BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4595
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
 pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
          Length = 416

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 85/149 (57%), Gaps = 56/149 (37%)

Query: 138 QKVKLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVR 197
           QKVKLFRA+EP+LSV MWGVNHTINELS+V +PVML+PDDF+AYSK+KVDNHLFNK +  
Sbjct: 31  QKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKEN-- 88

Query: 198 GILLPKELAQMSSDQCYYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFK 257
                                           LP  F+                      
Sbjct: 89  --------------------------------LPSRFK---------------------- 94

Query: 258 IKEYCPLVFRNLRERFGIDDLDYKESMTR 286
            KEYCP+VFRNLRERFGIDD DY+ S+TR
Sbjct: 95  FKEYCPMVFRNLRERFGIDDQDYQNSVTR 123



 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 25/28 (89%)

Query: 23 QKVKLFRANEPLLSVFMWGVNHTVNASS 50
          QKVKLFRA+EP+LSV MWGVNHT+N  S
Sbjct: 31 QKVKLFRASEPILSVLMWGVNHTINELS 58


>pdb|2YBX|A Chain A, Crystal Structure Of Human
           Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
 pdb|2YBX|B Chain B, Crystal Structure Of Human
           Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
          Length = 394

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 67/72 (93%)

Query: 215 YRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFG 274
           + INELSHV IPVML+PDDF+AYSK+KVDNHLFNKENMPSHFK KEYCP+VFRNLRERFG
Sbjct: 36  HSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRERFG 95

Query: 275 IDDLDYKESMTR 286
           IDD D++ S+TR
Sbjct: 96  IDDQDFQNSLTR 107



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 28 FRANEPLLSVFMWGVNHTVNASS 50
          F++ +PLLSV MWGVNH++N  S
Sbjct: 20 FQSMDPLLSVLMWGVNHSINELS 42


>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
          Length = 392

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 61/70 (87%)

Query: 217 INELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFGID 276
           INELS V  PVMLLPDDF+A SK+KV+NHLF++EN+PSHFK KEYCP VFRNLR+RFGID
Sbjct: 30  INELSQVPPPVMLLPDDFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDRFGID 89

Query: 277 DLDYKESMTR 286
           D DY  S+TR
Sbjct: 90  DQDYLVSLTR 99



 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 22 HQKVKLFRANEPLLSVFMWGVNHTVNASS 50
           QKVK+FRA +PL+ VF+WGV H++N  S
Sbjct: 6  QQKVKVFRAADPLVGVFLWGVAHSINELS 34


>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
 pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
          Length = 950

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 192 NKSHVRGILLPKELAQMSSDQCYYRINE--LSHVTIPVMLLPDDFRAYSKLKVDNHLFNK 249
            KS+ RG  LP+E+  +   Q  +R+ E  LS  T PV  L D FR++ KLKV       
Sbjct: 387 TKSNWRG-PLPREILGLFCHQ--HRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDAN 443

Query: 250 ENM 252
           EN+
Sbjct: 444 ENL 446


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,115,068
Number of Sequences: 62578
Number of extensions: 259237
Number of successful extensions: 823
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 12
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)