RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4595
(286 letters)
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase,
signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Length = 394
Score = 87.6 bits (216), Expect = 7e-20
Identities = 59/70 (84%), Positives = 66/70 (94%)
Query: 217 INELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKEYCPLVFRNLRERFGID 276
INELSHV IPVML+PDDF+AYSK+KVDNHLFNKENMPSHFK KEYCP+VFRNLRERFGID
Sbjct: 38 INELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRERFGID 97
Query: 277 DLDYKESMTR 286
D D++ S+TR
Sbjct: 98 DQDFQNSLTR 107
Score = 34.1 bits (77), Expect = 0.040
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 KKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTVNASS 50
+ F++ +PLLSV MWGVNH++N S
Sbjct: 6 HHSSGVDLGTENLYFQSMDPLLSVLMWGVNHSINELS 42
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma;
phosphoinositide, structural genomics, structural
genomics consortium, SGC, transferase; 2.80A {Homo
sapiens}
Length = 392
Score = 84.9 bits (209), Expect = 5e-19
Identities = 64/153 (41%), Positives = 78/153 (50%), Gaps = 56/153 (36%)
Query: 134 RVKHQKVKLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNK 193
QKVK+FRA +PL+ VF+WGV H+INELS V PVMLLPDDF+A SK+KV+NHLF++
Sbjct: 3 HFVQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHR 62
Query: 194 SHVRGILLPKELAQMSSDQCYYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMP 253
+ LP F+
Sbjct: 63 EN----------------------------------LPSHFK------------------ 70
Query: 254 SHFKIKEYCPLVFRNLRERFGIDDLDYKESMTR 286
FK YCP VFRNLR+RFGIDD DY S+TR
Sbjct: 71 --FKE--YCPQVFRNLRDRFGIDDQDYLVSLTR 99
Score = 43.0 bits (100), Expect = 7e-05
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 19 RVKHQKVKLFRANEPLLSVFMWGVNHTVNASS 50
QKVK+FRA +PL+ VF+WGV H++N S
Sbjct: 3 HFVQQKVKVFRAADPLVGVFLWGVAHSINELS 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.007
Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 64/250 (25%)
Query: 4 SSLQGGLSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTVNASSLSLY-----SSGQ 58
+ ++ L+ L+ +R K+F LSVF + + LSL S
Sbjct: 357 TIIESSLNVLEPAEYR------KMFDR----LSVFPPSAH--IPTILLSLIWFDVIKSDV 404
Query: 59 ANSADSALRRQTGAKCKEWRVPHSVGILTLGESVYNLQYRKFACKIA--VHVHR--LAQA 114
+ + + ++ ++ I ++ Y + K+ +HR +
Sbjct: 405 MVVVNKLHKY---SLVEKQPKESTISIPSI--------YLELKVKLENEYALHRSIVDHY 453
Query: 115 TMAASSLQGGLSKLKKK---------HFRV--KHQKVKLFRANEPLLSVFMWGVNHTINE 163
+ + L H + +++ LFR L F + ++
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLD-FRFLEQKIRHD 510
Query: 164 LSHVTIPVMLLPD--DFRAYSKLKVDNHLFNKSHVRGIL--LPK--------------EL 205
+ +L + Y DN + V IL LPK +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 206 AQMSSDQCYY 215
A M+ D+ +
Sbjct: 571 ALMAEDEAIF 580
Score = 31.0 bits (69), Expect = 0.49
Identities = 38/286 (13%), Positives = 76/286 (26%), Gaps = 78/286 (27%)
Query: 10 LSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTVNASSLSLYSSGQANSADSALRRQ 69
LS H + H +E SL + L R+
Sbjct: 281 LSAATTTHISLDHHS-MTLTPDE-----------------VKSLLLK-YLDCRPQDLPRE 321
Query: 70 T-----------GAKCKE-------WRVPH--------SVGILTLGESVYNLQYRKFA-- 101
++ W+ + + L + Y + + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 102 ---CKIAVHVHRLAQATMAASSLQGGLSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVN 158
I + L + S + ++KL K K K + S+++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKV 437
Query: 159 HTINE-------LSHVTIPVMLLPDDFRAYSKLKVDNHLFN--KSHVRGILLPKELAQMS 209
NE + H IP DD +D + ++ H++ I P+ +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 210 SDQCY--YRI--NELSHVTIPVM----LLPD--DFRAYSKLKVDNH 245
+ +R ++ H + +L + Y DN
Sbjct: 495 --MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.15
Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 82/220 (37%)
Query: 26 KLFRANEPLLSVFMWG-----VNHTVN------ASSLSLYSSGQANSADSALRRQTGAKC 74
K+F+ + + + ++ T + + L+ +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE---------DLKSKGL--- 1752
Query: 75 KEWRVP-------HSVG----------ILTLGESVYNLQYRKFACKIAVHVHRLAQAT-- 115
+P HS+G ++++ V + YR ++AV L ++
Sbjct: 1753 ----IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 116 MAA---SSLQGGLSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNH------------- 159
M A + S+ + + V+ ++ + L+ + VN+
Sbjct: 1809 MIAINPGRVAASFSQ-EALQYVVE----RVGKRTGWLVEI----VNYNVENQQYVAAGDL 1859
Query: 160 -TINELSHVT-------IPVMLLPDDFRAYSKLKVDNHLF 191
++ +++V I ++ L S +V+ HLF
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSL---SLEEVEGHLF 1896
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 29.9 bits (68), Expect = 0.76
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 103 KIAVHVHRLAQATMAASSLQGGLSKLKKKHFRVKHQKVKLFRANEPLLSVFMWGVNHTIN 162
++A + +A AA SL ++LK ++ ++V L P + G N
Sbjct: 100 QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTS---GKESIQN 156
Query: 163 EL 164
++
Sbjct: 157 QV 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.76
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 6/17 (35%)
Query: 49 SSLSLYSSGQANSADSA 65
+SL LY + DSA
Sbjct: 27 ASLKLY------ADDSA 37
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 22/77 (28%)
Query: 65 ALRRQTGAKCKEWRVPHSV-GILTL--GESVYNLQYRKFACKIA--V------------- 106
+ Q G K + +P + + L G ++Y + +F +A +
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISD 1003
Query: 107 ----HVHRLAQATMAAS 119
V + + +
Sbjct: 1004 DIISQVDPITLFVLVSV 1020
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.398
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,181,028
Number of extensions: 230937
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 15
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)