Query psy4595
Match_columns 286
No_of_seqs 181 out of 247
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:56:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gk9_A Phosphatidylinositol-4- 100.0 2.9E-30 9.8E-35 241.1 6.5 95 136-286 5-99 (392)
2 2ybx_A Phosphatidylinositol-5- 99.9 4.4E-28 1.5E-32 226.8 6.7 93 138-286 15-107 (394)
3 2gk9_A Phosphatidylinositol-4- 99.1 3.7E-12 1.3E-16 119.3 -2.0 38 183-224 52-89 (392)
4 2ybx_A Phosphatidylinositol-5- 98.5 2.7E-09 9.1E-14 100.2 -3.4 39 182-224 59-97 (394)
5 4htm_A CREB-regulated transcri 37.8 10 0.00035 25.5 0.8 23 93-117 1-23 (34)
6 4ard_A Capsid protein P27; vir 15.3 36 0.0012 27.8 0.2 44 138-201 11-54 (116)
7 1p7b_A Integral membrane chann 14.9 25 0.00085 32.2 -1.0 31 23-55 210-240 (333)
8 2gix_A Inward rectifier potass 14.8 36 0.0012 29.3 0.1 33 22-55 84-118 (208)
9 3agw_A KIR3.2, G protein-activ 11.4 59 0.002 28.1 0.4 26 29-55 95-120 (208)
10 2h5n_A Hypothetical protein PG 10.6 1.2E+02 0.004 23.7 1.8 20 264-283 107-126 (133)
No 1
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=241.09 Aligned_cols=95 Identities=72% Similarity=1.230 Sum_probs=75.1
Q ss_pred ccceeeeeccCchhhHHHHhhhhhhhccccCCCcceeecCchhhhhccccccccccccCCCCCccchhhhhhhcccchhh
Q psy4595 136 KHQKVKLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLPKELAQMSSDQCYY 215 (286)
Q Consensus 136 ~~qk~k~fr~~~~l~~~~~~gv~~ti~~ls~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~~k~y~~m~~~Q~~~ 215 (286)
.+||+|+||+++||++++||||+|||++|+++|+|+|||||
T Consensus 5 ~~~~~~~~r~~~~~~~~~~~Gi~~~v~~~~~~~~~~~L~~~--------------------------------------- 45 (392)
T 2gk9_A 5 VQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVMLLPD--------------------------------------- 45 (392)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTSCCCSSCCGG---------------------------------------
T ss_pred ceeeeeecCcchHHHHHHHHhHHHHhhcccCCCCccccChh---------------------------------------
Confidence 56999999999999999999999999999999999999999
Q ss_pred hccccccccccCCCCccccccceEEEEeccCCCCCCCCCceEEEEcCcHHhHHHHHHhCCCcchhhhhcCC
Q psy4595 216 RINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286 (286)
Q Consensus 216 rin~LtgI~vpr~Ltp~DFka~eKikvd~~lFgsE~TPsHFKFKDYCP~VFR~LRELFGIDpaDYMlSLc~ 286 (286)
||++++|++++++.|++|++|++|+||||||.|||+||++||||++||+.|||+
T Consensus 46 -----------------df~~~~k~~~~~~~f~~e~~p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~ 99 (392)
T 2gk9_A 46 -----------------DFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTR 99 (392)
T ss_dssp -----------------GGGCEEEEEEECSSSCCSSSCSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHS
T ss_pred -----------------HhhhheEEeeccccCCcccCCCceEEEEECHHHHHHHHHHhCCCHHHHHHHhcC
Confidence 455555555555566667788899999999999999999999999999999985
No 2
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=99.94 E-value=4.4e-28 Score=226.77 Aligned_cols=93 Identities=76% Similarity=1.318 Sum_probs=81.9
Q ss_pred ceeeeeccCchhhHHHHhhhhhhhccccCCCcceeecCchhhhhccccccccccccCCCCCccchhhhhhhcccchhhhc
Q psy4595 138 QKVKLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLPKELAQMSSDQCYYRI 217 (286)
Q Consensus 138 qk~k~fr~~~~l~~~~~~gv~~ti~~ls~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~~k~y~~m~~~Q~~~ri 217 (286)
+.+++||+++||+++|||||+|||++|+++|+|+|||||
T Consensus 15 ~~~~~~r~~~~l~~~~~~Gi~~~v~~~~~~~~~~~L~~~----------------------------------------- 53 (394)
T 2ybx_A 15 TENLYFQSMDPLLSVLMWGVNHSINELSHVQIPVMLMPD----------------------------------------- 53 (394)
T ss_dssp --CCCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGG-----------------------------------------
T ss_pred CcccccccchHHHHHHHHhHHHHHhhccCCCCccccChh-----------------------------------------
Confidence 678999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccccccceEEEEeccCCCCCCCCCceEEEEcCcHHhHHHHHHhCCCcchhhhhcCC
Q psy4595 218 NELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286 (286)
Q Consensus 218 n~LtgI~vpr~Ltp~DFka~eKikvd~~lFgsE~TPsHFKFKDYCP~VFR~LRELFGIDpaDYMlSLc~ 286 (286)
||++++|++++++.|+++++|++|+||||||+|||+||++||||++||+.|||+
T Consensus 54 ---------------df~~~~k~~~~~~~f~~~~~p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~ 107 (394)
T 2ybx_A 54 ---------------DFKAYSKIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTR 107 (394)
T ss_dssp ---------------GGGCEEEEEEEEESSSTTTSCSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHS
T ss_pred ---------------HhhhheEEecccccCCcccCCCCeEEEEECHHHHHHHHHHhCCCHHHHHHHhcC
Confidence 455555555555566667788899999999999999999999999999999985
No 3
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=99.11 E-value=3.7e-12 Score=119.29 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=35.7
Q ss_pred cccccccccccCCCCCccchhhhhhhcccchhhhcccccccc
Q psy4595 183 KLKVDNHLFNKSHVRGILLPKELAQMSSDQCYYRINELSHVT 224 (286)
Q Consensus 183 k~k~~~~~fn~e~~pg~~~~k~y~~m~~~Q~~~rin~LtgI~ 224 (286)
|+++|||.||+|++|+.|++++|| |.+|++++.+.||.
T Consensus 52 k~~~~~~~f~~e~~p~~f~~k~Y~----P~~F~~LR~~~~i~ 89 (392)
T 2gk9_A 52 KIKVNNHLFHRENLPSHFKFKEYC----PQVFRNLRDRFGID 89 (392)
T ss_dssp EEEEECSSSCCSSSCSSBEEEEES----HHHHHHHHHTTTCC
T ss_pred EEeeccccCCcccCCCceEEEEEC----HHHHHHHHHHhCCC
Confidence 578899999999999999999999 89999999999985
No 4
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=98.54 E-value=2.7e-09 Score=100.24 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=35.9
Q ss_pred ccccccccccccCCCCCccchhhhhhhcccchhhhcccccccc
Q psy4595 182 SKLKVDNHLFNKSHVRGILLPKELAQMSSDQCYYRINELSHVT 224 (286)
Q Consensus 182 ~k~k~~~~~fn~e~~pg~~~~k~y~~m~~~Q~~~rin~LtgI~ 224 (286)
.|+++|||.||+|++|+.|++|+|| |.+|+++|.+.||.
T Consensus 59 ~k~~~~~~~f~~~~~p~~f~~k~Y~----P~~F~~LR~~~~i~ 97 (394)
T 2ybx_A 59 SKIKVDNHLFNKENMPSHFKFKEYC----PMVFRNLRERFGID 97 (394)
T ss_dssp EEEEEEEESSSTTTSCSEEEEEEES----HHHHHHHHHHTTCC
T ss_pred eEEecccccCCcccCCCCeEEEEEC----HHHHHHHHHHhCCC
Confidence 3578899999999999999999999 89999999999984
No 5
>4htm_A CREB-regulated transcription coactivator 2; alpha-helix, CREB binding, protein binding; 2.00A {Homo sapiens}
Probab=37.77 E-value=10 Score=25.46 Aligned_cols=23 Identities=52% Similarity=0.664 Sum_probs=17.7
Q ss_pred eccccceehhhhhhhhhhhhhhhhh
Q psy4595 93 YNLQYRKFACKIAVHVHRLAQATMA 117 (286)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (286)
||+ |||.-|||.|-.|-|+++.+
T Consensus 1 ~~p--rkfsekia~~~~kqae~~~~ 23 (34)
T 4htm_A 1 YNP--RKFSEKIALQKQRQAEETAA 23 (34)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH
T ss_pred Cch--hhHHHHHHHHHHHHHHHHHH
Confidence 566 99999999999998887754
No 6
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=15.31 E-value=36 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=33.9
Q ss_pred ceeeeeccCchhhHHHHhhhhhhhccccCCCcceeecCchhhhhccccccccccccCCCCCccc
Q psy4595 138 QKVKLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILL 201 (286)
Q Consensus 138 qk~k~fr~~~~l~~~~~~gv~~ti~~ls~~~~~~mLmpDdf~~~~k~k~~~~~fn~e~~pg~~~ 201 (286)
.-|++|.+++|..-.+.-++.+- .|.|.||+.-++.-. -|||..
T Consensus 11 ka~t~YG~ts~y~~~lL~~la~~-----------~LtP~DWkslar~~L---------~pgq~l 54 (116)
T 4ard_A 11 TAASQYGATAPYTLAIVESVADN-----------WLTPTDWNTLVRAVL---------SGGDHL 54 (116)
T ss_pred HHHHHhCCChHHHHHHHHHHHHh-----------ccChHhHHHHHHHHc---------CchhHH
Confidence 45788999999988887776652 489999999888754 468865
No 7
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=14.89 E-value=25 Score=32.21 Aligned_cols=31 Identities=29% Similarity=0.711 Sum_probs=24.4
Q ss_pred ceEeEeecCCCeeeeeeehhccccccccccccc
Q psy4595 23 QKVKLFRANEPLLSVFMWGVNHTVNASSLSLYS 55 (286)
Q Consensus 23 QKvKlFRa~dPllsVlMWGvNhsIneLs~~~~~ 55 (286)
+.++|-|+..|++ ++.|-|-|.|+|-|| ||.
T Consensus 210 ~~l~l~~~~~~~l-~~~~tv~H~Id~~SP-L~~ 240 (333)
T 1p7b_A 210 HDLKLVRNEHPIF-LLGWNMMHVIDESSP-LFG 240 (333)
T ss_dssp CCSGGGTTCSCCC-CSSEEEEEECSTTST-TSS
T ss_pred eecccccCCCeeE-eeeEEEEEeCCCCCC-ccc
Confidence 4556667778877 668999999999998 554
No 8
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=14.79 E-value=36 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.5
Q ss_pred cceEeEee--cCCCeeeeeeehhccccccccccccc
Q psy4595 22 HQKVKLFR--ANEPLLSVFMWGVNHTVNASSLSLYS 55 (286)
Q Consensus 22 ~QKvKlFR--a~dPllsVlMWGvNhsIneLs~~~~~ 55 (286)
++.++|-+ .+++++-++.|-|-|.|+|-|| ||.
T Consensus 84 ~~~L~l~~d~~~~~~fl~~p~tv~H~IDe~SP-L~~ 118 (208)
T 2gix_A 84 QIDINVGFDSGIDRIFLVSPITIVHEIDEDSP-LYD 118 (208)
T ss_dssp EEEECSSGGGTTTEECCSSCEEEEEECCTTST-TTT
T ss_pred EEEEEeccCCCCCceEEeccEEEEEECCCCCC-ccc
Confidence 35555544 4678888899999999999999 564
No 9
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=11.42 E-value=59 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.5
Q ss_pred ecCCCeeeeeeehhccccccccccccc
Q psy4595 29 RANEPLLSVFMWGVNHTVNASSLSLYS 55 (286)
Q Consensus 29 Ra~dPllsVlMWGvNhsIneLs~~~~~ 55 (286)
..+++++-++.|-|-|.|+|-|| ||.
T Consensus 95 ~~~~~~fl~~p~tv~H~IDe~SP-L~~ 120 (208)
T 3agw_A 95 TGDDRLFLVSPLIISHEINQQSP-FWE 120 (208)
T ss_dssp TTTTBCCCSSCEEEEEECCTTST-TTT
T ss_pred CCCCceEEeccEEEEEECCCCCC-ccc
Confidence 34677778899999999999999 564
No 10
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=10.56 E-value=1.2e+02 Score=23.71 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHhHHHHHHhCCCcchhhhh
Q psy4595 264 LVFRNLRERFGIDDLDYKES 283 (286)
Q Consensus 264 ~VFR~LRELFGIDpaDYMlS 283 (286)
.+-|.+.+++||++.||..|
T Consensus 107 ~lLr~ia~~Lgls~~d~~~~ 126 (133)
T 2h5n_A 107 ALWTLISTLCGLPTMTVMEA 126 (133)
T ss_dssp HHHHHHHHHHTCCCCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46778888888888888655
Done!