RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4594
(82 letters)
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
elegans [TaxId: 6239]}
Length = 312
Score = 69.4 bits (169), Expect = 2e-16
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 25 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+G L+LDGI+Q TE DEFSY EM+A LP+ +HP+PK+VLI G
Sbjct: 69 STTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGD 117
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 312
Score = 65.6 bits (159), Expect = 5e-15
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
K FG LILD +Q TE DE+ Y E + + +HP PK+VLI G
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGAT 91
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima
[TaxId: 2336]}
Length = 295
Score = 62.8 bits (152), Expect = 4e-14
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQY 78
+ G LDGI TE DEF Y EM+A +P+ HPNPKKVLI G G T++
Sbjct: 53 PDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLRE 106
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 61.4 bits (148), Expect = 1e-13
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
K +G L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI G V
Sbjct: 42 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 92
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 290
Score = 61.4 bits (148), Expect = 1e-13
Identities = 29/52 (55%), Positives = 34/52 (65%)
Query: 25 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+G L+LDG+IQ TE DE +Y EMI LPLCS PNPKKVL+ G V
Sbjct: 43 SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 94
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127
(SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 276
Score = 59.0 bits (142), Expect = 8e-13
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
+ FG L LDG +Q E SY E + + +HP PK+VL+ G
Sbjct: 36 EGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGD 83
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 274
Score = 57.9 bits (139), Expect = 3e-12
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
+EFG L LDG++ +E DEF Y EM+A +PL +HPNP+ VL+ G V
Sbjct: 39 EEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGV 89
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 26.7 bits (58), Expect = 0.28
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 51 MIAFLPLCSHPNPKKVLIFTVGGSTV 76
M+ L L K++L+ +GG V
Sbjct: 1 MVKSLQLAHQLKDKRILL--IGGGEV 24
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 26.3 bits (56), Expect = 0.46
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 43 FDEFSYSEM--IAFLPLCSHPNPKKVLIFTVGG 73
F E Y E IA L + NPK V+I VG
Sbjct: 8 FQENDYEEFLEIARNGLKATSNPKHVVI--VGA 38
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId:
8836]}
Length = 301
Score = 24.1 bits (51), Expect = 2.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 38 IQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
+Q +F +S+M FL ++ P +++VG S
Sbjct: 3 VQPVDFRHHHFSDMEIFLRRYANEYPSITRLYSVGKS 39
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 24.0 bits (51), Expect = 2.5
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 42 EFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
+F+ M AFL + + ++G S
Sbjct: 2 DFNYHRQEGMEAFLKTVAQNYSSVTHLHSIGKS 34
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 23.9 bits (51), Expect = 3.0
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 59 SHPNPKKVLIFTVGGST 75
+ + +++IF +GG +
Sbjct: 527 EYRSGPRLIIFILGGVS 543
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 22.5 bits (48), Expect = 3.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 34 LDGIIQCTE-FDEFSYSEMIAFLPLCSH 60
+D ++C E E FLP C H
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGH 29
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 23.2 bits (49), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 43 FDEF-SYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
FD+ SY E+ A+L + P V + G S
Sbjct: 9 FDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKS 41
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 23.0 bits (49), Expect = 4.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 64 KKVLIFTVGGSTVQYS 79
+ VLIF +GG T S
Sbjct: 5 RNVLIFDLGGGTFDVS 20
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 23.1 bits (49), Expect = 5.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 62 NPKKVLIFTVGGST 75
+ K L+F VGG
Sbjct: 593 SYNKSLVFVVGGGN 606
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 23.1 bits (49), Expect = 6.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 59 SHPNPKKVLIFTVGGST 75
S+ + +++IF VGG +
Sbjct: 531 SYKSGPRLIIFVVGGIS 547
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 22.4 bits (47), Expect = 9.8
Identities = 4/34 (11%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 42 EFDEF-SYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
+D + + +L P + S
Sbjct: 2 PYDNYQELEVIDEYLDYIGEKYPDVATVVNAAES 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.422
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,341
Number of extensions: 12433
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 19
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)