RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4595
(286 letters)
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK)
catalyze the phosphorylation of phosphatidylinositol
phosphate on the fourth or fifth hydroxyl of the
inositol ring, to form phosphatidylinositol
bisphosphate. CD alignment includes type II
phosphatidylinositol phosphate kinases (PIPKII-beta),
type I andII PIPK (-alpha, -beta, and -gamma) kinases
and related yeast Fab1p and Mss4p kinases. Signaling by
phosphorylated species of phosphatidylinositol regulates
secretion, vesicular trafficking, membrane
translocation, cell adhesion, chemotaxis, DNA synthesis,
and cell cycling. The catalytic core domains of PIPKs
are structurally similar to PI3K, PI4K, and
cAMP-dependent protein kinases (PKA), the dimerization
region is a unique feature of the PIPKs.
Length = 313
Score = 81.2 bits (201), Expect = 9e-18
Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 214 YYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKE--NMPSHFKIKEYCPLVFRNLRE 271
+ + ELS V P LLPDDF+A SK+K NH + ++ + FK K+YCP VFR LRE
Sbjct: 13 RHSVGELSSVPSPRDLLPDDFKAKSKIKFPNHGSHLTPPHLSADFKFKDYCPEVFRALRE 72
Query: 272 RFGIDDLDYKESMTR 286
FGID+ DY S+ R
Sbjct: 73 LFGIDEADYLRSLCR 87
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 73.6 bits (181), Expect = 6e-15
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 230 LPDDFRAYSKLKVDNHLFNKENMPSH----FKIKEYCPLVFRNLRERFGIDDLDYKESMT 285
LP DF+A K+K + E PSH FK K+YCP VFRNLRE FGID DY S+
Sbjct: 1 LPSDFKATEKIKFPTPG-HLELTPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLC 59
Query: 286 R 286
R
Sbjct: 60 R 60
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 51.8 bits (124), Expect = 2e-07
Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 253 PSH----FKIKEYCPLVFRNLRERFGIDDLDYKESMT 285
PSH FK K+YCP+VFRNLRE F ID DY S+
Sbjct: 397 PSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSIC 433
>gnl|CDD|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE2 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE2 (also known as
glycerophosphodiester phosphodiesterase
domain-containing protein 5 (GDPD5)) and their metazoan
homologs. Mammalian GDE2 is transmembrane protein
primarily expressed in mature neurons. It is a mammalian
homolog of bacterial glycerophosphodiester
phosphodiesterases (GP-GDEs, EC 3.1.4.46), which
catalyze the hydrolysis of various
glycerophosphodiesters, and produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. Mammalian GDE2 selectively hydrolyzes
glycerophosphocholine (GPC) and has been characterized
as GPC-GDE (EC 3.1.4.2) that contributes to osmotic
regulation of cellular GPC. Mammalian GDE2 functions in
a complex with an antioxidant scavenger peroxiredoxin1
(Prdx1) to control motor neuron differentiation in the
spinal cord. Mammalian GDE2 also plays a critical role
for retinoid-induced neuronal outgrowth. The catalytic
activity of GDPD domain is essential for mammalian GDE2
cellular function.
Length = 351
Score = 32.1 bits (73), Expect = 0.33
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 97 YRKFACKIAVHVHRLAQATMAASSL-QGGLSKLKKKHFRVKHQKVKLFRA---------- 145
RK K+A + + + +SL + G+++L ++ + Q+++ + A
Sbjct: 172 QRKLVRKVAPGFQQTSGEKLPVASLRERGITRLNLRYTQASAQEIRDYSASNLSVNLYTV 231
Query: 146 NEPLLSVFMW--GVNHTINELSH----VTIPVMLLPDD 177
NEP L +W GV ++ SH V P+ L+P D
Sbjct: 232 NEPWLYSLLWCSGVPSVTSDASHVLRKVPFPLWLMPPD 269
>gnl|CDD|225659 COG3117, COG3117, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 188
Score = 28.9 bits (65), Expect = 2.0
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 149 LLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGILLPKELAQM 208
L + I V PD+ AY+ +D ++++ +G L K +
Sbjct: 18 LSGWLLGLEQDEIE-------QVRPNPDE-PAYTMEGLDTTVYDE---QGKL--KYR--L 62
Query: 209 SSDQC-YYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENM 252
++ +Y + +H T PV+ L + R ++ D K+
Sbjct: 63 TAQHVEHYSDSSDTHFTAPVLTLFRENRQTWTVQADRAKLTKDGK 107
>gnl|CDD|239001 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H.
Length = 366
Score = 29.5 bits (66), Expect = 2.0
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 46 VNASSLSLYS-SGQANSADSALRRQTGAKCKEWRVPHSVGILTLGESVYNLQYRKFACKI 104
V ASSL L S G+A++A A + K K+ V H+ G+ L V N R KI
Sbjct: 33 VVASSLGLVSMGGKASTASQAKAVLSADKLKDEHV-HT-GLSELLNEVSNSTARNVTWKI 90
Query: 105 AVHVHRLAQATMAASSLQGGLSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTINEL 164
++ + + A K KKH+ +H K+ L S+ W T +L
Sbjct: 91 GNRLYGPSSVSFADD-----FVKNSKKHYNYEHSKINFRDKRSALNSINEWAAQTTDGKL 145
Query: 165 SHVT 168
VT
Sbjct: 146 PEVT 149
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 29.1 bits (65), Expect = 3.4
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 241 KVDNHLFNKENMPS---HFKIKEYCPLVFRNLRERFGID 276
K D HL E F K+Y P VFR LR G D
Sbjct: 320 KTDTHL--NEQFEEGLYEFSCKDYFPEVFRELRALCGCD 356
>gnl|CDD|211414 cd11573, GH99_GH71_like, Glycoside hydrolase families 71, 99, and
related domains. This superfamily of glycoside
hydrolases contains families GH71 and GH99 (following
the CAZY nomenclature), as well as other members with
undefined function and specificity.
Length = 284
Score = 28.6 bits (64), Expect = 3.5
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 215 YRINELSHVTIPVMLLPDDFRAYSKLKVD----NHLFNKENMPSHFKIKEYCPLVF 266
E + TI ML P R +L V L N+ PS + PLVF
Sbjct: 52 LDAAEEENFTIFFMLDPASLREAGELDVVLERITRLINEYRNPSSYYKVGGKPLVF 107
>gnl|CDD|181876 PRK09461, ansA, cytoplasmic asparaginase I; Provisional.
Length = 335
Score = 28.4 bits (64), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 247 FNKENMPSHFKIKEYCPLV 265
F++ MP F I EY PL+
Sbjct: 41 FHRPEMPD-FTIHEYTPLI 58
>gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 27.7 bits (62), Expect = 9.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 19 RVKHQKVKLFRANEPLLSVFM 39
R+K + VK FR N+PL SV+M
Sbjct: 104 RLKDEVVKNFRQNDPLNSVYM 124
Score = 27.7 bits (62), Expect = 9.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 134 RVKHQKVKLFRANEPLLSVFM 154
R+K + VK FR N+PL SV+M
Sbjct: 104 RLKDEVVKNFRQNDPLNSVYM 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.398
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,087,677
Number of extensions: 1283462
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 16
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)