy4594 62 NPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~r 78 (82)
++.+||-+|.|.|..+.
T Consensus 30 ~~~~vLDiGcG~G~~a~ 46 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSL 46 (195)
T ss_pred CCCcEEEeCCCCCHHHH
Confidence 57899999999998654
No 241
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=24.20 E-value=43 Score=26.05 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.8
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..+||||||+||-
T Consensus 238 ~d~rVlIIaSGdL 250 (335)
T PRK13363 238 EDARVAVIASGGL 250 (335)
T ss_pred cCCCEEEEEeCcc
Confidence 4589999999984
No 242
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=24.16 E-value=69 Score=22.11 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=15.1
Q ss_pred cCCCCCEEEEEeC-----Ccceee
Q psy4594 59 SHPNPKKVLIFTV-----GGSTVQ 77 (82)
Q Consensus 59 ~h~~pk~VLIiGG-----GDGg~~ 77 (82)
.....+.|||+|+ |||+++
T Consensus 83 ~~g~~~~~lv~~~e~~~~gdGAaa 106 (254)
T cd00327 83 QNGKADIVLAGGSEEFVFGDGAAA 106 (254)
T ss_pred HCCCCCEEEEEecceeeecceEEE
Confidence 3456789999999 888876
No 243
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=24.10 E-value=54 Score=22.64 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=8.6
Q ss_pred CCCEEEEEeCC
Q psy4594 62 NPKKVLIFTVG 72 (82)
Q Consensus 62 ~pk~VLIiGGG 72 (82)
+.|+|||.||.
T Consensus 9 ~~k~vlItGa~ 19 (255)
T PRK07523 9 TGRRALVTGSS 19 (255)
T ss_pred CCCEEEEECCc
Confidence 45789999974
No 244
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=24.08 E-value=36 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.5
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
..+++||-+|.|.|..+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~ 56 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIE 56 (223)
T ss_pred CCCCeEEEeCCCCChhHHH
Confidence 4678999999999987543
No 245
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=23.99 E-value=26 Score=28.95 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCCcceee
Q psy4594 61 PNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~ 77 (82)
++.-+|||+|||-.|.+
T Consensus 30 ~~~~dVlIVGAGPaGL~ 46 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLT 46 (634)
T ss_pred CCCCCEEEECCCHHHHH
Confidence 44568999999987653
No 246
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=23.84 E-value=81 Score=22.62 Aligned_cols=47 Identities=13% Similarity=-0.067 Sum_probs=26.0
Q ss_pred eEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceee
Q psy4594 30 TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQ 77 (82)
Q Consensus 30 ~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~ 77 (82)
..+.+|-.+-|.+.. +.-+.++.+.-...-.+.++||-+|.|.|..+
T Consensus 88 ~~i~i~p~~afgtg~-h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~ 134 (250)
T PRK00517 88 INIELDPGMAFGTGT-HPTTRLCLEALEKLVLPGKTVLDVGCGSGILA 134 (250)
T ss_pred EEEEECCCCccCCCC-CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHH
Confidence 355666666665544 22222222211111246789999999998643
No 247
>PLN02529 lysine-specific histone demethylase 1
Probab=23.77 E-value=24 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
.++++|+|||+|-+|.
T Consensus 158 ~~~~~v~viGaG~aGl 173 (738)
T PLN02529 158 GTEGSVIIVGAGLAGL 173 (738)
T ss_pred cCCCCEEEECcCHHHH
Confidence 3568999999998765
No 248
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=23.65 E-value=39 Score=26.91 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=12.5
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
+.++|||+|.|+.+.
T Consensus 142 ~~rrVLIvGaG~~g~ 156 (463)
T PRK10124 142 NKRMVAVAGDLPAGQ 156 (463)
T ss_pred CCCcEEEEECCHHHH
Confidence 567899999998763
No 249
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.55 E-value=44 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.3
Q ss_pred CCCCEEEEEeCCccee
Q psy4594 61 PNPKKVLIFTVGGSTV 76 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~ 76 (82)
.+| .|||||.|.-+.
T Consensus 51 ~~p-eiliiGTG~~~~ 65 (109)
T cd05560 51 LQP-EVILLGTGERQR 65 (109)
T ss_pred cCC-CEEEEecCCCCC
Confidence 345 499999998764
No 250
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=23.49 E-value=29 Score=27.01 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=15.6
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
+..++||-||.|.|+.+..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~ 184 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARY 184 (383)
T ss_pred CCCCEEEEeCCCccHHHHH
Confidence 4567999999999988754
No 251
>KOG0029|consensus
Probab=23.46 E-value=31 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.2
Q ss_pred cCCCCCEEEEEeCCccee
Q psy4594 59 SHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 59 ~h~~pk~VLIiGGGDGg~ 76 (82)
.....++|.|||+|-.|.
T Consensus 11 ~~~~~~~VIVIGAGiaGL 28 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGL 28 (501)
T ss_pred cccCCCcEEEECCcHHHH
Confidence 345678999999997764
No 252
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=23.41 E-value=46 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=11.1
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.=+.+|.+||||.+
T Consensus 58 ~~D~via~GGDGTv 71 (301)
T COG1597 58 GYDTVIAAGGDGTV 71 (301)
T ss_pred CCCEEEEecCcchH
Confidence 45789999999953
No 253
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=23.12 E-value=43 Score=27.49 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=9.7
Q ss_pred CEEEEEeCCcce
Q psy4594 64 KKVLIFTVGGST 75 (82)
Q Consensus 64 k~VLIiGGGDGg 75 (82)
.+|+|||||--|
T Consensus 261 ~dVvIIGaGIaG 272 (662)
T PRK01747 261 RDAAIIGGGIAG 272 (662)
T ss_pred CCEEEECccHHH
Confidence 489999999544
No 254
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=23.11 E-value=47 Score=22.98 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=11.8
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.+++++|+||.|.+
T Consensus 97 ~~~illIagG~Gia 110 (232)
T cd06190 97 DRDIVCIAGGSGLA 110 (232)
T ss_pred CCcEEEEeeCcCHH
Confidence 57899999999865
No 255
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=23.10 E-value=50 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.5
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.++|||||+||..-
T Consensus 159 ~~~vlii~SgdlsH 172 (256)
T cd07951 159 GRRVALIASGDLSH 172 (256)
T ss_pred CCcEEEEEeccccc
Confidence 57899999998654
No 256
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=23.06 E-value=56 Score=22.67 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=12.1
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.+++++|+||.|.+
T Consensus 108 ~~~~llia~GtGia 121 (241)
T cd06214 108 ARHYVLFAAGSGIT 121 (241)
T ss_pred CCcEEEEecccChh
Confidence 57999999999965
No 257
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=22.92 E-value=31 Score=24.99 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.2
Q ss_pred CCEEEEEeCCcc
Q psy4594 63 PKKVLIFTVGGS 74 (82)
Q Consensus 63 pk~VLIiGGGDG 74 (82)
.+||+|||+|+-
T Consensus 173 ~~rv~vi~SG~l 184 (272)
T PF02900_consen 173 DERVAVIASGGL 184 (272)
T ss_dssp GGCEEEEEEE-S
T ss_pred CCCEEEEEeCCc
Confidence 679999998863
No 258
>KOG2104|consensus
Probab=22.87 E-value=66 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=27.5
Q ss_pred CCCCeeE--EEec------CCCCeEEEEcCceeeeccccchhhhhh
Q psy4594 15 NKPFYPS--SSNR------KEFGTALILDGIIQCTEFDEFSYSEMI 52 (82)
Q Consensus 15 ~s~yQ~i--v~~~------~~~G~~L~LDg~~q~se~de~~YhE~l 52 (82)
.-|||++ .+++ ..-|.+.++-|.+++.|.-...+|.|.
T Consensus 57 sLpFqkiqh~IttvD~QPt~~g~ilv~V~G~Lk~dEd~~~~FsQvF 102 (126)
T KOG2104|consen 57 SLPFQKIQHSITTVDSQPTPDGGILVMVVGQLKLDEDPILRFSQVF 102 (126)
T ss_pred cCChhhhhceeeecccccCCCCcEEEEEeeeeeeccCCccceeeEE
Confidence 3589988 6655 344667789999999977666677754
No 259
>PRK10628 LigB family dioxygenase; Provisional
Probab=22.73 E-value=46 Score=24.88 Aligned_cols=12 Identities=8% Similarity=0.421 Sum_probs=9.5
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
.-+.|||||+|.
T Consensus 138 R~~gvLIigSG~ 149 (246)
T PRK10628 138 RDEGIMLVASGN 149 (246)
T ss_pred ccCCEEEEecCc
Confidence 456799999985
No 260
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=22.71 E-value=60 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=9.8
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
..|+|||+||..|
T Consensus 10 ~~k~vlVtG~s~g 22 (255)
T PRK06113 10 DGKCAIITGAGAG 22 (255)
T ss_pred CCCEEEEECCCch
Confidence 3589999997654
No 261
>KOG4716|consensus
Probab=22.69 E-value=35 Score=27.96 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=12.4
Q ss_pred CEEEEEeCCcceeee
Q psy4594 64 KKVLIFTVGGSTVQY 78 (82)
Q Consensus 64 k~VLIiGGGDGg~~r 78 (82)
=+..|||||.||.+.
T Consensus 20 yDLIviGgGSgGLac 34 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLAC 34 (503)
T ss_pred ccEEEEcCCcchhhH
Confidence 468899999999764
No 262
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=22.66 E-value=52 Score=22.34 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=12.2
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
+.++++.|+||.|.+
T Consensus 97 ~~~~~v~ia~GtGia 111 (211)
T cd06185 97 AARRHLLIAGGIGIT 111 (211)
T ss_pred CCCcEEEEeccchHh
Confidence 457899999999865
No 263
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.57 E-value=72 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=18.9
Q ss_pred cccchhhhhhcccccccCCCCCEEEEEeCCccee
Q psy4594 43 FDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 43 ~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~ 76 (82)
..+.++..||-+.. -....+||-||+|.|-.
T Consensus 56 s~P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~ 86 (209)
T PF01135_consen 56 SAPSMVARMLEALD---LKPGDRVLEIGTGSGYQ 86 (209)
T ss_dssp --HHHHHHHHHHTT---C-TT-EEEEES-TTSHH
T ss_pred hHHHHHHHHHHHHh---cCCCCEEEEecCCCcHH
Confidence 34457777777654 34567999999998854
No 264
>PRK13057 putative lipid kinase; Reviewed
Probab=22.50 E-value=42 Score=24.54 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=9.2
Q ss_pred EEEEEeCCccee
Q psy4594 65 KVLIFTVGGSTV 76 (82)
Q Consensus 65 ~VLIiGGGDGg~ 76 (82)
+++|+.||||.+
T Consensus 52 d~iiv~GGDGTv 63 (287)
T PRK13057 52 DLVIVGGGDGTL 63 (287)
T ss_pred CEEEEECchHHH
Confidence 577888889963
No 265
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=22.47 E-value=34 Score=25.46 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=13.5
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
....+||-||.|-|+.+..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~ 79 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIY 79 (273)
T ss_dssp -TT-EEEEES-TTSHHHHH
T ss_pred CCCCEEEEeCCCccHHHHH
Confidence 4678999999999987653
No 266
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=22.18 E-value=68 Score=22.09 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=12.1
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.+++++|+||-|.+
T Consensus 107 ~~~~vliagG~Gia 120 (235)
T cd06217 107 GDPVVLLAGGSGIV 120 (235)
T ss_pred CceEEEEecCcCcc
Confidence 47899999999976
No 267
>PRK08291 ectoine utilization protein EutC; Validated
Probab=22.16 E-value=67 Score=24.23 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=12.3
Q ss_pred cCCCCCEEEEEeCCc
Q psy4594 59 SHPNPKKVLIFTVGG 73 (82)
Q Consensus 59 ~h~~pk~VLIiGGGD 73 (82)
+.+++++++|||.|-
T Consensus 128 a~~~~~~v~IiGaG~ 142 (330)
T PRK08291 128 AREDASRAAVIGAGE 142 (330)
T ss_pred CCCCCCEEEEECCCH
Confidence 457789999999874
No 268
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=22.13 E-value=2e+02 Score=17.45 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=26.9
Q ss_pred CCCeeE--EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcc
Q psy4594 16 KPFYPS--SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74 (82)
Q Consensus 16 s~yQ~i--v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDG 74 (82)
..++++ +++ .-...|++||....+...... ....+...+.||+..+
T Consensus 85 ~~W~~l~~~~~--~~~~~lyvnG~~~~~~~~~~~-----------~~~~~~~~~~iG~~~~ 132 (157)
T PF13385_consen 85 NKWHHLALTYD--GSTVTLYVNGELVGSSTIPSN-----------ISLNSNGPLFIGGSGG 132 (157)
T ss_dssp T-EEEEEEEEE--TTEEEEEETTEEETTCTEESS-----------SSTTSCCEEEESS-ST
T ss_pred CCEEEEEEEEE--CCeEEEEECCEEEEeEeccCC-----------cCCCCcceEEEeecCC
Confidence 556677 444 334788999997766544322 1124556788888653
No 269
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=22.10 E-value=62 Score=26.05 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.4
Q ss_pred CCCCEEEEEeCCcc
Q psy4594 61 PNPKKVLIFTVGGS 74 (82)
Q Consensus 61 ~~pk~VLIiGGGDG 74 (82)
..+|+|||+|+..|
T Consensus 39 ~ggK~aLVTGaSsG 52 (398)
T PRK13656 39 NGPKKVLVIGASSG 52 (398)
T ss_pred CCCCEEEEECCCch
Confidence 35799999999765
No 270
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=22.06 E-value=61 Score=22.25 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=12.2
Q ss_pred CCEEEEEeCCccee
Q psy4594 63 PKKVLIFTVGGSTV 76 (82)
Q Consensus 63 pk~VLIiGGGDGg~ 76 (82)
.+++++|+||.|.+
T Consensus 103 ~~~~vlIagG~Gia 116 (231)
T cd06215 103 ADKLLLLSAGSGIT 116 (231)
T ss_pred CCcEEEEecCcCcc
Confidence 57999999999965
No 271
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=22.00 E-value=61 Score=21.84 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.5
Q ss_pred CCCEEEEEeCCccee
Q psy4594 62 NPKKVLIFTVGGSTV 76 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~ 76 (82)
..++++.|+||-|.+
T Consensus 96 ~~~~~v~ia~G~Gia 110 (223)
T cd00322 96 ESGPVVLIAGGIGIT 110 (223)
T ss_pred cCCcEEEEecCCchh
Confidence 457899999999875
No 272
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=21.97 E-value=59 Score=25.17 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=10.2
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
.+++|+|||.|.
T Consensus 166 ~~~~VlViGaG~ 177 (370)
T TIGR00518 166 EPGDVTIIGGGV 177 (370)
T ss_pred CCceEEEEcCCH
Confidence 678899999984
No 273
>KOG2844|consensus
Probab=21.76 E-value=50 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.3
Q ss_pred cCCCCCEEEEEeCCccee
Q psy4594 59 SHPNPKKVLIFTVGGSTV 76 (82)
Q Consensus 59 ~h~~pk~VLIiGGGDGg~ 76 (82)
.-|++.+|.|||||.+++
T Consensus 35 ~~~~~A~vvViggG~~g~ 52 (856)
T KOG2844|consen 35 PLPSTADVVVIGGGSLGC 52 (856)
T ss_pred cCCCcccEEEEcCCchhH
Confidence 346788999999998764
No 274
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=21.76 E-value=55 Score=25.06 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=10.1
Q ss_pred CCEEEEEeCCcc
Q psy4594 63 PKKVLIFTVGGS 74 (82)
Q Consensus 63 pk~VLIiGGGDG 74 (82)
.+||+|||+||-
T Consensus 166 d~rV~VIaSGdL 177 (310)
T cd07365 166 DKRVLFLGSGGL 177 (310)
T ss_pred CCCEEEEEcCcc
Confidence 568999999984
No 275
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=21.74 E-value=56 Score=26.47 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=10.7
Q ss_pred CCCCEEEEEeCCc
Q psy4594 61 PNPKKVLIFTVGG 73 (82)
Q Consensus 61 ~~pk~VLIiGGGD 73 (82)
+..+||||||+|+
T Consensus 178 ~~d~rVlIIgSGg 190 (420)
T PRK13367 178 PEDLKVAIVATGG 190 (420)
T ss_pred CcCCCEEEEEeCc
Confidence 4567999999986
No 276
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=21.38 E-value=34 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCEEEEEeCCcceeeee
Q psy4594 62 NPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 62 ~pk~VLIiGGGDGg~~rE 79 (82)
+.+++|=||.|||++...
T Consensus 94 ~~~~lLDlGAGdG~VT~~ 111 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER 111 (265)
T ss_pred cCCceEEecCCCcHHHHH
Confidence 568999999999987653
No 277
>KOG1399|consensus
Probab=21.34 E-value=54 Score=26.46 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=11.8
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
+.|+|||||.|.-|
T Consensus 185 ~~k~VlVIG~g~SG 198 (448)
T KOG1399|consen 185 RDKVVLVVGCGNSG 198 (448)
T ss_pred cCceEEEECCCccH
Confidence 45899999999865
No 278
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=21.22 E-value=1.4e+02 Score=23.88 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=30.0
Q ss_pred CcccEEEccCCCCee-EEEecCCCCeEEEEcCceee
Q psy4594 6 KKVRVLSYPNKPFYP-SSSNRKEFGTALILDGIIQC 40 (82)
Q Consensus 6 ~~~~vl~~~~s~yQ~-iv~~~~~~G~~L~LDg~~q~ 40 (82)
.+.+++|+.+.|... ||+.-+..|-.|..||.-|-
T Consensus 28 ~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~Qr 63 (394)
T PF03676_consen 28 PKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQR 63 (394)
T ss_pred CceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcE
Confidence 568899999999988 49999999999999987553
No 279
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.21 E-value=67 Score=24.37 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=12.0
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
++.+.|||+||+-|.
T Consensus 183 ~~~~~iLv~GGS~Ga 197 (352)
T PRK12446 183 RKKPVITIMGGSLGA 197 (352)
T ss_pred CCCcEEEEECCccch
Confidence 556789999998774
No 280
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=21.12 E-value=26 Score=25.66 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.6
Q ss_pred CEEEEEeCCccee
Q psy4594 64 KKVLIFTVGGSTV 76 (82)
Q Consensus 64 k~VLIiGGGDGg~ 76 (82)
-+|+|||||-.|.
T Consensus 22 ~DVvIVGgGpAGL 34 (254)
T TIGR00292 22 SDVIIVGAGPSGL 34 (254)
T ss_pred CCEEEECCCHHHH
Confidence 3799999997664
No 281
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.11 E-value=53 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=21.8
Q ss_pred hhhhcccccccCCCCCEEEEEeCCcceeee
Q psy4594 49 SEMIAFLPLCSHPNPKKVLIFTVGGSTVQY 78 (82)
Q Consensus 49 hE~lvh~~~~~h~~pk~VLIiGGGDGg~~r 78 (82)
.|+-+..-+-...+|+|+.|++.|.|..+.
T Consensus 75 ~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~ 104 (286)
T PRK06027 75 EEFEMDWRLLDSAERKRVVILVSKEDHCLG 104 (286)
T ss_pred HHhCCEEEEcccccCcEEEEEEcCCCCCHH
Confidence 344445555566789999999999987654
No 282
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.99 E-value=41 Score=23.66 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=9.8
Q ss_pred CCCEEEEEeCCc
Q psy4594 62 NPKKVLIFTVGG 73 (82)
Q Consensus 62 ~pk~VLIiGGGD 73 (82)
+.|.|||.||+.
T Consensus 9 ~~k~~lItGas~ 20 (258)
T PRK07533 9 AGKRGLVVGIAN 20 (258)
T ss_pred CCCEEEEECCCC
Confidence 468999999876
No 283
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=20.98 E-value=49 Score=26.82 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=10.5
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..-+|+|||||--|
T Consensus 44 ~~~DVvIIGGGI~G 57 (497)
T PTZ00383 44 DVYDVVIVGGGVTG 57 (497)
T ss_pred CcccEEEECccHHH
Confidence 34699999999433
No 284
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=20.97 E-value=48 Score=27.95 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=10.9
Q ss_pred EEEEEeCCcceee
Q psy4594 65 KVLIFTVGGSTVQ 77 (82)
Q Consensus 65 ~VLIiGGGDGg~~ 77 (82)
+|+|||+|-||.+
T Consensus 118 DviVIG~G~gG~~ 130 (659)
T PTZ00153 118 DVGIIGCGVGGHA 130 (659)
T ss_pred CEEEECCCHHHHH
Confidence 6999999988753
No 285
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.89 E-value=77 Score=22.42 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.9
Q ss_pred CCCCCEEEEEeCC
Q psy4594 60 HPNPKKVLIFTVG 72 (82)
Q Consensus 60 h~~pk~VLIiGGG 72 (82)
++..|.|||.||+
T Consensus 7 ~~~~~~vlVtGa~ 19 (274)
T PRK07775 7 HPDRRPALVAGAS 19 (274)
T ss_pred CCCCCEEEEECCC
Confidence 4666889999874
No 286
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=20.87 E-value=37 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCCEEEEEeCCcceeeee
Q psy4594 61 PNPKKVLIFTVGGSTVQYS 79 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg~~rE 79 (82)
.++++||=||.|.|..++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~ 48 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTEL 48 (258)
T ss_pred cCCCEEEEEcccCCHHHHH
Confidence 4578999999999976654
No 287
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=20.83 E-value=51 Score=25.59 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.9
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
..++|||+|.|+.+
T Consensus 124 ~~~rvLIvGag~~a 137 (445)
T TIGR03025 124 NLRRVLIVGTGEAA 137 (445)
T ss_pred CCCcEEEEECCHHH
Confidence 56899999999865
No 288
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=20.81 E-value=2e+02 Score=17.11 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcc
Q psy4594 16 KPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74 (82)
Q Consensus 16 s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDG 74 (82)
..|.+|.+....-.-.|.+|+....+........ ...++..-+.|||-.-
T Consensus 54 g~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~---------~~~~~~~~l~iGg~~~ 103 (128)
T PF02210_consen 54 GQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS---------DSLDPDGSLYIGGLPE 103 (128)
T ss_dssp SSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH---------HCBESEEEEEESSTTT
T ss_pred cceeEEEEEEeeeeEEEEecCccceEEeccccce---------ecccCCCCEEEecccC
Confidence 3466674444443567888888777766643322 1233445577777543
No 289
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=20.66 E-value=1e+02 Score=23.06 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=19.9
Q ss_pred CCCcccEEEccCCCCeeE-EEecCC
Q psy4594 4 DDKKVRVLSYPNKPFYPS-SSNRKE 27 (82)
Q Consensus 4 ~~~~~~vl~~~~s~yQ~i-v~~~~~ 27 (82)
+..+.+++.++.|.+|+| ++++..
T Consensus 183 ~~GNlrlLl~eGss~Qei~vVTTa~ 207 (227)
T COG4031 183 ARGNLRLLLSEGSSVQEIRVVTTAG 207 (227)
T ss_pred CCCCEEEEeecCCceeEEEEEEeec
Confidence 456788999999999999 888743
No 290
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=20.65 E-value=57 Score=26.69 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.7
Q ss_pred CEEEEEeCCc
Q psy4594 64 KKVLIFTVGG 73 (82)
Q Consensus 64 k~VLIiGGGD 73 (82)
++|||||+|-
T Consensus 329 erVlIIGSGG 338 (444)
T PRK13372 329 LNVQIWGTGG 338 (444)
T ss_pred CCEEEEecCc
Confidence 8999999874
No 291
>KOG1686|consensus
Probab=20.62 E-value=2e+02 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=25.5
Q ss_pred CCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeC
Q psy4594 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTV 71 (82)
Q Consensus 28 ~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGG 71 (82)
|+.+.+-.-++.++..| .+|.|-+.---....+.-.+||.+|+
T Consensus 27 favv~v~srq~kvs~gd-~iy~eg~~p~nv~d~i~l~kVlLvg~ 69 (151)
T KOG1686|consen 27 FAVVSVGSRQRKVSSGD-TIYTEGLKPKNVLDSIPLPKVLLVGP 69 (151)
T ss_pred cEEEEEcceeEEecCCC-eeeecCccccccccccccceEEEecC
Confidence 44444444444555555 68888776544444445568888886
No 292
>PRK13337 putative lipid kinase; Reviewed
Probab=20.62 E-value=67 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=10.3
Q ss_pred CEEEEEeCCccee
Q psy4594 64 KKVLIFTVGGSTV 76 (82)
Q Consensus 64 k~VLIiGGGDGg~ 76 (82)
.+++|+.||||.+
T Consensus 58 ~d~vvv~GGDGTl 70 (304)
T PRK13337 58 FDLVIAAGGDGTL 70 (304)
T ss_pred CCEEEEEcCCCHH
Confidence 3688899999963
No 293
>PRK05867 short chain dehydrogenase; Provisional
Probab=20.47 E-value=72 Score=22.06 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=10.2
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
+.|.|||.||+.|
T Consensus 8 ~~k~vlVtGas~g 20 (253)
T PRK05867 8 HGKRALITGASTG 20 (253)
T ss_pred CCCEEEEECCCch
Confidence 4689999998655
No 294
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.46 E-value=75 Score=21.63 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=8.5
Q ss_pred CCCEEEEEeC
Q psy4594 62 NPKKVLIFTV 71 (82)
Q Consensus 62 ~pk~VLIiGG 71 (82)
..++|||+||
T Consensus 27 ~~~~vlVlGg 36 (194)
T cd01078 27 KGKTAVVLGG 36 (194)
T ss_pred CCCEEEEECC
Confidence 5689999997
No 295
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=20.34 E-value=81 Score=19.69 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=12.3
Q ss_pred CCCCEEEEEeCCcce
Q psy4594 61 PNPKKVLIFTVGGST 75 (82)
Q Consensus 61 ~~pk~VLIiGGGDGg 75 (82)
.++-+||.+|.||.-
T Consensus 22 ~~~~~iLl~G~gD~R 36 (100)
T PF14737_consen 22 DEDLNILLLGCGDLR 36 (100)
T ss_pred CCCceEEEecCccHH
Confidence 466799999999963
No 296
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=20.23 E-value=78 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.0
Q ss_pred cCCCCCEEEEEeCCc
Q psy4594 59 SHPNPKKVLIFTVGG 73 (82)
Q Consensus 59 ~h~~pk~VLIiGGGD 73 (82)
+.+++++|+|||.|-
T Consensus 125 a~~~~~~v~iiGaG~ 139 (326)
T TIGR02992 125 AREDSSVVAIFGAGM 139 (326)
T ss_pred CCCCCcEEEEECCCH
Confidence 346789999999874
No 297
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.18 E-value=56 Score=24.05 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=9.7
Q ss_pred EEEEEeCCccee
Q psy4594 65 KVLIFTVGGSTV 76 (82)
Q Consensus 65 ~VLIiGGGDGg~ 76 (82)
+++|+.||||.+
T Consensus 66 d~vvv~GGDGTi 77 (306)
T PRK11914 66 DALVVVGGDGVI 77 (306)
T ss_pred CEEEEECCchHH
Confidence 678899999963
No 298
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.14 E-value=57 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=10.2
Q ss_pred CCEEEEEeCCcc
Q psy4594 63 PKKVLIFTVGGS 74 (82)
Q Consensus 63 pk~VLIiGGGDG 74 (82)
-+||+|||+|+-
T Consensus 179 d~rVaiIaSG~L 190 (329)
T cd07369 179 DLRVAFMATGGL 190 (329)
T ss_pred CCCEEEEEeCcc
Confidence 489999999874
No 299
>KOG2708|consensus
Probab=20.11 E-value=57 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=11.4
Q ss_pred cCCCCCEEEEEeC
Q psy4594 59 SHPNPKKVLIFTV 71 (82)
Q Consensus 59 ~h~~pk~VLIiGG 71 (82)
+|-..+.|||+||
T Consensus 251 Ah~~s~evLIVGG 263 (336)
T KOG2708|consen 251 AHCGSKEVLIVGG 263 (336)
T ss_pred hhcCCCcEEEEec
Confidence 5778899999998
No 300
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.08 E-value=71 Score=28.18 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=11.0
Q ss_pred CCCEEEEEeCCcc
Q psy4594 62 NPKKVLIFTVGGS 74 (82)
Q Consensus 62 ~pk~VLIiGGGDG 74 (82)
+.|+|||+|+|.-
T Consensus 553 ~~~kvlvlG~G~~ 565 (1050)
T TIGR01369 553 DKKKVLVLGSGPN 565 (1050)
T ss_pred CCceEEEecCccc
Confidence 5689999999975
No 301
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=20.03 E-value=68 Score=26.37 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=11.5
Q ss_pred CCCEEEEEeCCcce
Q psy4594 62 NPKKVLIFTVGGST 75 (82)
Q Consensus 62 ~pk~VLIiGGGDGg 75 (82)
.+++|||+|+|-=|
T Consensus 164 pg~kVlViGaG~iG 177 (509)
T PRK09424 164 PPAKVLVIGAGVAG 177 (509)
T ss_pred CCCEEEEECCcHHH
Confidence 68999999998533
No 302
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=20.01 E-value=49 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=9.9
Q ss_pred CCEEEEEeCCc
Q psy4594 63 PKKVLIFTVGG 73 (82)
Q Consensus 63 pk~VLIiGGGD 73 (82)
.+++.|||||+
T Consensus 95 ~~~i~IiGG~~ 105 (167)
T COG0262 95 GEDIFIIGGGE 105 (167)
T ss_pred CCeEEEEcCHH
Confidence 78999999985
Done!