Query psy4595
Match_columns 286
No_of_seqs 181 out of 247
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 20:56:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0229|consensus 100.0 4.7E-33 1E-37 266.1 5.3 105 126-286 21-128 (420)
2 PLN03185 phosphatidylinositol 99.8 2.1E-21 4.7E-26 196.6 7.6 95 134-286 333-434 (765)
3 cd00139 PIPKc Phosphatidylinos 99.8 2.6E-21 5.7E-26 178.0 6.3 83 146-286 1-87 (313)
4 smart00330 PIPKc Phosphatidyli 99.0 2E-10 4.3E-15 107.5 4.4 31 256-286 30-60 (342)
5 COG5253 MSS4 Phosphatidylinosi 98.2 4.4E-07 9.5E-12 91.1 0.4 57 215-285 298-363 (612)
6 KOG0229|consensus 98.0 1.3E-06 2.8E-11 85.4 -0.0 44 10-53 20-63 (420)
7 cd00139 PIPKc Phosphatidylinos 85.6 0.24 5.1E-06 46.8 -0.1 40 181-224 36-77 (313)
8 PLN03185 phosphatidylinositol 73.1 0.96 2.1E-05 47.9 -0.5 77 133-225 341-425 (765)
9 PF12556 CobS_N: Cobaltochelat 41.3 14 0.0003 25.8 0.9 12 267-278 12-23 (36)
10 PF12884 TORC_N: Transducer of 40.4 14 0.0003 29.1 0.9 21 98-118 3-23 (67)
11 PF11827 DUF3347: Protein of u 27.1 25 0.00053 30.6 0.4 12 257-268 134-145 (174)
12 PF06502 Equine_IAV_S2: Equine 22.2 33 0.00071 27.1 0.3 18 74-92 7-24 (67)
13 PF11662 DUF3263: Protein of u 20.3 58 0.0013 26.0 1.3 17 267-283 26-42 (77)
No 1
>KOG0229|consensus
Probab=99.97 E-value=4.7e-33 Score=266.10 Aligned_cols=105 Identities=47% Similarity=0.704 Sum_probs=87.9
Q ss_pred ccccccccccccceeeeeccCchhhHHHHhhhhhhhccccCCCc---ceeecCchhhhhccccccccccccCCCCCccch
Q psy4595 126 SKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTINELSHVTI---PVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLP 202 (286)
Q Consensus 126 ~~~~~~~~~~~~qk~k~fr~~~~l~~~~~~gv~~ti~~ls~~~~---~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~~ 202 (286)
.+++++++++..|||+.|++|+||++++||||+|||++||+||+ |+|++||++++++++++++|.||+
T Consensus 21 ~~~~~~~~~~~g~~v~~~~~~~~l~~~lqlGI~~tVg~ls~v~~r~~~~~df~~~~k~~~~fp~~gs~~tp--------- 91 (420)
T KOG0229|consen 21 KKLGKKHFVKQGEKVKKGHASYPLMLNLQLGIRHTVGSLSSVPERDLPVMDFPDVEKAYSKFPSEGSKFTP--------- 91 (420)
T ss_pred ccccccceeccCceEecccccHHHHHHHHhcchhhhcccccCCcccCchhhCchhhhhheecCCCCCccCC---------
Confidence 34445666777899999999999999999999999999999999 666677766666666666555443
Q ss_pred hhhhhhcccchhhhccccccccccCCCCccccccceEEEEeccCCCCCCCCCceEEEEcCcHHhHHHHHHhCCCcchhhh
Q psy4595 203 KELAQMSSDQCYYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFGIDDLDYKE 282 (286)
Q Consensus 203 k~y~~m~~~Q~~~rin~LtgI~vpr~Ltp~DFka~eKikvd~~lFgsE~TPsHFKFKDYCP~VFR~LRELFGIDpaDYMl 282 (286)
++.|+|||||||||+|||+|||+||||++|||+
T Consensus 92 -----------------------------------------------~h~~~~Fk~KdYcP~vFR~lRelFgId~~DYl~ 124 (420)
T KOG0229|consen 92 -----------------------------------------------PHHSSDFKFKDYCPMVFRNLRELFGIDPADYLL 124 (420)
T ss_pred -----------------------------------------------CCCccccchhhcChHHHHHHHHHhCCChHHHHH
Confidence 445678999999999999999999999999999
Q ss_pred hcCC
Q psy4595 283 SMTR 286 (286)
Q Consensus 283 SLc~ 286 (286)
|||+
T Consensus 125 Slc~ 128 (420)
T KOG0229|consen 125 SLCG 128 (420)
T ss_pred HHhc
Confidence 9996
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.84 E-value=2.1e-21 Score=196.61 Aligned_cols=95 Identities=33% Similarity=0.573 Sum_probs=82.2
Q ss_pred ccccceeeee---ccCchhhHHHHhhhhhhhccccCCCcceeecCchhhhhccccccccccccCCCCCccchhhhhhhcc
Q psy4595 134 RVKHQKVKLF---RANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLPKELAQMSS 210 (286)
Q Consensus 134 ~~~~qk~k~f---r~~~~l~~~~~~gv~~ti~~ls~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~~k~y~~m~~ 210 (286)
.++.+...++ ++.+++++ +||||+|+|++++++++| +|+|+
T Consensus 333 ~~~~~g~~i~~gh~~~~l~~~-~~~GIr~sv~~~~~~~~~-~l~~~---------------------------------- 376 (765)
T PLN03185 333 EIKRPGETIIKGHRSYDLMLS-LQLGIRYTVGKITPIQRR-EVRPS---------------------------------- 376 (765)
T ss_pred hhcCCCcEEecCcCcHHHHHH-HHHhHHHHhccccccCCc-cCChh----------------------------------
Confidence 3344555444 77777777 899999999999999988 56666
Q ss_pred cchhhhccccccccccCCCCccccccceEEEEeccCCCCCCCCCc----eEEEEcCcHHhHHHHHHhCCCcchhhhhcCC
Q psy4595 211 DQCYYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSH----FKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286 (286)
Q Consensus 211 ~Q~~~rin~LtgI~vpr~Ltp~DFka~eKikvd~~lFgsE~TPsH----FKFKDYCP~VFR~LRELFGIDpaDYMlSLc~ 286 (286)
||++++|++++++..+++.||+| ||||||||+|||+||++||||++|||.|||.
T Consensus 377 ----------------------DF~~~~~~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~ 434 (765)
T PLN03185 377 ----------------------DFGPRASFWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICG 434 (765)
T ss_pred ----------------------hCcceEEEEEEcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccC
Confidence 79999999998888889999998 9999999999999999999999999999984
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=99.83 E-value=2.6e-21 Score=178.04 Aligned_cols=83 Identities=52% Similarity=0.882 Sum_probs=70.1
Q ss_pred CchhhHHHHhhhhhhhccccCCCcceeecCchhhhhccccccccccccCCCCCccchhhhhhhcccchhhhccccccccc
Q psy4595 146 NEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLPKELAQMSSDQCYYRINELSHVTI 225 (286)
Q Consensus 146 ~~~l~~~~~~gv~~ti~~ls~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~~k~y~~m~~~Q~~~rin~LtgI~v 225 (286)
+.||++++||||+|+|+++++++.|.+|+|+
T Consensus 1 ~~~l~~~~~~Gi~~~v~~~~~~~~~~~l~~~------------------------------------------------- 31 (313)
T cd00139 1 SYPLMSNLQLGIRHSVGELSSVPSPRDLLPD------------------------------------------------- 31 (313)
T ss_pred ChHHHHHHHHHHHHHhhhcccCCccccCchh-------------------------------------------------
Confidence 5799999999999999999999999899999
Q ss_pred cCCCCccccccceEEEEeccCCCCCCCC----CceEEEEcCcHHhHHHHHHhCCCcchhhhhcCC
Q psy4595 226 PVMLLPDDFRAYSKLKVDNHLFNKENMP----SHFKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286 (286)
Q Consensus 226 pr~Ltp~DFka~eKikvd~~lFgsE~TP----sHFKFKDYCP~VFR~LRELFGIDpaDYMlSLc~ 286 (286)
||++++++.++++ +++.|| .+|+||||||+|||+||++||||++|||.|||+
T Consensus 32 -------Df~~~~~~~~~~~--~~~~~~~~~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~ 87 (313)
T cd00139 32 -------DFKAKSKIKFPNH--GSHLTPPHLSADFKFKDYCPEVFRALRELFGIDEADYLRSLCR 87 (313)
T ss_pred -------hhhheEEEEcCCC--CCcccCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 4555555555443 444443 459999999999999999999999999999985
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=99.02 E-value=2e-10 Score=107.47 Aligned_cols=31 Identities=68% Similarity=1.188 Sum_probs=30.3
Q ss_pred eEEEEcCcHHhHHHHHHhCCCcchhhhhcCC
Q psy4595 256 FKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286 (286)
Q Consensus 256 FKFKDYCP~VFR~LRELFGIDpaDYMlSLc~ 286 (286)
|+||||||.+||.||++||||++||+.|||+
T Consensus 30 ~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~ 60 (342)
T smart00330 30 FKFKDYCPEVFRNLRELFGIDPADYLRSLCR 60 (342)
T ss_pred EEEEEeCHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 9999999999999999999999999999984
No 5
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=98.16 E-value=4.4e-07 Score=91.09 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=44.4
Q ss_pred hhccccccccccCC------CCccccccceEEEEeccCCCCCCCCCc---eEEEEcCcHHhHHHHHHhCCCcchhhhhcC
Q psy4595 215 YRINELSHVTIPVM------LLPDDFRAYSKLKVDNHLFNKENMPSH---FKIKEYCPLVFRNLRERFGIDDLDYKESMT 285 (286)
Q Consensus 215 ~rin~LtgI~vpr~------Ltp~DFka~eKikvd~~lFgsE~TPsH---FKFKDYCP~VFR~LRELFGIDpaDYMlSLc 285 (286)
.-|||||||++... ++.- +.| +.+.+|.. |+||||||+|||.||.+||+|++ +.||+
T Consensus 298 ~synmltgirvtlsr~e~iM~~~t----------dth--~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a--lvsl~ 363 (612)
T COG5253 298 ESYNMLTGIRVTLSRIEEIMIKKT----------DTH--LNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA--LVSLL 363 (612)
T ss_pred hhhhhhhhhHHHHHHHHHHhcCCc----------Ccc--chhhccccceeeeHHhhCHHHHHHHHHHhCCcHH--HHHHH
Confidence 36899999988753 3333 333 66777764 99999999999999999999998 55553
No 6
>KOG0229|consensus
Probab=97.99 E-value=1.3e-06 Score=85.37 Aligned_cols=44 Identities=39% Similarity=0.409 Sum_probs=38.1
Q ss_pred ccccccccceeecceEeEeecCCCeeeeeeehhccccccccccc
Q psy4595 10 LSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTVNASSLSL 53 (286)
Q Consensus 10 ~~k~kKkhf~~~~QKvKlFRa~dPllsVlMWGvNhsIneLs~~~ 53 (286)
+++++++++++..|||+.|++|+||+++|||||+|||++|+.-.
T Consensus 20 ~~~~~~~~~~~~g~~v~~~~~~~~l~~~lqlGI~~tVg~ls~v~ 63 (420)
T KOG0229|consen 20 KKKLGKKHFVKQGEKVKKGHASYPLMLNLQLGIRHTVGSLSSVP 63 (420)
T ss_pred cccccccceeccCceEecccccHHHHHHHHhcchhhhcccccCC
Confidence 34556778877779999999999999999999999999998653
No 7
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=85.57 E-value=0.24 Score=46.76 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=36.4
Q ss_pred hccccccccccccC--CCCCccchhhhhhhcccchhhhcccccccc
Q psy4595 181 YSKLKVDNHLFNKS--HVRGILLPKELAQMSSDQCYYRINELSHVT 224 (286)
Q Consensus 181 ~~k~k~~~~~fn~e--~~pg~~~~k~y~~m~~~Q~~~rin~LtgI~ 224 (286)
..|++++|+.+|.+ +.+..|.+++|| |++|+++|.+.||.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~f~fk~Y~----P~vF~~lR~~~gi~ 77 (313)
T cd00139 36 KSKIKFPNHGSHLTPPHLSADFKFKDYC----PEVFRALRELFGID 77 (313)
T ss_pred eEEEEcCCCCCcccCCCCCccEEEEEeC----HHHHHHHHHHcCCC
Confidence 34888999999997 799999999999 99999999999984
No 8
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=73.13 E-value=0.96 Score=47.89 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=48.4
Q ss_pred cccccceeeeeccCchhhHHHHhhhhhhhcccc-CCCcceeecCchhhhhccccccccccccCC---CCCc----cchhh
Q psy4595 133 FRVKHQKVKLFRANEPLLSVFMWGVNHTINELS-HVTIPVMLLPDDFRAYSKLKVDNHLFNKSH---VRGI----LLPKE 204 (286)
Q Consensus 133 ~~~~~qk~k~fr~~~~l~~~~~~gv~~ti~~ls-~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~---~pg~----~~~k~ 204 (286)
.-+.|+-..|-.+ ++--+-+.|+-.-..-. .+..-+--+ ..|++++ |+.|+ .|.| |+||+
T Consensus 341 i~~gh~~~~l~~~---~~~GIr~sv~~~~~~~~~~l~~~DF~~------~~~~~~~---fp~~gs~~tp~h~~~~fkfkd 408 (765)
T PLN03185 341 IIKGHRSYDLMLS---LQLGIRYTVGKITPIQRREVRPSDFGP------RASFWMN---FPKAGSQLTPSHQSEDFKWKD 408 (765)
T ss_pred EecCcCcHHHHHH---HHHhHHHHhccccccCCccCChhhCcc------eEEEEEE---cCcccCccCCCCccCceEEEE
Confidence 3445555555443 66666777643222111 233333332 2366666 77776 7877 89999
Q ss_pred hhhhcccchhhhccccccccc
Q psy4595 205 LAQMSSDQCYYRINELSHVTI 225 (286)
Q Consensus 205 y~~m~~~Q~~~rin~LtgI~v 225 (286)
|| |.+|++++.++||..
T Consensus 409 Y~----P~vFr~LR~~fgId~ 425 (765)
T PLN03185 409 YC----PMVFRNLREMFKIDA 425 (765)
T ss_pred EC----HHHHHHHHHHhCCCH
Confidence 99 999999999999954
No 9
>PF12556 CobS_N: Cobaltochelatase CobS subunit N terminal
Probab=41.26 E-value=14 Score=25.85 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=9.9
Q ss_pred HHHHHHhCCCcc
Q psy4595 267 RNLRERFGIDDL 278 (286)
Q Consensus 267 R~LRELFGIDpa 278 (286)
-..||.||||.+
T Consensus 12 vsvre~FGiDsD 23 (36)
T PF12556_consen 12 VSVREVFGIDSD 23 (36)
T ss_pred EeHHHhcCCCcC
Confidence 357999999975
No 10
>PF12884 TORC_N: Transducer of regulated CREB activity, N terminus; InterPro: IPR024783 This entry represents the N-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS) []. The coiled-coil structure interacts with the bZIP domain of CREB []. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions []. In addition to CREB-binding, the N-terminal domain plays a role in the tetramer formation of TORCs [], but the physiological function of the multimeric complex has not been clarified yet.; GO: 0008140 cAMP response element binding protein binding, 0051289 protein homotetramerization
Probab=40.44 E-value=14 Score=29.08 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=18.0
Q ss_pred ceehhhhhhhhhhhhhhhhhh
Q psy4595 98 RKFACKIAVHVHRLAQATMAA 118 (286)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (286)
|||.-|||.|-.|-|..|.+-
T Consensus 3 RKFSEKIALh~QKQaEetaaF 23 (67)
T PF12884_consen 3 RKFSEKIALHNQKQAEETAAF 23 (67)
T ss_pred hhHHHHHHHHHHHHhHHHHHH
Confidence 899999999999988776553
No 11
>PF11827 DUF3347: Protein of unknown function (DUF3347); InterPro: IPR021782 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.
Probab=27.06 E-value=25 Score=30.60 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=9.7
Q ss_pred EEEEcCcHHhHH
Q psy4595 257 KIKEYCPLVFRN 268 (286)
Q Consensus 257 KFKDYCP~VFR~ 268 (286)
-++.||||+|.+
T Consensus 134 ly~~~CPMa~~~ 145 (174)
T PF11827_consen 134 LYVQYCPMAFNN 145 (174)
T ss_pred EEEEECCCccCC
Confidence 468899999864
No 12
>PF06502 Equine_IAV_S2: Equine infectious anaemia virus S2 protein; InterPro: IPR009480 This family consists of several equine infectious anaemia virus S2 proteins. The function of this family is unknown.
Probab=22.20 E-value=33 Score=27.08 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=14.1
Q ss_pred cccccccceeeeeeeccee
Q psy4595 74 CKEWRVPHSVGILTLGESV 92 (286)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ 92 (286)
--.|.+|||.|. .-|||-
T Consensus 7 GVTWSa~HSmG~-sqGesq 24 (67)
T PF06502_consen 7 GVTWSASHSMGV-SQGESQ 24 (67)
T ss_pred cceeeecccccc-cccccc
Confidence 346999999998 677763
No 13
>PF11662 DUF3263: Protein of unknown function (DUF3263); InterPro: IPR021678 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.31 E-value=58 Score=25.97 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.7
Q ss_pred HHHHHHhCCCcchhhhh
Q psy4595 267 RNLRERFGIDDLDYKES 283 (286)
Q Consensus 267 R~LRELFGIDpaDYMlS 283 (286)
+.||+.|||.+.+|..-
T Consensus 26 ~aIre~fGls~~rYyq~ 42 (77)
T PF11662_consen 26 EAIREEFGLSPTRYYQR 42 (77)
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 67999999999999654
Done!